# terms

id: PBO:0003764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sm snRNP core protein Sme1","termid":"PBO:0003764"}


id: PBO:0075209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide N","termid":"PBO:0075209"}


id: SO:0000484
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The sequence of the 3' exon that is not coding.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"noncoding_region_of_exon","termid":"SO:0001214"},{"relation_name":"part_of","term_name":"three_prime_coding_exon","termid":"SO:0000202"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_coding_exon_noncoding_region","synonyms":[{"name":"three prime coding exon noncoding region","type":"exact"},{"name":"three_prime_exon_noncoding_region","type":"exact"}],"termid":"SO:0000484"}


id: FYPO:0004828
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is normal (i.e. indistinguishable from wild type) during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to nucleus during mitosis","synonyms":[{"name":"normal protein localisation to nucleus during mitosis","type":"exact"},{"name":"normal protein localization to nucleus during mitosis during vegetative growth","type":"exact"},{"name":"normal protein localization to nucleus during mitotic M phase","type":"related"},{"name":"normal protein localization to nucleus during mitotic nuclear division","type":"exact"}],"termid":"FYPO:0004828"}


id: GO:0014025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a thickened region of the neurectoderm that is roughly triangular in cross section. The neural keel develops from the neural plate and develops into the neural rod. Neural keel formation occurs during primary neurulation in teleosts.","definition_xrefs":["GOC:dh","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"neural rod formation","termid":"GO:0014023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural keel formation","termid":"GO:0014025"}


id: PBO:0088038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-conjugating enzyme; key E2 partner with Ubc4p for the anaphase-promoting complex (APC); mediates selective degradation of short-lived and abnormal proteins; plays a role in vesicle biogenesis and ER-associated protein degradation (ERAD); component of the cellular stress response; protein abundance increases in response to DNA replication stress key E2 partner with Ubc4p for the anaphase-promoting complex (APC)","termid":"PBO:0088038"}


id: PBO:0048339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 50","termid":"PBO:0048339"}


id: PATO:0000938
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organization quality","termid":"PATO:0002264"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"organized","termid":"PATO:0000938"}


id: PBO:0059701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 9","termid":"PBO:0059701"}


id: GO:1990717
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Part of the 9+2 axoneme, that occurs in most motile cilia, consisting of the two bridges which connect the central pair of single microtubules.","definition_xrefs":["PMID:21586547","PMID:9295136","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axonemal central apparatus","termid":"GO:1990716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"axonemal central bridge","termid":"GO:1990717"}


id: FYPO:0007812
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to stavudine. Cells stop growing (and may die) at a concentration of stavudine that allows wild type cells to grow.","definition_xrefs":["PomBase:mah","PMID:34108240"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0005447","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to stavudine","synonyms":[{"name":"hypersensitive to stavudine","type":"exact"},{"name":"sensitive to stavudine during mitotic cell cycle","type":"related"},{"name":"sensitive to stavudine during vegetative growth","type":"exact"}],"termid":"FYPO:0007812"}


id: GO:0071108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein deubiquitination process in which a K48-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is removed from a protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein deubiquitination","termid":"GO:0016579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"protein K48-linked deubiquitination","termid":"GO:0071108"}


id: PBO:0005266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome maturation factor Ump1 (predicted)","termid":"PBO:0005266"}


id: GO:2000380
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mesoderm development.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"mesoderm development","termid":"GO:0007498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesoderm development","termid":"GO:2000380"}


id: PATO:0001006
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001006 absolute latency (obsolete PATO:0001006)","termid":"PATO:0001006"}


id: PBO:0061427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 1 group D member 1","termid":"PBO:0061427"}


id: GO:0034042
data:
  {"annotated_genes":["SJAG_03724"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92202],"is_not":false,"summary":null,"term":"GO:0034042"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal of 5-formyluracil bases by cleaving the N-C1' glycosidic bond between the oxidized pyrimidine and the deoxyribose sugar.","definition_xrefs":["GOC:mah","PMID:17641464"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity","termid":"GO:0000703"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0140097","GO:0003824","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"5-formyluracil DNA N-glycosylase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"5-foU DNA N-glycosylase activity","type":"exact"}],"termid":"GO:0034042","terms_by_termid":{"GO:0034042":null}}


id: SO:0000531
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one D-gene and one J-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"D_gene_segment","termid":"SO:0000458"},{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"J_gene_segment","termid":"SO:0000470"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_D_J_C_cluster","synonyms":[{"name":"V D J C cluster","type":"exact"},{"name":"V-D-J-C-CLUSTER","type":"exact"}],"termid":"SO:0000531"}


id: PBO:0051916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit beta 1 pseudogene 1","termid":"PBO:0051916"}


id: PBO:0040488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATXN7L3 antisense RNA 1","termid":"PBO:0040488"}


id: PBO:0061596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurotensin receptor 2","termid":"PBO:0061596"}


id: GO:0050654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving chondroitin sulfate proteoglycan, any glycoprotein whose glycosaminoglycan units are chondroitin sulfate. Chondroitin sulfates are a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues; the repeat units consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteoglycan metabolic process","termid":"GO:0006029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chondroitin sulfate proteoglycan metabolic process","synonyms":[{"name":"chondroitin sulfate proteoglycan metabolism","type":"exact"},{"name":"chondroitin sulphate proteoglycan metabolic process","type":"exact"},{"name":"chondroitin sulphate proteoglycan metabolism","type":"exact"}],"termid":"GO:0050654"}


id: GO:0006904
data:
  {"annotated_genes":["SJAG_01772","SJAG_00280","SJAG_02320","SJAG_01697","SJAG_03005","SJAG_02587","SJAG_04966","SJAG_03499"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85753,86605,88354,96338,113686,114389,114608,115014],"is_not":false,"summary":null,"term":"GO:0006904"}]},"cv_name":"biological_process","definition":"The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.","definition_xrefs":["PMID:22438915","GOC:aruk","GOC:jid","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle docking","termid":"GO:0048278"},{"relation_name":"is_a","term_name":"exocytic process","termid":"GO:0140029"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00280":null,"SJAG_01697":null,"SJAG_01772":null,"SJAG_02320":null,"SJAG_02587":null,"SJAG_03005":null,"SJAG_03499":null,"SJAG_04966":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0140056"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0140056","GO:0016192","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"vesicle docking involved in exocytosis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"vesicle docking during exocytosis","type":"related"}],"termid":"GO:0006904","terms_by_termid":{"GO:0006904":null}}


id: GO:0047809
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-lactate + A = AH(2) + pyruvate.","definition_xrefs":["EC:1.1.99.6","RHEA:15089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"D-2-hydroxy-acid dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R00297","MetaCyc:D-2-HYDROXY-ACID-DEHYDROGENASE-RXN"],"synonyms":[{"name":"(R)-2-hydroxy-acid:(acceptor) 2-oxidoreductase activity","type":"related"},{"name":"2-hydroxy acid dehydrogenase activity","type":"related"}],"termid":"GO:0047809"}


id: PBO:0052297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH RNA binding domain containing, signal transduction associated 2","termid":"PBO:0052297"}


id: PBO:0051437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 3-21","termid":"PBO:0051437"}


id: GO:0002279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid cell activation involved in immune response","termid":"GO:0002275"},{"relation_name":"is_a","term_name":"mast cell activation","termid":"GO:0045576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mast cell activation involved in immune response","synonyms":[{"name":"mast cell activation during immune response","type":"related"}],"termid":"GO:0002279"}


id: PBO:0043317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clathrin interactor 1","termid":"PBO:0043317"}


id: GO:0044245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The whole of the physical, chemical, and biochemical processes carried out by living organisms to break down ingested polysaccharides into components that may be easily absorbed and directed into metabolism.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestion","termid":"GO:0007586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polysaccharide digestion","termid":"GO:0044245"}


id: PBO:0041512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 14 open reading frame 180","termid":"PBO:0041512"}


id: PBO:0091425
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetrameric(1)","termid":"PBO:0091425"}


id: PBO:0046445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"erythropoietin","termid":"PBO:0046445"}


id: PBO:0067416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 530, pseudogene","termid":"PBO:0067416"}


id: PBO:0049287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase alpha 6, pseudogene","termid":"PBO:0049287"}


id: PR:Q9P6R6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP synthase subunit delta, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR13822:SF1","OMA:SCHPO03536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase subunit delta, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13E7.04","secondary_identifiers":["UniProtKB:Q9P6R6"],"synonyms":[{"name":"F-ATPase delta subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ATP5D","type":"exact"}],"termid":"PR:Q9P6R6"}


id: GO:0044162
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a host cell cytoplasmic vesicle.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell membrane","termid":"GO:0033644"},{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"},{"relation_name":"part_of","term_name":"host cell cytoplasmic vesicle","termid":"GO:0044161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell cytoplasmic vesicle membrane","termid":"GO:0044162"}


id: PBO:0044548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"death associated protein 3 pseudogene 2","termid":"PBO:0044548"}


id: PBO:0026746
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_polyubiquitination_during_cellular_response_to_UV","termid":"PBO:0026746"}


id: GO:0047615
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: actinomycin + H2O = actinomycinic monolactone.","definition_xrefs":["MetaCyc:ACTINOMYCIN-LACTONASE-RXN","EC:3.1.1.39"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"actinomycin lactonase activity","synonyms":[{"name":"actinomycin lactonohydrolase activity","type":"related"}],"termid":"GO:0047615"}


id: GO:0048589
data:
  {"annotated_genes":["SJAG_04509","SJAG_02169","SJAG_00514","SJAG_02392","SJAG_01017","SJAG_03581","SJAG_00244"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91900,85895,90620],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0051519"},{"annotations":[83925,90059],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042815"},{"annotations":[86756],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0051517"},{"annotations":[111210],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0051516"}]},"cv_name":"biological_process","definition":"The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth","termid":"GO:0040007"},{"relation_name":"part_of","term_name":"developmental process","termid":"GO:0032502"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00514":null,"SJAG_01017":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_03581":null,"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"developmental growth","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0048589","terms_by_termid":{"GO:0042815":null,"GO:0051516":null,"GO:0051517":null,"GO:0051519":null}}


id: PR:O94491
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dal51 gene.","definition_xrefs":["UniProtKB:O94491","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C417.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC417.10","synonyms":[{"name":"Spom972h-dal51","type":"exact"}],"termid":"PR:O94491"}


id: GO:0032614
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interleukin-11 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"interleukin-11 production","secondary_identifiers":["GO:0072609","GO:0042230"],"synonyms":[{"name":"IL-11 production","type":"exact"},{"name":"interleukin-11 biosynthetic process","type":"narrow"},{"name":"interleukin-11 secretion","type":"narrow"}],"termid":"GO:0032614"}


id: FYPO:0007466
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which methylation of lysine at position 9 of histone H3 is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone methylation","termid":"FYPO:0006870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0002274","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal histone H3-K9 methylation","synonyms":[{"name":"abnormal histone H3 K9 methylation","type":"exact"},{"name":"abnormal histone H3K9me","type":"exact"},{"name":"abnormal histone lysine H3 K9 methylation","type":"exact"}],"termid":"FYPO:0007466"}


id: PBO:0079614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 J2","termid":"PBO:0079614"}


id: FYPO:0000536
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein secretion is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein transport during vegetative growth","termid":"FYPO:0000540"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein secretion during vegetative growth","synonyms":[{"name":"abnormal protein secretion during mitotic cell cycle","type":"related"},{"name":"protein secretion: abnormal","type":"related"}],"termid":"FYPO:0000536"}


id: GO:0098674
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of the neuronal dense core vesicle membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of dense core granule membrane","termid":"GO:0098922"},{"relation_name":"part_of","term_name":"neuronal dense core vesicle membrane","termid":"GO:0099012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0031410"],"is_obsolete":false,"name":"extrinsic component of neuronal dense core vesicle membrane","termid":"GO:0098674"}


id: PBO:0113508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Twin Cx(9)C protein involved in cytochrome c oxidase organization; organization includes assembly or stability; localizes to the mitochondrial intermembrane space via the Mia40p-Erv1p system; interacts genetically with CYC1 and with cytochrome c oxidase assembly factors; mutation can be complemented by human COA4","termid":"PBO:0113508"}


id: FYPO:0005441
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to one or more microtubules does not occur during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to microtubule during vegetative growth","termid":"FYPO:0003269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to microtubule during mitotic interphase","synonyms":[{"name":"abolished protein localisation to microtubule during mitotic interphase","type":"exact"},{"name":"abolished protein localization to microtubule during interphase during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to microtubule during mitotic interphase during vegetative growth","type":"exact"},{"name":"protein absent from microtubule during mitotic interphase","type":"related"},{"name":"protein localization to microtubule abolished during mitotic interphase","type":"exact"}],"termid":"FYPO:0005441"}


id: MOD:00815
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant with MOD:00151. Remap to MOD:00151.","definition_xrefs":["PubMed:7878465","PubMed:14527393","PubMed:9428520"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00815 molybdopterin (obsolete MOD:00815)","termid":"MOD:00815"}


id: PBO:0073812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC6A14 pseudogene 3","termid":"PBO:0073812"}


id: PBO:0064096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PITX1 antisense RNA 1","termid":"PBO:0064096"}


id: GO:0034633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of retinol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Retinol is vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A.","definition_xrefs":["GOC:mah","GOC:vk","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"},{"relation_name":"is_a","term_name":"terpenoid transport","termid":"GO:0046865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"retinol transport","synonyms":[{"name":"vitamin A1 transport","type":"exact"}],"termid":"GO:0034633"}


id: FYPO:0006859
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of DNA replication is decreased in telomeric regions.","definition_xrefs":["PMID:30796050","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic DNA replication","termid":"FYPO:0001343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000631","FYPO:0000293","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased mitotic DNA replication at telomere","synonyms":[{"name":"decreased DNA replication at telomere during mitotic cell cycle","type":"related"},{"name":"decreased mitotic DNA replication at telomere during vegetative growth","type":"exact"},{"name":"reduced mitotic DNA replication at telomere","type":"exact"}],"termid":"FYPO:0006859"}


id: PBO:0059081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosyl-oligosaccharide glucosidase","termid":"PBO:0059081"}


id: GO:0031858
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a pituitary adenylate cyclase-activating polypeptide receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"pituitary adenylate cyclase-activating polypeptide receptor binding","synonyms":[{"name":"PACAP receptor binding","type":"exact"},{"name":"pituitary adenylate cyclase activating peptide receptor binding","type":"exact"},{"name":"pituitary adenylate cyclase-activating peptide receptor ligand","type":"narrow"}],"termid":"GO:0031858"}


id: PBO:0079896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome c reductase complex assembly factor 5","termid":"PBO:0079896"}


id: PBO:0054518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1918","termid":"PBO:0054518"}


id: GO:0099609
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the side of a microtubule.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule binding","termid":"GO:0008017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008017"}],"interesting_parent_ids":["GO:0008017","GO:0003674","GO:0008092","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"microtubule lateral binding","termid":"GO:0099609"}


id: PBO:0063705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidoglycan recognition protein 4","termid":"PBO:0063705"}


id: GO:0019485
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of beta-alanine into other compounds, including L-alanine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-alanine catabolic process","termid":"GO:0019484"},{"relation_name":"is_a","term_name":"L-alanine metabolic process","termid":"GO:0042851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"beta-alanine catabolic process to L-alanine","synonyms":[{"name":"beta-alanine breakdown to L-alanine","type":"exact"},{"name":"beta-alanine degradation to L-alanine","type":"exact"}],"termid":"GO:0019485"}


id: PBO:0052301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH and NYN domain containing","termid":"PBO:0052301"}


id: GO:0052239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical within a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative chemotaxis in other organism involved in symbiotic interaction (obsolete GO:0052239)","synonyms":[{"name":"negative chemotaxis in other organism during symbiotic interaction","type":"related"},{"name":"negative chemotaxis within other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052239"}


id: PR:Q09175
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- krp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dibasic-processing endoprotease (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.09c","synonyms":[{"name":"KEX2-related protease (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-krp1","type":"exact"}],"termid":"PR:Q09175"}


id: PBO:0036375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial PPR repeat protein Ppr10","termid":"PBO:0036375"}


id: PBO:0054695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2104","termid":"PBO:0054695"}


id: SO:0001681
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory region that is involved in the control of the process of recombination.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory_region","termid":"SO:0005836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recombination_regulatory_region","synonyms":[{"name":"recombination regulatory region","type":"exact"}],"termid":"SO:0001681"}


id: GO:2000908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glucomannan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glucomannan catabolic process","termid":"GO:2000898"},{"relation_name":"is_a","term_name":"positive regulation of mannan catabolic process","termid":"GO:2000996"},{"relation_name":"positively_regulates","term_name":"glucomannan catabolic process","termid":"GO:2000884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"positive regulation of glucomannan catabolic process","synonyms":[{"name":"positive regulation of glucomannan catabolism","type":"exact"}],"termid":"GO:2000908"}


id: FYPO:0002293
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which cells in the population are viable, and some cells are curved along the long axis.","definition_xrefs":["PomBase:jh","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete viable mixed population including curved cells (obsolete FYPO:0002293)","termid":"FYPO:0002293"}


id: GO:2000736
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of stem cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"stem cell differentiation","termid":"GO:0048863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of stem cell differentiation","termid":"GO:2000736"}


id: GO:0060918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of auxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Auxins are a group of plant hormones that regulates aspects of plant growth.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone transport","termid":"GO:0009914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"auxin transport","termid":"GO:0060918"}


id: GO:2001015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of skeletal muscle cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"is_a","term_name":"regulation of skeletal muscle cell differentiation","termid":"GO:2001014"},{"relation_name":"negatively_regulates","term_name":"skeletal muscle cell differentiation","termid":"GO:0035914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of skeletal muscle cell differentiation","termid":"GO:2001015"}


id: PBO:0064145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PBX/knotted 1 homeobox 2","termid":"PBO:0064145"}


id: GO:0004936
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of alpha-adrenergic receptors.","definition_xrefs":["GOC:mah","IUPHAR_GPCR:1274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adrenergic receptor activity","termid":"GO:0004935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"alpha-adrenergic receptor activity","synonyms":[{"name":"alpha adrenoceptor","type":"exact"}],"termid":"GO:0004936"}


id: PBO:0030997
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_chromosome_morphology","termid":"PBO:0030997"}


id: PR:P32372
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rad4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P32372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-M checkpoint control protein rad4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C4.18c","synonyms":[{"name":"P74 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rad4","type":"exact"},{"name":"protein cut5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P32372"}


id: GO:0030857
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of epithelial cell differentiation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation","termid":"GO:0030856"},{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"negatively_regulates","term_name":"epithelial cell differentiation","termid":"GO:0030855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of epithelial cell differentiation","synonyms":[{"name":"down regulation of epithelial cell differentiation","type":"exact"},{"name":"down-regulation of epithelial cell differentiation","type":"exact"},{"name":"downregulation of epithelial cell differentiation","type":"exact"},{"name":"inhibition of epithelial cell differentiation","type":"narrow"}],"termid":"GO:0030857"}


id: FYPO:0006861
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which an RNA is observed in a particular location where it is not normally found.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular physical quality phenotype during vegetative growth","termid":"FYPO:0001321"},{"relation_name":"output_of","term_name":"abnormal RNA localization during vegetative growth","termid":"FYPO:0000360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"mislocalized RNA during vegetative growth","synonyms":[{"name":"mislocalised RNA during vegetative growth","type":"exact"},{"name":"mislocalized RNA during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006861"}


id: GO:0050131
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an N-methyl-L-amino acid + H2O + O2 = an L-amino acid + formaldehyde + H2O2.","definition_xrefs":["EC:1.5.3.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor","termid":"GO:0016647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"N-methyl-L-amino-acid oxidase activity","secondary_identifiers":["RHEA:11472","MetaCyc:N-METHYL-L-AMINO-ACID-OXIDASE-RXN"],"synonyms":[{"name":"N-methyl-L-amino-acid:oxygen oxidoreductase (demethylating)","type":"related"},{"name":"N-methylamino acid oxidase activity","type":"related"}],"termid":"GO:0050131"}


id: GO:1901486
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Positive regulation of transcription factor catabolism that results in negative regulation of the SREBP signaling pathway.","definition_xrefs":["GOC:TermGenie","GOC:vw","PMID:22833559"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process (obsolete GO:1901486)","synonyms":[{"name":"negative regulation of SREBP signaling pathway by positive regulation of SREBP degradation","type":"narrow"},{"name":"negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolism","type":"exact"},{"name":"negative regulation of SREBP-mediated signaling pathway by positive regulation of transcription factor catabolic process","type":"exact"},{"name":"negative regulation of SREBP-mediated signalling pathway by positive regulation of transcription factor catabolic process","type":"exact"}],"termid":"GO:1901486"}


id: SO:0000455
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that encodes an mRNA with a frameshift.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"frameshift","termid":"SO:0000865"},{"relation_name":"is_a","term_name":"protein_coding_gene","termid":"SO:0001217"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_with_mRNA_with_frameshift","synonyms":[{"name":"gene with mRNA with frameshift","type":"exact"}],"termid":"SO:0000455"}


id: GO:0071938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement any form of vitamin A into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Vitamin A is any of several retinoid derivatives of beta-carotene, primarily retinol, retinal, or retinoic acid.","definition_xrefs":["PMID:1924551","GOC:mah","PMID:16011460"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid transport","termid":"GO:0046865"},{"relation_name":"is_a","term_name":"vitamin transport","termid":"GO:0051180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"vitamin A transport","synonyms":[{"name":"vitamin A uptake and transport","type":"related"}],"termid":"GO:0071938"}


id: GO:0019416
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the conversion of thiosulfate to tetrathionate, using cytochrome c as an electron acceptor.","definition_xrefs":["MetaCyc:THIOSULFOX-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"polythionate oxidation","termid":"GO:0019416"}


id: PBO:0083643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Elongase; involved in fatty acid and sphingolipid biosynthesis; synthesizes very long chain 20-26-carbon fatty acids from C18-CoA primers; involved in regulation of sphingolipid biosynthesis; lethality of the elo2 elo3 double null mutation is functionally complemented by human ELOVL1 and weakly complemented by human ELOVL3 or ELOV7","termid":"PBO:0083643"}


id: PBO:0017076
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase P enzyme-substrate contact points identified using pre-tRNAs with modified bases","termid":"PBO:0017076"}


id: GO:1900847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of naphtho-gamma-pyrone biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of naphtho-gamma-pyrone biosynthetic process","termid":"GO:1900846"},{"relation_name":"negatively_regulates","term_name":"naphtho-gamma-pyrone biosynthetic process","termid":"GO:1900787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of naphtho-gamma-pyrone biosynthetic process","synonyms":[{"name":"down regulation of naphtho-gamma-pyrone biosynthetic process","type":"exact"},{"name":"down-regulation of naphtho-gamma-pyrone biosynthetic process","type":"exact"},{"name":"downregulation of naphtho-gamma-pyrone biosynthetic process","type":"exact"},{"name":"inhibition of naphtho-gamma-pyrone biosynthetic process","type":"narrow"}],"termid":"GO:1900847"}


id: PBO:0055846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat, Ig-like and transmembrane domains 2","termid":"PBO:0055846"}


id: GO:1901867
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ecgonine methyl ester.","definition_xrefs":["GOC:TermGenie","PMID:22665766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tropane alkaloid metabolic process","termid":"GO:0046448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ecgonine methyl ester metabolic process","synonyms":[{"name":"ecgonine methyl ester metabolism","type":"exact"}],"termid":"GO:1901867"}


id: PBO:0046030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2D","termid":"PBO:0046030"}


id: MOD:01890
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an N-formyl-L-methionine residue and an L-histidine residue to form N-[(L-histidin-1'-yl)methyl]-L-methionine.","definition_xrefs":["PubMed:19622680","RESID:AA0566#FMET"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked L-histidine residue","termid":"MOD:02048"},{"relation_name":"is_a","term_name":"crosslinked N-formyl-L-methionine residue","termid":"MOD:02062"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet)","synonyms":[{"name":"(2S)-2-([(4-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-1-yl)methyl]amino)-4-(methylsulfanyl)butanoic acid","type":"exact"},{"name":"N-[(L-histidin-1'-yl)methyl]-L-methionine","type":"exact"}],"termid":"MOD:01890"}


id: GO:0102076
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-carotene + O2 = 10'-apo-beta-carotenal + beta-ionone.","definition_xrefs":["GOC:pz","EC:1.13.11.71"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"beta,beta-carotene-9',10'-cleaving oxygenase activity","secondary_identifiers":["MetaCyc:RXN-10741","RHEA:26389"],"termid":"GO:0102076"}


id: PBO:0004123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB/POZ domain protein Btb2","termid":"PBO:0004123"}


id: PBO:0040428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V0 subunit e2","termid":"PBO:0040428"}


id: GO:1902733
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte that will contribute to the growth of a bone. A chondrocyte is a polymorphic cell that forms cartilage.","definition_xrefs":["GO_REF:0000058","PMID:23212449","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chondrocyte differentiation involved in endochondral bone morphogenesis","termid":"GO:1902738"},{"relation_name":"regulates","term_name":"growth plate cartilage chondrocyte differentiation","termid":"GO:0003418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of growth plate cartilage chondrocyte differentiation","termid":"GO:1902733"}


id: GO:0090658
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A biochemically and structurally distinct domain of the retinal interphotoreceptor matrix that is specifically associated with cone photoreceptor cell inner and outer segments.","definition_xrefs":["PMID:2055688","GOC:mr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"interphotoreceptor matrix","termid":"GO:0033165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cone matrix sheath","termid":"GO:0090658"}


id: PBO:0078696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon AAG) 7-1","termid":"PBO:0078696"}


id: PBO:0081326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 117","termid":"PBO:0081326"}


id: PBO:0015236
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CwP1 Partner","termid":"PBO:0015236"}


id: PBO:0027689
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_multiple_cell_divisions,_branched,_curved,_elongated_cell","termid":"PBO:0027689"}


id: PBO:0072592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RRS1 divergent transcript","termid":"PBO:0072592"}


id: GO:0007224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened.","definition_xrefs":["PMID:15057936","GOC:mah","PMID:15205520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"smoothened signaling pathway","secondary_identifiers":["Wikipedia:Hedgehog_signaling_pathway"],"synonyms":[{"name":"Shh signaling pathway","type":"related"},{"name":"Sonic hedgehog signaling pathway","type":"narrow"},{"name":"hedgehog signaling pathway","type":"exact"},{"name":"hh signaling pathway","type":"narrow"},{"name":"hh signalling pathway","type":"narrow"},{"name":"smoothened signalling pathway","type":"exact"}],"termid":"GO:0007224"}


id: PBO:0050986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intraflagellar transport 70A","termid":"PBO:0050986"}


id: MOD:01504
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Applied Biosystems iTRAQ4plex-116 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ4plex-116 reporter+balance reagent acylated residue","termid":"MOD:01499"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent O-acylated residue","termid":"MOD:01713"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ4plex-116 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"iTRAQ4plex","type":"related"}],"termid":"MOD:01504"}


id: PBO:0026992
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mannose_level_in_glycoprotein_glycan","termid":"PBO:0026992"}


id: PBO:0065149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein arginine methyltransferase 1 pseudogene 1","termid":"PBO:0065149"}


id: MOD:01416
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-isoleucine residue to a dihydroxylated isoleucine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dihydroxylated residue","termid":"MOD:00428"},{"relation_name":"is_a","term_name":"hydroxylated isoleucine","termid":"MOD:01414"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroxylated isoleucine","synonyms":[{"name":"Hy2Ile","type":"exact"}],"termid":"MOD:01416"}


id: FYPO:0000500
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of mitophagy is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitophagy","termid":"FYPO:0007590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased mitophagy","synonyms":[{"name":"decreased autophagy of mitochondrion","type":"exact"},{"name":"mitophagy: decreased","type":"related"},{"name":"reduced mitophagy","type":"exact"}],"termid":"FYPO:0000500"}


id: GO:0008492
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cAMP generating peptide activity (obsolete GO:0008492)","synonyms":[{"name":"cAMP generating peptide activity","type":"exact"},{"name":"cyclic AMP generating peptide activity","type":"exact"}],"termid":"GO:0008492"}


id: PBO:0080971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 8 opposite strand","termid":"PBO:0080971"}


id: PBO:0069340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 600, pseudogene","termid":"PBO:0069340"}


id: GO:0048019
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The activity of a gene product that interacts with a receptor to decrease the ability of the receptor agonist to bind and activate the receptor.","definition_xrefs":["ISBN:0198506732","GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"},{"relation_name":"is_a","term_name":"signaling receptor inhibitor activity","termid":"GO:0030547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0098772","GO:0003674","GO:0140678"],"is_obsolete":false,"name":"receptor antagonist activity","synonyms":[{"name":"receptor ligand activity","type":"broad"}],"termid":"GO:0048019"}


id: PBO:0046206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin B pseudogene 3","termid":"PBO:0046206"}


id: FYPO:0006583
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nuclear periphery is decreased during interphase of the mitotic cell cycle. The nuclear periphery is the portion of the nuclear lumen proximal to the inner nuclear membrane.","definition_xrefs":["PomBase:mah","GO:0034399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to nuclear periphery","termid":"FYPO:0002339"},{"relation_name":"is_a","term_name":"decreased protein localization to nucleus during mitotic interphase","termid":"FYPO:0006642"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to nuclear periphery during mitotic interphase","synonyms":[{"name":"decreased protein localisation to nuclear periphery during mitotic interphase","type":"exact"},{"name":"decreased protein localization to nuclear periphery during interphase during vegetative growth","type":"exact"},{"name":"decreased protein localization to nuclear periphery during interphase of mitotic cell cycle","type":"exact"},{"name":"reduced protein localization to nuclear periphery during mitotic interphase","type":"exact"}],"termid":"FYPO:0006583"}


id: GO:1903576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-arginine stimulus.","definition_xrefs":["GOC:mr","GOC:TermGenie","PMID:6394628","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to amino acid","termid":"GO:0043200"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to L-arginine","termid":"GO:1903576"}


id: PBO:0062112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily C member 11","termid":"PBO:0062112"}


id: PR:Q92398
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pmk1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q92398"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase spm1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC119.08","synonyms":[{"name":"MAP kinase pmk1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"MAP kinase spm1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pmk1","type":"exact"}],"termid":"PR:Q92398"}


id: GO:0042287
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a major histocompatibility complex molecule; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"MHC protein binding","synonyms":[{"name":"major histocompatibility complex binding","type":"exact"},{"name":"major histocompatibility complex ligand","type":"narrow"}],"termid":"GO:0042287"}


id: GO:0050259
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + NADP+ + ribofuranose = D-ribonate + 2 H+ + NADPH.","definition_xrefs":["EC:1.1.1.115","RHEA:11676"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"ribose 1-dehydrogenase (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R01079","MetaCyc:RIBOSE-1-DEHYDROGENASE-NADP+-RXN"],"synonyms":[{"name":"D-ribose dehydrogenase (NADP+)","type":"related"},{"name":"D-ribose:NADP+ 1-oxidoreductase activity","type":"related"},{"name":"NADP-pentose-dehydrogenase activity","type":"related"}],"termid":"GO:0050259"}


id: PBO:0077112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocase of inner mitochondrial membrane 21","termid":"PBO:0077112"}


id: PBO:0078351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (CTC) 17-1","termid":"PBO:0078351"}


id: PBO:0088146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar transporter; exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters; localizes to sites of contact between the vacuole and mitochondria (vCLAMPs)","termid":"PBO:0088146"}


id: PBO:0030360
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_level_during_cellular_response_to_hypoxia","termid":"PBO:0030360"}


id: PBO:0091443
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Staurosporine-related Protein Kinase","termid":"PBO:0091443"}


id: GO:0072353
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of reactive oxygen species, where the change varies according to the age of the cell or organism.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular age-dependent response to reactive oxygen species (obsolete GO:0072353)","termid":"GO:0072353"}


id: PBO:0001585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-ZZ type","termid":"PBO:0001585"}


id: PBO:0053364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 273","termid":"PBO:0053364"}


id: PBO:0057589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 892b","termid":"PBO:0057589"}


id: PBO:0073443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor proline and glutamine rich pseudogene 1","termid":"PBO:0073443"}


id: GO:0031273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the assembly of pseudopodia.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pseudopodium assembly","termid":"GO:0031272"},{"relation_name":"is_a","term_name":"negative regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120033"},{"relation_name":"negatively_regulates","term_name":"pseudopodium assembly","termid":"GO:0031269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of pseudopodium assembly","synonyms":[{"name":"down regulation of pseudopodium formation","type":"related"},{"name":"down-regulation of pseudopodium formation","type":"related"},{"name":"downregulation of pseudopodium formation","type":"related"},{"name":"inhibition of pseudopodium formation","type":"narrow"},{"name":"negative regulation of pseudopodium formation","type":"related"}],"termid":"GO:0031273"}


id: GO:1904309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cordycepin stimulus.","definition_xrefs":["PMID:21597460","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to purine-containing compound","termid":"GO:0014074"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cordycepin","synonyms":[{"name":"response to 3'-deoxyadenosine","type":"exact"}],"termid":"GO:1904309"}


id: PBO:0042835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP20DC antisense RNA 1","termid":"PBO:0042835"}


id: GO:0071174
data:
  {"annotated_genes":["SJAG_03126","SJAG_01837","SJAG_03681","SJAG_00883","SJAG_01330","SJAG_04699","SJAG_02451","SJAG_04259","SJAG_01679","SJAG_04999","SJAG_01082","SJAG_02169","SJAG_01297","SJAG_04884","SJAG_03353","SJAG_04126","SJAG_02336"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112068,104384,100009,109940,95669,86753,110428,103358,108109],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[102435,86755,95515,109944,110656,111720,112851,97884,106045],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007094"},{"annotations":[90241],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0140499"},{"annotations":[112855],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0090267"},{"annotations":[90242],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090266"}]},"cv_name":"biological_process","definition":"A signaling process that contributes to a mitotic cell cycle checkpoint that originates from the spindle and delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and oriented, the completion of anaphase until chromosomes are attached to the spindle, or mitotic exit and cytokinesis when the spindle does not form.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cell cycle checkpoint signaling","termid":"GO:0007093"},{"relation_name":"is_a","term_name":"spindle checkpoint signaling","termid":"GO:0031577"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00883":null,"SJAG_01082":null,"SJAG_01297":null,"SJAG_01330":null,"SJAG_01679":null,"SJAG_01837":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02451":null,"SJAG_03126":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04699":null,"SJAG_04884":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"mitotic spindle checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0072477"],"synonyms":[{"name":"mitotic cell cycle spindle checkpoint","type":"exact"},{"name":"mitotic spindle checkpoint","type":"exact"},{"name":"signal transduction involved in mitotic cell cycle spindle checkpoint","type":"exact"},{"name":"signal transduction involved in mitotic spindle checkpoint","type":"exact"},{"name":"topo II checkpoint","type":"related"},{"name":"topoisomerase II checkpoint","type":"related"}],"termid":"GO:0071174","terms_by_termid":{"GO:0007094":null,"GO:0090266":null,"GO:0090267":null,"GO:0140499":null,"GO:1902426":null}}


id: PBO:0079018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-undetermined (NNN) 1-1","termid":"PBO:0079018"}


id: PBO:0054895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2309","termid":"PBO:0054895"}


id: PBO:0027965
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_dimethylation_at_telomere","termid":"PBO:0027965"}


id: PBO:0089534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-H2B chaperone Nap1","termid":"PBO:0089534"}


id: FYPO:0003549
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype that affects the localization of a protein in a cell during one or both meiotic nuclear divisions. A protein may be observed in a place where it is not normally found, absent from a place where it is normally found, or both.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during meiotic cell cycle","termid":"FYPO:0004094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein localization during meiosis","synonyms":[{"name":"abnormal cellular protein localisation during meiosis","type":"exact"},{"name":"abnormal cellular protein localization during meiosis","type":"exact"},{"name":"abnormal protein localisation during meiosis","type":"exact"},{"name":"abnormal protein localization during meiotic nuclear division","type":"exact"}],"termid":"FYPO:0003549"}


id: PBO:0081646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF571 antisense RNA 1","termid":"PBO:0081646"}


id: GO:1900300
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of laminarabiose transport.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of laminarabiose transport (obsolete GO:1900300)","termid":"GO:1900300"}


id: GO:0017118
data:
  {"annotated_genes":["SJAG_01164"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101352],"is_not":false,"summary":null,"term":"GO:0017118"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-lipoyl-5'-AMP + L-lysyl-[lipoyl-carrier protein] = (R)-N6-lipoyl-L-lysyl-[lipoyl-carrier protein] + AMP + 2 H+.","definition_xrefs":["RHEA:20473","PMID:10103005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01164":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"lipoyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0017118","terms_by_termid":{"GO:0017118":null}}


id: PATO:0001434
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organismal quality","termid":"PATO:0001995"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reproductive quality","termid":"PATO:0001434"}


id: PR:Q9HGN3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A syntaxin-6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12380:SF10","PRO:DNx","OMA:SCHPO03260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"t-SNARE affecting a late Golgi compartment protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36B7.07","secondary_identifiers":["UniProtKB:Q9HGN3"],"synonyms":[{"name":"Spom972h-STX6","type":"exact"},{"name":"syntaxin tlg1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HGN3"}


id: GO:0070244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of thymocyte death by apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell apoptotic process","termid":"GO:0070233"},{"relation_name":"is_a","term_name":"regulation of thymocyte apoptotic process","termid":"GO:0070243"},{"relation_name":"negatively_regulates","term_name":"thymocyte apoptotic process","termid":"GO:0070242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of thymocyte apoptotic process","synonyms":[{"name":"down regulation of thymocyte apoptosis","type":"exact"},{"name":"down-regulation of thymocyte apoptosis","type":"exact"},{"name":"downregulation of thymocyte apoptosis","type":"exact"},{"name":"inhibition of thymocyte apoptosis","type":"narrow"},{"name":"negative regulation of immature T cell apoptosis","type":"related"},{"name":"negative regulation of thymocyte apoptosis","type":"narrow"}],"termid":"GO:0070244"}


id: PBO:0055117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2536","termid":"PBO:0055117"}


id: PBO:0041550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 18 open reading frame 63","termid":"PBO:0041550"}


id: PBO:0082026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger ZZ-type containing 3","termid":"PBO:0082026"}


id: PBO:0044774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 55 pseudogene 1","termid":"PBO:0044774"}


id: GO:0106435
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a carboxylic ester + H2O = a carboxylate + an alcohol + H+.","definition_xrefs":["RHEA:21164"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003674","GO:0016788","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"carboxylesterase activity","secondary_identifiers":["Reactome:R-HSA-9619024","MetaCyc:CARBOXYLESTERASE-RXN","EC:3.1.1.1","Reactome:R-HSA-9749647","Reactome:R-HSA-9727567"],"synonyms":[{"name":"B-esterase activity","type":"narrow"},{"name":"ali-esterase activity","type":"related"},{"name":"alpha-carboxylesterase activity","type":"narrow"},{"name":"cocaine esterase","type":"narrow"},{"name":"nonspecific carboxylesterase activity","type":"related"},{"name":"procaine esterase","type":"narrow"},{"name":"serine esterase activity","type":"narrow"},{"name":"triacetin esterase","type":"narrow"},{"name":"vitamin A esterase","type":"narrow"}],"termid":"GO:0106435"}


id: GO:0002711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of T cell mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of lymphocyte mediated immunity","termid":"GO:0002708"},{"relation_name":"is_a","term_name":"regulation of T cell mediated immunity","termid":"GO:0002709"},{"relation_name":"is_a","term_name":"positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002824"},{"relation_name":"positively_regulates","term_name":"T cell mediated immunity","termid":"GO:0002456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T cell mediated immunity","synonyms":[{"name":"activation of T cell mediated immunity","type":"narrow"},{"name":"positive regulation of T lymphocyte mediated immunity","type":"exact"},{"name":"positive regulation of T-cell mediated immunity","type":"exact"},{"name":"positive regulation of T-lymphocyte mediated immunity","type":"exact"},{"name":"stimulation of T cell mediated immunity","type":"narrow"},{"name":"up regulation of T cell mediated immunity","type":"exact"},{"name":"up-regulation of T cell mediated immunity","type":"exact"},{"name":"upregulation of T cell mediated immunity","type":"exact"}],"termid":"GO:0002711"}


id: GO:2000244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of FtsZ-dependent cytokinesis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokinesis","termid":"GO:0032465"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"FtsZ-dependent cytokinesis","termid":"GO:0043093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"regulation of FtsZ-dependent cytokinesis","synonyms":[{"name":"regulation of prokaryote-type cytokinesis","type":"related"},{"name":"regulation of prokaryotic fission","type":"related"}],"termid":"GO:2000244"}


id: GO:0080004
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a thalian-diol = a desaturated thalian-diol. This reaction is the introduction of a double bond to a thalian-diol molecule at carbon 15.","definition_xrefs":["PMID:18356490"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"thalian-diol desaturase activity","secondary_identifiers":["MetaCyc:RXN-9637"],"termid":"GO:0080004"}


id: FYPO:0001375
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115588],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}],"single_locus_phenotype":[{"annotations":[115430],"is_not":false,"summary":null,"term":"FYPO:0001375"},{"annotations":[115577,115589,115585,115578],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein does not localize to, and is therefore absent from, a place where it is normally found.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization","termid":"FYPO:0001370"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_01665":null,"SJAG_01745":null,"SJAG_02392":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_04498":null,"SJAG_05207":null},"genotype_count":3,"genotypes_by_uniquename":{"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02392","SJAG_01143"],"name":"abolished protein localization","references_by_uniquename":{"PMID:25866389":null,"PMID:32243490":null},"single_locus_annotated_genes":["SJAG_01143","SJAG_01745"],"single_locus_genotype_uniquenames":["lem2delta","mid1delta"],"synonyms":[{"name":"protein absent from specific location in cell","type":"related"},{"name":"protein localisation abolished","type":"exact"},{"name":"protein localization abolished","type":"exact"}],"termid":"FYPO:0001375","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0001375":null,"FYPO:0007177":null}}


id: PBO:0084761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial methionyl-tRNA synthetase (MetRS); functions as a monomer in mitochondrial protein synthesis; functions similarly to cytoplasmic MetRS although the cytoplasmic form contains a zinc-binding domain not found in Msm1p","termid":"PBO:0084761"}


id: GO:0021874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of the target cell that contributes to the self renewal of neuroblasts in the forebrain.","definition_xrefs":["GOC:dgh","GOC:dph","GOC:jid","GO_REF:0000021","GOC:cls","PMID:16226447"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Wnt signaling pathway","termid":"GO:0016055"},{"relation_name":"part_of","term_name":"forebrain neuroblast division","termid":"GO:0021873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Wnt signaling pathway involved in forebrain neuroblast division","synonyms":[{"name":"Wnt receptor signaling pathway involved in forebrain neuroblast division","type":"exact"},{"name":"Wnt receptor signalling pathway in forebrain neuroblast division","type":"exact"},{"name":"Wnt-activated signaling pathway involved in forebrain neuroblast division","type":"exact"}],"termid":"GO:0021874"}


id: PBO:0001227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit (predicted)","termid":"PBO:0001227"}


id: PR:O60178
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nta1 gene.","definition_xrefs":["UniProtKB:O60178","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein N-terminal amidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC23E6.03c","synonyms":[{"name":"NT-amidase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-nta1","type":"exact"}],"termid":"PR:O60178"}


id: PBO:0063194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate cancer associated transcript 7","termid":"PBO:0063194"}


id: _global:causally_upstream_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q.","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_upstream_of_or_within","termid":"_global:causally_upstream_of_or_within"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"precedes","termid":"_global:precedes"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causally_upstream_of","secondary_identifiers":["RO:0002411"],"termid":"_global:causally_upstream_of"}


id: GO:0008164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete organophosphorus resistance (obsolete GO:0008164)","synonyms":[{"name":"organophosphorus resistance","type":"exact"}],"termid":"GO:0008164"}


id: GO:0045212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of neurotransmitter receptors.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete neurotransmitter receptor biosynthetic process (obsolete GO:0045212)","synonyms":[{"name":"neurotransmitter receptor anabolism","type":"exact"},{"name":"neurotransmitter receptor biosynthesis","type":"exact"},{"name":"neurotransmitter receptor formation","type":"exact"},{"name":"neurotransmitter receptor synthesis","type":"exact"}],"termid":"GO:0045212"}


id: GO:0048475
data:
  {"annotated_genes":["SJAG_02539","SJAG_03153","SJAG_02805","SJAG_01809","SJAG_04609","SJAG_04002","SJAG_00104","SJAG_04644","SJAG_04931","SJAG_04391","SJAG_04565","SJAG_03907","SJAG_04517","SJAG_00284","SJAG_05344","SJAG_02282","SJAG_00192","SJAG_02453","SJAG_05345","SJAG_00800","SJAG_02349","SJAG_00906","SJAG_00379","SJAG_00108","SJAG_02177","SJAG_03558","SJAG_04474","SJAG_03726","SJAG_00072","SJAG_01167","SJAG_02482","SJAG_01508","SJAG_04569","SJAG_04070","SJAG_02234"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[109153,115056,108932,97208],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030121"},{"annotations":[92323,104461,107799,107739],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030122"},{"annotations":[92185,107639,90225,84936],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030123"},{"annotations":[107642],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030131"},{"annotations":[90931,109057],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030130"},{"annotations":[90932],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071439"},{"annotations":[111038,114665],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030125"},{"annotations":[94527,100234,113579,112546,94616,99372,89253,109907,103247],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030126"},{"annotations":[89389,108863,106342,74000,91561,102677,70461,104856,112767,108123],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030127"}]},"cv_name":"cellular_component","definition":"A single or double lipid bilayer with any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane","termid":"GO:0016020"}],"gene_count":35,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_00104":null,"SJAG_00108":null,"SJAG_00192":null,"SJAG_00284":null,"SJAG_00379":null,"SJAG_00800":null,"SJAG_00906":null,"SJAG_01167":null,"SJAG_01508":null,"SJAG_01809":null,"SJAG_02177":null,"SJAG_02234":null,"SJAG_02282":null,"SJAG_02349":null,"SJAG_02453":null,"SJAG_02482":null,"SJAG_02539":null,"SJAG_02805":null,"SJAG_03153":null,"SJAG_03558":null,"SJAG_03726":null,"SJAG_03907":null,"SJAG_04002":null,"SJAG_04070":null,"SJAG_04391":null,"SJAG_04474":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04569":null,"SJAG_04609":null,"SJAG_04644":null,"SJAG_04931":null,"SJAG_05344":null,"SJAG_05345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"coated membrane","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0048475","terms_by_termid":{"GO:0030121":null,"GO:0030122":null,"GO:0030123":null,"GO:0030125":null,"GO:0030126":null,"GO:0030127":null,"GO:0030130":null,"GO:0030131":null,"GO:0071439":null}}


id: GO:0007142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell cycle process comprising the steps by which a cell progresses through male meiosis II, the second meiotic division in the male germline.","definition_xrefs":["GOC:mah","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis II","termid":"GO:0007135"},{"relation_name":"is_a","term_name":"male meiotic nuclear division","termid":"GO:0007140"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0140013","GO:0007049"],"is_obsolete":false,"name":"male meiosis II","synonyms":[{"name":"male meiosis II nuclear division","type":"exact"}],"termid":"GO:0007142"}


id: PBO:0079398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TUBB4B pseudogene 5","termid":"PBO:0079398"}


id: PBO:0034290
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_target_end_location","termid":"PBO:0034290"}


id: PBO:0018266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitosis-specific spindle pole body WD repeat protein Wdr8","termid":"PBO:0018266"}


id: PR:Q9USN8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serologically defined colon cancer antigen 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR15239:SF0","PRO:DNx","OMA:SCHPO04637"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome quality control complex subunit 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC132.01c","secondary_identifiers":["UniProtKB:Q9USN8"],"synonyms":[{"name":"Spom972h-NEMF","type":"exact"},{"name":"microtubule regulator protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USN8"}


id: PBO:0004434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnesium ion transporter Mrs2 (predicted)","termid":"PBO:0004434"}


id: GO:0046951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Biosynthesis involves the formation of hydroxymethylglutaryl-CoA, which is cleaved to acetate and acetyl-CoA.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular biosynthetic process","termid":"GO:0044249"},{"relation_name":"is_a","term_name":"small molecule biosynthetic process","termid":"GO:0044283"},{"relation_name":"is_a","term_name":"cellular ketone body metabolic process","termid":"GO:0046950"},{"relation_name":"is_a","term_name":"fatty acid derivative biosynthetic process","termid":"GO:1901570"},{"relation_name":"is_a","term_name":"ketone body metabolic process","termid":"GO:1902224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006091","GO:0006629"],"is_obsolete":false,"name":"ketone body biosynthetic process","synonyms":[{"name":"ketone body anabolism","type":"exact"},{"name":"ketone body biosynthesis","type":"exact"},{"name":"ketone body formation","type":"exact"},{"name":"ketone body synthesis","type":"exact"}],"termid":"GO:0046951"}


id: GO:0048674
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process resulting in reformation of a growth cone by the tip of an injured axon, or in collateral sprouting of the axon. Collateral sprouting is the process in which outgrowths develop from the shafts of existing axons.","definition_xrefs":["GOC:dgh","GOC:lm","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collateral sprouting","termid":"GO:0048668"},{"relation_name":"is_a","term_name":"sprouting of injured axon","termid":"GO:0048682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"collateral sprouting of injured axon","termid":"GO:0048674"}


id: PBO:0086324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with similarity to Kre9p; Kre9p is involved in cell wall beta 1,6-glucan synthesis; overproduction suppresses growth defects of a kre9 null mutant; required for propionic acid resistance","termid":"PBO:0086324"}


id: FYPO:0005084
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at ribosomal RNA (rRNA) genes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:21151114","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin at ncRNA gene","termid":"FYPO:0005083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to chromatin at rRNA gene","synonyms":[{"name":"normal protein localisation to chromatin at rRNA gene","type":"exact"},{"name":"normal protein localization to chromatin at rDNA","type":"exact"},{"name":"normal protein localization to chromatin at rRNA gene during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin at rRNA gene during vegetative growth","type":"exact"},{"name":"normal protein localization to chromatin at ribosomal DNA","type":"exact"}],"termid":"FYPO:0005084"}


id: GO:0001912
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of leukocyte mediated cytotoxicity.","definition_xrefs":["GOC:add","ISBN:0781735149","PMID:11911826"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte mediated cytotoxicity","termid":"GO:0001910"},{"relation_name":"is_a","term_name":"positive regulation of leukocyte mediated immunity","termid":"GO:0002705"},{"relation_name":"is_a","term_name":"positive regulation of cell killing","termid":"GO:0031343"},{"relation_name":"positively_regulates","term_name":"leukocyte mediated cytotoxicity","termid":"GO:0001909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of leukocyte mediated cytotoxicity","synonyms":[{"name":"activation of leukocyte mediated cytotoxicity","type":"narrow"},{"name":"positive regulation of immune cell mediated cytotoxicity","type":"exact"},{"name":"positive regulation of leucocyte mediated cytotoxicity","type":"exact"},{"name":"stimulation of leukocyte mediated cytotoxicity","type":"narrow"},{"name":"up regulation of leukocyte mediated cytotoxicity","type":"exact"},{"name":"up-regulation of leukocyte mediated cytotoxicity","type":"exact"},{"name":"upregulation of leukocyte mediated cytotoxicity","type":"exact"}],"termid":"GO:0001912"}


id: PBO:0088375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, tricarboxylic acid Yhm2","termid":"PBO:0088375"}


id: GO:0017185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydroxylation of peptidyl-lysine to form peptidyl-hydroxylysine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein hydroxylation","termid":"GO:0018126"},{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine hydroxylation","termid":"GO:0017185"}


id: GO:0015073
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + 1-phosphatidyl-1D-myo-inositol = ADP + 1-phosphatidyl-1D-myo-inositol 3-phosphate.","definition_xrefs":["EC:2.7.1.137"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphatidylinositol 3-kinase, class I, regulator activity (obsolete GO:0015073)","synonyms":[{"name":"phosphatidylinositol 3-kinase, class I, regulator activity","type":"exact"}],"termid":"GO:0015073"}


id: PBO:0081752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 681","termid":"PBO:0081752"}


id: GO:0019065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.","definition_xrefs":["GOC:bf","ISBN:0781702534","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor-mediated endocytosis","termid":"GO:0006898"},{"relation_name":"is_a","term_name":"endocytosis involved in viral entry into host cell","termid":"GO:0075509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"receptor-mediated endocytosis of virus by host cell","synonyms":[{"name":"receptor mediated endocytosis by host of virus particle","type":"exact"},{"name":"receptor mediated endocytosis of virus by host","type":"exact"},{"name":"receptor mediated endocytosis of virus particle by host","type":"exact"},{"name":"receptor-mediated endocytosis of virus by host","type":"exact"},{"name":"viral entry into host cell via receptor-mediated endocytosis","type":"related"},{"name":"viral receptor mediated endocytosis","type":"exact"},{"name":"virus receptor-mediated endocytosis by host","type":"exact"}],"termid":"GO:0019065"}


id: PBO:0005407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNF2 family helicase Rhp26","termid":"PBO:0005407"}


id: PBO:0028007
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cytoskeleton","termid":"PBO:0028007"}


id: PBO:0066997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA component of signal recognition particle 7SL1","termid":"PBO:0066997"}


id: PBO:0066276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein Y-linked family 1 member K, pseudogene","termid":"PBO:0066276"}


id: PBO:0080611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 45 pseudogene 1","termid":"PBO:0080611"}


id: SO:0001424
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A read produced by pyrosequencing technology.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"read","termid":"SO:0000150"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyrosequenced_read","synonyms":[{"name":"pyorsequenced read","type":"related"}],"termid":"SO:0001424"}


id: GO:0038193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by thromboxane A2 binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:15893915","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"thromboxane A2 signaling pathway","synonyms":[{"name":"TXA(2) receptor signaling","type":"exact"},{"name":"TXA2 signaling","type":"exact"}],"termid":"GO:0038193"}


id: PBO:0038793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase like","termid":"PBO:0038793"}


id: PBO:0082070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase; 3PG dehydrogenase that catalyzes the first step in serine and glycine biosynthesis; also functions as an alpha-ketoglutarate reductase, converting alpha-ketoglutarate to D-2-hydroxyglutarate (D-2HG); localizes to the cytoplasm; SER33 has a paralog, SER3, that arose from the whole genome duplication","termid":"PBO:0082070"}


id: PBO:0034742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication ATPase Mgs1 (predicted)","termid":"PBO:0034742"}


id: PBO:0044244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cut like homeobox 1","termid":"PBO:0044244"}


id: PBO:0077967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (AGC) 19-1","termid":"PBO:0077967"}


id: PBO:0049174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth factor receptor bound protein 7","termid":"PBO:0049174"}


id: PBO:0043158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 26","termid":"PBO:0043158"}


id: PBO:0011123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanyl-nucleotide exchange factor Syt22","termid":"PBO:0011123"}


id: GO:0005590
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin.","definition_xrefs":["ISBN:0721639976","PMID:19693541"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anchoring collagen complex","termid":"GO:0030934"},{"relation_name":"part_of","term_name":"collagen type VII anchoring fibril","termid":"GO:0098652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"collagen type VII trimer","termid":"GO:0005590"}


id: PBO:0046606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K9, member 8","termid":"PBO:0046606"}


id: GO:0097603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of an ion by a channel that opens in response to a temperature stimulus (e.g. exposure to a temperature range different than the optimal temperature for that organism).","definition_xrefs":["GOC:ha","GOC:pr","PMID:23027824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion channel activity","termid":"GO:0005216"},{"relation_name":"is_a","term_name":"gated channel activity","termid":"GO:0022836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"temperature-gated ion channel activity","synonyms":[{"name":"heat-activated ion channel activity","type":"narrow"},{"name":"temperature gated ion channel activity","type":"exact"},{"name":"temperature-activated ion channel activity","type":"exact"},{"name":"temperature-dependent ion channel activity","type":"exact"}],"termid":"GO:0097603"}


id: GO:0031416
data:
  {"annotated_genes":["SJAG_03045","SJAG_01826"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[98662,111508],"is_not":false,"summary":null,"term":"GO:0031416"}]},"cv_name":"cellular_component","definition":"A conserved complex that catalyzes the transfer of an acetyl group to the N-terminal residue of a protein acceptor molecule that has a Met-Glu, Met-Asp, Met-Asn, or Met-Met N-terminus. In Saccharomyces the complex includes Nat3p and Mdm20p.","definition_xrefs":["PMID:12890471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein acetyltransferase complex","termid":"GO:0031414"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01826":null,"SJAG_03045":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"NatB complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"N-terminal acetyltransferase B complex","type":"exact"}],"termid":"GO:0031416","terms_by_termid":{"GO:0031416":null}}


id: PBO:0080251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 14 pseudogene","termid":"PBO:0080251"}


id: GO:0052117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete aerotaxis in host environment (obsolete GO:0052117)","synonyms":[{"name":"aerotaxis in response to host environment","type":"exact"}],"termid":"GO:0052117"}


id: PBO:0063889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class P pseudogene 2","termid":"PBO:0063889"}


id: SO:0001411
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region defined by its disposition to be involved in a biological process.","definition_xrefs":["SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"region","termid":"SO:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biological_region","synonyms":[{"name":"INSDC_misc_feature","type":"broad"},{"name":"INSDC_note:biological_region","type":"exact"},{"name":"biological region","type":"exact"}],"termid":"SO:0001411"}


id: FYPO:0003882
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of cyclosporin A binding by a gene product (usually a protein) in a mutant is increased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"increased cyclosporin A binding","termid":"FYPO:0003882"}


id: PATO:0002371
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A viviparous organism having given birth one time.","definition_xrefs":["wiki:http://en.wikipedia.org/wiki/Parity_(biology)"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parity","termid":"PATO:0002370"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primiparous","termid":"PATO:0002371"}


id: PBO:0060682
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDRG family member 2","termid":"PBO:0060682"}


id: GO:0060170
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the plasma membrane surrounding a cilium.","definition_xrefs":["GOC:rph","GOC:cilia","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection membrane","termid":"GO:0031253"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"ciliary membrane","secondary_identifiers":["GO:0020017"],"synonyms":[{"name":"cilial membrane","type":"exact"},{"name":"cilium membrane","type":"exact"},{"name":"flagellar membrane","type":"narrow"},{"name":"flagellum membrane","type":"narrow"}],"termid":"GO:0060170"}


id: PBO:0058180
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4474","termid":"PBO:0058180"}


id: PBO:0082935
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; functions with J-protein partner Zuo1p; may be involved in the folding of newly-synthesized polypeptide chains; member of the HSP70 family; SSB2 has a paralog, SSB1, that arose from the whole genome duplication","termid":"PBO:0082935"}


id: PBO:0072889
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"strawberry notch homolog 1","termid":"PBO:0072889"}


id: PBO:0065901
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB43, member RAS oncogene family","termid":"PBO:0065901"}


id: GO:0004468
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl phosphate + L-lysine = phosphate + N6-acetyl-L-lysine.","definition_xrefs":["EC:2.3.1.32"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetyltransferase activity","termid":"GO:0008080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"lysine N-acetyltransferase activity, acting on acetyl phosphate as donor","secondary_identifiers":["Reactome:R-HSA-5618328","Reactome:R-HSA-5693001","MetaCyc:LYSINE-N-ACETYLTRANSFERASE-RXN","RHEA:14417"],"synonyms":[{"name":"LAT activity","type":"related"},{"name":"acetyl-phosphate:L-lysine 6-N-acetyltransferase activity","type":"related"},{"name":"acetyl-phosphate:L-lysine N6-acetyltransferase activity","type":"related"},{"name":"lysine N(6)-acetyltransferase activity","type":"related"},{"name":"lysine N6-acetyltransferase activity","type":"related"},{"name":"lysine acetyltransferase activity","type":"exact"}],"termid":"GO:0004468"}


id: PBO:0049451
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GXYLT1 pseudogene 5","termid":"PBO:0049451"}


id: FYPO:0001591
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of histidine into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased amino acid import during vegetative growth","termid":"FYPO:0001360"},{"relation_name":"is_a","term_name":"abnormal histidine import","termid":"FYPO:0001655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"decreased histidine import","synonyms":[{"name":"decreased L-histidine import","type":"exact"},{"name":"decreased L-histidine import across plasma membrane","type":"exact"},{"name":"decreased histidine import during mitotic cell cycle","type":"related"},{"name":"decreased histidine import during vegetative growth","type":"exact"},{"name":"decreased histidine import into cell","type":"exact"},{"name":"decreased histidine uptake","type":"exact"},{"name":"reduced histidine import","type":"exact"}],"termid":"FYPO:0001591"}


id: GO:0061369
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of blood vessel morphogenesis in the testicle.","definition_xrefs":["GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of blood vessel morphogenesis","termid":"GO:2000181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of testicular blood vessel morphogenesis","synonyms":[{"name":"negative regulation of testicular vasculature morphogenesis","type":"broad"}],"termid":"GO:0061369"}


id: GO:1903305
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of regulated secretory pathway.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:12526776","GOC:pad","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of exocytosis","termid":"GO:0017157"},{"relation_name":"regulates","term_name":"regulated exocytosis","termid":"GO:0045055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"regulation of regulated secretory pathway","termid":"GO:1903305"}


id: PBO:0051254
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (III)-22-2 (pseudogene)","termid":"PBO:0051254"}


id: FYPO:0004480
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a calcineurin-dependent response element (CDRE)-containing promoter is decreased during a cellular response to micafungin.","definition_xrefs":["PMID:16928959","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription from RNA polymerase II promoter during vegetative growth","termid":"FYPO:0005229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0000294"],"is_obsolete":false,"name":"decreased transcription from CDRE promoter in response to micafungin","synonyms":[{"name":"decreased transcription from CDRE promoter during cellular response to micafungin","type":"exact"},{"name":"decreased transcription from CDRE promoter in response to micafungin during mitotic cell cycle","type":"related"},{"name":"decreased transcription from CDRE promoter in response to micafungin during vegetative growth","type":"exact"},{"name":"reduced transcription from CDRE promoter in response to micafungin","type":"exact"}],"termid":"FYPO:0004480"}


id: PBO:0071081
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 83","termid":"PBO:0071081"}


id: PBO:0051270
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa joining 1","termid":"PBO:0051270"}


id: PR:P0CT63
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps3002 gene.","definition_xrefs":["UniProtKB:P0CT63","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S30-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19G7.03c","synonyms":[{"name":"Spom972h-rps3002","type":"exact"}],"termid":"PR:P0CT63"}


id: GO:0098657
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id: PBO:0030976
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id: GO:0002950
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an N-acyl-sphingoid base + CDP-ethanolamine = an N-acyl-sphingoid 1-phosphoethanolamine + CMP + H+.","definition_xrefs":["EC:2.7.8.48","PMID:25667419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016780"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016780","GO:0003674"],"is_obsolete":false,"name":"ceramide phosphoethanolamine synthase activity","secondary_identifiers":["RHEA:45896","Reactome:R-HSA-8959462"],"termid":"GO:0002950"}


id: PBO:0003869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper transporting ATPase Ccc2 (predicted)","termid":"PBO:0003869"}


id: PR:O42652
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An aspartate aminotransferase, cytoplasmic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR11879:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartate aminotransferase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC10F6.13c","secondary_identifiers":["UniProtKB:O42652"],"synonyms":[{"name":"SPAC10F6.13c","type":"related"},{"name":"Spom972h-GOT1","type":"exact"},{"name":"transaminase A (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42652"}


id: GO:0033153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which T cell receptor V, D, and J, or V and J gene segments, depending on the specific locus, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS).","definition_xrefs":["GOC:add","ISBN:0781700221"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic recombination of T cell receptor gene segments","termid":"GO:0002681"},{"relation_name":"is_a","term_name":"V(D)J recombination","termid":"GO:0033151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006310","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"T cell receptor V(D)J recombination","synonyms":[{"name":"T cell receptor V(D)J joining","type":"exact"},{"name":"T cell receptor V-D-J joining","type":"narrow"},{"name":"T cell receptor V-D-J recombination","type":"narrow"},{"name":"T cell receptor V-J joining","type":"narrow"},{"name":"T cell receptor V-J recombination","type":"narrow"},{"name":"T-cell receptor V(D)J recombination","type":"exact"},{"name":"TCR V(D)J recombination","type":"exact"}],"termid":"GO:0033153"}


id: PBO:0041499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 12 open reading frame 71","termid":"PBO:0041499"}


id: GO:0140785
data:
  {"annotated_genes":["SJAG_03405"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140786"}]},"cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of an amino acid.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular sensor activity","termid":"GO:0140299"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03405":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140299"}],"interesting_parent_ids":["GO:0140299","GO:0098772","GO:0003674"],"is_obsolete":false,"name":"amino acid sensor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"amino acid sensing activity","type":"exact"}],"termid":"GO:0140785","terms_by_termid":{"GO:0140786":null}}


id: PBO:0083670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endoplasmic reticulum protein of unknown function; physically interacts with Hsp82p; YPL264C is not an essential gene","termid":"PBO:0083670"}


id: PBO:0077652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor superfamily member 1A","termid":"PBO:0077652"}


id: GO:0002576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulated exocytosis","termid":"GO:0045055"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"platelet degranulation","synonyms":[{"name":"platelet exocytosis","type":"exact"}],"termid":"GO:0002576"}


id: FYECO:0000088
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which 2-oxoglutarate was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ 2-OG","synonyms":[{"name":"2-OG present","type":"exact"},{"name":"2-oxoglutarate added","type":"exact"},{"name":"2-oxoglutarate present","type":"exact"}],"termid":"FYECO:0000088"}


id: PBO:0063693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein geranylgeranyltransferase type I subunit beta","termid":"PBO:0063693"}


id: GO:0099558
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that preserves the structural organistation and orientation of a synaptic cellular component such as the synaptic cytoskeleton and molecular scaffolds.","definition_xrefs":["PMID:25611509","GOC:dos","PMID:24449494"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell junction maintenance","termid":"GO:0034331"},{"relation_name":"is_a","term_name":"synapse organization","termid":"GO:0050808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of synapse structure","synonyms":[{"name":"synaptic maintenance","type":"exact"}],"termid":"GO:0099558"}


id: PBO:0017462
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_part_that_occurs_in","termid":"PBO:0017462"}


id: PBO:0030545
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_cAMP_level","termid":"PBO:0030545"}


id: GO:0034516
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B6 stimulus. Vitamin B6 encompasses pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.","definition_xrefs":["GOC:mah","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to vitamin","termid":"GO:0033273"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to vitamin B6","termid":"GO:0034516"}


id: PR:O59732
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cfh4 gene.","definition_xrefs":["UniProtKB:O59732","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitin synthase regulatory factor 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3E7.12c","synonyms":[{"name":"Chs four homolog 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cfh4","type":"exact"}],"termid":"PR:O59732"}


id: PBO:0067861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 163","termid":"PBO:0067861"}


id: PBO:0017710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase involved in depalmitoylation (predicted)","termid":"PBO:0017710"}


id: PBO:0072736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S100 calcium binding protein A1","termid":"PBO:0072736"}


id: PBO:0067005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 11, pseudogene","termid":"PBO:0067005"}


id: FYPO:0004546
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cut phenotype that is observed when a cell is exposed to methyl methanesulfonate. In a cut phenotype, a cell undergoes septation despite abnormal chromosome segregation.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete cut during cellular response to methyl methanesulfonate (obsolete FYPO:0004546)","synonyms":[{"name":"cut during cellular response to MMS","type":"exact"},{"name":"cut during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"cut during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"},{"name":"cut during cellular response to methyl methanesulphonate","type":"exact"}],"termid":"FYPO:0004546"}


id: PATO:0001383
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A polyploidy quality inhering in a bearer by virtue of the bearer's containing five homologous sets of chromosomes.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Pentaploid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyploid","termid":"PATO:0001377"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentaploid","termid":"PATO:0001383"}


id: PBO:0059120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPC1 divergent transcript","termid":"PBO:0059120"}


id: PR:Q09699
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- snf5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF chromatin-remodeling complex subunit snf5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F7.08c","synonyms":[{"name":"SWI/SNF complex subunit snf5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-snf5","type":"exact"}],"termid":"PR:Q09699"}


id: PBO:0054713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2122","termid":"PBO:0054713"}


id: PR:Q09728
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cuf1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09728"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal-binding regulatory protein cuf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.11c","synonyms":[{"name":"Spom972h-cuf1","type":"exact"}],"termid":"PR:Q09728"}


id: GO:0042875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which D-galactonate, the D-enantiomer of galactonate, is transported across a lipid bilayer, from one side of a membrane to the other.","definition_xrefs":["GOC:jsg","GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transmembrane transport","termid":"GO:0034219"},{"relation_name":"is_a","term_name":"aldonate transmembrane transport","termid":"GO:0042873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"D-galactonate transmembrane transport","synonyms":[{"name":"D-galactonate transport","type":"related"}],"termid":"GO:0042875"}


id: PBO:0062075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 6 pseudogene","termid":"PBO:0062075"}


id: PBO:0072849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppressor APC domain containing 2 pseudogene 4","termid":"PBO:0072849"}


id: PBO:0068717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4atac small nuclear 6, pseudogene","termid":"PBO:0068717"}


id: PBO:0012252
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of SIP Complex","termid":"PBO:0012252"}


id: GO:0006099
data:
  {"annotated_genes":["SJAG_03588","SJAG_03920","SJAG_01922","SJAG_02398","SJAG_01524","SJAG_06382","SJAG_01753","SJAG_03163","SJAG_01671","SJAG_03813","SJAG_02464","SJAG_00260","SJAG_01895","SJAG_04843","SJAG_01630"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69691,84850,85218,85947,90498,95545,102851,106266,108220,109355,109610,111131,111912,112731,112937],"is_not":false,"summary":null,"term":"GO:0006099"}]},"cv_name":"biological_process","definition":"A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary metabolic process","termid":"GO:0044238"},{"relation_name":"part_of","term_name":"aerobic respiration","termid":"GO:0009060"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_01524":null,"SJAG_01630":null,"SJAG_01671":null,"SJAG_01753":null,"SJAG_01895":null,"SJAG_01922":null,"SJAG_02398":null,"SJAG_02464":null,"SJAG_03163":null,"SJAG_03588":null,"SJAG_03813":null,"SJAG_03920":null,"SJAG_04843":null,"SJAG_06382":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"tricarboxylic acid cycle","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Tricarboxylic_acid_cycle"],"synonyms":[{"name":"Krebs cycle","type":"exact"},{"name":"TCA cycle","type":"exact"},{"name":"citric acid cycle","type":"exact"},{"name":"oxidative TCA cycle","type":"exact"}],"termid":"GO:0006099","terms_by_termid":{"GO:0006099":null}}


id: GO:0009785
data:
  {"annotated_genes":["SJAG_02860"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65653],"is_not":false,"summary":null,"term":"GO:0009785"}]},"cv_name":"biological_process","definition":"The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm.","definition_xrefs":["GOC:lr","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular receptor signaling pathway","termid":"GO:0030522"},{"relation_name":"is_a","term_name":"cellular response to blue light","termid":"GO:0071483"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02860":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"blue light signaling pathway","references_by_uniquename":{"GO_REF:0000108":null},"synonyms":[{"name":"blue light signalling pathway","type":"exact"}],"termid":"GO:0009785","terms_by_termid":{"GO:0009785":null}}


id: PBO:0067826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 128","termid":"PBO:0067826"}


id: PBO:0052782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 19 pseudogene 6","termid":"PBO:0052782"}


id: PBO:0042699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CUGBP Elav-like family member 1","termid":"PBO:0042699"}


id: PBO:0065944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD1 checkpoint DNA exonuclease","termid":"PBO:0065944"}


id: FYPO:0007800
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the endoplasmic reticulum is abolished, and some of the protein is present at the cell surface instead.","definition_xrefs":["PomBase:mah","PMID:33536395"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to endoplasmic reticulum during vegetative growth","termid":"FYPO:0003777"},{"relation_name":"is_a","term_name":"protein mislocalized to cell surface during vegetative growth","termid":"FYPO:0007799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abolished protein localization to endoplasmic reticulum, with protein mislocalized to cell surface","synonyms":[{"name":"abolished luminal ER protein retention","type":"exact"},{"name":"abolished protein localization to ER, with protein mislocalized to cell surface","type":"exact"},{"name":"abolished protein localization to endoplasmic reticulum, with protein mislocalized to cell surface during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to endoplasmic reticulum, with protein mislocalized to cell surface during vegetative growth","type":"exact"}],"termid":"FYPO:0007800"}


id: GO:0034917
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-methylhex-2-enoyl-CoA + H2O = 3-hydroxy-2-methylhexanoyl-CoA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-methylhex-2-enoyl-CoA hydratase activity (obsolete GO:0034917)","termid":"GO:0034917"}


id: GO:0005216
data:
  {"annotated_genes":["SJAG_00542","SJAG_MIT15","SJAG_00915","SJAG_02019","SJAG_00438","SJAG_01168","SJAG_05229","SJAG_07003","SJAG_05204","SJAG_00048","SJAG_MIT09","SJAG_04668","SJAG_05342","SJAG_02105","SJAG_02532","SJAG_00985","SJAG_02564","SJAG_00133","SJAG_MIT37","SJAG_02598","SJAG_00836","SJAG_01090","SJAG_03895","SJAG_04122","SJAG_04471","SJAG_03114","SJAG_03925","SJAG_02322","SJAG_02877"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91739,113562,110594,88429],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005262"},{"annotations":[92037,105506],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005227"},{"annotations":[107814],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005254"},{"annotations":[95711],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008331"},{"annotations":[99884],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140135"},{"annotations":[91741],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008381"},{"annotations":[90885,97906,99145,103943,115244,88886,89910,89314,115250,104033,104921,88885,112015,99768,101121,85166,115256,99798],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046933"},{"annotations":[88371,88430,95712,110086],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015275"},{"annotations":[85531],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008308"}]},"cv_name":"molecular_function","definition":"Enables the facilitated diffusion of a monoatomic ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).","definition_xrefs":["GOC:cy","GOC:mtg_transport","GOC:pr","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion transmembrane transporter activity","termid":"GO:0015075"},{"relation_name":"is_a","term_name":"channel activity","termid":"GO:0015267"}],"gene_count":29,"genes_by_uniquename":{"SJAG_00048":null,"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_01090":null,"SJAG_01168":null,"SJAG_02019":null,"SJAG_02105":null,"SJAG_02322":null,"SJAG_02532":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_02877":null,"SJAG_03114":null,"SJAG_03895":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_04471":null,"SJAG_04668":null,"SJAG_05204":null,"SJAG_05229":null,"SJAG_05342":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"monoatomic ion channel activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ion channel activity","type":"broad"}],"termid":"GO:0005216","terms_by_termid":{"GO:0005227":null,"GO:0005254":null,"GO:0005262":null,"GO:0008308":null,"GO:0008331":null,"GO:0008381":null,"GO:0015275":null,"GO:0046933":null,"GO:0140135":null}}


id: PBO:0057138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 219a-1","termid":"PBO:0057138"}


id: PATO:0001288
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of red and brown hue and low brightness.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"red brown","termid":"PATO:0001287"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dark red brown","termid":"PATO:0001288"}


id: GO:0016972
data:
  {"annotated_genes":["SJAG_02489","SJAG_00196","SJAG_01647","SJAG_02827","SJAG_03992"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94569,106972,110942],"is_not":false,"summary":null,"term":"GO:0016972"},{"annotations":[93204,99294],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016971"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 R'C(R)SH + O2 = R'C(R)S-S(R)CR' + 2 H2O2.","definition_xrefs":["RHEA:17357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disulfide oxidoreductase activity","termid":"GO:0015036"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor","termid":"GO:0016670"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00196":null,"SJAG_01647":null,"SJAG_02489":null,"SJAG_02827":null,"SJAG_03992":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0015036"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0015036","GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"thiol oxidase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.8.3.2","MetaCyc:THIOL-OXIDASE-RXN","UM-BBD_reactionID:r1293"],"synonyms":[{"name":"sulfhydryl oxidase activity","type":"related"},{"name":"thiol:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0016972","terms_by_termid":{"GO:0016971":null,"GO:0016972":null}}


id: PBO:0085261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peripheral protein of cytosolic face of mitochondrial outer membrane; required for mitochondrial fission; interacts with Fis1p and with the self-assembled oligomeric form of the dynamin-related GTPase Dnm1p; contains WD repeats; MDV1 has a paralog, CAF4, that arose from the whole genome duplication","termid":"PBO:0085261"}


id: GO:0002650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of tolerance induction to self antigen.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of tolerance induction","termid":"GO:0002644"},{"relation_name":"is_a","term_name":"regulation of tolerance induction to self antigen","termid":"GO:0002649"},{"relation_name":"negatively_regulates","term_name":"tolerance induction to self antigen","termid":"GO:0002513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of tolerance induction to self antigen","synonyms":[{"name":"down regulation of tolerance induction to self antigen","type":"exact"},{"name":"down-regulation of tolerance induction to self antigen","type":"exact"},{"name":"downregulation of tolerance induction to self antigen","type":"exact"},{"name":"inhibition of tolerance induction to self antigen","type":"narrow"}],"termid":"GO:0002650"}


id: PBO:0051869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ISL1 divergent transcript","termid":"PBO:0051869"}


id: GO:0045147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the activation, by acetate, of the chemical reactions and pathways resulting in the breakdown of acetate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of acetate catabolic process","termid":"GO:0045734"},{"relation_name":"is_a","term_name":"regulation of response to acetate","termid":"GO:1901457"},{"relation_name":"regulates","term_name":"initiation of acetate catabolic process by acetate","termid":"GO:0045146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"regulation of initiation of acetate catabolic process by acetate","synonyms":[{"name":"regulation of initiation of acetate breakdown by acetate","type":"exact"},{"name":"regulation of initiation of acetate degradation by acetate","type":"exact"}],"termid":"GO:0045147"}


id: PBO:0065483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome activator subunit 2 pseudogene 2","termid":"PBO:0065483"}


id: PBO:0062997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl arginine deiminase 3","termid":"PBO:0062997"}


id: GO:1902496
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any protein binding that is involved in negative regulation of telomere maintenance via telomerase.","definition_xrefs":["GOC:TermGenie","GOC:dph","GOC:vw","PMID:24013504"],"gene_count":0,"genotype_count":0,"name":"obsolete protein binding involved in negative regulation of telomere maintenance via telomerase (obsolete GO:1902496)","synonyms":[{"name":"protein binding involved in down regulation of telomere maintenance via telomerase activity","type":"exact"},{"name":"protein binding involved in down-regulation of telomere maintenance via telomerase activity","type":"exact"},{"name":"protein binding involved in downregulation of telomere maintenance via telomerase activity","type":"exact"},{"name":"protein binding involved in inhibition of telomere maintenance via telomerase","type":"narrow"}],"termid":"GO:1902496"}


id: GO:0046952
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Ketone bodies can be used as an energy source as an alternative to glucose. Utilization of ketone bodies in peripheral tissues involves conversion of acetoacetate to acetoacetyl-CoA, which is then converted to two molecules of acetyl-CoA.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular catabolic process","termid":"GO:0044248"},{"relation_name":"is_a","term_name":"small molecule catabolic process","termid":"GO:0044282"},{"relation_name":"is_a","term_name":"cellular ketone body metabolic process","termid":"GO:0046950"},{"relation_name":"is_a","term_name":"fatty acid derivative catabolic process","termid":"GO:1901569"},{"relation_name":"is_a","term_name":"ketone body metabolic process","termid":"GO:1902224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0006629","GO:0006091","GO:0044281"],"is_obsolete":false,"name":"ketone body catabolic process","secondary_identifiers":["MetaCyc:PWY66-368"],"synonyms":[{"name":"ketolysis","type":"exact"},{"name":"ketone body breakdown","type":"exact"},{"name":"ketone body catabolism","type":"exact"},{"name":"ketone body degradation","type":"exact"},{"name":"utilization of ketone bodies","type":"exact"}],"termid":"GO:0046952"}


id: PBO:0066950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 252","termid":"PBO:0066950"}


id: GO:0030649
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an aminoglycoside antibiotic, any member of a group of broad spectrum antibiotics, of similar toxicity and pharmacology, that contain an aminodeoxysugar, an amino- or guanidino-substituted inositol ring, and one or more residues of other sugars. The group includes streptomycin, neomycin, framycetin, kanamycin, paromomycin, and gentamicin.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside catabolic process","termid":"GO:0016139"},{"relation_name":"is_a","term_name":"antibiotic catabolic process","termid":"GO:0017001"},{"relation_name":"is_a","term_name":"aminoglycoside antibiotic metabolic process","termid":"GO:0030647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aminoglycoside antibiotic catabolic process","synonyms":[{"name":"aminoglycoside antibiotic breakdown","type":"exact"},{"name":"aminoglycoside antibiotic catabolism","type":"exact"},{"name":"aminoglycoside antibiotic degradation","type":"exact"}],"termid":"GO:0030649"}


id: GO:0022028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of cells in the telencephalon from the subventricular zone to the olfactory bulb in which cells move orthogonally to the direction of radial migration and do not use radial glial cell processes as substrates for migration.","definition_xrefs":["GOC:dgh","GOC:jid","GOC:dph","GOC:cls","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telencephalon cell migration","termid":"GO:0022029"},{"relation_name":"part_of","term_name":"olfactory bulb development","termid":"GO:0021772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tangential migration from the subventricular zone to the olfactory bulb","synonyms":[{"name":"rostral migratory stream migration","type":"exact"}],"termid":"GO:0022028"}


id: PBO:0060854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEK2 pseudogene 2","termid":"PBO:0060854"}


id: PBO:0113293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Processivity factor; required for ubiquitination activity of anaphase promoting complex (APC), mediates the activity of APC by contributing to substrate recognition; involved in cyclin proteolysis; contains conserved DOC1 homology domain","termid":"PBO:0113293"}


id: FYPO:0004403
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of JM216 (also called satraplatin) than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0002682"],"is_obsolete":false,"name":"resistance to JM216","synonyms":[{"name":"resistance to JM216 during mitotic cell cycle","type":"related"},{"name":"resistance to JM216 during vegetative growth","type":"exact"},{"name":"resistance to satraplatin","type":"exact"},{"name":"resistant to JM216","type":"exact"}],"termid":"FYPO:0004403"}


id: PBO:0003159
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.5.4.6","termid":"PBO:0003159"}


id: PBO:0065732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PWWP domain containing 3B","termid":"PBO:0065732"}


id: GO:0047039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + scytalone = NADPH + H+ + 1,3,6,8-naphthalenetetrol.","definition_xrefs":["EC:1.1.1.252","MetaCyc:1.1.1.252-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"tetrahydroxynaphthalene reductase activity","secondary_identifiers":["RHEA:21908"],"synonyms":[{"name":"T4HN reductase activity","type":"related"},{"name":"scytalone:NADP+ delta5-oxidoreductase activity","type":"related"}],"termid":"GO:0047039"}


id: GO:0071359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to dsRNA","termid":"GO:0043331"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to dsRNA","synonyms":[{"name":"cellular response to double-stranded RNA","type":"exact"}],"termid":"GO:0071359"}


id: PBO:0001032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk4/ sensor for unfolded proteins in the ER (predicted)","termid":"PBO:0001032"}


id: PBO:0050084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group AT-hook 1 pseudogene 4","termid":"PBO:0050084"}


id: GO:0009264
data:
  {"annotated_genes":["SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95065],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035863"},{"annotations":[95067],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide catabolic process","termid":"GO:0009166"},{"relation_name":"is_a","term_name":"deoxyribonucleotide metabolic process","termid":"GO:0009262"},{"relation_name":"is_a","term_name":"carbohydrate derivative catabolic process","termid":"GO:1901136"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"deoxyribonucleotide catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"deoxyribonucleotide breakdown","type":"exact"},{"name":"deoxyribonucleotide catabolism","type":"exact"},{"name":"deoxyribonucleotide degradation","type":"exact"}],"termid":"GO:0009264","terms_by_termid":{"GO:0035863":null,"GO:0046081":null}}


id: PBO:0071436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 42","termid":"PBO:0071436"}


id: SO:0000122
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A folded RNA sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_secondary_structure","termid":"SO:0000002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA_sequence_secondary_structure","synonyms":[{"name":"RNA sequence secondary structure","type":"exact"}],"termid":"SO:0000122"}


id: PBO:0075937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stabilin 2","termid":"PBO:0075937"}


id: PBO:0068791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 28, pseudogene","termid":"PBO:0068791"}


id: PBO:0029266
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0029266"}


id: GO:0060975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a cardioblast toward the midline to form the heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardioblast migration","termid":"GO:0003260"},{"relation_name":"is_a","term_name":"cell migration to the midline involved in heart development","termid":"GO:0003318"},{"relation_name":"part_of","term_name":"convergent extension involved in organogenesis","termid":"GO:0060029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardioblast migration to the midline involved in heart field formation","synonyms":[{"name":"cardiac progenitor cell midline migration","type":"exact"},{"name":"cardioblast midline convergence","type":"exact"}],"termid":"GO:0060975"}


id: GO:0102838
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:1-2-16:2-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:2-2-16:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:1-2-16:2-monogalactosyldiacylglycerol desaturase activity (obsolete GO:0102838)","termid":"GO:0102838"}


id: GO:0004287
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of Pro-Xaa > Ala-Xaa in oligopeptides.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete prolyl oligopeptidase activity (obsolete GO:0004287)","synonyms":[{"name":"endoprolylpeptidase activity","type":"related"},{"name":"post-proline cleaving enzyme activity","type":"related"},{"name":"post-proline endopeptidase activity","type":"related"},{"name":"proline endopeptidase activity","type":"related"},{"name":"proline-specific endopeptidase activity","type":"related"},{"name":"prolyl endopeptidase activity","type":"related"},{"name":"prolyl oligopeptidase activity","type":"exact"}],"termid":"GO:0004287"}


id: PBO:0075320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"superoxide dismutase 1 pseudogene 2","termid":"PBO:0075320"}


id: PBO:0045276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 27","termid":"PBO:0045276"}


id: PBO:0039353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylmethionine decarboxylase 1 pseudogene 3","termid":"PBO:0039353"}


id: FYECO:0000284
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which thiosulfate was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping limited","termid":"FYECO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ thiosulfate","secondary_identifiers":["PMID:7565608"],"synonyms":[{"name":"+ S2O32-","type":"exact"}],"termid":"FYECO:0000284"}


id: FYPO:0004223
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which monomethylation of lysine at position 20 of histone H4 occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone methylation during vegetative growth","termid":"FYPO:0000869"},{"relation_name":"is_a","term_name":"abnormal histone H4-K20 methylation during vegetative growth","termid":"FYPO:0004215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0001320","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H4-K20 monomethylation during vegetative growth","synonyms":[{"name":"increased histone H4-K20 monomethylation during mitotic cell cycle","type":"related"},{"name":"increased histone H4K20 monomethylation during vegetative growth","type":"exact"},{"name":"increased histone H4K20me1 during vegetative growth","type":"exact"},{"name":"increased histone lysine H4-K20 monomethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0004223"}


id: PBO:0062784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ORAI calcium release-activated calcium modulator 2","termid":"PBO:0062784"}


id: GO:0010765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sodium ion transport","termid":"GO:0002028"},{"relation_name":"is_a","term_name":"positive regulation of monoatomic ion transport","termid":"GO:0043270"},{"relation_name":"positively_regulates","term_name":"sodium ion transport","termid":"GO:0006814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of sodium ion transport","termid":"GO:0010765"}


id: PR:O94593
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC622.03c gene.","definition_xrefs":["UniProtKB:O94593","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C622.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC622.03c","synonyms":[{"name":"Spom972h-SPCC622.03c","type":"exact"}],"termid":"PR:O94593"}


id: GO:1905866
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of Atg1/ULK1 kinase complex assembly.","definition_xrefs":["GOC:TermGenie","PMID:26567215","GOC:autophagy","GOC:mf","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of Atg1/ULK1 kinase complex assembly","termid":"GO:1905864"},{"relation_name":"positively_regulates","term_name":"Atg1/ULK1 kinase complex assembly","termid":"GO:1904745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of Atg1/ULK1 kinase complex assembly","synonyms":[{"name":"activation of ATG1 kinase complex assembly","type":"narrow"},{"name":"activation of ATG1 kinase complex formation","type":"narrow"},{"name":"activation of ATG1-ATG13 complex assembly","type":"narrow"},{"name":"activation of ATG1-ATG13 complex formation","type":"narrow"},{"name":"activation of ATG1/ULK1 kinase complex assembly","type":"narrow"},{"name":"activation of ATG1/ULK1 kinase complex formation","type":"narrow"},{"name":"activation of ATG1/ULK1 signaling complex assembly","type":"narrow"},{"name":"activation of ATG1/ULK1 signaling complex formation","type":"narrow"},{"name":"activation of Atg1p signalling complex assembly","type":"narrow"},{"name":"activation of Atg1p signalling complex formation","type":"narrow"},{"name":"activation of ULK1 signaling complex assembly","type":"narrow"},{"name":"activation of ULK1 signaling complex formation","type":"narrow"},{"name":"activation of ULK1-ATG13-FIP200 complex assembly","type":"narrow"},{"name":"activation of ULK1-ATG13-FIP200 complex formation","type":"narrow"},{"name":"activation of ULK1-ATG13-RB1CC1 complex assembly","type":"narrow"},{"name":"activation of ULK1-ATG13-RB1CC1 complex formation","type":"narrow"},{"name":"positive regulation of ATG1 kinase complex assembly","type":"exact"},{"name":"positive regulation of ATG1 kinase complex formation","type":"exact"},{"name":"positive regulation of ATG1-ATG13 complex assembly","type":"exact"},{"name":"positive regulation of ATG1-ATG13 complex formation","type":"exact"},{"name":"positive regulation of ATG1/ULK1 kinase complex formation","type":"exact"},{"name":"positive regulation of ATG1/ULK1 signaling complex assembly","type":"exact"},{"name":"positive regulation of ATG1/ULK1 signaling complex formation","type":"exact"},{"name":"positive regulation of Atg1p signalling complex assembly","type":"exact"},{"name":"positive regulation of Atg1p signalling complex formation","type":"exact"},{"name":"positive regulation of ULK1 signaling complex assembly","type":"exact"},{"name":"positive regulation of ULK1 signaling complex formation","type":"exact"},{"name":"positive regulation of ULK1-ATG13-FIP200 complex assembly","type":"exact"},{"name":"positive regulation of ULK1-ATG13-FIP200 complex formation","type":"exact"},{"name":"positive regulation of ULK1-ATG13-RB1CC1 complex assembly","type":"exact"},{"name":"positive regulation of ULK1-ATG13-RB1CC1 complex formation","type":"exact"},{"name":"up regulation of ATG1 kinase complex assembly","type":"exact"},{"name":"up regulation of ATG1 kinase complex formation","type":"exact"},{"name":"up regulation of ATG1-ATG13 complex assembly","type":"exact"},{"name":"up regulation of ATG1-ATG13 complex formation","type":"exact"},{"name":"up regulation of ATG1/ULK1 kinase complex assembly","type":"exact"},{"name":"up regulation of ATG1/ULK1 kinase complex formation","type":"exact"},{"name":"up regulation of ATG1/ULK1 signaling complex assembly","type":"exact"},{"name":"up regulation of ATG1/ULK1 signaling complex formation","type":"exact"},{"name":"up regulation of Atg1p signalling complex assembly","type":"exact"},{"name":"up regulation of Atg1p signalling complex formation","type":"exact"},{"name":"up regulation of ULK1 signaling complex assembly","type":"exact"},{"name":"up regulation of ULK1 signaling complex formation","type":"exact"},{"name":"up regulation of ULK1-ATG13-FIP200 complex assembly","type":"exact"},{"name":"up regulation of ULK1-ATG13-FIP200 complex formation","type":"exact"},{"name":"up regulation of ULK1-ATG13-RB1CC1 complex assembly","type":"exact"},{"name":"up regulation of ULK1-ATG13-RB1CC1 complex formation","type":"exact"},{"name":"up-regulation of ATG1 kinase complex assembly","type":"exact"},{"name":"up-regulation of ATG1 kinase complex formation","type":"exact"},{"name":"up-regulation of ATG1-ATG13 complex assembly","type":"exact"},{"name":"up-regulation of ATG1-ATG13 complex formation","type":"exact"},{"name":"up-regulation of ATG1/ULK1 kinase complex assembly","type":"exact"},{"name":"up-regulation of ATG1/ULK1 kinase complex formation","type":"exact"},{"name":"up-regulation of ATG1/ULK1 signaling complex assembly","type":"exact"},{"name":"up-regulation of ATG1/ULK1 signaling complex formation","type":"exact"},{"name":"up-regulation of Atg1p signalling complex assembly","type":"exact"},{"name":"up-regulation of Atg1p signalling complex formation","type":"exact"},{"name":"up-regulation of ULK1 signaling complex assembly","type":"exact"},{"name":"up-regulation of ULK1 signaling complex formation","type":"exact"},{"name":"up-regulation of ULK1-ATG13-FIP200 complex assembly","type":"exact"},{"name":"up-regulation of ULK1-ATG13-FIP200 complex formation","type":"exact"},{"name":"up-regulation of ULK1-ATG13-RB1CC1 complex assembly","type":"exact"},{"name":"up-regulation of ULK1-ATG13-RB1CC1 complex formation","type":"exact"},{"name":"upregulation of ATG1 kinase complex assembly","type":"exact"},{"name":"upregulation of ATG1 kinase complex formation","type":"exact"},{"name":"upregulation of ATG1-ATG13 complex assembly","type":"exact"},{"name":"upregulation of ATG1-ATG13 complex formation","type":"exact"},{"name":"upregulation of ATG1/ULK1 kinase complex assembly","type":"exact"},{"name":"upregulation of ATG1/ULK1 kinase complex formation","type":"exact"},{"name":"upregulation of ATG1/ULK1 signaling complex assembly","type":"exact"},{"name":"upregulation of ATG1/ULK1 signaling complex formation","type":"exact"},{"name":"upregulation of Atg1p signalling complex assembly","type":"exact"},{"name":"upregulation of Atg1p signalling complex formation","type":"exact"},{"name":"upregulation of ULK1 signaling complex assembly","type":"exact"},{"name":"upregulation of ULK1 signaling complex formation","type":"exact"},{"name":"upregulation of ULK1-ATG13-FIP200 complex assembly","type":"exact"},{"name":"upregulation of ULK1-ATG13-FIP200 complex formation","type":"exact"},{"name":"upregulation of ULK1-ATG13-RB1CC1 complex assembly","type":"exact"},{"name":"upregulation of ULK1-ATG13-RB1CC1 complex formation","type":"exact"}],"termid":"GO:1905866"}


id: PBO:0076772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tudor domain containing 12","termid":"PBO:0076772"}


id: PBO:0111750
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdc20/Fizzy subfamily","termid":"PBO:0111750"}


id: FYPO:0006172
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a short mitotic spindle assembles and elongates during prophase, but does not elongate further during anaphase B and eventually collapses.","definition_xrefs":["PomBase:mah","PMID:25375240"],"direct_ancestors":[{"relation_name":"has_part","term_name":"abolished mitotic spindle elongation during anaphase B","termid":"FYPO:0006174"},{"relation_name":"is_a","term_name":"abolished mitotic spindle elongation during anaphase B","termid":"FYPO:0006174"},{"relation_name":"is_a","term_name":"mitotic spindle collapse","termid":"FYPO:0006475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0001985","FYPO:0000054","FYPO:0000641","FYPO:0000631","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"mitotic spindle collapse without elongation during anaphase B","synonyms":[{"name":"broken mitotic spindle without elongation during anaphase B","type":"related"},{"name":"mitotic spindle breakage without elongation during anaphase B","type":"exact"},{"name":"mitotic spindle collapse without elongation during anaphase B during vegetative growth","type":"exact"},{"name":"mitotic spindle collapse without extension during anaphase B","type":"exact"},{"name":"spindle collapse without elongation during anaphase B during mitotic cell cycle","type":"related"},{"name":"spindle collapse without elongation during mitotic anaphase B","type":"exact"}],"termid":"FYPO:0006172"}


id: PBO:0053289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM domain containing 2","termid":"PBO:0053289"}


id: GO:0043332
data:
  {"annotated_genes":["SJAG_01888","SJAG_03444","SJAG_04723","SJAG_00677","SJAG_02222","SJAG_02351","SJAG_00514","SJAG_04703","SJAG_00667","SJAG_01943","SJAG_02924","SJAG_00185","SJAG_02486","SJAG_03596","SJAG_01215","SJAG_01993","SJAG_01732","SJAG_03453","SJAG_03145","SJAG_04901","SJAG_02228","SJAG_02700","SJAG_03357","SJAG_02718","SJAG_00700","SJAG_03646","SJAG_04887","SJAG_00938","SJAG_05001","SJAG_02169","SJAG_04100","SJAG_05285","SJAG_04781","SJAG_01017","SJAG_04001","SJAG_01794","SJAG_04509","SJAG_04982","SJAG_00870","SJAG_03011","SJAG_01171"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[83920,85125,85890,86701,86746,88531,88601,89508,91332,91413,92426,92929,93787,93986,94969,97281,99355,102214,102975,103007,103284,104974,105192,106331,108016,110478,111980,114808],"is_not":false,"summary":null,"term":"GO:0043332"},{"annotations":[89860,104198,91331,84313,85124,90058,91412,95628,107457,98030,98031,88530,112344,86868,115804,104259,110777,96225],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990819"},{"annotations":[106332,92427],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070867"}]},"cv_name":"cellular_component","definition":"The apex of the mating projection in unicellular fungi exposed to mating pheromone; site of polarized growth.","definition_xrefs":["GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"site of polarized growth","termid":"GO:0030427"},{"relation_name":"is_a","term_name":"cell tip","termid":"GO:0051286"},{"relation_name":"part_of","term_name":"mating projection","termid":"GO:0005937"}],"gene_count":41,"genes_by_uniquename":{"SJAG_00185":null,"SJAG_00514":null,"SJAG_00667":null,"SJAG_00677":null,"SJAG_00700":null,"SJAG_00870":null,"SJAG_00938":null,"SJAG_01017":null,"SJAG_01171":null,"SJAG_01215":null,"SJAG_01732":null,"SJAG_01794":null,"SJAG_01888":null,"SJAG_01943":null,"SJAG_01993":null,"SJAG_02169":null,"SJAG_02222":null,"SJAG_02228":null,"SJAG_02351":null,"SJAG_02486":null,"SJAG_02700":null,"SJAG_02718":null,"SJAG_02924":null,"SJAG_03011":null,"SJAG_03145":null,"SJAG_03357":null,"SJAG_03444":null,"SJAG_03453":null,"SJAG_03596":null,"SJAG_03646":null,"SJAG_04001":null,"SJAG_04100":null,"SJAG_04509":null,"SJAG_04703":null,"SJAG_04723":null,"SJAG_04781":null,"SJAG_04887":null,"SJAG_04901":null,"SJAG_04982":null,"SJAG_05001":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"mating projection tip","references_by_uniquename":{"GO_REF:0000107":null,"PMID:36148799":null},"synonyms":[{"name":"conjugation tube tip","type":"narrow"},{"name":"shmoo tip","type":"narrow"}],"termid":"GO:0043332","terms_by_termid":{"GO:0043332":null,"GO:0070867":null,"GO:1990819":null}}


id: GO:0004092
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + carnitine = (R)-O-acetylcarnitine + CoA.","definition_xrefs":["RHEA:21136","EC:2.3.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carnitine O-acyltransferase activity","termid":"GO:0016406"},{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"carnitine O-acetyltransferase activity","secondary_identifiers":["Reactome:R-HSA-390284","Reactome:R-HSA-390291","KEGG_REACTION:R02396","GO:0004093","MetaCyc:CARNITINE-O-ACETYLTRANSFERASE-RXN","GO:0004094"],"synonyms":[{"name":"CATC","type":"related"},{"name":"acetyl-CoA-carnitine O-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:carnitine O-acetyltransferase activity","type":"related"},{"name":"acetylcarnitine transferase activity","type":"related"},{"name":"carnitine O-acetyltransferase I activity","type":"narrow"},{"name":"carnitine O-acetyltransferase II activity","type":"narrow"},{"name":"carnitine acetyl coenzyme A transferase activity","type":"related"},{"name":"carnitine acetylase activity","type":"related"},{"name":"carnitine acetyltransferase activity","type":"related"},{"name":"carnitine-acetyl-CoA transferase activity","type":"related"}],"termid":"GO:0004092"}


id: PBO:0042838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 43","termid":"PBO:0042838"}


id: PBO:0113107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dual-specificity S/T and tyrosine protein kinase; spindle position checkpoint component that works in parallel with Kin4p to prevent mitotic exit network (MEN) activation by the Cdc14 early anaphase release (FEAR) network; roles in chromosome segregation, meiotic entry, genome stability, phosphorylation-dependent degradation of Rcn1p and Cdc6p, inhibition of protein kinase A, transcriptional regulation, inhibition of RNAPIII, calcium stress and inhibition of Clb2p-Cdc28p after nuclear division","termid":"PBO:0113107"}


id: FYPO:0006644
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle midzone is decreased, and some of the protein is present along the entire length of the spindle, during anaphase B of mitosis.","definition_xrefs":["PMID:28178520","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to mitotic spindle midzone during anaphase B","termid":"FYPO:0004833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to mitotic spindle midzone, with protein distributed along spindle, during anaphase B","synonyms":[{"name":"decreased protein localisation to mitotic spindle midzone, with protein distributed along spindle, during anaphase B","type":"exact"},{"name":"decreased protein localization to mitotic spindle midzone, with protein distributed along spindle, during anaphase B during vegetative growth","type":"exact"},{"name":"decreased protein localization to spindle midzone, with protein distributed along spindle, during anaphase B during mitotic cell cycle","type":"exact"},{"name":"decreased protein localization to spindle midzone, with protein distributed along spindle, during anaphase B of mitosis","type":"exact"},{"name":"reduced protein localization to mitotic spindle midzone, with protein distributed along spindle, during anaphase B","type":"exact"}],"termid":"FYPO:0006644"}


id: PBO:0063139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAS domain containing repressor 1","termid":"PBO:0063139"}


id: GO:0050266
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: caffeoyl-CoA + 3-(3,4-dihydroxyphenyl)lactate = CoA + rosmarinate.","definition_xrefs":["EC:2.3.1.140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"rosmarinate synthase activity","secondary_identifiers":["MetaCyc:RXN-7633","RHEA:22344"],"synonyms":[{"name":"4-coumaroyl-CoA:4-hydroxyphenyllactic acid 4-coumaroyl transferase activity","type":"related"},{"name":"caffeoyl-CoA:3-(3,4-dihydroxyphenyl)lactate 2'-O-caffeoyl-transferase activity","type":"related"},{"name":"caffeoyl-coenzyme A:3,4-dihydroxyphenyllactic acid caffeoyltransferase activity","type":"related"},{"name":"rosmarinic acid synthase activity","type":"related"}],"termid":"GO:0050266"}


id: GO:0008542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in an organism in which a change in behavior of an individual occurs in response to repeated exposure to a visual cue.","definition_xrefs":["GOC:jid","ISBN:0582227089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"visual behavior","termid":"GO:0007632"},{"relation_name":"is_a","term_name":"associative learning","termid":"GO:0008306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"visual learning","synonyms":[{"name":"spatial learning","type":"related"}],"termid":"GO:0008542"}


id: PBO:0082825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved peptide N-glycanase; deglycosylating enzyme that cleaves N-glycans that are attached to misfolded ERAD substrate glycoproteins prior to proteasome-dependent degradation; localizes to the cytoplasm and nucleus; activity is enhanced by interaction with Rad23p; human ortholog NGLY1 is associated with a syndrome characterized by developmental delays, epilepsy, absence of tears and liver disease","termid":"PBO:0082825"}


id: GO:0032378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of lipids within cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lipid transport","termid":"GO:0032369"},{"relation_name":"is_a","term_name":"regulation of intracellular lipid transport","termid":"GO:0032377"},{"relation_name":"is_a","term_name":"negative regulation of intracellular transport","termid":"GO:0032387"},{"relation_name":"negatively_regulates","term_name":"intracellular lipid transport","termid":"GO:0032365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of intracellular lipid transport","synonyms":[{"name":"down regulation of intracellular lipid transport","type":"exact"},{"name":"down-regulation of intracellular lipid transport","type":"exact"},{"name":"downregulation of intracellular lipid transport","type":"exact"},{"name":"inhibition of intracellular lipid transport","type":"narrow"}],"termid":"GO:0032378"}


id: PBO:0005831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prephenate dehydrogenase [NADP+] Tyr1 (predicted)","termid":"PBO:0005831"}


id: PBO:0030935
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_nuclear_RNA_level_during_vegetative_growth","termid":"PBO:0030935"}


id: GO:0005008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with hepatocyte growth factor receptor ligand and transmitting the signal across the plasma membrane to initiate a change in cell activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane receptor protein tyrosine kinase activity","termid":"GO:0004714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016301","GO:0140096","GO:0038023","GO:0004672","GO:0003824"],"is_obsolete":false,"name":"hepatocyte growth factor receptor activity","secondary_identifiers":["EC:2.7.10.1"],"synonyms":[{"name":"HGF receptor activity","type":"exact"},{"name":"HGF-activated receptor activity","type":"exact"},{"name":"hepatocyte growth factor-activated receptor activity","type":"exact"}],"termid":"GO:0005008"}


id: GO:0052072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of host salicylic acid-mediated signal transduction pathways during the host defense response. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by symbiont of defense-related host salicylic acid-mediated signal transduction pathway (obsolete GO:0052072)","synonyms":[{"name":"activation by organism of defense-related host SA-mediated signal transduction pathway","type":"narrow"},{"name":"activation by organism of defense-related host salicylic acid-mediated signal transduction pathway","type":"narrow"},{"name":"activation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway","type":"narrow"},{"name":"induction by organism of defense-related host SA-mediated signal transduction pathway","type":"narrow"},{"name":"induction by organism of defense-related host salicylic acid-mediated signal transduction pathway","type":"narrow"},{"name":"positive regulation by organism of defense-related host SA-mediated signal transduction pathway","type":"narrow"},{"name":"positive regulation by organism of defense-related salicylic acid-mediated signal transduction pathway in other organism involved in symbiotic interaction","type":"broad"},{"name":"positive regulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway","type":"exact"},{"name":"stimulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway","type":"narrow"},{"name":"up regulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway","type":"exact"},{"name":"up-regulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway","type":"exact"},{"name":"upregulation by organism of defense-related host SA-mediated signal transduction pathway","type":"narrow"},{"name":"upregulation by organism of defense-related host salicylic acid-mediated signal transduction pathway","type":"narrow"},{"name":"upregulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway","type":"exact"}],"termid":"GO:0052072"}


id: GO:0009800
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cinnamic acid, 3-phenyl-2-propenoic acid.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylpropanoid biosynthetic process","termid":"GO:0009699"},{"relation_name":"is_a","term_name":"cinnamic acid metabolic process","termid":"GO:0009803"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"cinnamic acid biosynthetic process","synonyms":[{"name":"cinnamic acid anabolism","type":"exact"},{"name":"cinnamic acid biosynthesis","type":"exact"},{"name":"cinnamic acid formation","type":"exact"},{"name":"cinnamic acid synthesis","type":"exact"},{"name":"cinnamylic acid biosynthesis","type":"exact"},{"name":"cinnamylic acid biosynthetic process","type":"exact"},{"name":"phenylacrylic acid biosynthesis","type":"exact"},{"name":"phenylacrylic acid biosynthetic process","type":"exact"},{"name":"phenylpropenoic acid biosynthesis","type":"exact"},{"name":"phenylpropenoic acid biosynthetic process","type":"exact"}],"termid":"GO:0009800"}


id: GO:0004385
data:
  {"annotated_genes":["SJAG_04849"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98335],"is_not":false,"summary":null,"term":"GO:0004385"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + GMP = ADP + GDP.","definition_xrefs":["EC:2.7.4.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate kinase activity","termid":"GO:0050145"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04849":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"guanylate kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GUANYL-KIN-RXN","Reactome:R-HSA-110133","Reactome:R-HSA-9748949","RHEA:20780","Reactome:R-HSA-73788","Reactome:R-HSA-9748963"],"synonyms":[{"name":"5'-GMP kinase activity","type":"related"},{"name":"ATP:(d)GMP phosphotransferase activity","type":"related"},{"name":"ATP:GMP phosphotransferase activity","type":"related"},{"name":"GMP kinase activity","type":"related"},{"name":"deoxyguanylate kinase activity","type":"related"},{"name":"guanosine monophosphate kinase activity","type":"related"},{"name":"membrane-associated guanylate kinase","type":"narrow"}],"termid":"GO:0004385","terms_by_termid":{"GO:0004385":null}}


id: PBO:0081191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zic family member 4","termid":"PBO:0081191"}


id: GO:0001765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a membrane raft, a small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalizes cellular processes.","definition_xrefs":["PMID:12803918","PMID:16645198","PMID:12648772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane raft organization","termid":"GO:0031579"},{"relation_name":"is_a","term_name":"membrane assembly","termid":"GO:0071709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0061024","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"membrane raft assembly","synonyms":[{"name":"lipid raft assembly","type":"exact"},{"name":"lipid raft formation","type":"related"},{"name":"membrane raft formation","type":"related"}],"termid":"GO:0001765"}


id: GO:0001722
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Low molecular weight (10-45 kDa) proteins that associate with intermediate filaments by lateral binding of the filaments and have the effect of creating tight macrofilament aggregates.","definition_xrefs":["GOC:ajp","PMID:9484600"],"gene_count":0,"genotype_count":0,"name":"obsolete type I intermediate filament associated protein (obsolete GO:0001722)","synonyms":[{"name":"type I intermediate filament associated protein","type":"exact"}],"termid":"GO:0001722"}


id: GO:0001321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of general metabolic decline that arises in dividing cells as they age, and alters cellular metabolism to cause a decline in cell function.","definition_xrefs":["GOC:mah","GOC:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete age-dependent general metabolic decline involved in replicative cell aging (obsolete GO:0001321)","synonyms":[{"name":"age-dependent general metabolic decline during replicative cell ageing","type":"related"},{"name":"age-dependent general metabolic decline involved in replicative cell aging","type":"related"}],"termid":"GO:0001321"}


id: PATO:0002014
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structure, cavities","termid":"PATO:0002014"}


id: MOD:01535
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with the Applied Biosystems iTRAQ8plex-114 reporter+balance group.","definition_xrefs":["Unimod:730"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(13)C isotope tagged reagent","termid":"MOD:01428"},{"relation_name":"is_a","term_name":"(15)N isotope tagged reagent","termid":"MOD:01429"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent acylated residue","termid":"MOD:01526"},{"relation_name":"is_a","term_name":"modifications with monoisotopic mass differences that are nominally equal at 304.205359 Da","termid":"MOD:01591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-114 reporter+balance reagent acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 113, 114, 116 & 117","type":"related"},{"name":"iTRAQ8plex","type":"related"},{"name":"iTRAQ8plex:13C(7)15N(1)","type":"related"}],"termid":"MOD:01535"}


id: PBO:0045223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C11","termid":"PBO:0045223"}


id: MOD:01678
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively coverts L-lysine to N6-carbamoyl-L-lysine.","definition_xrefs":["Unimod:5#K","DeltaMass:56","OMSSA:31","PubMed:10978403","PubMed:12203680"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbamoylated residue","termid":"MOD:00398"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6-carbamoyl-L-lysine","synonyms":[{"name":"2-amino-6-ureido-hexanoic acid","type":"exact"},{"name":"Carbamyl","type":"related"},{"name":"Carbamylation","type":"related"},{"name":"N6-(aminocarbonyl)-L-lysine","type":"exact"},{"name":"N6CbmLys","type":"exact"},{"name":"carbamylk","type":"exact"},{"name":"homocitrulline","type":"exact"}],"termid":"MOD:01678"}


id: PBO:0044716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/H-box helicase 11 like 3 (pseudogene)","termid":"PBO:0044716"}


id: PR:O14109
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- maf1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"repressor of RNA polymerase III transcription maf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31G5.12c","synonyms":[{"name":"Spom972h-maf1","type":"exact"}],"termid":"PR:O14109"}


id: PBO:0078594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 7, Y-linked","termid":"PBO:0078594"}


id: PBO:0070103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 17 pseudogene","termid":"PBO:0070103"}


id: PBO:0087300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sirtuin, histone H3 deacetylase; involved along with Hst4p in telomeric silencing, cell cycle progression, radiation resistance, genomic stability and short-chain fatty acid metabolism; member of the Sir2 family of NAD(+)-dependent protein deacetylases","termid":"PBO:0087300"}


id: GO:0008446
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H2O.","definition_xrefs":["EC:4.2.1.47","RHEA:23820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"GDP-mannose 4,6-dehydratase activity","secondary_identifiers":["Reactome:R-HSA-6787632","MetaCyc:GDPMANDEHYDRA-RXN","KEGG_REACTION:R00888"],"synonyms":[{"name":"GDP-D-mannose 4,6-dehydratase activity","type":"related"},{"name":"GDP-D-mannose dehydratase activity","type":"related"},{"name":"GDP-mannose 4,6-hydro-lyase (GDP-4-dehydro-6-deoxy-D-mannose-forming)","type":"related"},{"name":"GDP-mannose 4,6-hydro-lyase activity","type":"related"},{"name":"GDPmannose 4,6-dehydratase activity","type":"related"},{"name":"Gmd","type":"related"},{"name":"guanosine 5'-diphosphate-D-mannose oxidoreductase activity","type":"related"},{"name":"guanosine diphosphomannose 4,6-dehydratase activity","type":"related"},{"name":"guanosine diphosphomannose oxidoreductase activity","type":"related"}],"termid":"GO:0008446"}


id: PBO:0057497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 615","termid":"PBO:0057497"}


id: PBO:0072661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reticulon 3","termid":"PBO:0072661"}


id: PBO:0002959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial sulfhydryl oxidase (predicted)","termid":"PBO:0002959"}


id: PBO:0042521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDK2AP1 pseudogene 1","termid":"PBO:0042521"}


id: GO:0003227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the right ventricular myocardium are generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"right ventricular cardiac muscle tissue morphogenesis","termid":"GO:0003221"},{"relation_name":"is_a","term_name":"ventricular trabecula myocardium morphogenesis","termid":"GO:0003222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"right ventricular trabecular myocardium morphogenesis","termid":"GO:0003227"}


id: PBO:0043676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CORO1C pseudogene 1","termid":"PBO:0043676"}


id: PBO:0030710
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_chromatin_binding","termid":"PBO:0030710"}


id: PBO:0058716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6844","termid":"PBO:0058716"}


id: PBO:0042245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine receptor 7","termid":"PBO:0042245"}


id: PBO:0072709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RWD domain containing 3","termid":"PBO:0072709"}


id: PBO:0109517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS p21 protein activator 4E, pseudogene","termid":"PBO:0109517"}


id: GO:1902009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of toxin transport.","definition_xrefs":["GOC:dph","PMID:22792315","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of toxin transport (obsolete GO:1902009)","synonyms":[{"name":"activation of toxin transport","type":"narrow"},{"name":"up regulation of toxin transport","type":"exact"},{"name":"up-regulation of toxin transport","type":"exact"},{"name":"upregulation of toxin transport","type":"exact"}],"termid":"GO:1902009"}


id: FYECO:0000153
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which diethyl maleate was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ diethyl maleate","synonyms":[{"name":"diethyl maleate added","type":"exact"}],"termid":"FYECO:0000153"}


id: GO:2000579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of ATP-dependent microtubule motor activity, minus-end-directed.","definition_xrefs":["GOC:vw","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of microtubule motor activity, minus-end-directed (obsolete GO:2000579)","synonyms":[{"name":"positive regulation of ATP-dependent microtubule motor activity, minus-end-directed","type":"exact"},{"name":"positive regulation of kinesin ATP phosphohydrolase (minus-end-directed)","type":"exact"},{"name":"positive regulation of minus-end-directed kinesin ATPase activity","type":"exact"},{"name":"positive regulation of minus-end-directed microtubule motor activity","type":"broad"}],"termid":"GO:2000579"}


id: _global:output_of
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"inverse of has output","direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_related_to","termid":"_global:functionally_related_to"},{"relation_name":"is_a","term_name":"participates_in","termid":"_global:participates_in"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"output_of","secondary_identifiers":["RO:0002353"],"synonyms":[{"name":"formation results from","type":"exact"}],"termid":"_global:output_of"}


id: PBO:0088241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S41","termid":"PBO:0088241"}


id: PBO:0070739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10a pseudogene 9","termid":"PBO:0070739"}


id: PBO:0076490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TARDBP pseudogene 5","termid":"PBO:0076490"}


id: FYPO:0001197
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of calcium ion measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"},{"relation_name":"is_a","term_name":"altered cellular calcium level","termid":"FYPO:0001462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular calcium level","synonyms":[{"name":"decreased calcium accumulation","type":"related"},{"name":"decreased cellular calcium ion level","type":"exact"},{"name":"decreased cellular calcium level during mitotic cell cycle","type":"related"},{"name":"decreased cellular calcium level during vegetative growth","type":"exact"},{"name":"reduced cellular calcium level","type":"exact"}],"termid":"FYPO:0001197"}


id: PBO:0048002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM domain containing 4A","termid":"PBO:0048002"}


id: PBO:0079577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 A","termid":"PBO:0079577"}


id: GO:0090107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of high-density lipoprotein particle assembly. High-density lipoprotein particle assembly is the aggregation and arrangement of proteins and lipids to form a high-density lipoprotein particle.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"high-density lipoprotein particle assembly","termid":"GO:0034380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"regulation of high-density lipoprotein particle assembly","termid":"GO:0090107"}


id: PBO:0111838
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tudor domain","termid":"PBO:0111838"}


id: PBO:0051156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-36 (pseudogene)","termid":"PBO:0051156"}


id: PBO:0067029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 42, pseudogene","termid":"PBO:0067029"}


id: PR:Q9P781
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1711.09c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P781"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi apparatus membrane protein tvp38 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1711.09c","synonyms":[{"name":"Spom972h-SPBC1711.09c","type":"exact"}],"termid":"PR:Q9P781"}


id: PBO:0084059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein (GAP) for Rho3p, involved in cell polarity green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and cytoplasm; relocalizes from bud neck to cytoplasm upon DNA replication stress","termid":"PBO:0084059"}


id: FYPO:0003955
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular metabolism phenotype observed in the vegetative growth phase of the life cycle in which triglyceride biosynthesis is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular metabolism phenotype during vegetative growth","termid":"FYPO:0001348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased triglyceride biosynthetic process","synonyms":[{"name":"increased TAG biosynthetic process","type":"exact"},{"name":"increased triacylglycerol biosynthesis","type":"exact"},{"name":"increased triacylglycerol biosynthetic process","type":"exact"},{"name":"increased triglyceride biosynthesis","type":"exact"},{"name":"increased triglyceride biosynthetic process during mitotic cell cycle","type":"related"},{"name":"increased triglyceride biosynthetic process during vegetative growth","type":"exact"}],"termid":"FYPO:0003955"}


id: PR:Q9P7L3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC21C3.10c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7L3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21C3.10c","synonyms":[{"name":"2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one reductase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DARIPP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DAROPP reductase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DARP reductase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPBC21C3.10c","type":"exact"}],"termid":"PR:Q9P7L3"}


id: PBO:0077833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP73 antisense RNA 1","termid":"PBO:0077833"}


id: PR:Q9C0Y5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdr1 gene.","definition_xrefs":["UniProtKB:Q9C0Y5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-binding cassette transporter pdr1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB24D3.09c","synonyms":[{"name":"ABC transporter pdr1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pdr1","type":"exact"}],"termid":"PR:Q9C0Y5"}


id: GO:0019661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic enzymatic chemical reactions and pathways resulting in the breakdown of glucose to lactate, via canonical glycolysis, yielding energy in the form of adenosine triphosphate (ATP).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucose catabolic process to lactate","termid":"GO:0019659"},{"relation_name":"is_a","term_name":"glycolytic fermentation","termid":"GO:0019660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006091","GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"glucose catabolic process to lactate via pyruvate","secondary_identifiers":["MetaCyc:ANAEROFRUCAT-PWY"],"synonyms":[{"name":"glucose fermentation to lactate via pyruvate","type":"exact"},{"name":"homofermentation","type":"exact"},{"name":"homofermentative lactate fermentation","type":"exact"},{"name":"homofermentative pathway","type":"exact"},{"name":"homolactate fermentation","type":"exact"},{"name":"homolactic fermentation","type":"exact"}],"termid":"GO:0019661"}


id: MOD:00422
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a morpholine-2-acetyl group.","definition_xrefs":["Unimod:29#N-term","PubMed:10446193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-amino acylated residue","termid":"MOD:01696"},{"relation_name":"is_a","term_name":"morpholine-2-acetylated residue","termid":"MOD:01813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"alpha-amino morpholine-2-acetylated residue","synonyms":[{"name":"N-Succinimidyl-2-morpholine acetate","type":"related"},{"name":"N-succinimidylmorpholine-2-acetate alpha-amino derivative","type":"exact"},{"name":"SMA","type":"related"}],"termid":"MOD:00422"}


id: PBO:0044878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENND5B antisense RNA 1","termid":"PBO:0044878"}


id: PBO:0075703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serum response factor","termid":"PBO:0075703"}


id: PBO:0056684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maternally expressed 8, small nucleolar RNA host gene","termid":"PBO:0056684"}


id: PBO:0040583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRISC and BRCA1 A complex member 2","termid":"PBO:0040583"}


id: PBO:0054145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1512","termid":"PBO:0054145"}


id: PATO:0002491
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anterodorsal orientation","synonyms":[{"name":"anterodorsally directed","type":"exact"}],"termid":"PATO:0002491"}


id: GO:0043272
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, ethene), occurring as part of the process of jasmonic acid and ethylene-dependent systemic resistance.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ethylene biosynthetic process","termid":"GO:0009693"},{"relation_name":"part_of","term_name":"jasmonic acid and ethylene-dependent systemic resistance","termid":"GO:0009861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ethylene biosynthesis involved in jasmonic acid and ethylene-dependent systemic resistance","synonyms":[{"name":"ethylene anabolism during jasmonic acid and ethylene-dependent systemic resistance","type":"related"},{"name":"ethylene biosynthetic process during jasmonic acid and ethylene-dependent systemic resistance","type":"related"},{"name":"ethylene formation during jasmonic acid and ethylene-dependent systemic resistance","type":"related"},{"name":"ethylene synthesis during jasmonic acid and ethylene-dependent systemic resistance","type":"related"}],"termid":"GO:0043272"}


id: PBO:0053309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lin-37 DREAM MuvB core complex component","termid":"PBO:0053309"}


id: PBO:0046082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A1 pseudogene 7","termid":"PBO:0046082"}


id: GO:0061578
data:
  {"annotated_genes":["SJAG_01281","SJAG_01528"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87662,92603],"is_not":false,"summary":null,"term":"GO:0061578"}]},"cv_name":"molecular_function","definition":"Hydrolysis of a ubiquitin unit from a ubiquitinated protein linked via the Lys63 residue of ubiquitin.","definition_xrefs":["PMID:18313383","GOC:dph","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deubiquitinase activity","termid":"GO:0101005"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01281":null,"SJAG_01528":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008233"}],"interesting_parent_ids":["GO:0008233","GO:0003674","GO:0016787","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"K63-linked deubiquitinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5691411","Reactome:R-HSA-9685219","Reactome:R-HSA-9711016","Reactome:R-HSA-936390","Reactome:R-HSA-688136","Reactome:R-HSA-5691439","Reactome:R-HSA-8869506","Reactome:R-HSA-936381","Reactome:R-HSA-5691431","Reactome:R-HSA-5696547","Reactome:R-HSA-9750942","Reactome:R-HSA-9817400","Reactome:R-HSA-5357845","Reactome:R-HSA-5690856","Reactome:R-HSA-741411"],"synonyms":[{"name":"K63-specific deubiquitinase activity","type":"exact"},{"name":"Lys63-specific deubiquitinase activity","type":"exact"}],"termid":"GO:0061578","terms_by_termid":{"GO:0061578":null}}


id: PBO:0038317
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"authors","termid":"PBO:0038317"}


id: GO:1990466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The sumoylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.","definition_xrefs":["PMID:21518767","PMID:23443663"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein sumoylation","termid":"GO:0016925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"protein autosumoylation","synonyms":[{"name":"protein auto-sumoylation","type":"exact"},{"name":"protein self-sumoylation","type":"exact"}],"termid":"GO:1990466"}


id: PBO:0083931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B; homologous to mammalian ribosomal protein S27A, no bacterial homolog","termid":"PBO:0083931"}


id: GO:0000207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Movement of a MAP kinase to the nucleus in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930).","definition_xrefs":["PMID:9561267"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear translocation of MAPK during sporulation (sensu Saccharomyces) (obsolete GO:0000207)","synonyms":[{"name":"nuclear translocation of MAPK during sporulation (sensu Saccharomyces)","type":"exact"}],"termid":"GO:0000207"}


id: PBO:0087246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine-rich protein that contains a bHLH DNA binding motif; binds E-boxes of glycolytic genes and contributes to their activation; may function as a transcriptional activator in Ty1-mediated gene expression; bHLH stands for basic-helix-loop-helix","termid":"PBO:0087246"}


id: SO:0002084
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splice_region_variant","termid":"SO:0001630"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exonic_splice_region_variant","synonyms":[{"name":"ANNOVAR:exonic;splicing","type":"exact"},{"name":"Seattleseq:coding-near-splice","type":"related"},{"name":"exonic splice region variant","type":"exact"}],"termid":"SO:0002084"}


id: GO:0098033
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A fiber attached to the neck at the base of some icosahedral viral capsids.","definition_xrefs":["GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral capsid, fiber","termid":"GO:0098022"},{"relation_name":"part_of","term_name":"icosahedral viral capsid, neck","termid":"GO:0098030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"icosahedral viral capsid, neck fiber","termid":"GO:0098033"}


id: FYECO:0000336
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which cerulenin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ cerulenin","termid":"FYECO:0000336"}


id: PBO:0042129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical carcinoma expressed PCNA regulatory lncRNA","termid":"PBO:0042129"}


id: GO:0042417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catecholamine metabolic process","termid":"GO:0006584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dopamine metabolic process","synonyms":[{"name":"dopamine metabolism","type":"exact"}],"termid":"GO:0042417"}


id: GO:0035743
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that contributes to cytokine production by a CD4-positive, alpha-beta T cell.","definition_xrefs":["CL:0000624","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell cytokine production","termid":"GO:0002369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"CD4-positive, alpha-beta T cell cytokine production","termid":"GO:0035743"}


id: PR:O13877
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerases I, II, and III subunit RPABC5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02059","PANTHER:PTHR23413:SF2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerases I, II, and III subunit RPABC5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B3.12c","secondary_identifiers":["UniProtKB:O13877"],"synonyms":[{"name":"ABC10-beta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerases I, II, and III subunit ABC5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RPC8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-POLR2L","type":"exact"}],"termid":"PR:O13877"}


id: PBO:0082196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression","termid":"PBO:0082196"}


id: GO:0016351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete drug susceptibility/resistance (obsolete GO:0016351)","synonyms":[{"name":"drug susceptibility/resistance","type":"exact"}],"termid":"GO:0016351"}


id: GO:0061588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a population of phospholipid molecules from one leaflet of the plasma membrane bilayer to the opposite leaflet as a result of a calcium stimulus.","definition_xrefs":["GOC:krc","PMID:23532839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane phospholipid scrambling","termid":"GO:0017121"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0061024","GO:0006810"],"is_obsolete":false,"name":"calcium activated phospholipid scrambling","termid":"GO:0061588"}


id: GO:0015091
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of ferric iron (Fe(III) or Fe3+) ions from one side of a membrane to the other.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron ion transmembrane transporter activity","termid":"GO:0005381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"ferric iron transmembrane transporter activity","termid":"GO:0015091"}


id: PBO:0002725
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wiskott-Aldrich syndrome","termid":"PBO:0002725"}


id: PBO:0056701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meis homeobox 2","termid":"PBO:0056701"}


id: PBO:0049697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyaluronan and proteoglycan link protein 3","termid":"PBO:0049697"}


id: GO:0033023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of regulating the proliferation and elimination of mast cells such that the total number of mast cells within a whole or part of an organism is stable over time in the absence of an outside stimulus.","definition_xrefs":["GOC:add","PMID:11292031"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte homeostasis","termid":"GO:0001776"},{"relation_name":"is_a","term_name":"myeloid cell homeostasis","termid":"GO:0002262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mast cell homeostasis","termid":"GO:0033023"}


id: FYECO:0000150
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Calcium ions were completely excluded from the experimental medium/buffer.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping absent","termid":"FYECO:0000120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium absent","termid":"FYECO:0000150"}


id: GO:0021698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the cerebellar cortex. This process pertains to the physical shaping of a rudimentary structure. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function.","definition_xrefs":["GO_REF:0000021","GOC:dph","GOC:cls","GOC:jid","ISBN:0838580343","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"},{"relation_name":"part_of","term_name":"cerebellar cortex morphogenesis","termid":"GO:0021696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar cortex structural organization","synonyms":[{"name":"cerebellar cortex structural organisation","type":"exact"}],"termid":"GO:0021698"}


id: PBO:0029319
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H2A_phosphorylation_at_centromere_outer_repeat","termid":"PBO:0029319"}


id: GO:0004636
data:
  {"annotated_genes":["SJAG_02400"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103994],"is_not":false,"summary":null,"term":"GO:0004636"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + H2O = 1-(5-phosphonatoribosyl)-5'-AMP + diphosphate + H+.","definition_xrefs":["RHEA:22828","EC:3.6.1.31"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02400":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"phosphoribosyl-ATP diphosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:HISTPRATPHYD-RXN","KEGG_REACTION:R04035"],"synonyms":[{"name":"1-(5-phosphoribosyl)-ATP diphosphohydrolase activity","type":"related"},{"name":"phosphoribosyl-ATP pyrophosphatase activity","type":"exact"},{"name":"phosphoribosyladenosine triphosphate pyrophosphatase activity","type":"related"}],"termid":"GO:0004636","terms_by_termid":{"GO:0004636":null}}


id: PBO:0065623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPN2 pseudogene 1","termid":"PBO:0065623"}


id: GO:0048533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized floral cell acquires the specialized features of a sporocyte. Sporocytes are the haploid spores of angiosperms. Once formed, they undergo meiotic divisions to form microspores and megaspores.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sporocyte differentiation","synonyms":[{"name":"sporocyte development","type":"narrow"},{"name":"sporocyte morphogenesis","type":"related"}],"termid":"GO:0048533"}


id: PBO:0027131
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_early_meiotic_gene_mRNA_during_late_meiosis","termid":"PBO:0027131"}


id: PBO:0035817
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H3-K9_trimethylation_at_silent_mating-type_cassette_during_vegetative_growth","termid":"PBO:0035817"}


id: PBO:0081713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 638","termid":"PBO:0081713"}


id: FYPO:0000068
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of K-252a than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002682","FYPO:0000139","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"resistance to K-252a","synonyms":[{"name":"resistance to K-252a during mitotic cell cycle","type":"related"},{"name":"resistance to K-252a during vegetative growth","type":"exact"},{"name":"resistant to K-252a","type":"exact"}],"termid":"FYPO:0000068"}


id: GO:0031766
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 3 galanin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galanin receptor binding","termid":"GO:0031763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"type 3 galanin receptor binding","synonyms":[{"name":"type 3 galanin receptor ligand","type":"narrow"}],"termid":"GO:0031766"}


id: PBO:0074986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-28","termid":"PBO:0074986"}


id: GO:0047560
data:
  {"annotated_genes":["SJAG_02488"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110948],"is_not":false,"summary":null,"term":"GO:0047560"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + sphinganine = 3-dehydrosphinganine + H+ + NADPH.","definition_xrefs":["EC:1.1.1.102","RHEA:22640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02488":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"3-dehydrosphinganine reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-428123","MetaCyc:3-DEHYDROSPHINGANINE-REDUCTASE-RXN","KEGG_REACTION:R02978"],"synonyms":[{"name":"3-ketosphinganine reductase activity","type":"related"},{"name":"3-oxosphinganine reductase activity","type":"related"},{"name":"3-oxosphinganine:NADPH oxidoreductase activity","type":"related"},{"name":"D-3-dehydrosphinganine reductase activity","type":"related"},{"name":"D-3-oxosphinganine reductase activity","type":"related"},{"name":"D-3-oxosphinganine:B-NADPH oxidoreductase activity","type":"related"},{"name":"D-erythro-dihydrosphingosine:NADP+ 3-oxidoreductase activity","type":"related"},{"name":"DSR activity","type":"related"},{"name":"KTS reductase activity","type":"related"}],"termid":"GO:0047560","terms_by_termid":{"GO:0047560":null}}


id: MOD:01906
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-methionine residue to dehydromethionine.","definition_xrefs":["PubMed:18688235","PubMed:19775156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclized residue","termid":"MOD:00601"},{"relation_name":"is_a","term_name":"modified L-methionine residue","termid":"MOD:00913"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydromethionine","synonyms":[{"name":"(3S)-3-carboxy-1-methylisothiazolidin-1-ium","type":"exact"},{"name":"L-dehydromethionine","type":"exact"}],"termid":"MOD:01906"}


id: PBO:0061323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family member B1, pseudogene","termid":"PBO:0061323"}


id: PBO:0030850
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_centromere","termid":"PBO:0030850"}


id: FYPO:0004649
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle pole body during metaphase does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to mitotic spindle pole body during mitosis","termid":"FYPO:0006825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to mitotic spindle pole body during metaphase","synonyms":[{"name":"abolished protein localization to spindle pole body during metaphase during mitotic cell cycle","type":"exact"},{"name":"protein absent from mitotic spindle pole body during metaphase","type":"related"},{"name":"protein localisation to mitotic spindle pole body abolished during metaphase","type":"exact"},{"name":"protein localization to mitotic SPB abolished during metaphase","type":"exact"},{"name":"protein localization to mitotic spindle pole body abolished during metaphase","type":"exact"},{"name":"protein localization to spindle pole body abolished during metaphase during vegetative growth","type":"exact"}],"termid":"FYPO:0004649"}


id: PBO:0077775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOMM40 pseudogene 2","termid":"PBO:0077775"}


id: PBO:0053495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 473","termid":"PBO:0053495"}


id: PBO:0061396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"natriuretic peptide A","termid":"PBO:0061396"}


id: PBO:0073000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium voltage-gated channel alpha subunit 2","termid":"PBO:0073000"}


id: PBO:0108942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 21","termid":"PBO:0108942"}


id: GO:0001760
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-amino-3-carboxymuconate 6-semialdehyde + H+ = 2-aminomuconate 6-semialdehyde + CO2.","definition_xrefs":["EC:4.1.1.45","RHEA:16557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"aminocarboxymuconate-semialdehyde decarboxylase activity","secondary_identifiers":["KEGG_REACTION:R04323","MetaCyc:AMINO-CARBOXYMUCONATE-SEMIALDEHYDE-RXN"],"synonyms":[{"name":"2-amino-3-(3-oxoprop-1-en-1-yl)but-2-enedioate carboxy-lyase (2-aminomuconate-semialdehyde-forming)","type":"related"},{"name":"2-amino-3-(3-oxoprop-1-en-1-yl)but-2-enedioate carboxy-lyase activity","type":"related"},{"name":"2-amino-3-(3-oxoprop-2-enyl)but-2-enedioate carboxy-lyase activity","type":"related"},{"name":"ACMSD activity","type":"exact"},{"name":"alpha-amino-beta-carboxymuconate-epsilon-semialdehade decarboxylase activity","type":"related"},{"name":"alpha-amino-beta-carboxymuconate-epsilon-semialdehyde beta-decarboxylase activity","type":"related"},{"name":"picolinic acid carboxylase activity","type":"related"},{"name":"picolinic acid decarboxylase activity","type":"related"}],"termid":"GO:0001760"}


id: PBO:0036247
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human COQ4","termid":"PBO:0036247"}


id: GO:0140588
data:
  {"annotated_genes":["SJAG_00682","SJAG_01831","SJAG_05019","SJAG_03418","SJAG_00796","SJAG_03926","SJAG_02606","SJAG_01067"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83848,85705,86949,92296,103870,103950,106689,113042],"is_not":false,"summary":null,"term":"GO:0140588"}]},"cv_name":"biological_process","definition":"A chromatin organization process that starts with the loading of an extrusion motor (by an SMC family complex) onto the chromatin, followed by chromatin extrusion that stops at loop anchoring sites on the chromosome.","definition_xrefs":["PMID:32213323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin organization","termid":"GO:0006325"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00682":null,"SJAG_00796":null,"SJAG_01067":null,"SJAG_01831":null,"SJAG_02606":null,"SJAG_03418":null,"SJAG_03926":null,"SJAG_05019":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006325","GO:0008150"],"is_obsolete":false,"name":"chromatin looping","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DNA loop extrusion","type":"exact"},{"name":"DNA looping","type":"broad"},{"name":"chromatin folding","type":"related"},{"name":"chromatin loop assembly","type":"exact"}],"termid":"GO:0140588","terms_by_termid":{"GO:0140588":null}}


id: GO:1905697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. OBSOLETE. OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of polysome binding.","definition_xrefs":["GOC:PARL","GOC:TermGenie","GO_REF:0000059","GOC:bc","PMID:18426977"],"gene_count":0,"genotype_count":0,"name":"obsolete obsolete obsolete negative regulation of polysome binding (obsolete GO:1905697)","synonyms":[{"name":"down regulation of polyribosome binding","type":"exact"},{"name":"down regulation of polysome binding","type":"exact"},{"name":"down-regulation of polyribosome binding","type":"exact"},{"name":"down-regulation of polysome binding","type":"exact"},{"name":"downregulation of polyribosome binding","type":"exact"},{"name":"downregulation of polysome binding","type":"exact"},{"name":"inhibition of polyribosome binding","type":"narrow"},{"name":"inhibition of polysome binding","type":"narrow"},{"name":"negative regulation of polyribosome binding","type":"exact"}],"termid":"GO:1905697"}


id: GO:1905833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of microtubule nucleation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:27689799"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of microtubule nucleation","termid":"GO:0010968"},{"relation_name":"is_a","term_name":"negative regulation of microtubule polymerization","termid":"GO:0031115"},{"relation_name":"negatively_regulates","term_name":"microtubule nucleation","termid":"GO:0007020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"negatively_regulates","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0000226"},{"rel_name":"negatively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003","GO:0007010","GO:0000226"],"is_obsolete":false,"name":"negative regulation of microtubule nucleation","synonyms":[{"name":"down regulation of microtubule nucleation","type":"exact"},{"name":"down-regulation of microtubule nucleation","type":"exact"},{"name":"downregulation of microtubule nucleation","type":"exact"},{"name":"inhibition of microtubule nucleation","type":"narrow"}],"termid":"GO:1905833"}


id: GO:0019279
data:
  {"annotated_genes":["SJAG_02290","SJAG_03671","SJAG_03102"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110096],"is_not":false,"summary":null,"term":"GO:0019279"},{"annotations":[96755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019280"},{"annotations":[99709],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019281"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including L-homoserine, via the intermediate cystathionine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"homoserine metabolic process","termid":"GO:0009092"},{"relation_name":"is_a","term_name":"'de novo' L-methionine biosynthetic process","termid":"GO:0071266"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02290":null,"SJAG_03102":null,"SJAG_03671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281","GO:0006790"],"is_obsolete":false,"name":"L-methionine biosynthetic process from L-homoserine via cystathionine","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:HOMOSER-METSYN-PWY"],"synonyms":[{"name":"L-methionine anabolism from L-homoserine via cystathionine","type":"exact"},{"name":"L-methionine formation from L-homoserine via cystathionine","type":"exact"},{"name":"L-methionine synthesis from L-homoserine via cystathionine","type":"exact"},{"name":"methionine biosynthetic process from L-homoserine via cystathionine","type":"exact"}],"termid":"GO:0019279","terms_by_termid":{"GO:0019279":null,"GO:0019280":null,"GO:0019281":null}}


id: GO:1902847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of neuronal signal transduction.","definition_xrefs":["GOC:TermGenie","GOC:sjp","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"regulates","term_name":"neuronal signal transduction","termid":"GO:0023041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of neuronal signal transduction","termid":"GO:1902847"}


id: GO:0046647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of gamma-delta T cell proliferation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell proliferation","termid":"GO:0042130"},{"relation_name":"is_a","term_name":"negative regulation of gamma-delta T cell activation","termid":"GO:0046644"},{"relation_name":"is_a","term_name":"regulation of gamma-delta T cell proliferation","termid":"GO:0046646"},{"relation_name":"negatively_regulates","term_name":"gamma-delta T cell proliferation","termid":"GO:0046630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of gamma-delta T cell proliferation","synonyms":[{"name":"down regulation of gamma-delta T cell proliferation","type":"exact"},{"name":"down-regulation of gamma-delta T cell proliferation","type":"exact"},{"name":"downregulation of gamma-delta T cell proliferation","type":"exact"},{"name":"inhibition of gamma-delta T cell proliferation","type":"narrow"},{"name":"negative regulation of gamma-delta T lymphocyte proliferation","type":"exact"},{"name":"negative regulation of gamma-delta T-cell proliferation","type":"exact"},{"name":"negative regulation of gamma-delta T-lymphocyte proliferation","type":"exact"}],"termid":"GO:0046647"}


id: GO:0021920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of neuronal precursors to association neurons in the dorsal spinal cord.","definition_xrefs":["GOC:dph","GOC:jid","GOC:cls","GOC:dgh","PMID:12593981","GO_REF:0000021"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification (obsolete GO:0021920)","termid":"GO:0021920"}


id: PBO:0059948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 34","termid":"PBO:0059948"}


id: FYPO:0007482
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the meiotic spindle pole body is decreased during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah","PMID:27889481"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to meiotic spindle pole body","termid":"FYPO:0002772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000054","FYPO:0000002","FYPO:0001985","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to meiotic spindle pole body during meiosis I","synonyms":[{"name":"decreased protein localisation to meiotic spindle pole body during meiosis I","type":"exact"},{"name":"decreased protein localization to meiotic SPB during meiosis I","type":"exact"},{"name":"decreased protein localization to meiotic spindle pole body during first meiotic nuclear division","type":"exact"},{"name":"decreased protein localization to spindle pole body during meiosis I","type":"exact"},{"name":"reduced protein localization to meiotic spindle pole body during meiosis I","type":"exact"}],"termid":"FYPO:0007482"}


id: GO:0031929
data:
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id: PBO:0047229
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 230 member A","termid":"PBO:0047229"}


id: GO:0004803
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id: GO:0016755
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id: PBO:0028675
data:
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id: PBO:0008140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEMD3 domain","termid":"PBO:0008140"}


id: FYPO:0007062
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of Atg1/ULK1 kinase complex assembly is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein complex assembly","termid":"FYPO:0000447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased Atg1/ULK1 kinase complex assembly","synonyms":[{"name":"decreased Atg1/ULK1 kinase complex assembly during mitotic cell cycle","type":"related"},{"name":"decreased Atg1/ULK1 kinase11 complex assembly during vegetative growth","type":"exact"},{"name":"reduced Atg1/ULK1 kinase complex assembly","type":"exact"}],"termid":"FYPO:0007062"}


id: GO:0052164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters or subverts either the host signal transduction pathways leading to the production of reactive oxygen species as part of the host innate immune response.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to oxidative stress","termid":"GO:0034599"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host innate immune response","termid":"GO:0052167"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont defense to host-produced reactive oxygen species","secondary_identifiers":["GO:0052567","GO:0052059","GO:0052385","GO:0052303","GO:0052550"],"synonyms":[{"name":"evasion by symbiont of cellular damage caused by host oxidative burst","type":"narrow"},{"name":"evasion or tolerance by organism of host-produced reactive oxygen species","type":"exact"},{"name":"evasion or tolerance by organism of reactive oxygen species produced by other organism involved in symbiotic interaction","type":"broad"},{"name":"evasion or tolerance by organism of reactive oxygen species produced during host defense response","type":"exact"},{"name":"evasion or tolerance by symbiont of host-produced reactive oxygen species","type":"exact"},{"name":"evasion or tolerance by symbiont of reactive oxygen species produced by other organism involved in symbiotic interaction","type":"broad"},{"name":"evasion or tolerance of defense-related host metabolic burst","type":"exact"},{"name":"evasion or tolerance of defense-related host oxidative burst","type":"exact"},{"name":"evasion or tolerance of defense-related host respiratory burst","type":"exact"},{"name":"evasion or tolerance of host-produced AOS","type":"exact"},{"name":"evasion or tolerance of host-produced ROIs","type":"exact"},{"name":"evasion or tolerance of host-produced ROS","type":"exact"},{"name":"evasion or tolerance of host-produced active oxygen species","type":"exact"},{"name":"evasion or tolerance of host-produced reactive oxygen intermediates","type":"exact"},{"name":"evasion or tolerance of reactive oxygen species produced by host","type":"exact"},{"name":"modulation by organism of defense-related host AOS production","type":"exact"},{"name":"modulation by organism of defense-related host ROI production","type":"exact"},{"name":"modulation by organism of defense-related host ROS production","type":"exact"},{"name":"modulation by organism of defense-related host active oxygen species production","type":"exact"},{"name":"modulation by organism of defense-related host metabolic burst","type":"exact"},{"name":"modulation by organism of defense-related host oxidative burst","type":"exact"},{"name":"modulation by organism of defense-related host reactive oxidative species production","type":"exact"},{"name":"modulation by organism of defense-related host reactive oxygen intermediate production","type":"exact"},{"name":"modulation by organism of defense-related host respiratory burst","type":"exact"},{"name":"modulation by organism of defense-related reactive oxygen species production in other organism involved in symbiotic interaction","type":"broad"},{"name":"modulation by symbiont of defense-related host reactive oxygen species production","type":"related"},{"name":"response to defense-related host reactive oxygen species production","type":"related"},{"name":"response to defense-related reactive oxygen species production by other organism involved in symbiotic interaction","type":"broad"}],"termid":"GO:0052164"}


id: PBO:0002807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"superoxide dismutase copper chaperone Ccs1","termid":"PBO:0002807"}


id: GO:0022001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency or rate at which a cell adopts an anterior neural cell fate.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dgh","GOC:jid","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell fate commitment","termid":"GO:0010454"},{"relation_name":"is_a","term_name":"negative regulation of nervous system development","termid":"GO:0051961"},{"relation_name":"part_of","term_name":"neural plate anterior/posterior regionalization","termid":"GO:0021999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of anterior neural cell fate commitment of the neural plate","synonyms":[{"name":"caudalization of neural plate","type":"exact"},{"name":"down regulation of anterior neural cell fate of the neural plate","type":"exact"},{"name":"down-regulation of anterior neural cell fate of the neural plate","type":"exact"},{"name":"downregulation of anterior neural cell fate of the neural plate","type":"exact"},{"name":"inhibition of anterior neural cell fate of the neural plate","type":"narrow"},{"name":"negative regulation of anterior neural cell fate of the neural plate","type":"exact"},{"name":"posteriorization","type":"broad"}],"termid":"GO:0022001"}


id: PBO:0075247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 17","termid":"PBO:0075247"}


id: GO:1900106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hyaluranon cable assembly.","definition_xrefs":["GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of hyaluranon cable assembly","termid":"GO:1900104"},{"relation_name":"positively_regulates","term_name":"hyaluranon cable assembly","termid":"GO:0036118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of hyaluranon cable assembly","synonyms":[{"name":"activation of HA cable assembly","type":"exact"},{"name":"activation of hyaluranon cable assembly","type":"narrow"},{"name":"positive regulation of HA cable assembly","type":"exact"},{"name":"up regulation of HA cable assembly","type":"exact"},{"name":"up regulation of hyaluranon cable assembly","type":"exact"},{"name":"up-regulation of HA cable assembly","type":"exact"},{"name":"up-regulation of hyaluranon cable assembly","type":"exact"},{"name":"upregulation of HA cable assembly","type":"exact"},{"name":"upregulation of hyaluranon cable assembly","type":"exact"}],"termid":"GO:1900106"}


id: GO:0032499
data:
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id: GO:0061516
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id: FYPO:0005199
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of a protein kinase activity occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah","PMID:14739927"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of catalytic activity","termid":"FYPO:0004916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased negative regulation of protein kinase activity","synonyms":[{"name":"decreased inhibition of protein kinase activity","type":"narrow"},{"name":"decreased negative regulation of protein kinase activity during mitotic cell cycle","type":"related"},{"name":"decreased negative regulation of protein kinase activity during vegetative growth","type":"exact"},{"name":"reduced negative regulation of protein kinase activity","type":"exact"}],"termid":"FYPO:0005199"}


id: PBO:0069043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 288, pseudogene","termid":"PBO:0069043"}


id: PBO:0059522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5","termid":"PBO:0059522"}


id: GO:0018270
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-alanine ethanolamide-linked glycosylphosphatidylinositol (GPI) anchor following hydrolysis of an alanyl-peptide bond in the carboxy-terminal region of a membrane-associated protein.","definition_xrefs":["RESID:AA0163"],"gene_count":0,"genotype_count":0,"name":"obsolete GPI anchor biosynthetic process via N-alanyl-glycosylphosphatidylinositolethanolamine (obsolete GO:0018270)","termid":"GO:0018270"}


id: GO:0047065
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O2 + 2 sulochrin = 2 (2R)-bisdechlorogeodin + 2 H2O.","definition_xrefs":["RHEA:22616","EC:1.21.3.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor","termid":"GO:0046993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"sulochrin oxidase [(-)-bisdechlorogeodin-forming] activity","secondary_identifiers":["MetaCyc:1.10.3.8-RXN","KEGG_REACTION:R00061"],"synonyms":[{"name":"sulochrin oxidase activity","type":"broad"},{"name":"sulochrin:oxygen oxidoreductase (cyclizing, (-)-specific)","type":"related"}],"termid":"GO:0047065"}


id: PBO:0038407
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-directly_regulates_activity_of","termid":"PBO:0038407"}


id: GO:0036214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a contractile ring is positioned or maintained in a specific location.","definition_xrefs":["GOC:vw","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete contractile ring localization (obsolete GO:0036214)","termid":"GO:0036214"}


id: GO:0035334
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The proteolytic cleavages to the Notch protein that occur prior to ligand binding. A primary cleavage event within the extracellular domain whilst the Notch protein in still in the secretory pathway, leads to the transportation of a processed heterodimer to the cell surface.","definition_xrefs":["PMID:12651094","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein processing","termid":"GO:0016485"},{"relation_name":"part_of","term_name":"Notch receptor processing","termid":"GO:0007220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"Notch receptor processing, ligand-independent","synonyms":[{"name":"Notch S1 cleavage","type":"narrow"}],"termid":"GO:0035334"}


id: GO:1990829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to C-rich, single-stranded DNA.","definition_xrefs":["PMID:8127654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single-stranded DNA binding","termid":"GO:0003697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003677"],"is_obsolete":false,"name":"C-rich single-stranded DNA binding","synonyms":[{"name":"C-rich ssDNA binding","type":"exact"}],"termid":"GO:1990829"}


id: PBO:0084448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mannoprotein that exhibits a tight association with the cell wall; required for cell wall stability in the absence of GPI-anchored mannoproteins; has a high serine-threonine content; expression is induced in cell wall mutants; SRL1 has a paralog, SVS1, that arose from the whole genome duplication","termid":"PBO:0084448"}


id: GO:0042199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cyanuric acid, a suspected gastrointestinal or liver toxicant, and a potential degradation product of triazine herbicides, such as atrazine and simazine. It is widely used for the stabilization of available chlorine in swimming pool water and is also the starting compound for the synthesis of many organic derivatives.","definition_xrefs":["UM-BBD_pathwayID:cya"],"direct_ancestors":[{"relation_name":"is_a","term_name":"s-triazine compound metabolic process","termid":"GO:0018965"},{"relation_name":"is_a","term_name":"organic hydroxy compound metabolic process","termid":"GO:1901615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cyanuric acid metabolic process","synonyms":[{"name":"cyanuric acid metabolism","type":"exact"}],"termid":"GO:0042199"}


id: GO:0032926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any activin receptor signaling pathway.","definition_xrefs":["GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of activin receptor signaling pathway","termid":"GO:0032925"},{"relation_name":"is_a","term_name":"negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0090101"},{"relation_name":"negatively_regulates","term_name":"activin receptor signaling pathway","termid":"GO:0032924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of activin receptor signaling pathway","synonyms":[{"name":"down regulation of activin receptor signaling pathway","type":"exact"},{"name":"down-regulation of activin receptor signaling pathway","type":"exact"},{"name":"downregulation of activin receptor signaling pathway","type":"exact"},{"name":"inhibition of activin receptor signaling pathway","type":"narrow"},{"name":"negative regulation of activin receptor signalling pathway","type":"exact"},{"name":"negative regulation of activin signaling pathway","type":"related"},{"name":"negative regulation of activin signalling pathway","type":"related"}],"termid":"GO:0032926"}


id: PBO:0075100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 149","termid":"PBO:0075100"}


id: PBO:0073355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family C member 1","termid":"PBO:0073355"}


id: PBO:0111929
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centaurin ADOP ribosylation factor GTPase activating protein family","termid":"PBO:0111929"}


id: PBO:0112906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-X, glycosylphosphatidylinositol-mannosyltransferase I complex subunit pig-X","termid":"PBO:0112906"}


id: PR:P36581
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A calnexin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR11073:SF1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calnexin homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3C7.11c","secondary_identifiers":["UniProtKB:P36581"],"synonyms":[{"name":"SPAC3C7.11c","type":"related"},{"name":"Spom972h-CANX","type":"exact"},{"name":"cnx1","type":"related"}],"termid":"PR:P36581"}


id: PBO:0088776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin/importin beta family nuclear import signal receptor Kap111","termid":"PBO:0088776"}


id: PBO:0030069
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_asparagine_import","termid":"PBO:0030069"}


id: PBO:0046615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group PABLB member 1, envelope","termid":"PBO:0046615"}


id: PBO:0060129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 30","termid":"PBO:0060129"}


id: GO:1900060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of a ceramide biosynthetic process.","definition_xrefs":["PMID:15302821","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of amide metabolic process","termid":"GO:0034249"},{"relation_name":"is_a","term_name":"negative regulation of sphingolipid biosynthetic process","termid":"GO:0090155"},{"relation_name":"is_a","term_name":"regulation of ceramide biosynthetic process","termid":"GO:2000303"},{"relation_name":"negatively_regulates","term_name":"ceramide biosynthetic process","termid":"GO:0046513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0006629"],"is_obsolete":false,"name":"negative regulation of ceramide biosynthetic process","synonyms":[{"name":"down regulation of ceramide anabolism","type":"exact"},{"name":"down regulation of ceramide biosynthesis","type":"exact"},{"name":"down regulation of ceramide biosynthetic process","type":"related"},{"name":"down regulation of ceramide formation","type":"exact"},{"name":"down regulation of ceramide synthesis","type":"exact"},{"name":"down-regulation of ceramide anabolism","type":"exact"},{"name":"down-regulation of ceramide biosynthesis","type":"exact"},{"name":"down-regulation of ceramide biosynthetic process","type":"related"},{"name":"down-regulation of ceramide formation","type":"exact"},{"name":"down-regulation of ceramide synthesis","type":"exact"},{"name":"downregulation of ceramide anabolism","type":"exact"},{"name":"downregulation of ceramide biosynthesis","type":"exact"},{"name":"downregulation of ceramide biosynthetic process","type":"related"},{"name":"downregulation of ceramide formation","type":"exact"},{"name":"downregulation of ceramide synthesis","type":"exact"},{"name":"inhibition of ceramide anabolism","type":"exact"},{"name":"inhibition of ceramide biosynthesis","type":"exact"},{"name":"inhibition of ceramide biosynthetic process","type":"related"},{"name":"inhibition of ceramide formation","type":"exact"},{"name":"inhibition of ceramide synthesis","type":"exact"},{"name":"negative regulation of ceramide anabolism","type":"exact"},{"name":"negative regulation of ceramide biosynthesis","type":"exact"},{"name":"negative regulation of ceramide formation","type":"exact"},{"name":"negative regulation of ceramide synthesis","type":"exact"}],"termid":"GO:1900060"}


id: PBO:0065525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patched 2","termid":"PBO:0065525"}


id: PBO:0069126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 376, pseudogene","termid":"PBO:0069126"}


id: PBO:0074966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-8","termid":"PBO:0074966"}


id: PBO:0054158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1525","termid":"PBO:0054158"}


id: PBO:0091465
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamine substrate KM 800 uM, 2-oxoglutarate substrate KM 9 uM, NADH substrate KM 11 uM, pH optimum 6.4","termid":"PBO:0091465"}


id: GO:0004449
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH.","definition_xrefs":["RHEA:23632"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isocitrate dehydrogenase [NAD(P)+] activity","termid":"GO:0004448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"isocitrate dehydrogenase (NAD+) activity","secondary_identifiers":["Reactome:R-HSA-70967","EC:1.1.1.41","MetaCyc:ISOCITRATE-DEHYDROGENASE-NAD+-RXN"],"synonyms":[{"name":"NAD dependent isocitrate dehydrogenase activity","type":"exact"},{"name":"NAD isocitrate dehydrogenase activity","type":"exact"},{"name":"NAD isocitric dehydrogenase activity","type":"exact"},{"name":"NAD-linked isocitrate dehydrogenase activity","type":"exact"},{"name":"NAD-specific isocitrate dehydrogenase activity","type":"exact"},{"name":"isocitrate dehydrogenase (NAD) activity","type":"exact"},{"name":"isocitrate:NAD+ oxidoreductase (decarboxylating)","type":"exact"},{"name":"nicotinamide adenine dinucleotide isocitrate dehydrogenase activity","type":"exact"}],"termid":"GO:0004449"}


id: PBO:0074839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 32B","termid":"PBO:0074839"}


id: PBO:0050157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 3 pseudogene 13","termid":"PBO:0050157"}


id: GO:0007248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Movement of a MAP kinase to the nucleus in the context of transduction of mating pheromone signal, as described for Saccharomyces.","definition_xrefs":["PMID:9561267"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear translocation of MAPK (mating sensu Saccharomyces) (obsolete GO:0007248)","synonyms":[{"name":"nuclear translocation of MAPK (mating sensu Saccharomyces)","type":"exact"}],"termid":"GO:0007248"}


id: GO:1901808
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of capsanthin.","definition_xrefs":["UniPathway:UPA00806","MetaCyc:PWY-5174","GOC:yaf","GOC:TermGenie","PMID:10995282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xanthophyll catabolic process","termid":"GO:0016124"},{"relation_name":"is_a","term_name":"capsanthin metabolic process","termid":"GO:1901807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044248"],"is_obsolete":false,"name":"capsanthin catabolic process","synonyms":[{"name":"capsanthin breakdown","type":"exact"},{"name":"capsanthin catabolism","type":"exact"},{"name":"capsanthin degradation","type":"exact"}],"termid":"GO:1901808"}


id: GO:0070536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein deubiquitination process in which a K63-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is removed from a protein.","definition_xrefs":["PMID:19202061","PMID:19214193","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein deubiquitination","termid":"GO:0016579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"protein K63-linked deubiquitination","termid":"GO:0070536"}


id: PBO:0027056
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_wall_galactomannan_level","termid":"PBO:0027056"}


id: PBO:0056416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARCHF11 antisense RNA 1","termid":"PBO:0056416"}


id: PBO:0064130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP-dependent protein kinase inhibitor beta","termid":"PBO:0064130"}


id: PBO:0061174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Gln (TTG) 4-1","termid":"PBO:0061174"}


id: PBO:0063818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology like domain family A member 3","termid":"PBO:0063818"}


id: PBO:0092006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Serine (gcu), mitochondrial","termid":"PBO:0092006"}


id: FYPO:0008225
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphate (Pi) measured in a cell (total or free) is higher than normal.","definition_xrefs":["PMID:37949217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular phosphate (Pi) level","termid":"FYPO:0008225"}


id: PBO:0038629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACKR4 pseudogene 1","termid":"PBO:0038629"}


id: FYPO:0002937
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any unspliced or incompletely spliced mRNA precursor measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"decreased pre-mRNA level","synonyms":[{"name":"decreased accumulation of pre-mRNA transcripts","type":"related"},{"name":"decreased pre-mRNA accumulation","type":"related"},{"name":"decreased pre-mRNA level during mitotic cell cycle","type":"related"},{"name":"decreased pre-mRNA level during vegetative growth","type":"exact"},{"name":"decreased pre-mRNA transcript level","type":"exact"},{"name":"reduced pre-mRNA level","type":"exact"}],"termid":"FYPO:0002937"}


id: GO:0016912
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete SAP kinase 5 activity (obsolete GO:0016912)","synonyms":[{"name":"SAP kinase 5 activity","type":"exact"},{"name":"SAPK5","type":"exact"}],"termid":"GO:0016912"}


id: PBO:0043443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calponin 2 pseudogene 3","termid":"PBO:0043443"}


id: PBO:0114074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 5C, pseudogene","termid":"PBO:0114074"}


id: GO:0097606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of the passage or uptake of molecules by the nuclear envelope.","definition_xrefs":["GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of nuclear envelope permeability (obsolete GO:0097606)","synonyms":[{"name":"positive regulation of nuclear membrane permeability","type":"related"}],"termid":"GO:0097606"}


id: GO:0047606
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a (S)-hydroxynitrile = hydrogen cyanide + an aldehyde or ketone.","definition_xrefs":["EC:4.1.2.47","PMID:3377504"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"(S)-hydroxynitrile lyase activity","secondary_identifiers":["GO:0046991"],"synonyms":[{"name":"alpha-hydroxynitrile lyase activity","type":"narrow"},{"name":"hydroxynitrilase activity","type":"broad"},{"name":"hydroxynitrile lyase activity","type":"exact"},{"name":"oxynitrilase activity","type":"related"}],"termid":"GO:0047606"}


id: FYPO:0008019
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cells grow normally (i.e. indistinguishably from wild type) in a medium containing arginine as the nitrogen source.","definition_xrefs":["PMID:7903653","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000003","FYPO:0002058","FYPO:0002057","FYPO:0002060","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on arginine nitrogen source","synonyms":[{"name":"normal cell population growth on arginine nitrogen source","type":"exact"}],"termid":"FYPO:0008019"}


id: GO:0009195
data:
  {"annotated_genes":["SJAG_03676"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110119],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006256"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of pyrimidine ribonucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside diphosphate catabolic process","termid":"GO:0009140"},{"relation_name":"is_a","term_name":"ribonucleoside diphosphate catabolic process","termid":"GO:0009191"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside diphosphate metabolic process","termid":"GO:0009193"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"pyrimidine ribonucleoside diphosphate catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine ribonucleoside diphosphate breakdown","type":"exact"},{"name":"pyrimidine ribonucleoside diphosphate catabolism","type":"exact"},{"name":"pyrimidine ribonucleoside diphosphate degradation","type":"exact"}],"termid":"GO:0009195","terms_by_termid":{"GO:0006256":null}}


id: PR:P87141
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A regulatory-associated protein of mTOR that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00613"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat-containing protein mip1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC57A7.11","secondary_identifiers":["UniProtKB:P87141"],"synonyms":[{"name":"Spom972h-RPTOR","type":"exact"}],"termid":"PR:P87141"}


id: GO:0010874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cholesterol efflux. Cholesterol efflux is the directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cholesterol transport","termid":"GO:0032374"},{"relation_name":"regulates","term_name":"cholesterol efflux","termid":"GO:0033344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of cholesterol efflux","termid":"GO:0010874"}


id: PBO:0070180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 95 pseudogene","termid":"PBO:0070180"}


id: PBO:0069547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 818, pseudogene","termid":"PBO:0069547"}


id: PBO:0059259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MRPL23 antisense RNA 1","termid":"PBO:0059259"}


id: GO:2000894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a cellotriose.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide catabolic process","termid":"GO:0009313"},{"relation_name":"is_a","term_name":"cellotriose metabolic process","termid":"GO:2000893"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"cellotriose catabolic process","synonyms":[{"name":"cellotriose catabolism","type":"exact"}],"termid":"GO:2000894"}


id: PBO:0000434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DYRK family protein kinase Pom1","termid":"PBO:0000434"}


id: PBO:0078312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asp (GTC) 8-1","termid":"PBO:0078312"}


id: GO:0098938
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The actin cytoskeleton that is part of a dendritic spine.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeleton of dendritic spine","termid":"GO:0098836"},{"relation_name":"is_a","term_name":"postsynaptic actin cytoskeleton","termid":"GO:0098871"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0015629"}],"interesting_parent_ids":["GO:0015629","GO:0005575"],"is_obsolete":false,"name":"actin cytoskeleton of dendritic spine","termid":"GO:0098938"}


id: PBO:0041850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase 1","termid":"PBO:0041850"}


id: GO:0006913
data:
  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directed movement of molecules between the nucleus and the cytoplasm.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear 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transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0000063"],"synonyms":[{"name":"nucleocytoplasmic shuttling","type":"narrow"}],"termid":"GO:0006913","terms_by_termid":{"GO:0000054":null,"GO:0000055":null,"GO:0000056":null,"GO:0006404":null,"GO:0006405":null,"GO:0006406":null,"GO:0006409":null,"GO:0006606":null,"GO:0006607":null,"GO:0006611":null,"GO:0006913":null,"GO:0016973":null,"GO:0031990":null,"GO:0042307":null,"GO:0042308":null,"GO:0046827":null,"GO:0051170":null,"GO:0071528":null}}


id: PBO:0075212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntrophin beta 2","termid":"PBO:0075212"}


id: FYPO:0007394
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the structure of one or more RNA molecules differs from normal.","definition_xrefs":["PomBase:mah","PMID:24793650"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985"],"is_obsolete":false,"name":"abnormal RNA structure","synonyms":[{"name":"abnormal RNA secondary structure","type":"narrow"}],"termid":"FYPO:0007394"}


id: PBO:0004644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT III complex subunit Did2 (predicted)","termid":"PBO:0004644"}


id: GO:1900805
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of brevianamide F. Brevianamide F is the biosynthetic precursor of a large family of biologically active prenylated tryptophan-proline 2,5-diketopiperazines that are produced by some fungi.","definition_xrefs":["PMID:16755625","GOC:di","PMID:17464044","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"indole alkaloid biosynthetic process","termid":"GO:0035835"},{"relation_name":"is_a","term_name":"indole-containing compound biosynthetic process","termid":"GO:0042435"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"brevianamide F biosynthetic process","secondary_identifiers":["GO:1900803"],"synonyms":[{"name":"C16H17N3O2 anabolism","type":"related"},{"name":"C16H17N3O2 biosynthesis","type":"related"},{"name":"C16H17N3O2 biosynthetic process","type":"related"},{"name":"C16H17N3O2 formation","type":"related"},{"name":"C16H17N3O2 synthesis","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride anabolism","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride biosynthesis","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride biosynthetic process","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride formation","type":"related"},{"name":"L-prolyl-L-tryptophan anhydride synthesis","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride anabolism","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride biosynthesis","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride biosynthetic process","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride formation","type":"related"},{"name":"L-tryptophyl-L-proline cyclic anhydride synthesis","type":"related"},{"name":"brevianamide F anabolism","type":"exact"},{"name":"brevianamide F biosynthesis","type":"exact"},{"name":"brevianamide F formation","type":"exact"},{"name":"brevianamide F metabolic process","type":"narrow"},{"name":"brevianamide F synthesis","type":"exact"},{"name":"cyclo-(Trp-Pro) anabolism","type":"related"},{"name":"cyclo-(Trp-Pro) biosynthesis","type":"related"},{"name":"cyclo-(Trp-Pro) biosynthetic process","type":"related"},{"name":"cyclo-(Trp-Pro) formation","type":"related"},{"name":"cyclo-(Trp-Pro) synthesis","type":"related"},{"name":"cyclo-L-Trp-L-Pro anabolism","type":"related"},{"name":"cyclo-L-Trp-L-Pro biosynthesis","type":"related"},{"name":"cyclo-L-Trp-L-Pro biosynthetic process","type":"related"},{"name":"cyclo-L-Trp-L-Pro formation","type":"related"},{"name":"cyclo-L-Trp-L-Pro synthesis","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline anabolism","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline biosynthesis","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline biosynthetic process","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline formation","type":"related"},{"name":"cyclo-L-tryptophanyl-L-proline synthesis","type":"related"},{"name":"tryptophan-proline diketopiperazine anabolism","type":"related"},{"name":"tryptophan-proline diketopiperazine biosynthesis","type":"related"},{"name":"tryptophan-proline diketopiperazine biosynthetic process","type":"related"},{"name":"tryptophan-proline diketopiperazine formation","type":"related"},{"name":"tryptophan-proline diketopiperazine synthesis","type":"related"}],"termid":"GO:1900805"}


id: PBO:0044385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily A member 7 pseudogene 2","termid":"PBO:0044385"}


id: PBO:0043409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CKLF like MARVEL transmembrane domain containing 6","termid":"PBO:0043409"}


id: PBO:0067307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 393, pseudogene","termid":"PBO:0067307"}


id: GO:2000061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ureter smooth muscle cell differentiation.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:obol","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle organ development","termid":"GO:0048634"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell differentiation","termid":"GO:0051150"},{"relation_name":"regulates","term_name":"ureter smooth muscle cell differentiation","termid":"GO:0072193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ureter smooth muscle cell differentiation","termid":"GO:2000061"}


id: PBO:0074803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 13H","termid":"PBO:0074803"}


id: GO:1990274
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any disaggregation of an actomyosin contractile ring into its constituent components that is involved in a mitotic cell cycle.","definition_xrefs":["PMID:14602073","PMID:22891673"],"gene_count":0,"genotype_count":0,"name":"obsolete mitotic actomyosin contractile ring disassembly (obsolete GO:1990274)","termid":"GO:1990274"}


id: PBO:0030979
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_dimethylation","termid":"PBO:0030979"}


id: SO:0100004
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of 3 consecutive residues with dihedral angles as follows: res i: phi -90 bounds -120 to -60, res i: psi -10 bounds -50 to 30, res i+1: phi -75 bounds -100 to -50, res i+1: psi 140 bounds 110 to 170. An extra restriction of the length of the O to O distance would be useful, that it be less than 5 Angstrom. More precisely these two oxygens are the main chain carbonyl oxygen atoms of residues i-1 and i+1.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_secondary_structure","termid":"SO:0001078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"catmat_left_handed_three","synonyms":[{"name":"catmat-3l","type":"exact"}],"termid":"SO:0100004"}


id: GO:1901802
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 1,5-anhydro-D-fructose.","definition_xrefs":["GOC:TermGenie","GOC:yaf","MetaCyc:PWY-6992","PMID:15716041","UniPathway:UPA00738"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"polyol catabolic process","termid":"GO:0046174"},{"relation_name":"is_a","term_name":"monosaccharide catabolic process","termid":"GO:0046365"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"},{"relation_name":"is_a","term_name":"1,5-anhydro-D-fructose metabolic process","termid":"GO:1901801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044248","GO:0044281"],"is_obsolete":false,"name":"1,5-anhydro-D-fructose catabolic process","synonyms":[{"name":"1,5-anhydro-D-fructose breakdown","type":"exact"},{"name":"1,5-anhydro-D-fructose catabolism","type":"exact"},{"name":"1,5-anhydro-D-fructose degradation","type":"exact"}],"termid":"GO:1901802"}


id: PBO:0072381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 7","termid":"PBO:0072381"}


id: GO:0047886
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesol + NADP+ = 2-trans,6-trans-farnesal + H+ + NADPH.","definition_xrefs":["RHEA:14697","EC:1.1.1.216"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"farnesol dehydrogenase activity","secondary_identifiers":["MetaCyc:FARNESOL-DEHYDROGENASE-RXN","KEGG_REACTION:R03264"],"synonyms":[{"name":"2-trans,6-trans-farnesol:NADP+ 1-oxidoreductase activity","type":"related"},{"name":"NADP-farnesol dehydrogenase activity","type":"related"},{"name":"farnesol (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity","type":"related"}],"termid":"GO:0047886"}


id: GO:0044389
data:
  {"annotated_genes":["SJAG_00803","SJAG_01365","SJAG_01134","SJAG_03575","SJAG_03843","SJAG_02253","SJAG_01686","SJAG_00452","SJAG_01540","SJAG_04573","SJAG_04335","SJAG_01226","SJAG_02591","SJAG_03643","SJAG_00615"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74353],"is_not":false,"summary":null,"term":"GO:0044389"},{"annotations":[74579,77263,77938,71763,75777,72427,77839,78114,69425,73812,78426,70895,79078,66495],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031625"}]},"cv_name":"molecular_function","definition":"Binding to a ubiquitin-like protein ligase, such as ubiquitin-ligase.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00452":null,"SJAG_00615":null,"SJAG_00803":null,"SJAG_01134":null,"SJAG_01226":null,"SJAG_01365":null,"SJAG_01540":null,"SJAG_01686":null,"SJAG_02253":null,"SJAG_02591":null,"SJAG_03575":null,"SJAG_03643":null,"SJAG_03843":null,"SJAG_04335":null,"SJAG_04573":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"ubiquitin-like protein ligase binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"synonyms":[{"name":"E3 protein ligase binding","type":"exact"},{"name":"small conjugating protein ligase binding","type":"exact"}],"termid":"GO:0044389","terms_by_termid":{"GO:0031625":null,"GO:0044389":null}}


id: FYPO:0006106
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) at the central core of the centromeric regions does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished chromatin binding","termid":"FYPO:0001093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000702","FYPO:0000652"],"is_obsolete":false,"name":"abolished chromatin binding at centromere central core","synonyms":[{"name":"chromatin binding at centromere central core abolished","type":"exact"}],"termid":"FYPO:0006106"}


id: PR:Q9C106
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerase III subunit RPC3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01373","PANTHER:PTHR12949:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III subunit rpc3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1E7.03","secondary_identifiers":["UniProtKB:Q9C106"],"synonyms":[{"name":"RNA polymerase III subunit C3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase III subunit C82 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-POLR3C","type":"exact"}],"termid":"PR:Q9C106"}


id: GO:0008752
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+. This reaction can utilize NADH and NADPH with similar reaction rates.","definition_xrefs":["EC:1.5.1.39"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"FMN reductase (NAD(P)H) activity","secondary_identifiers":["RHEA:21624","RHEA:21620"],"synonyms":[{"name":"FMN reductase activity","type":"broad"},{"name":"NAD(P)H dehydrogenase (FMN) activity","type":"exact"},{"name":"NAD(P)H-dependent FMN reductase activity","type":"related"},{"name":"flavin mononucleotide reductase activity","type":"related"}],"termid":"GO:0008752"}


id: MOD:00408
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue amino or imino hydrogen with an acetyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylated residue","termid":"MOD:00394"},{"relation_name":"is_a","term_name":"N-acylated residue","termid":"MOD:00670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N-acetylated residue","synonyms":[{"name":"N-Acetyl","type":"exact"},{"name":"N-Acetylation","type":"exact"},{"name":"NAcRes","type":"exact"}],"termid":"MOD:00408"}


id: PBO:0075975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal transducer and activator of transcription 1","termid":"PBO:0075975"}


id: FYPO:0008088
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the oscillations of homologous chromosomes which occurs at meiotic metaphase I is abolished.","definition_xrefs":["PMID:33529549"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome oscillation at meiotic metaphase I","termid":"FYPO:0008098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished chromosome oscillation at meiotic metaphase I","synonyms":[{"name":"loss of chromosome oscillation at meiotic metaphase I","type":"exact"}],"termid":"FYPO:0008088"}


id: FYPO:0007103
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a short meiotic spindle assembles during meiosis I, and may begin elongation, but does not elongate normally or completely, and eventually collapses. Upon collapse the spindle may break or shrink.","definition_xrefs":["PMID:22292001","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic spindle collapse","termid":"FYPO:0007083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"spindle collapse during meiosis I","synonyms":[{"name":"broken spindle during meiosis I","type":"related"},{"name":"meiotic spindle collapse during meiosis I","type":"exact"},{"name":"spindle breakage during meiosis I","type":"related"},{"name":"spindle collapse during first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0007103"}


id: GO:0047715
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + hypotaurocyamine = N(omega)-phosphohypotaurocyamine + ADP + 2 H+.","definition_xrefs":["RHEA:24008","EC:2.7.3.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, nitrogenous group as acceptor","termid":"GO:0016775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016301","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"hypotaurocyamine kinase activity","secondary_identifiers":["KEGG_REACTION:R03939","MetaCyc:HYPOTAUROCYAMINE-KINASE-RXN"],"synonyms":[{"name":"ATP:hypotaurocyamine N-phosphotransferase activity","type":"related"}],"termid":"GO:0047715"}


id: GO:0034545
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: fumarylpyruvate + H2O = fumarate + pyruvate + H+.","definition_xrefs":["UM-BBD_reactionID:r0811"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"fumarylpyruvate hydrolase activity","secondary_identifiers":["EC:3.7.1.20","RHEA:26168"],"termid":"GO:0034545"}


id: PR:Q9P6P9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pkp1 gene.","definition_xrefs":["UniProtKB:Q9P6P9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"[Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC644.11c","synonyms":[{"name":"Spom972h-pkp1","type":"exact"},{"name":"pyruvate dehydrogenase kinase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6P9"}


id: PBO:0064815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 6","termid":"PBO:0064815"}


id: PBO:0051634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inner mitochondrial membrane peptidase subunit 2","termid":"PBO:0051634"}


id: PBO:0114093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase membrane subunit, Atp9","termid":"PBO:0114093"}


id: PBO:0109116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase 13, eEF1A N-terminus and K55","termid":"PBO:0109116"}


id: PBO:0069845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1131, pseudogene","termid":"PBO:0069845"}


id: PBO:0091834
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lives If Zapped","termid":"PBO:0091834"}


id: PATO:0000306
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000306 absolute age value (obsolete PATO:0000306)","termid":"PATO:0000306"}


id: PBO:0048800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GNAS antisense RNA 1","termid":"PBO:0048800"}


id: PBO:0036213
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-ubiquitinated_protein_absent_from_cell_during_vegetative_growth","termid":"PBO:0036213"}


id: PBO:0112989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Actin filament binding protein; regulates actin filament capping by recruiting capping protein to endocytic sites and to the cytokinetic actin ring; interacts with the capping protein complex; adapter that links synaptojanins, Inp52p and Inp53p, to the cortical actin cytoskeleton; contains two WH2-like actin binding domains and a C-terminal capping protein interaction (CPI) motif","termid":"PBO:0112989"}


id: GO:0018776
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: trans-3-chloroacrylic acid + H2O = H+ + malonate semialdehyde.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete trans-chloroacrylic acid dehalogenase activity (obsolete GO:0018776)","termid":"GO:0018776"}


id: PBO:0085556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein containing an N-terminal epsin-like domain; involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p","termid":"PBO:0085556"}


id: SO:1000132
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The effect of a change in nucleotide sequence.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000132 sequence_variant_effect (obsolete SO:1000132)","synonyms":[{"name":"sequence variant effect","type":"related"}],"termid":"SO:1000132"}


id: SO:0000492
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Recombination signal including D-heptamer, D-spacer and D-nonamer in 5' of D-region of a D-gene or D-sequence.","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immune_system_gene_recombination_signal_feature","termid":"SO:0000939"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D_gene_recombination_feature","synonyms":[{"name":"D gene recombination feature","type":"exact"}],"termid":"SO:0000492"}


id: PBO:0030332
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_phospholipid_level","termid":"PBO:0030332"}


id: PBO:0048285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypeptide N-acetylgalactosaminyltransferase like 5","termid":"PBO:0048285"}


id: CHEBI:47600
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purvalanol A","termid":"CHEBI:47600"}


id: PBO:0053477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 448","termid":"PBO:0053477"}


id: GO:0050985
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The sulfation of peptidyl-threonine to form peptidyl-O-sulfo-L-threonine.","definition_xrefs":["RESID:AA0362"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-threonine sulfation (obsolete GO:0050985)","termid":"GO:0050985"}


id: FYPO:0001427
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of mitotic DNA replication is abnormal, resulting in a single round of rereplication of the entire genome, which takes place more slowly than normal replication.","definition_xrefs":["PMID:10388806","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"DNA content increased during vegetative growth","termid":"FYPO:0000158"},{"relation_name":"is_a","term_name":"abnormal negative regulation of mitotic DNA replication initiation","termid":"FYPO:0000216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in slow rereplication","synonyms":[{"name":"abnormal negative regulation of DNA replication initiation during vegetative growth, resulting in slow rereplication","type":"exact"},{"name":"abnormal negative regulation of DNA replication initiation resulting in slow rereplication during mitotic cell cycle","type":"related"},{"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in slow re-replication","type":"exact"},{"name":"slow mitotic DNA re-replication","type":"related"},{"name":"slow mitotic DNA rereplication","type":"related"}],"termid":"FYPO:0001427"}


id: PBO:0067017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 28, pseudogene","termid":"PBO:0067017"}


id: PBO:0067886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 188","termid":"PBO:0067886"}


id: PBO:0089609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit Emc1","termid":"PBO:0089609"}


id: PBO:0057289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 509-1","termid":"PBO:0057289"}


id: PBO:0036215
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H4-K5,_H4-K8,_H4-K12_and_H4-K16_acetylation_at_centromere_central_core_during_vegetative_growth","termid":"PBO:0036215"}


id: SO:1000031
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosomal structure variation whereby more than one chromosome is involved.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"interchromosomal","termid":"SO:0001511"},{"relation_name":"is_a","term_name":"chromosome_structure_variation","termid":"SO:1000183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interchromosomal_mutation","synonyms":[{"name":"interchromosomal mutation","type":"exact"}],"termid":"SO:1000031"}


id: GO:0031936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of chromatin silencing.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of chromatin silencing (obsolete GO:0031936)","synonyms":[{"name":"down regulation of chromatin silencing","type":"exact"},{"name":"down-regulation of chromatin silencing","type":"exact"},{"name":"downregulation of chromatin silencing","type":"exact"},{"name":"inhibition of chromatin silencing","type":"narrow"},{"name":"loss of chromatin silencing","type":"exact"},{"name":"negative regulation of heterochromatic silencing","type":"exact"}],"termid":"GO:0031936"}


id: PBO:0043529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cordon-bleu WH2 repeat protein","termid":"PBO:0043529"}


id: PBO:0082091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphofructo-2-kinase; catalyzes synthesis of fructose-2,6-bisphosphate; inhibited by phosphoenolpyruvate and sn-glycerol 3-phosphate, expression induced by glucose and sucrose, transcriptional regulation involves protein kinase A","termid":"PBO:0082091"}


id: PBO:0076738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"t-complex 11","termid":"PBO:0076738"}


id: PBO:0087034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L16B; N-terminally acetylated, binds 5.8 S rRNA; transcriptionally regulated by Rap1p; homologous to mammalian ribosomal protein L13A and bacterial L13; RPL16B has a paralog, RPL16A, that arose from the whole genome duplication","termid":"PBO:0087034"}


id: PBO:0054047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1388","termid":"PBO:0054047"}


id: GO:0018621
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-sulfobenzoate + H+ + NADH + O2 = 3,4-dihydroxybenzoate + NAD+ + sulfite.","definition_xrefs":["RHEA:13937","EC:1.14.12.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"4-sulfobenzoate 3,4-dioxygenase activity","secondary_identifiers":["MetaCyc:4-SULFOBENZOATE-34-DIOXYGENASE-RXN","KEGG_REACTION:R01636","UM-BBD_reactionID:r0293"],"synonyms":[{"name":"4-sulfobenzoate 3,4-dioxygenase system","type":"related"},{"name":"4-sulfobenzoate dioxygenase activity","type":"related"},{"name":"4-sulfobenzoate,NADH:oxygen oxidoreductase (3,4-hydroxylating, sulfite-forming)","type":"related"},{"name":"4-sulphobenzoate 3,4-dioxygenase activity","type":"exact"}],"termid":"GO:0018621"}


id: FYPO:0003932
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which an exonucleolytic RNA catabolic process that proceeds in the 5' to 3' direction to degrade mRNA encoded in the nucleus is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","GO:0034428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear mRNA catabolic process","termid":"FYPO:0002939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal nuclear 5'-3' exonucleolytic mRNA catabolic process","synonyms":[{"name":"normal 5'-3' exonucleolytic nuclear-transcribed mRNA catabolic process","type":"exact"},{"name":"normal nuclear 5'-3' exonucleolytic mRNA catabolic process during mitotic cell cycle","type":"related"},{"name":"normal nuclear 5'-3' exonucleolytic mRNA catabolic process during vegetative growth","type":"exact"},{"name":"normal nuclear-transcribed mRNA catabolic process, exonucleolytic, 5'-3'","type":"exact"}],"termid":"FYPO:0003932"}


id: PR:O14093
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar protein sorting-associated protein 54 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12965:SF0","OMA:SCHPO01639","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 54 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F3.10","secondary_identifiers":["UniProtKB:O14093"],"synonyms":[{"name":"Spom972h-VPS54","type":"exact"}],"termid":"PR:O14093"}


id: GO:0052546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pectin metabolic process","termid":"GO:0045488"},{"relation_name":"part_of","term_name":"plant-type cell wall organization","termid":"GO:0009664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"cell wall pectin metabolic process","synonyms":[{"name":"cell wall pectin metabolism","type":"exact"},{"name":"cellulose and pectin-containing cell wall pectin metabolic process","type":"exact"},{"name":"pectin metabolism during cell wall biogenesis","type":"exact"},{"name":"plant-type cell wall pectin metabolic process","type":"exact"}],"termid":"GO:0052546"}


id: GO:0036437
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An Isw1 complex that binds DNA and has nucleosome-stimulated ATPase activity. In S. cerevisiae, contains an Isw1p ATPase subunit in complex with Ioc2p and Ioc4p.","definition_xrefs":["PMID:12482963","GOC:jd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Isw1 complex","termid":"GO:0016587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0032991","GO:0005694","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"Isw1b complex","termid":"GO:0036437"}


id: PBO:0080546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WBP1L pseudogene 5","termid":"PBO:0080546"}


id: PBO:0000362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoesterase motif","termid":"PBO:0000362"}


id: PBO:0043598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XXVII alpha 1 chain","termid":"PBO:0043598"}


id: PBO:0045888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 gamma","termid":"PBO:0045888"}


id: PBO:0039710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APOA1 antisense RNA","termid":"PBO:0039710"}


id: GO:0031962
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a nuclear mineralocorticoid receptor.","definition_xrefs":["GOC:mah","PMID:12511169"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear receptor binding","termid":"GO:0016922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"nuclear mineralocorticoid receptor binding","synonyms":[{"name":"mineralocorticoid receptor binding","type":"broad"}],"termid":"GO:0031962"}


id: PBO:0087763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC2 membrane-associated complex; involved in regulation of actin cytoskeletal dynamics during polarized growth and cell wall integrity; interacts with Slm1p and Slm2p, homologous PH domain-containing TORC2 substrates; BIT2 has a paralog, BIT61, that arose from the whole genome duplication","termid":"PBO:0087763"}


id: PBO:0018195
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pombe PNuts","termid":"PBO:0018195"}


id: PBO:0001362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA kinase/phosphatase Pnk1","termid":"PBO:0001362"}


id: PBO:0049932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hematopoietically expressed homeobox","termid":"PBO:0049932"}


id: GO:0048189
data:
  {"annotated_genes":["SJAG_03041","SJAG_00896","SJAG_03635","SJAG_03387","SJAG_07011"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[93447,99221,108379,109211,111867],"is_not":false,"summary":null,"term":"GO:0048189"}]},"cv_name":"cellular_component","definition":"A protein complex involved in regulation of chromatin remodeling. In Schizosaccharomyces the complex contains Lid2, Ash2, Jmj3, Snt2, and Sdc1.","definition_xrefs":["PMID:12488447"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00896":null,"SJAG_03041":null,"SJAG_03387":null,"SJAG_03635":null,"SJAG_07011":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"Lid2 complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0048189","terms_by_termid":{"GO:0048189":null}}


id: PBO:0050762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 24","termid":"PBO:0050762"}


id: PBO:0002330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex subunit Apc4","termid":"PBO:0002330"}


id: PBO:0081610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 534","termid":"PBO:0081610"}


id: GO:0060030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed migration of individual cells and small groups of cells toward the dorsal midline during gastrulation. This process does not require cell rearrangement.","definition_xrefs":["GOC:dgf","GOC:dph","PMID:12062082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration involved in gastrulation","termid":"GO:0042074"},{"relation_name":"part_of","term_name":"convergent extension involved in gastrulation","termid":"GO:0060027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal convergence","termid":"GO:0060030"}


id: PBO:0029775
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony,_branched,_curved,_elongated_cells_(obsolete_FYPO:0002464)","termid":"PBO:0029775"}


id: GO:0050699
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a WW domain of a protein, a small module composed of 40 amino acids and plays a role in mediating protein-protein interactions via proline-rich regions.","definition_xrefs":["PMID:14531730"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"WW domain binding","termid":"GO:0050699"}


