# terms

id: GO:0030604
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-C-methyl-D-erythritol 4-phosphate + NADP+ = 1-deoxy-D-xylulose 5-phosphate + H+ + NADPH.","definition_xrefs":["EC:1.1.1.267","RHEA:13717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity","secondary_identifiers":["KEGG_REACTION:R05688","MetaCyc:DXPREDISOM-RXN"],"synonyms":[{"name":"1-deoxy-D-xylulose-5-phosphate isomeroreductase activity","type":"related"},{"name":"1-deoxyxylulose-5-phosphate reductoisomerase activity","type":"related"},{"name":"2-C-methyl-D-erythritol-4-phosphate:NADP+ oxidoreductase (isomerizing)","type":"related"},{"name":"2C-methyl-D-erythritol-4-phosphate (MEP) synthase activity","type":"related"},{"name":"DOXP reductoisomerase activity","type":"exact"},{"name":"DXP-reductoisomerase activity","type":"related"}],"termid":"GO:0030604"}


id: PBO:0066856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 156","termid":"PBO:0066856"}


id: PBO:0088167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD40 repeat-containing subunit of Set3C histone deacetylase complex; complex represses early/middle sporulation genes; antagonizes telomeric silencing; binds specifically to the Sir4p N-terminus","termid":"PBO:0088167"}


id: PBO:0053616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 656","termid":"PBO:0053616"}


id: FYPO:0007506
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at one or more specific promoter elements is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to chromatin during vegetative growth","termid":"FYPO:0003011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased protein localization to chromatin at promoter","synonyms":[{"name":"increased protein localisation to chromatin at promoter","type":"exact"},{"name":"increased protein localization to chromatin at promoter during mitotic cell cycle","type":"related"},{"name":"increased protein localization to chromatin at promoter during vegetative growth","type":"exact"}],"termid":"FYPO:0007506"}


id: GO:1903929
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a primary palate over time, from its formation to the mature structure.","definition_xrefs":["GOC:mgi_curators","PMID:24644145","GOC:TermGenie","PMID:25504820","GO_REF:0000094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"roof of mouth development","termid":"GO:0060021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"primary palate development","synonyms":[{"name":"palatum primarium development","type":"related"},{"name":"primary palate process development","type":"exact"},{"name":"primitive palate development","type":"related"},{"name":"processus palatinus medianus development","type":"related"}],"termid":"GO:1903929"}


id: PBO:0038480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily B member 5","termid":"PBO:0038480"}


id: GO:0009501
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A plastid whose main function is to synthesize and store starch.","definition_xrefs":["ISBN:0140514031"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"amyloplast","secondary_identifiers":["Wikipedia:Amyloplast"],"termid":"GO:0009501"}


id: PBO:0041395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 5 putative open reading frame 67","termid":"PBO:0041395"}


id: PBO:0000996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase Rbg1 (predicted)","termid":"PBO:0000996"}


id: PBO:0061144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NME/NM23 family member 7","termid":"PBO:0061144"}


id: SO:0000003
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"G-quartets are unusual nucleic acid structures consisting of a planar arrangement where each guanine is hydrogen bonded by hoogsteen pairing to another guanine in the quartet.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_secondary_structure","termid":"SO:0000002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G_quartet","secondary_identifiers":["http://en.wikipedia.org/wiki/G-quadruplex"],"synonyms":[{"name":"G quartet","type":"exact"},{"name":"G tetrad","type":"exact"},{"name":"G-quadruplex","type":"exact"},{"name":"G-quartet","type":"exact"},{"name":"G-tetrad","type":"exact"},{"name":"G_quadruplex","type":"exact"},{"name":"guanine tetrad","type":"exact"}],"termid":"SO:0000003"}


id: PBO:0038761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACTR3B pseudogene 6","termid":"PBO:0038761"}


id: PBO:0042033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 88B","termid":"PBO:0042033"}


id: PBO:0087464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of an alternative replication factor C complex; important for DNA replication and genome integrity; suppresses spontaneous DNA damage; involved in homologous recombination-mediated repair and telomere homeostasis; required for PCNA (Pol30p) unloading during DNA replication","termid":"PBO:0087464"}


id: SO:1001192
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is alternately spliced, and encodes more than one polypeptide, that do not have overlapping peptide sequences.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"encodes_greater_than_1_polypeptide","termid":"SO:1001189"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"encodes_disjoint_polypeptides","synonyms":[{"name":"encodes disjoint polypeptides","type":"exact"}],"termid":"SO:1001192"}


id: PBO:0059042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multimerin 1","termid":"PBO:0059042"}


id: PBO:0079745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urothelial cancer associated 1","termid":"PBO:0079745"}


id: PBO:0078175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta joining 1-6","termid":"PBO:0078175"}


id: PBO:0069244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 499, pseudogene","termid":"PBO:0069244"}


id: PBO:0056502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyl-CpG binding domain 4, DNA glycosylase","termid":"PBO:0056502"}


id: PBO:0062607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily R member 2","termid":"PBO:0062607"}


id: PBO:0055746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA regulator of hepatic lineages 1","termid":"PBO:0055746"}


id: GO:1904083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of epiboly.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:24892953"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of epiboly (obsolete GO:1904083)","synonyms":[{"name":"regulation of epiboly","type":"exact"}],"termid":"GO:1904083"}


id: GO:0019942
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to the target protein.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete NEDD8 class-dependent protein catabolic process (obsolete GO:0019942)","synonyms":[{"name":"NEDD8 class-dependent protein breakdown","type":"exact"},{"name":"NEDD8 class-dependent protein catabolic process","type":"exact"},{"name":"NEDD8 class-dependent protein catabolism","type":"exact"},{"name":"NEDD8 class-dependent protein degradation","type":"exact"},{"name":"RUB1-dependent protein catabolic process","type":"exact"},{"name":"RUB1-dependent protein catabolism","type":"exact"},{"name":"RUB1-dependent protein degradation","type":"exact"}],"termid":"GO:0019942"}


id: SO:0000929
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An mRNA that is edited.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"edited","termid":"SO:0000116"},{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"},{"relation_name":"is_a","term_name":"edited_transcript","termid":"SO:0000873"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"edited_mRNA","synonyms":[{"name":"edited mRNA","type":"exact"}],"termid":"SO:0000929"}


id: PBO:0079170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSPO associated protein 1","termid":"PBO:0079170"}


id: FYPO:0004428
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of mitotic cytokinesis is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0001320","FYPO:0000631","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased rate of cytokinesis","synonyms":[{"name":"increased rate of cytokinesis during mitotic cell cycle","type":"related"},{"name":"increased rate of cytokinesis during vegetative growth","type":"exact"},{"name":"increased rate of mitotic cytokinesis","type":"exact"}],"termid":"FYPO:0004428"}


id: PBO:0070237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 175 pseudogene","termid":"PBO:0070237"}


id: PBO:0081635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 563","termid":"PBO:0081635"}


id: GO:0034180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 13 signaling pathway.","definition_xrefs":["PMID:17328678","GOC:add","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 13 signaling pathway","termid":"GO:0034179"},{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039532"},{"relation_name":"negatively_regulates","term_name":"toll-like receptor 13 signaling pathway","termid":"GO:0034178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of toll-like receptor 13 signaling pathway","synonyms":[{"name":"negative regulation of TLR13 signaling pathway","type":"exact"},{"name":"negative regulation of toll-like receptor 13 signalling pathway","type":"exact"}],"termid":"GO:0034180"}


id: PBO:0111887
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"huamn GCFC2 ortholog","termid":"PBO:0111887"}


id: PBO:0079668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2V1 pseudogene 16","termid":"PBO:0079668"}


id: PBO:0084320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Karyopherin alpha homolog; forms a dimer with karyopherin beta Kap95p to mediate import of nuclear proteins, binds the nuclear localization signal of the substrate during import; involved in cotranslational protein degradation; binds ribosome-bound nascent polypeptides; Srp1p and Sts1p couple proteasomes to nascent polypeptides emerging from the ribosome for cotranslational degradation","termid":"PBO:0084320"}


id: PBO:0024810
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-causally_influenced_by","termid":"PBO:0024810"}


id: PBO:0052165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium inwardly rectifying channel subfamily J member 13","termid":"PBO:0052165"}


id: PBO:0077632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane O-mannosyltransferase targeting cadherins 4","termid":"PBO:0077632"}


id: GO:0043611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving isoprene, C5H8.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene metabolic process","termid":"GO:0042214"},{"relation_name":"is_a","term_name":"olefin metabolic process","termid":"GO:1900673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"isoprene metabolic process","synonyms":[{"name":"2-methyl-1,3-butadiene metabolic process","type":"exact"},{"name":"2-methyl-1,3-butadiene metabolism","type":"exact"},{"name":"hemiterpene metabolic process","type":"exact"},{"name":"hemiterpene metabolism","type":"exact"},{"name":"isoprene metabolism","type":"exact"}],"termid":"GO:0043611"}


id: PBO:0049245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GrpE like 2, mitochondrial","termid":"PBO:0049245"}


id: PATO:0002066
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A solid configuration inhering in a material entity by virtue of its constituent atoms, molecules, or ions being arranged in an orderly repeating pattern extending in all three spatial dimensions.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Crystal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solid configuration","termid":"PATO:0001736"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystal configuration","termid":"PATO:0002066"}


id: PBO:0004232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ClC chloride channel (predicted)","termid":"PBO:0004232"}


id: PBO:0064797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase methylesterase 1","termid":"PBO:0064797"}


id: PBO:0004565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"response regulator Mcs4","termid":"PBO:0004565"}


id: PBO:0080967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBTB7C antisense RNA 1","termid":"PBO:0080967"}


id: PBO:0001540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ino80 complex subunit Ies2","termid":"PBO:0001540"}


id: GO:0048366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phyllome development","termid":"GO:0048827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leaf development","termid":"GO:0048366"}


id: PBO:0005417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hsk1-Dfp1 kinase complex regulatory subunit Dfp1","termid":"PBO:0005417"}


id: PBO:0070185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 103 pseudogene","termid":"PBO:0070185"}


id: GO:0009173
data:
  {"annotated_genes":["SJAG_00964","SJAG_00694","SJAG_00444","SJAG_04354","SJAG_04709","SJAG_00533","SJAG_04713","SJAG_00197","SJAG_03708","SJAG_03164"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108065,112898,94573,85483,89451],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044205"},{"annotations":[67046],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009224"},{"annotations":[111075,84487,88997,87992,83503],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside monophosphate metabolic process","termid":"GO:0009129"},{"relation_name":"is_a","term_name":"ribonucleoside monophosphate metabolic process","termid":"GO:0009161"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00197":null,"SJAG_00444":null,"SJAG_00533":null,"SJAG_00694":null,"SJAG_00964":null,"SJAG_03164":null,"SJAG_03708":null,"SJAG_04354":null,"SJAG_04709":null,"SJAG_04713":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"pyrimidine ribonucleoside monophosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"pyrimidine ribonucleoside monophosphate metabolism","type":"exact"}],"termid":"GO:0009173","terms_by_termid":{"GO:0009224":null,"GO:0044205":null,"GO:0044206":null}}


id: PBO:0029765
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_double-strand_break_site","termid":"PBO:0029765"}


id: PBO:0086892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative transmembrane protein involved in the biotin biosynthesis; responsible for uptake of 7-keto 8-aminopelargonic acid; BIO5 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis","termid":"PBO:0086892"}


id: PBO:0047267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 246 member B","termid":"PBO:0047267"}


id: PBO:0110479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatic lncRNA metabolic regulator 1","termid":"PBO:0110479"}


id: SO:0000365
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region encoding an integrase which acts at a site adjacent to it (attI_site) to insert DNA which must include but is not limited to an attC_site.","definition_xrefs":["SO:as"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integrated_mobile_genetic_element","termid":"SO:0001039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integron","secondary_identifiers":["http://en.wikipedia.org/wiki/Integron"],"termid":"SO:0000365"}


id: GO:1904239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of VCP-NPL4-UFD1 AAA ATPase complex assembly.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"regulates","term_name":"VCP-NPL4-UFD1 AAA ATPase complex assembly","termid":"GO:1904210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly","synonyms":[{"name":"regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly","type":"narrow"},{"name":"regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation","type":"narrow"},{"name":"regulation of VCP-NPL4-UFD1 AAA ATPase complex formation","type":"exact"},{"name":"regulation of p97-Ufd1-Npl4 complex assembly","type":"exact"},{"name":"regulation of p97-Ufd1-Npl4 complex formation","type":"exact"}],"termid":"GO:1904239"}


id: PBO:0067660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 837, pseudogene","termid":"PBO:0067660"}


id: PBO:0052906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 12-3","termid":"PBO:0052906"}


id: FYPO:0006382
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cell wall organization is abnormal when the cell is subject to nitrogen starvation. Cell wall organization results in the assembly, arrangement of constituent parts, or disassembly of the fungal-type cell wall.","definition_xrefs":["GO:0031505","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell wall organization","termid":"FYPO:0004805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0004805"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0004805","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cell wall organization during nitrogen starvation","synonyms":[{"name":"abnormal cell wall organisation during nitrogen starvation","type":"exact"},{"name":"abnormal cell wall organization during nitrogen depletion","type":"exact"},{"name":"abnormal cell wall organization during nitrogen deprivation","type":"exact"},{"name":"abnormal fungal-type cell wall organization during nitrogen starvation","type":"exact"}],"termid":"FYPO:0006382"}


id: PBO:0068008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 310","termid":"PBO:0068008"}


id: PBO:0014268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human TMEM165 homolog, congenital disorders of glycosylation","termid":"PBO:0014268"}


id: PBO:0040515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA wax alcohol acyltransferase 2","termid":"PBO:0040515"}


id: GO:1903751
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to hydrogen peroxide.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:18681888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of hydrogen peroxide-mediated programmed cell death","termid":"GO:1901299"},{"relation_name":"is_a","term_name":"negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway","termid":"GO:1902176"},{"relation_name":"is_a","term_name":"regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","termid":"GO:1903750"},{"relation_name":"negatively_regulates","term_name":"intrinsic apoptotic signaling pathway in response to hydrogen peroxide","termid":"GO:0036481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","synonyms":[{"name":"down regulation of H2O2-induced intrinsic apoptotic signaling pathway","type":"related"},{"name":"down regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"down regulation of intrinsic apoptotic signaling pathway in response to H2O2","type":"exact"},{"name":"down regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","type":"exact"},{"name":"down-regulation of H2O2-induced intrinsic apoptotic signaling pathway","type":"related"},{"name":"down-regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"down-regulation of intrinsic apoptotic signaling pathway in response to H2O2","type":"exact"},{"name":"down-regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","type":"exact"},{"name":"downregulation of H2O2-induced intrinsic apoptotic signaling pathway","type":"related"},{"name":"downregulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"downregulation of intrinsic apoptotic signaling pathway in response to H2O2","type":"exact"},{"name":"downregulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","type":"exact"},{"name":"inhibition of H2O2-induced intrinsic apoptotic signaling pathway","type":"related"},{"name":"inhibition of hydrogen peroxide-induced intrinsic apoptotic signaling pathway","type":"narrow"},{"name":"inhibition of intrinsic apoptotic signaling pathway in response to H2O2","type":"narrow"},{"name":"inhibition of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","type":"narrow"},{"name":"negative regulation of H2O2-induced intrinsic apoptotic signaling pathway","type":"related"},{"name":"negative regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"negative regulation of intrinsic apoptotic signaling pathway in response to H2O2","type":"exact"}],"termid":"GO:1903751"}


id: PBO:0014585
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe DeUbiquitinating enzyme","termid":"PBO:0014585"}


id: GO:0106397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of R7 cell fate commitment.","definition_xrefs":["PMID:22878552","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell fate commitment","termid":"GO:0010455"},{"relation_name":"is_a","term_name":"regulation of R7 cell fate commitment","termid":"GO:0106396"},{"relation_name":"positively_regulates","term_name":"R7 cell fate commitment","termid":"GO:0007465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of R7 cell fate commitment","termid":"GO:0106397"}


id: PBO:0048860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOLGA2 pseudogene 5","termid":"PBO:0048860"}


id: GO:0009899
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ent-copalyl diphosphate = ent-kaur-16-ene + diphosphate.","definition_xrefs":["EC:4.2.3.19","RHEA:22220"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene synthase activity","termid":"GO:0010333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"ent-kaurene synthase activity","secondary_identifiers":["KEGG_REACTION:R05092","MetaCyc:4.2.3.19-RXN"],"synonyms":[{"name":"ent-copalyl-diphosphate diphosphate-lyase (cyclizing)","type":"related"},{"name":"ent-copalyl-diphosphate diphosphate-lyase (cyclizing, ent-kaurene-forming)","type":"related"},{"name":"ent-kaurene synthase B activity","type":"narrow"},{"name":"ent-kaurene synthetase B activity","type":"narrow"}],"termid":"GO:0009899"}


id: PBO:0067407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 517, pseudogene","termid":"PBO:0067407"}


id: PBO:0029981
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_mononucleate_monoseptate_vegetative_cell","termid":"PBO:0029981"}


id: PBO:0077314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM51 antisense RNA 1","termid":"PBO:0077314"}


id: GO:0048825
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling.","definition_xrefs":["GOC:tb","GOC:devbiol","PO:0020030"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryo development ending in seed dormancy","termid":"GO:0009793"},{"relation_name":"is_a","term_name":"leaf development","termid":"GO:0048366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cotyledon development","termid":"GO:0048825"}


id: PBO:0049436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 13","termid":"PBO:0049436"}


id: PBO:0029520
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony,_swollen_septated_spheroid_cells_(obsolete_FYPO:0002194)","termid":"PBO:0029520"}


id: PBO:0038794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 1A (pseudogene)","termid":"PBO:0038794"}


id: MOD:01265
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["Unimod:270#P","PubMed:15549660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleophilic addtion to cytopiloyne","termid":"MOD:00590"},{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophilic addtion to cytopiloyne - site P","synonyms":[{"name":"Cytopiloyne","type":"related"},{"name":"nucleophilic addtion to cytopiloyne","type":"related"}],"termid":"MOD:01265"}


id: PR:P87050
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cdr2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitosis inducer protein kinase cdr2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC57A10.02","synonyms":[{"name":"Spom972h-cdr2","type":"exact"}],"termid":"PR:P87050"}


id: PBO:0057843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3156-3","termid":"PBO:0057843"}


id: GO:0048447
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the sepal are generated and organized.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"floral organ morphogenesis","termid":"GO:0048444"},{"relation_name":"part_of","term_name":"sepal development","termid":"GO:0048442"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sepal morphogenesis","secondary_identifiers":["GO:0048422"],"termid":"GO:0048447"}


id: MOD:01758
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a threonine residue with the Proteome Sciences TMT6plex-130 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent O-acylated residue","termid":"MOD:01719"},{"relation_name":"is_a","term_name":"TMT6plex-130 reporter+balance reagent acylated residue","termid":"MOD:01752"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-130 reporter+balance reagent O3-acylated threonine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01758"}


id: PBO:0041485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 98","termid":"PBO:0041485"}


id: GO:0043000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein from the Golgi to the plasma membrane.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete Golgi to plasma membrane CFTR protein transport (obsolete GO:0043000)","synonyms":[{"name":"Golgi to plasma membrane cystic fibrosis transmembrane conductance regulator protein transport","type":"exact"}],"termid":"GO:0043000"}


id: GO:0009453
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.","definition_xrefs":["PMID:11029423","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"taxis","termid":"GO:0042330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"energy taxis","synonyms":[{"name":"energytaxis","type":"exact"},{"name":"taxis in response to energy source","type":"exact"}],"termid":"GO:0009453"}


id: PBO:0067914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 216","termid":"PBO:0067914"}


id: GO:0003329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of a cell to a pancreatic PP cell fate and its capacity to differentiate into a pancreatic PP cell. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell fate commitment","termid":"GO:0072148"},{"relation_name":"part_of","term_name":"pancreatic PP cell differentiation","termid":"GO:0003312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreatic PP cell fate commitment","termid":"GO:0003329"}


id: GO:1904594
data:
  {"annotated_genes":["SJAG_03126"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904595"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of termination of RNA polymerase II transcription.","definition_xrefs":["GOC:TermGenie","PMID:25417108","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of termination of DNA-templated transcription","termid":"GO:0031554"},{"relation_name":"regulates","term_name":"termination of RNA polymerase II transcription","termid":"GO:0006369"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03126":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of termination of RNA polymerase II transcription","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of RNA 3'-end formation by RNA polymerase II","type":"exact"},{"name":"regulation of RNA polymerase II transcription termination","type":"exact"},{"name":"regulation of RNA polymerase II transcription termination factor activity","type":"related"},{"name":"regulation of transcription termination from Pol II promoter","type":"exact"},{"name":"regulation of transcription termination from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1904594","terms_by_termid":{"GO:1904595":null}}


id: GO:0070054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Splicing of mRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons.","definition_xrefs":["GOC:krc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA splicing, via endonucleolytic cleavage and ligation","termid":"GO:0000394"},{"relation_name":"is_a","term_name":"mRNA processing","termid":"GO:0006397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0016071"],"is_obsolete":false,"name":"mRNA splicing, via endonucleolytic cleavage and ligation","secondary_identifiers":["GO:0061012"],"synonyms":[{"name":"cytosolic mRNA splicing","type":"related"}],"termid":"GO:0070054"}


id: PR:O14301
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A WD repeat-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00809","PRO:DNx","PANTHER:PTHR19856:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized WD repeat-containing protein C9G1.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9G1.05","secondary_identifiers":["UniProtKB:O14301"],"synonyms":[{"name":"Spom972h-WDR1","type":"exact"}],"termid":"PR:O14301"}


id: PBO:0051730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 3","termid":"PBO:0051730"}


id: GO:0030290
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any of a group of peptide cofactors of enzymes for the lysosomal degradation of sphingolipids. They stimulate various enzymes, including glucosylceramidase, galactosylceramidase, cerebroside-sulfatase, alpha-galactosidase, beta-galactosidase, and sphingomyelin phosphodiesterase.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0140677","GO:0003674","GO:0030234"],"is_obsolete":false,"name":"sphingolipid activator protein activity","secondary_identifiers":["Reactome:R-HSA-1605717","Reactome:R-HSA-9840470"],"synonyms":[{"name":"saposin","type":"narrow"}],"termid":"GO:0030290"}


id: GO:1902949
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tau-protein kinase activity.","definition_xrefs":["PMID:15897157","GOC:TermGenie","PMID:22986780","GOC:sjp","GO_REF:0000059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein kinase activity","termid":"GO:0045860"},{"relation_name":"is_a","term_name":"regulation of tau-protein kinase activity","termid":"GO:1902947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of tau-protein kinase activity","synonyms":[{"name":"activation of CDK5/p23","type":"related"},{"name":"activation of GSK","type":"related"},{"name":"activation of STK31","type":"related"},{"name":"activation of TPK","type":"related"},{"name":"activation of TPK I","type":"related"},{"name":"activation of TPK II","type":"related"},{"name":"activation of TTK","type":"related"},{"name":"activation of [Tau protein] kinase activity","type":"narrow"},{"name":"activation of brain protein kinase PK40erk activity","type":"narrow"},{"name":"activation of cdk5/p20","type":"related"},{"name":"activation of glycogen synthase kinase-3beta activity","type":"narrow"},{"name":"activation of protein tau kinase activity","type":"narrow"},{"name":"activation of tau kinase activity","type":"narrow"},{"name":"activation of tau protein kinase activity","type":"narrow"},{"name":"activation of tau-protein kinase I activity","type":"narrow"},{"name":"activation of tau-protein kinase II activity","type":"narrow"},{"name":"activation of tau-protein kinase activity","type":"narrow"},{"name":"activation of tau-tubulin kinase activity","type":"narrow"},{"name":"positive regulation of CDK5/p23","type":"related"},{"name":"positive regulation of GSK","type":"related"},{"name":"positive regulation of STK31","type":"related"},{"name":"positive regulation of TPK","type":"related"},{"name":"positive regulation of TPK I","type":"related"},{"name":"positive regulation of TPK II","type":"related"},{"name":"positive regulation of TTK","type":"related"},{"name":"positive regulation of [Tau protein] kinase activity","type":"exact"},{"name":"positive regulation of brain protein kinase PK40erk activity","type":"narrow"},{"name":"positive regulation of cdk5/p20","type":"related"},{"name":"positive regulation of glycogen synthase kinase-3beta activity","type":"exact"},{"name":"positive regulation of protein tau kinase activity","type":"exact"},{"name":"positive regulation of tau kinase activity","type":"exact"},{"name":"positive regulation of tau protein kinase activity","type":"exact"},{"name":"positive regulation of tau-protein kinase I activity","type":"narrow"},{"name":"positive regulation of tau-protein kinase II activity","type":"narrow"},{"name":"positive regulation of tau-tubulin kinase activity","type":"narrow"},{"name":"up regulation of CDK5/p23","type":"related"},{"name":"up regulation of GSK","type":"related"},{"name":"up regulation of STK31","type":"related"},{"name":"up regulation of TPK","type":"related"},{"name":"up regulation of TPK I","type":"related"},{"name":"up regulation of TPK II","type":"related"},{"name":"up regulation of TTK","type":"related"},{"name":"up regulation of [Tau protein] kinase activity","type":"exact"},{"name":"up regulation of brain protein kinase PK40erk activity","type":"narrow"},{"name":"up regulation of cdk5/p20","type":"related"},{"name":"up regulation of glycogen synthase kinase-3beta activity","type":"exact"},{"name":"up regulation of protein tau kinase activity","type":"exact"},{"name":"up regulation of tau kinase activity","type":"exact"},{"name":"up regulation of tau protein kinase activity","type":"exact"},{"name":"up regulation of tau-protein kinase I activity","type":"narrow"},{"name":"up regulation of tau-protein kinase II activity","type":"narrow"},{"name":"up regulation of tau-protein kinase activity","type":"exact"},{"name":"up regulation of tau-tubulin kinase activity","type":"narrow"},{"name":"up-regulation of CDK5/p23","type":"related"},{"name":"up-regulation of GSK","type":"related"},{"name":"up-regulation of STK31","type":"related"},{"name":"up-regulation of TPK","type":"related"},{"name":"up-regulation of TPK I","type":"related"},{"name":"up-regulation of TPK II","type":"related"},{"name":"up-regulation of TTK","type":"related"},{"name":"up-regulation of [Tau protein] kinase activity","type":"exact"},{"name":"up-regulation of brain protein kinase PK40erk activity","type":"narrow"},{"name":"up-regulation of cdk5/p20","type":"related"},{"name":"up-regulation of glycogen synthase kinase-3beta activity","type":"exact"},{"name":"up-regulation of protein tau kinase activity","type":"exact"},{"name":"up-regulation of tau kinase activity","type":"exact"},{"name":"up-regulation of tau protein kinase activity","type":"exact"},{"name":"up-regulation of tau-protein kinase I activity","type":"narrow"},{"name":"up-regulation of tau-protein kinase II activity","type":"narrow"},{"name":"up-regulation of tau-protein kinase activity","type":"exact"},{"name":"up-regulation of tau-tubulin kinase activity","type":"narrow"},{"name":"upregulation of CDK5/p23","type":"related"},{"name":"upregulation of GSK","type":"related"},{"name":"upregulation of STK31","type":"related"},{"name":"upregulation of TPK","type":"related"},{"name":"upregulation of TPK I","type":"related"},{"name":"upregulation of TPK II","type":"related"},{"name":"upregulation of TTK","type":"related"},{"name":"upregulation of [Tau protein] kinase activity","type":"exact"},{"name":"upregulation of brain protein kinase PK40erk activity","type":"narrow"},{"name":"upregulation of cdk5/p20","type":"related"},{"name":"upregulation of glycogen synthase kinase-3beta activity","type":"exact"},{"name":"upregulation of protein tau kinase activity","type":"exact"},{"name":"upregulation of tau kinase activity","type":"exact"},{"name":"upregulation of tau protein kinase activity","type":"exact"},{"name":"upregulation of tau-protein kinase I activity","type":"narrow"},{"name":"upregulation of tau-protein kinase II activity","type":"narrow"},{"name":"upregulation of tau-protein kinase activity","type":"exact"},{"name":"upregulation of tau-tubulin kinase activity","type":"narrow"}],"termid":"GO:1902949"}


id: PBO:0077550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 258","termid":"PBO:0077550"}


id: GO:0044399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which planktonically growing microorganisms of different species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription.","definition_xrefs":["GOC:cc","GOC:di","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biofilm formation","termid":"GO:0042710"},{"relation_name":"is_a","term_name":"biological process involved in symbiotic interaction","termid":"GO:0044403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multi-species biofilm formation","secondary_identifiers":["GO:0044401","GO:0090608","GO:0044400","GO:0090607"],"synonyms":[{"name":"multi-species biofilm formation in or on host organism","type":"narrow"},{"name":"multi-species biofilm formation on inanimate substrate","type":"narrow"},{"name":"multi-species submerged biofilm formation","type":"narrow"},{"name":"multi-species surface biofilm formation","type":"related"}],"termid":"GO:0044399"}


id: PBO:0046284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EML2 antisense RNA 1","termid":"PBO:0046284"}


id: FYPO:0006074
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 occurs to a greater extent than normal at ribosomal DNA.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000873"},{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation at rDNA during vegetative growth","termid":"FYPO:0006077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at rDNA during vegetative growth","synonyms":[{"name":"increased histone H3 K9 dimethylation at rDNA during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at rDNA during mitotic cell cycle","type":"related"},{"name":"increased histone H3-K9 dimethylation at ribosomal DNA during vegetative growth","type":"exact"},{"name":"increased histone H3K9 dimethylation at rDNA during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at rDNA during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at rDNA during vegetative growth","type":"exact"}],"termid":"FYPO:0006074"}


id: GO:0072735
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tert-butyl hydroperoxide (t-BOOH) stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to alkyl hydroperoxide","termid":"GO:0033195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to tert-butyl hydroperoxide","synonyms":[{"name":"response to 2-methyl-prop-2-yl-hydroperoxide","type":"exact"},{"name":"response to t-BOOH","type":"exact"}],"termid":"GO:0072735"}


id: PBO:0113218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Moonlighting protein component of both the ERMES and SAM complex; subunit of the ERMES complex that acts as a molecular tether between the mitochondria and the ER, necessary for both efficient phospholipid exchange between organelles and for mitophagy; SAM/TOB complex subunit that functions in the assembly of outer membrane beta-barrel proteins; involved in mitochondrial inheritance and morphology; ERMES complex often co-localizes with peroxisomes adjacent to mitochondria-ER junctions","termid":"PBO:0113218"}


id: PBO:0087227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Secreted alpha-galactosidase; required for catabolic conversion of melibiose to glucose and galactose","termid":"PBO:0087227"}


id: PBO:0081198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger imprinted 3","termid":"PBO:0081198"}


id: PBO:0036006
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_acetylation_at_subtelomere_during_vegetative_growth","termid":"PBO:0036006"}


id: PBO:0049580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3.4 histone, cluster member","termid":"PBO:0049580"}


id: GO:0051338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catalytic activity","termid":"GO:0050790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of transferase activity","synonyms":[{"name":"transferase regulator","type":"exact"}],"termid":"GO:0051338"}


id: PR:000027572
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fungal histone H3.2 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PMID:11242054","PomBase:MAH","PMID:20929775"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fungal histone H3.2","termid":"PR:000027571"},{"relation_name":"is_a","term_name":"core histone (Schizosaccharomyces pombe)","termid":"PR:000041293"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3.2 (Schizosaccharomyces pombe)","pombase_gene_id":"SPBC8D2.04","synonyms":[{"name":"SPBC8D2.04, PI060","type":"related"},{"name":"Spom-hht2","type":"exact"}],"termid":"PR:000027572"}


id: PBO:0042628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 3 pseudogene","termid":"PBO:0042628"}


id: PBO:0081240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF8 divergent transcript","termid":"PBO:0081240"}


id: GO:0046061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine deoxyribonucleotide catabolic process","termid":"GO:0009155"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside triphosphate catabolic process","termid":"GO:0009217"},{"relation_name":"is_a","term_name":"dATP metabolic process","termid":"GO:0046060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"dATP catabolic process","synonyms":[{"name":"dATP breakdown","type":"exact"},{"name":"dATP catabolism","type":"exact"},{"name":"dATP degradation","type":"exact"}],"termid":"GO:0046061"}


id: GO:0009629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to abiotic stimulus","termid":"GO:0009628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to gravity","synonyms":[{"name":"response to gravitational stimulus","type":"exact"}],"termid":"GO:0009629"}


id: GO:0042243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an asexual spore wall, the specialized envelope lying outside the cell membrane of a spore derived from an asexual process. Examples of this process are found in Bacterial and Fungal species.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"spore wall assembly","termid":"GO:0042244"},{"relation_name":"part_of","term_name":"asexual sporulation","termid":"GO:0030436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0044085","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"asexual spore wall assembly","synonyms":[{"name":"asexual spore wall formation","type":"exact"}],"termid":"GO:0042243"}


id: PBO:0030450
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_lysine_and_cysteine","termid":"PBO:0030450"}


id: GO:0042481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the formation and development of a tooth or teeth.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of animal organ morphogenesis","termid":"GO:2000027"},{"relation_name":"regulates","term_name":"odontogenesis","termid":"GO:0042476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of odontogenesis","secondary_identifiers":["GO:0042484"],"synonyms":[{"name":"regulation of odontogenesis of calcareous or chitinous tooth","type":"narrow"},{"name":"regulation of tooth development","type":"exact"}],"termid":"GO:0042481"}


id: GO:0051769
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macromolecule biosynthetic process","termid":"GO:0010556"},{"relation_name":"regulates","term_name":"nitric-oxide synthase biosynthetic process","termid":"GO:0051767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of nitric-oxide synthase biosynthetic process","secondary_identifiers":["GO:0051772"],"synonyms":[{"name":"regulation of NOS biosynthetic process","type":"exact"},{"name":"regulation of NOS2 synthase biosynthesis","type":"narrow"},{"name":"regulation of NO synthase biosynthesis","type":"exact"},{"name":"regulation of NO synthase biosynthetic process","type":"exact"},{"name":"regulation of NOS biosynthesis","type":"exact"},{"name":"regulation of NOS2 synthase biosynthetic process","type":"narrow"},{"name":"regulation of nitric-oxide synthase (type 2) biosynthesis","type":"narrow"},{"name":"regulation of nitric-oxide synthase (type 2) biosynthetic process","type":"narrow"},{"name":"regulation of nitric-oxide synthase (type II) biosynthesis","type":"narrow"},{"name":"regulation of nitric-oxide synthase (type II) biosynthetic process","type":"narrow"},{"name":"regulation of nitric-oxide synthase 2 biosynthetic process","type":"narrow"}],"termid":"GO:0051769"}


id: GO:1900529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of cell shape that is involved in cellular response to glucose starvation.","definition_xrefs":["PMID:9135147","GOC:TermGenie","GOC:al"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cell shape involved in cellular response to glucose starvation (obsolete GO:1900529)","synonyms":[{"name":"regulation of cell shape involved in cellular response to glucose starvation","type":"exact"}],"termid":"GO:1900529"}


id: PBO:0004239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lid2 complex subunit, predicted histone demethylase Lid2","termid":"PBO:0004239"}


id: GO:0003194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of the sinoatrial valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart valve formation","termid":"GO:0003188"},{"relation_name":"part_of","term_name":"sinoatrial valve morphogenesis","termid":"GO:0003185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sinoatrial valve formation","synonyms":[{"name":"SA valve formation","type":"exact"}],"termid":"GO:0003194"}


id: PBO:0110204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial single stranded DNA specific 5'-3' exodeoxyribonuclease Exo5.2","termid":"PBO:0110204"}


id: PBO:0039357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenin X-linked","termid":"PBO:0039357"}


id: PBO:0049569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B histone pseudogene 6","termid":"PBO:0049569"}


id: GO:0042394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The shedding of the old protein-based cuticular fragments during the molting cycle. Examples of this process are found in invertebrates.","definition_xrefs":["GOC:jl","GOC:mtg_sensu"],"gene_count":0,"genotype_count":0,"name":"obsolete ecdysis, protein-based cuticle (obsolete GO:0042394)","synonyms":[{"name":"ecdysis, protein-based cuticle","type":"exact"}],"termid":"GO:0042394"}


id: GO:0097162
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a MADS box domain, a protein domain that encodes the DNA-binding MADS domain. The MADS domain binds to DNA sequences of high similarity to the motif CC[A/T]6GG termed the CArG-box. MADS-domain proteins are generally transcription factors. The length of the MADS-box is in the range of 168 to 180 base pairs.","definition_xrefs":["GOC:yaf","InterPro:IPR002100","Wikipedia:MADS-box","PMID:18296735"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"MADS box domain binding","termid":"GO:0097162"}


id: GO:0060782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation that contributes to the progression of the prostate gland over time. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets.","definition_xrefs":["GOC:dph","PMID:12221011"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesenchymal cell proliferation","termid":"GO:0010464"},{"relation_name":"regulates","term_name":"mesenchymal cell proliferation involved in prostate gland development","termid":"GO:0060781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesenchymal cell proliferation involved in prostate gland development","termid":"GO:0060782"}


id: GO:1903931
data:
  {"annotated_genes":["SJAG_04712"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84491],"is_not":false,"summary":null,"term":"GO:1903931"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of pyrimidine-containing compound salvage.","definition_xrefs":["PMID:23695302","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"positive regulation of nucleobase-containing compound metabolic process","termid":"GO:0045935"},{"relation_name":"is_a","term_name":"regulation of pyrimidine-containing compound salvage","termid":"GO:1903930"},{"relation_name":"positively_regulates","term_name":"pyrimidine-containing compound salvage","termid":"GO:0008655"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04712":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of pyrimidine-containing compound salvage","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of pyrimidine salvage","type":"related"},{"name":"activation of pyrimidine-containing compound salvage","type":"narrow"},{"name":"positive regulation of pyrimidine salvage","type":"related"},{"name":"up regulation of pyrimidine salvage","type":"related"},{"name":"up regulation of pyrimidine-containing compound salvage","type":"exact"},{"name":"up-regulation of pyrimidine salvage","type":"related"},{"name":"up-regulation of pyrimidine-containing compound salvage","type":"exact"},{"name":"upregulation of pyrimidine salvage","type":"related"},{"name":"upregulation of pyrimidine-containing compound salvage","type":"exact"}],"termid":"GO:1903931","terms_by_termid":{"GO:1903931":null}}


id: GO:0031897
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The translocon of the inner envelope of chloroplasts, which facilitates the import of proteins across the chloroplast inner membrane.","definition_xrefs":["PMID:12393016","PMID:12180471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"chloroplast inner membrane","termid":"GO:0009706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"Tic complex","synonyms":[{"name":"chloroplast inner membrane translocase complex","type":"exact"}],"termid":"GO:0031897"}


id: PBO:0071416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 22","termid":"PBO:0071416"}


id: PBO:0072918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scavenger receptor class F member 1","termid":"PBO:0072918"}


id: PBO:0080634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 82 pseudogene 2","termid":"PBO:0080634"}


id: GO:1902988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a neurofibrillary tangle.","definition_xrefs":["GOC:TermGenie","GOC:sjp","PMID:24154541","GO_REF:0000079","PMID:22986780","PMID:15897157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inclusion body assembly","termid":"GO:0070841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"neurofibrillary tangle assembly","synonyms":[{"name":"flame-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"flame-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"neurofibrillary tangle formation","type":"exact"},{"name":"star-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"star-shaped neurofibrillary tangle formation","type":"narrow"}],"termid":"GO:1902988"}


id: PBO:0045472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DRG1 pseudogene 1","termid":"PBO:0045472"}


id: SO:0000017
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence element characteristic of the promoters of snRNA genes transcribed by RNA polymerase II or by RNA polymerase III. Located between -45 and -60 relative to the TSS. The human PSE_motif consensus sequence is TCACCNTNA(C|G)TNAAAAG(T|G). The basal transcription factor, snRNA-activating protein complex (SNAPc), binds the PSE_motif and is required for the transcription of both RNA polymerase II and III transcribed small-nuclear RNA genes.","definition_xrefs":["PMID:23166507","PMID:11390411","PMID:12651739","PMID:12621023","PMID:8339931"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"},{"relation_name":"part_of","term_name":"promoter","termid":"SO:0000167"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PSE_motif","synonyms":[{"name":"PSE motif","type":"exact"},{"name":"proximal sequence element","type":"exact"}],"termid":"SO:0000017"}


id: PBO:0057337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 523","termid":"PBO:0057337"}


id: GO:0015643
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a toxic substance, a poisonous substance that causes damage to biological systems.","definition_xrefs":["GOC:jl","GOC:pr","GOC:curators","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"toxic substance binding","synonyms":[{"name":"antitoxin activity","type":"related"},{"name":"lipoprotein antitoxin","type":"related"}],"termid":"GO:0015643"}


id: PBO:0002540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-C2H2 type zinc finger protein/UBA domain protein","termid":"PBO:0002540"}


id: GO:1901016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of potassium ion transmembrane transporter activity.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of monoatomic ion transmembrane transporter activity","termid":"GO:0032412"},{"relation_name":"is_a","term_name":"regulation of potassium ion transmembrane transport","termid":"GO:1901379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"regulation of potassium ion transmembrane transporter activity","synonyms":[{"name":"regulation of potassium transporter activity","type":"exact"}],"termid":"GO:1901016"}


id: MOD:01491
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a threonine residue with the Applied Biosystems iTRAQ4plex-114 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ4plex-114 reporter+balance reagent acylated residue","termid":"MOD:01485"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent O-acylated residue","termid":"MOD:01713"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ4plex-114 reporter+balance reagent O3-acylated threonine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"iTRAQ4plex114","type":"related"}],"termid":"MOD:01491"}


id: PBO:0082009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger SWIM-type containing 7","termid":"PBO:0082009"}


id: PBO:0053077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LBX2 antisense RNA 1","termid":"PBO:0053077"}


id: PBO:0066412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RELT TNF receptor","termid":"PBO:0066412"}


id: PBO:0018044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TREX complex subunit Tho1 (predicted)","termid":"PBO:0018044"}


id: FYPO:0005650
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which premeiotic DNA replication begins at the normal (i.e. indistinguishable from wild type) time relative to other cell cycle events.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal premeiotic DNA replication","termid":"FYPO:0002043"},{"relation_name":"is_a","term_name":"normal cellular process during meiotic cell cycle","termid":"FYPO:0007277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal onset of premeiotic DNA replication","synonyms":[{"name":"normal timing of premeiotic DNA replication","type":"related"}],"termid":"FYPO:0005650"}


id: GO:0016123
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of xanthophylls, oxygen-containing carotenoids.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carotenoid biosynthetic process","termid":"GO:0016117"},{"relation_name":"is_a","term_name":"xanthophyll metabolic process","termid":"GO:0016122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"xanthophyll biosynthetic process","synonyms":[{"name":"xanthophyll anabolism","type":"exact"},{"name":"xanthophyll biosynthesis","type":"exact"},{"name":"xanthophyll formation","type":"exact"},{"name":"xanthophyll synthesis","type":"exact"}],"termid":"GO:0016123"}


id: PBO:0076192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO2 pseudogene 1","termid":"PBO:0076192"}


id: PBO:0069893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1183, pseudogene","termid":"PBO:0069893"}


id: MOD:00377
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-histidine residue and 5'-phosphouridine through a phosphoramide ester bond to form 1'-(phospho-5'-uridine)-L-histidine.","definition_xrefs":["PubMed:11467524","Unimod:417#H","PubMed:380639","PubMed:8794735","PubMed:321007","RESID:AA0372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"uridylated residue","termid":"MOD:01166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1'-(phospho-5'-uridine)-L-histidine","synonyms":[{"name":"(S)-2-amino-3-[1-(5'-uridine phosphono)imidazol-4-yl]propanoic acid","type":"exact"},{"name":"1'-(phospho-5'-uridine)-L-histidine","type":"exact"},{"name":"ACT_SITE Tele-UMP-histidine intermediate","type":"exact"},{"name":"L-histidine 5'-uridine phosphoramidester","type":"exact"},{"name":"L-histidine monoanhydride with 5'-uridylic acid","type":"exact"},{"name":"MOD_RES O-UMP-histidine","type":"exact"},{"name":"N(tau)-5'-uridylic-L-histidine","type":"exact"},{"name":"N1'-uridylylated histidine","type":"exact"},{"name":"PhosphoUridine","type":"related"},{"name":"tele-5'-uridylic-L-histidine","type":"exact"},{"name":"uridine phosphodiester","type":"related"}],"termid":"MOD:00377"}


id: GO:2000186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of phosphate transmembrane transport.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of inorganic anion transmembrane transport","termid":"GO:1903796"},{"relation_name":"is_a","term_name":"regulation of phosphate transmembrane transport","termid":"GO:2000185"},{"relation_name":"negatively_regulates","term_name":"phosphate ion transmembrane transport","termid":"GO:0035435"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"negative regulation of phosphate transmembrane transport","synonyms":[{"name":"negative regulation of phosphate membrane transport","type":"exact"}],"termid":"GO:2000186"}


id: PBO:0011518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial trancriptional repressor protein BolA domain (predicted)","termid":"PBO:0011518"}


id: GO:0018282
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a cluster of several metal atoms, including iron, nickel, molybdenum, vanadium, or copper, with one or more bridging (mu-bond) sulfur atoms; amino acids residues in proteins that may ligate the metal sulfur cluster are cysteine, histidine, aspartate, glutamate, serine and cysteine persulfide.","definition_xrefs":["GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"},{"relation_name":"part_of","term_name":"metallo-sulfur cluster assembly","termid":"GO:0031163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"metal incorporation into metallo-sulfur cluster","synonyms":[{"name":"metal incorporation into metallo-sulphur cluster","type":"exact"}],"termid":"GO:0018282"}


id: GO:0052048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An interaction with the host organism mediated by a substance secreted by the other (symbiont) organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete interaction with host via secreted substance (obsolete GO:0052048)","synonyms":[{"name":"interaction with host via secreted substance during symbiotic interaction","type":"related"},{"name":"interaction with host via secreted substance involved in symbiotic interaction","type":"related"}],"termid":"GO:0052048"}


id: GO:0004897
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with ciliary neurotrophic factor (CNTF) and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"ciliary neurotrophic factor receptor activity","synonyms":[{"name":"CNTF receptor activity","type":"exact"},{"name":"gp130","type":"related"}],"termid":"GO:0004897"}


id: PBO:0055993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"limbic system associated membrane protein","termid":"PBO:0055993"}


id: PBO:0012534
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-results_in_morphogenesis_of","termid":"PBO:0012534"}


id: GO:0043613
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of isoprene, C5H8.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprene metabolic process","termid":"GO:0043611"},{"relation_name":"is_a","term_name":"terpene catabolic process","termid":"GO:0046247"},{"relation_name":"is_a","term_name":"olefinic compound catabolic process","termid":"GO:0120256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006629","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"isoprene catabolic process","synonyms":[{"name":"2-methyl-1,3-butadiene catabolic process","type":"exact"},{"name":"2-methyl-1,3-butadiene catabolism","type":"exact"},{"name":"hemiterpene catabolic process","type":"exact"},{"name":"hemiterpene catabolism","type":"exact"}],"termid":"GO:0043613"}


id: PBO:0076219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfite oxidase","termid":"PBO:0076219"}


id: PBO:0081860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 792","termid":"PBO:0081860"}


id: PBO:0071355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 14","termid":"PBO:0071355"}


id: PBO:0031802
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-premature_mitotic_G1/S_phase_transition","termid":"PBO:0031802"}


id: PBO:0065082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primase and DNA directed polymerase","termid":"PBO:0065082"}


id: PBO:0081128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFHX4 antisense RNA 1","termid":"PBO:0081128"}


id: SO:0001072
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Polypeptide region that is localized outside of a lipid bilayer.","definition_xrefs":["SO:cb","EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_structural_region","termid":"SO:0001070"},{"relation_name":"part_of","term_name":"membrane_structure","termid":"SO:0001071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"extramembrane_polypeptide_region","secondary_identifiers":["BS:00154"],"synonyms":[{"name":"extramembrane","type":"related"},{"name":"extramembrane polypeptide region","type":"exact"},{"name":"extramembrane_region","type":"related"},{"name":"topo_dom","type":"related"}],"termid":"SO:0001072"}


id: SO:0001628
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant located in the intergenic region, between genes.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_variant","termid":"SO:0001878"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intergenic_variant","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html","http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp","http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"ANNOVAR:intergenic","type":"related"},{"name":"Jannovar:intergenic_variant","type":"exact"},{"name":"Seattleseq:intergenic","type":"exact"},{"name":"VEP:intergenic_variant","type":"exact"},{"name":"intergenic","type":"exact"},{"name":"intergenic variant","type":"exact"},{"name":"snpEff:INTERGENIC","type":"exact"}],"termid":"SO:0001628"}


id: PBO:0086875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative sulfate permease; physically interacts with Hsp82p; green fluorescent protein (GFP)-fusion protein localizes to the ER; YPR003C is not an essential gene","termid":"PBO:0086875"}


id: PBO:0079518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymidylate synthetase pseudogene 2","termid":"PBO:0079518"}


id: PBO:0041695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium homeostasis modulator 1","termid":"PBO:0041695"}


id: PBO:0001131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Lysine","termid":"PBO:0001131"}


id: PBO:0076087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STT3 oligosaccharyltransferase complex catalytic subunit A","termid":"PBO:0076087"}


id: GO:0002097
data:
  {"annotated_genes":["SJAG_03896","SJAG_01024","SJAG_03677","SJAG_03932","SJAG_05023","SJAG_05249","SJAG_00358","SJAG_04113","SJAG_04756","SJAG_03616","SJAG_04704","SJAG_04175","SJAG_01302","SJAG_00352","SJAG_04367","SJAG_00235","SJAG_04189","SJAG_04452","SJAG_00186","SJAG_02302","SJAG_00579","SJAG_04380","SJAG_01418","SJAG_02099"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90306,113137],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990799"},{"annotations":[88825,104608],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070899"},{"annotations":[97195,100065,100352],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002100"},{"annotations":[114953,110134,96656,106293,91514,105622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002926"},{"annotations":[84299,89968],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002127"},{"annotations":[103001,92043,104543,101975,113374],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002143"},{"annotations":[92111,83827,114821,101676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002098"}]},"cv_name":"biological_process","definition":"The process in which the nucleotide at position 34 in the anticodon of a tRNA is post-transcriptionally modified.","definition_xrefs":["ISBN:155581073X","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00186":null,"SJAG_00235":null,"SJAG_00352":null,"SJAG_00358":null,"SJAG_00579":null,"SJAG_01024":null,"SJAG_01302":null,"SJAG_01418":null,"SJAG_02099":null,"SJAG_02302":null,"SJAG_03616":null,"SJAG_03677":null,"SJAG_03896":null,"SJAG_03932":null,"SJAG_04113":null,"SJAG_04175":null,"SJAG_04189":null,"SJAG_04367":null,"SJAG_04380":null,"SJAG_04452":null,"SJAG_04704":null,"SJAG_04756":null,"SJAG_05023":null,"SJAG_05249":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006399","GO:0010467"],"is_obsolete":false,"name":"tRNA wobble base modification","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0002097","terms_by_termid":{"GO:0002098":null,"GO:0002100":null,"GO:0002127":null,"GO:0002143":null,"GO:0002926":null,"GO:0070899":null,"GO:1990799":null}}


id: PBO:0026870
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K4_methylation_at_mating_type_locus","termid":"PBO:0026870"}


id: SO:1000080
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000080 sequence_variant_increasing_rate_of_transcription (obsolete SO:1000080)","synonyms":[{"name":"mutation increasing rate of transcription","type":"related"},{"name":"sequence variation increasing rate of transcription","type":"exact"}],"termid":"SO:1000080"}


id: GO:0052439
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the deposition of callose by the symbiont in its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of defense-related symbiont cell wall callose deposition (obsolete GO:0052439)","synonyms":[{"name":"modulation by organism of defense-related symbiont cell wall callose deposition","type":"exact"}],"termid":"GO:0052439"}


id: PBO:0047176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 197 Y-linked member 9","termid":"PBO:0047176"}


id: GO:0034346
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of type III interferon production. Interferon lambda is the only member of the type III interferon found so far.","definition_xrefs":["PMID:16734557","ISBN:0126896631","GOC:add","PMID:15546383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of type III interferon production","termid":"GO:0034344"},{"relation_name":"positively_regulates","term_name":"type III interferon production","termid":"GO:0034343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of type III interferon production","synonyms":[{"name":"activation of type III interferon production","type":"narrow"},{"name":"positive regulation of type III IFN production","type":"exact"},{"name":"stimulation of type III interferon production","type":"narrow"},{"name":"up regulation of type III interferon production","type":"exact"},{"name":"up-regulation of type III interferon production","type":"exact"},{"name":"upregulation of type III interferon production","type":"exact"}],"termid":"GO:0034346"}


id: PBO:0074102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 27 member 5","termid":"PBO:0074102"}


id: PBO:0070071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 28, pseudogene","termid":"PBO:0070071"}


id: PBO:0081943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc ribbon domain containing 2","termid":"PBO:0081943"}


id: PBO:0062921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P2Y receptor family member 8","termid":"PBO:0062921"}


id: PBO:0059469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"musashi RNA binding protein 1","termid":"PBO:0059469"}


id: PBO:0084038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI-anchored cell wall protein of unknown function; induced in response to cell wall damaging agents and by mutations in genes involved in cell wall biogenesis; sequence similarity to YBR162C/TOS1, a covalently bound cell wall protein; protein abundance increases in response to DNA replication stress","termid":"PBO:0084038"}


id: GO:0019671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The anaerobic chemical reactions and pathways resulting in the breakdown of glutamate via the intermediates mesaconate and S-citramalate, yielding energy in the form of ATP.","definition_xrefs":["GOC:rynl"],"gene_count":0,"genotype_count":0,"name":"obsolete glutamate catabolic process via mesaconate and citramalate (obsolete GO:0019671)","synonyms":[{"name":"glutamate fermentation via mesaconate and citramalate","type":"exact"}],"termid":"GO:0019671"}


id: GO:0034394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within the external part of the cell wall and/or plasma membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to cell surface","synonyms":[{"name":"protein localisation at cell surface","type":"exact"},{"name":"protein localization at cell surface","type":"exact"}],"termid":"GO:0034394"}


id: GO:0044093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.","definition_xrefs":["GO:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of molecular function","termid":"GO:0065009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of molecular function","termid":"GO:0044093"}


id: PBO:0080889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YTH N6-methyladenosine RNA binding protein C2","termid":"PBO:0080889"}


id: PBO:0079704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream binding protein 1","termid":"PBO:0079704"}


id: PBO:0038971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADORA2A antisense RNA 1","termid":"PBO:0038971"}


id: PBO:0017012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin domain-like protein Blt1","termid":"PBO:0017012"}


id: GO:0007072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription as the cell leaves M phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place.","definition_xrefs":["GOC:dph","GOC:isa_complete","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription involved in exit from mitosis (obsolete GO:0007072)","synonyms":[{"name":"activation of transcription on exit from mitosis","type":"narrow"}],"termid":"GO:0007072"}


id: GO:0050230
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: DNA 4,6-diamino-5-formamidopyrimidine = DNA adenine + H2O.","definition_xrefs":["MetaCyc:PURINE-IMIDAZOLE-RING-CYCLASE-RXN","EC:4.3.2.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclase activity","termid":"GO:0009975"},{"relation_name":"is_a","term_name":"amidine-lyase activity","termid":"GO:0016842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0009975"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0009975","GO:0016829"],"is_obsolete":false,"name":"purine imidazole-ring cyclase activity","synonyms":[{"name":"DNA-4,6-diamino-5-formamidopyrimidine 8-C,9-N-lyase (cyclizing)","type":"related"},{"name":"DNA-4,6-diamino-5-formamidopyrimidine 8-C,9-N-lyase (cyclizing; DNA-adenine-forming)","type":"related"},{"name":"DNA-4,6-diamino-5-formamidopyrimidine C8-N9-lyase (cyclizing; DNA-adenine-forming)","type":"related"}],"termid":"GO:0050230"}


id: PBO:0077200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane 4 L six family member 18","termid":"PBO:0077200"}


id: GO:0030259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Covalent attachment of a glycosyl residue to a lipid molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid biosynthetic process","termid":"GO:0008610"},{"relation_name":"is_a","term_name":"lipid modification","termid":"GO:0030258"},{"relation_name":"is_a","term_name":"glycosylation","termid":"GO:0070085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"lipid glycosylation","termid":"GO:0030259"}


id: PBO:0075237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 9","termid":"PBO:0075237"}


id: FYPO:0007003
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone exchange occurs to a normal (i.e. indistinguishable from wild type) extent at tRNA genes. Histone exchange is replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.","definition_xrefs":["PMID:26518661","PomBase:mah","GO:0043486","GO:0005721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal dynamic protein localization pattern","termid":"FYPO:0006999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"normal histone exchange at tRNA genes","synonyms":[{"name":"normal histone exchange at tRNA genes during mitotic cell cycle","type":"related"},{"name":"normal histone exchange at tRNA genes during vegetative growth","type":"exact"},{"name":"normal histone exchange at transfer RNA genes","type":"exact"}],"termid":"FYPO:0007003"}


id: PATO:0000797
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000797 urination value (obsolete PATO:0000797)","termid":"PATO:0000797"}


id: PBO:0082683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the ESCRT-II complex; ESCRT-II is involved in ubiquitin-dependent sorting of proteins into the endosome; appears to be functionally related to SNF7; involved in glucose derepression","termid":"PBO:0082683"}


id: GO:0061944
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of K48-linked ubiquitination, a protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation.","definition_xrefs":["PMID:23460740","GOC:BHF","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein K48-linked ubiquitination","termid":"GO:0061945"},{"relation_name":"is_a","term_name":"negative regulation of protein polyubiquitination","termid":"GO:1902915"},{"relation_name":"negatively_regulates","term_name":"protein K48-linked ubiquitination","termid":"GO:0070936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"negatively_regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein K48-linked ubiquitination","termid":"GO:0061944"}


id: PBO:0082198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Allantoinase; converts allantoin to allantoate in the first step of allantoin degradation; expression sensitive to nitrogen catabolite repression","termid":"PBO:0082198"}


id: GO:0009056
data:
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id: PBO:0001023
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.1.1.10","termid":"PBO:0001023"}


id: GO:0046876
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 3,4-didehydroretinal, a form of retinal that plays a role in the visual process in freshwater fish and some amphibians analogous to that of all-trans retinal in other vertebrates. 3,4-didehydro-11-cis-retinal combines with an opsin to form cyanopsin (cone) or porphyropsin (rod).","definition_xrefs":["GOC:ai","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoid binding","termid":"GO:0005501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0008289","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"3,4-didehydroretinal binding","synonyms":[{"name":"UV-sensitive opsin","type":"narrow"},{"name":"blue-sensitive opsin","type":"narrow"},{"name":"green-sensitive opsin","type":"narrow"},{"name":"long-wave-sensitive opsin","type":"narrow"},{"name":"opsin","type":"narrow"},{"name":"red-sensitive opsin","type":"narrow"},{"name":"short-wave-sensitive opsin","type":"narrow"},{"name":"violet-sensitive opsin","type":"narrow"}],"termid":"GO:0046876"}


id: PBO:0053295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIMS1 antisense RNA 1","termid":"PBO:0053295"}


id: PBO:0068290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease L","termid":"PBO:0068290"}


id: PBO:0055245
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2672","termid":"PBO:0055245"}


id: GO:0001691
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Maintains the phosphorylation state of certain molecules by associating with them and preventing them from associating with active phosphatases, and thus inhibiting the enzyme activity without interacting with the enzyme. Often pertains to proteins belonging to dual-specificity phosphatase family but lacking critical active site residues.","definition_xrefs":["GOC:ajp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase inhibitor activity","termid":"GO:0019212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0030234","GO:0003674","GO:0004857","GO:0140678","GO:0098772"],"is_obsolete":false,"name":"pseudophosphatase activity","termid":"GO:0001691"}


id: PBO:0038811
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 18","termid":"PBO:0038811"}


id: FYPO:0006625
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-4,5-bisphosphate measured in the plasma membrane is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased phosphatidylinositol phosphate level in plasma membrane","termid":"FYPO:0006222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased phosphatidylinositol-4,5-bisphosphate level in plasma membrane","synonyms":[{"name":"decreased 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate level in plasma membrane","type":"exact"},{"name":"decreased phosphatidylinositol-4,5-bisphosphate level in cell membrane","type":"exact"},{"name":"decreased phosphatidylinositol-4,5-bisphosphate level in plasma membrane during mitotic cell cycle","type":"related"},{"name":"decreased phosphatidylinositol-4,5-bisphosphate level in plasma membrane during vegetative growth","type":"exact"},{"name":"decreased plasma membrane PI(4,5)P2 level","type":"exact"},{"name":"decreased plasma membrane phosphatidylinositol-4,5-bisphosphate level","type":"exact"},{"name":"reduced phosphatidylinositol-4,5-bisphosphate level in plasma membrane","type":"exact"}],"termid":"FYPO:0006625"}


id: GO:0055088
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  {"annotated_genes":["SJAG_04317","SJAG_04323","SJAG_01912","SJAG_04550","SJAG_01422","SJAG_02064"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86185,95829,96683],"is_not":false,"summary":null,"term":"GO:0055088"},{"annotations":[98252],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090156"},{"annotations":[99629,89068],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0055091"}]},"cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of lipid within an organism or cell.","definition_xrefs":["GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemical homeostasis","termid":"GO:0048878"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01422":null,"SJAG_01912":null,"SJAG_02064":null,"SJAG_04317":null,"SJAG_04323":null,"SJAG_04550":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lipid homeostasis","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0055088","terms_by_termid":{"GO:0055088":null,"GO:0055091":null,"GO:0090156":null}}


id: FYPO:0002072
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which a prospore has a nucleus in an abnormal location. The normal location is at the midpoint of the long axis of the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized nucleus","termid":"FYPO:0002069"},{"relation_name":"output_of","term_name":"abnormal nucleus positioning in prospore","termid":"FYPO:0000942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized nucleus in prospore","synonyms":[{"name":"abnormal nucleus location in prospore","type":"exact"},{"name":"abnormal nucleus position in prospore","type":"exact"},{"name":"displaced nucleus in prospore","type":"exact"},{"name":"displaced nucleus prospore","type":"exact"},{"name":"mislocalised nucleus in prospore","type":"exact"},{"name":"mislocalized nucleus in forespore","type":"exact"},{"name":"mislocalized prospore nucleus","type":"exact"},{"name":"misplaced prospore nuclei","type":"exact"},{"name":"misplaced prospore nucleus","type":"exact"},{"name":"nuclear displacement in prospore","type":"exact"}],"termid":"FYPO:0002072"}


id: PBO:0064606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POU class 3 homeobox 4","termid":"PBO:0064606"}


id: PBO:0027743
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_cellular_response_to_camptothecin","termid":"PBO:0027743"}


id: RO:0002223
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of starts with","direct_ancestors":[{"relation_name":"is_a","term_name":"part_of","termid":"BFO:0000050"},{"relation_name":"is_a","term_name":"temporally_related_to","termid":"RO:0002222"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"starts","termid":"RO:0002223"}


id: PBO:0042785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 131","termid":"PBO:0042785"}


id: GO:0102865
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a gamma-linolenoyl-[glycerolipid] + 2 ferrocytochrome b5 + O2 + 2 H+ = a (9Z,12Z)-octadeca-9,12-dien-6-ynoyl-[glycerolipid] + 2 ferricytochrome b5 + 2 H2O.","definition_xrefs":["PMID:10848999","RHEA:46536","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"delta6-acyl-lipid desaturase activity","secondary_identifiers":["EC:1.14.19.38","MetaCyc:RXN-8343"],"termid":"GO:0102865"}


id: PBO:0062888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovo like transcriptional repressor 1","termid":"PBO:0062888"}


id: PBO:0080031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 17","termid":"PBO:0080031"}


id: GO:0050892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which nutrients are taken up from the contents of the intestine.","definition_xrefs":["GOC:dph","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system process","termid":"GO:0022600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intestinal absorption","termid":"GO:0050892"}


id: PBO:0046578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 20","termid":"PBO:0046578"}


id: PBO:0015683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eighteen interacting centromere protein Eic1","termid":"PBO:0015683"}


id: GO:2000183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of progesterone biosynthetic process.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of steroid biosynthetic process","termid":"GO:0010894"},{"relation_name":"is_a","term_name":"negative regulation of hormone biosynthetic process","termid":"GO:0032353"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of progesterone biosynthetic process","termid":"GO:2000182"},{"relation_name":"negatively_regulates","term_name":"progesterone biosynthetic process","termid":"GO:0006701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"negative regulation of progesterone biosynthetic process","synonyms":[{"name":"negative regulation of progesterone anabolism","type":"exact"},{"name":"negative regulation of progesterone biosynthesis","type":"exact"},{"name":"negative regulation of progesterone formation","type":"exact"},{"name":"negative regulation of progesterone synthesis","type":"exact"}],"termid":"GO:2000183"}


id: PBO:0054075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1425","termid":"PBO:0054075"}


id: PBO:0078517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 8","termid":"PBO:0078517"}


id: PBO:0069873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1160, pseudogene","termid":"PBO:0069873"}


id: GO:0034308
data:
  {"annotated_genes":["SJAG_03743","SJAG_03362","SJAG_02420","SJAG_02047","SJAG_02406","SJAG_03786","SJAG_01970","SJAG_02421","SJAG_03822","SJAG_04866","SJAG_00240","SJAG_01414","SJAG_00381","SJAG_01742","SJAG_03538","SJAG_04282","SJAG_04067","SJAG_05006","SJAG_00827","SJAG_03370"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006068"},{"annotations":[110770,94802,110771,84540,94801],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019655"},{"annotations":[92638],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:2001172"},{"annotations":[109840,85070],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0090180"},{"annotations":[103507,90332,109747,110169,112189,109753,95603],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009228"},{"annotations":[58775,65357,95605],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006772"},{"annotations":[106588,106587,95606],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036172"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving primary alcohols. A primary alcohol is any alcohol in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol metabolic process","termid":"GO:0006066"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00240":null,"SJAG_00381":null,"SJAG_00827":null,"SJAG_01414":null,"SJAG_01742":null,"SJAG_01970":null,"SJAG_02047":null,"SJAG_02406":null,"SJAG_02420":null,"SJAG_02421":null,"SJAG_03362":null,"SJAG_03370":null,"SJAG_03538":null,"SJAG_03743":null,"SJAG_03786":null,"SJAG_03822":null,"SJAG_04067":null,"SJAG_04282":null,"SJAG_04866":null,"SJAG_05006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"primary alcohol metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"monohydric alcohol metabolic process","type":"exact"},{"name":"primary alcohol metabolism","type":"exact"}],"termid":"GO:0034308","terms_by_termid":{"GO:0006068":null,"GO:0006772":null,"GO:0009228":null,"GO:0019655":null,"GO:0036172":null,"GO:0090180":null,"GO:2001172":null}}


id: GO:0022407
data:
  {"annotated_genes":["SJAG_03473","SJAG_01253","SJAG_02380","SJAG_04191","SJAG_00156","SJAG_03802","SJAG_03484","SJAG_01778","SJAG_00910","SJAG_00926"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95372,94652],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0022408"},{"annotations":[99666,102368],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060257"},{"annotations":[110243,104888,107519,112315,102012,104765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1900735"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of attachment of a cell to another cell.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell adhesion","termid":"GO:0030155"},{"relation_name":"regulates","term_name":"cell-cell adhesion","termid":"GO:0098609"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00156":null,"SJAG_00910":null,"SJAG_00926":null,"SJAG_01253":null,"SJAG_01778":null,"SJAG_02380":null,"SJAG_03473":null,"SJAG_03484":null,"SJAG_03802":null,"SJAG_04191":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"regulation of cell-cell adhesion","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0022407","terms_by_termid":{"GO:0022408":null,"GO:0060257":null,"GO:1900735":null}}


id: PBO:0047361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and leucine rich repeat protein 15","termid":"PBO:0047361"}


id: PBO:0084137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High-affinity copper transporter of the plasma membrane; acts as a trimer; gene is disrupted by a Ty2 transposon insertion in many laboratory strains of S. cerevisiae","termid":"PBO:0084137"}


id: PBO:0113385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; binds HEATR5 protein Laa1p; has some characteristics of a transcriptional activator; may be a target of Dbf2p-Mob1p kinase; GFP-fusion protein co-localizes with clathrin-coated vesicles; YML037C is not an essential gene","termid":"PBO:0113385"}


id: PBO:0080852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YdjC chitooligosaccharide deacetylase homolog","termid":"PBO:0080852"}


id: PBO:0079110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA splicing endonuclease subunit 2","termid":"PBO:0079110"}


id: PBO:0055924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 37 member A12, pseudogene","termid":"PBO:0055924"}


id: PBO:0089636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Rrp14","termid":"PBO:0089636"}


id: PATO:0005023
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parasagittal orientation","termid":"PATO:0005023"}


id: RO:0002293
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of ubiquiotously expressed in","direct_ancestors":[{"relation_name":"is_a","term_name":"expresses","termid":"RO:0002292"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitously_expresses","termid":"RO:0002293"}


id: PATO:0001493
data:
  {"annotation_feature_type":"gene","cv_name":"quality","direct_ancestors":[{"relation_name":"is_a","term_name":"growth rate","termid":"PATO:0001492"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypertrophic growth","termid":"PATO:0001493"}


id: PBO:0048502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth differentiation factor 2","termid":"PBO:0048502"}


id: PBO:0018194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar transmembrane transporter Hmt1","termid":"PBO:0018194"}


id: PBO:0043075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholinergic receptor nicotinic alpha 4 subunit","termid":"PBO:0043075"}


id: PBO:0113083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic 5' exoribonuclease; transcriptomics wide distributive exonuclease; involved in cytoplasmic mRNA degradation, turnover of tRNA introns and processing of spliceosomal introns; required for the final 5'-end processing of 25S rRNA; minor contributor to No-Go Decay and the unfolded protein response; decapping protein involved in surveillance and removal of non-canonical nicotinamide adenine dinucleotide (NAD) capped nuclear mRNAs (NAD-RNAs); sequence similarity to Rai1p","termid":"PBO:0113083"}


id: PBO:0042647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 22 pseudogene","termid":"PBO:0042647"}


id: PBO:0001035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human 4F5S homolog","termid":"PBO:0001035"}


id: FYPO:0000230
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the assembly and distribution of actin filaments and associated proteins does not occur normally, resulting in the formation of an abnormal actomyosin contractile ring in which actin is absent or mislocalized.","definition_xrefs":["PomBase:mah","PMID:19713940","GO:2000689"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"},{"relation_name":"is_a","term_name":"abnormal actin filament organization during vegetative growth","termid":"FYPO:0000727"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring organization","termid":"FYPO:0004738"},{"relation_name":"part_of","term_name":"abnormal actomyosin contractile ring assembly","termid":"FYPO:0000161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0004803"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000032"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0004803","FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0000032"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring actin filament organization","synonyms":[{"name":"abnormal actomyosin contractile ring actin filament organisation","type":"exact"},{"name":"abnormal actomyosin contractile ring actin filament organization during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring actin filament organization during vegetative growth","type":"exact"},{"name":"abnormal cytokinetic contractile ring actin filament organization","type":"exact"},{"name":"abnormal mitotic contractile ring actin filament organization","type":"exact"}],"termid":"FYPO:0000230"}


id: PBO:0054363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1756","termid":"PBO:0054363"}


id: PATO:0001368
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serration","termid":"PATO:0001976"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"erose","synonyms":[{"name":"jagged","type":"related"}],"termid":"PATO:0001368"}


id: GO:0002851
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of peripheral T cell tolerance induction.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of peripheral tolerance induction","termid":"GO:0002660"},{"relation_name":"is_a","term_name":"positive regulation of T cell tolerance induction","termid":"GO:0002666"},{"relation_name":"is_a","term_name":"positive regulation of T cell mediated immunity","termid":"GO:0002711"},{"relation_name":"is_a","term_name":"regulation of peripheral T cell tolerance induction","termid":"GO:0002849"},{"relation_name":"positively_regulates","term_name":"peripheral T cell tolerance induction","termid":"GO:0002458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of peripheral T cell tolerance induction","synonyms":[{"name":"activation of peripheral T cell tolerance induction","type":"narrow"},{"name":"stimulation of peripheral T cell tolerance induction","type":"narrow"},{"name":"up regulation of peripheral T cell tolerance induction","type":"exact"},{"name":"up-regulation of peripheral T cell tolerance induction","type":"exact"},{"name":"upregulation of peripheral T cell tolerance induction","type":"exact"}],"termid":"GO:0002851"}


id: PBO:0000748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosyltransferase complex subunit Alg1 (predicted)","termid":"PBO:0000748"}


id: PBO:0027603
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mitotic_spindle_microtubule_depolymerization","termid":"PBO:0027603"}


id: PBO:0027395
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_diacylglycerol_O-acyltransferase_activity","termid":"PBO:0027395"}


id: FYPO:0006081
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to actin cortical patches is increased.","definition_xrefs":["PomBase:mah","PMID:20705466"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to actin cortical patch","termid":"FYPO:0000742"},{"relation_name":"is_a","term_name":"increased protein localization to cell cortex during vegetative growth","termid":"FYPO:0009059"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased protein localization to actin cortical patch","synonyms":[{"name":"increased protein localisation to actin cortical patch during vegetative growth","type":"exact"},{"name":"increased protein localization to F-actin patch","type":"exact"},{"name":"increased protein localization to actin cortical patch during mitotic cell cycle","type":"related"},{"name":"increased protein localization to actin cortical patch during vegetative growth","type":"exact"},{"name":"increased protein localization to actin patch","type":"exact"}],"termid":"FYPO:0006081"}


id: GO:0071051
data:
  {"annotated_genes":["SJAG_03179","SJAG_04153","SJAG_01521","SJAG_01191","SJAG_03745","SJAG_04321","SJAG_00854"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88273,89105,91972,93319,98174,102584,111611],"is_not":false,"summary":null,"term":"GO:0071051"}]},"cv_name":"biological_process","definition":"Any process involved in forming the mature 3' end of a snoRNA molecule linked to prior polyadenylation of the 3'-end of the precursor snoRNA.","definition_xrefs":["GOC:krc","PMID:18951092","GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sno(s)RNA 3'-end processing","termid":"GO:0031126"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00854":null,"SJAG_01191":null,"SJAG_01521":null,"SJAG_03179":null,"SJAG_03745":null,"SJAG_04153":null,"SJAG_04321":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016074"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016074","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"poly(A)-dependent snoRNA 3'-end processing","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"polyadenylation-dependent snoRNA 3'-end processing","type":"exact"},{"name":"sno(s)RNA polyadenylation","type":"narrow"}],"termid":"GO:0071051","terms_by_termid":{"GO:0071051":null}}


id: GO:0080193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Lateral growth of the older parts of a stem that occurs when the central parenchyma cells and the not yet fully differentiated fiber cells of the bundle sheaths continue to undergo cell division and expansion for a long period of time, leading to an increase in girth of the stem.","definition_xrefs":["GOC:dhl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral growth","termid":"GO:0080190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"diffuse secondary thickening","termid":"GO:0080193"}


id: GO:1901097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of autophagosome maturation.","definition_xrefs":["GOC:autophagy","GOC:TermGenie","PMID:10436019","PMID:21383079"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macroautophagy","termid":"GO:0016242"},{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex disassembly","termid":"GO:0043242"},{"relation_name":"is_a","term_name":"regulation of autophagosome maturation","termid":"GO:1901096"},{"relation_name":"negatively_regulates","term_name":"autophagosome maturation","termid":"GO:0097352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006914"},{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"negatively_regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006914","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"negative regulation of autophagosome maturation","secondary_identifiers":["GO:1902453"],"synonyms":[{"name":"down regulation of amphisome-lysosome fusion","type":"narrow"},{"name":"down regulation of autolysosome formation","type":"narrow"},{"name":"down regulation of autophagic vacuole fusion","type":"exact"},{"name":"down regulation of autophagic vacuole maturation","type":"exact"},{"name":"down regulation of autophagosome maturation","type":"exact"},{"name":"down regulation of fusion of autophagosome with lysosome","type":"narrow"},{"name":"down-regulation of amphisome-lysosome fusion","type":"narrow"},{"name":"down-regulation of autolysosome formation","type":"narrow"},{"name":"down-regulation of autophagic vacuole fusion","type":"exact"},{"name":"down-regulation of autophagic vacuole maturation","type":"exact"},{"name":"down-regulation of autophagosome maturation","type":"exact"},{"name":"down-regulation of fusion of autophagosome with lysosome","type":"narrow"},{"name":"downregulation of amphisome-lysosome fusion","type":"narrow"},{"name":"downregulation of autolysosome formation","type":"narrow"},{"name":"downregulation of autophagic vacuole fusion","type":"exact"},{"name":"downregulation of autophagic vacuole maturation","type":"exact"},{"name":"downregulation of autophagosome maturation","type":"exact"},{"name":"downregulation of fusion of autophagosome with lysosome","type":"narrow"},{"name":"inhibition of amphisome-lysosome fusion","type":"narrow"},{"name":"inhibition of autolysosome formation","type":"narrow"},{"name":"inhibition of autophagic vacuole fusion","type":"narrow"},{"name":"inhibition of autophagic vacuole maturation","type":"narrow"},{"name":"inhibition of autophagosome maturation","type":"exact"},{"name":"inhibition of fusion of autophagosome with lysosome","type":"narrow"},{"name":"negative regulation of amphisome-lysosome fusion","type":"narrow"},{"name":"negative regulation of autolysosome formation","type":"narrow"},{"name":"negative regulation of autophagic vacuole fusion","type":"exact"},{"name":"negative regulation of autophagosome fusion","type":"exact"},{"name":"negative regulation of fusion of autophagosome with lysosome","type":"narrow"}],"termid":"GO:1901097"}


id: PBO:0003514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Sfb3 (predicted)","termid":"PBO:0003514"}


id: GO:0106392
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Aprotein complex required for the splicing of intron 3 of the cytochrome b (COB) gene. In S. cerevisiae, the complex contains the maturase bI3 (which derives from one of the products of the splicing), the MRS1 cofactor and the intron 4 of the cytochrome b pre-mRNA. The two proteins stimulate the ribozyme activity of the pre-mRNA which autoctalyse a group I intron splicing.","definition_xrefs":["GOC:lnp","PMID:11773622"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoribonuclease complex","termid":"GO:1902555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"bI3 intron splicing complex","secondary_identifiers":["Intact:EBI-16426213"],"termid":"GO:0106392"}


id: GO:0047919
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-alpha-D-mannose + H2O + 2 NAD+ = GDP-D-mannuronate + 3 H+ + 2 NADH.","definition_xrefs":["EC:1.1.1.132","RHEA:21728"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"GDP-mannose 6-dehydrogenase activity","secondary_identifiers":["MetaCyc:GDP-MANNOSE-6-DEHYDROGENASE-RXN","KEGG_REACTION:R00880"],"synonyms":[{"name":"GDP mannose dehydrogenase activity","type":"related"},{"name":"GDP-D-mannose:NAD+ 6-oxidoreductase activity","type":"related"},{"name":"GDPmannose 6-dehydrogenase activity","type":"related"},{"name":"guanosine diphospho-D-mannose dehydrogenase activity","type":"related"},{"name":"guanosine diphosphomannose dehydrogenase activity","type":"related"}],"termid":"GO:0047919"}


id: GO:0008131
data:
  {"annotated_genes":["SJAG_02496"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110909],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003884"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a primary methyl amine + H2O + O2 = an aldehyde + H2O2 + NH4+.","definition_xrefs":["RHEA:16153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor","termid":"GO:0016641"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02496":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"primary methylamine oxidase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0008122","Reactome:R-HSA-141202","KEGG_REACTION:R01853","Reactome:R-HSA-374909","Reactome:R-HSA-379395","Reactome:R-HSA-379382","Reactome:R-HSA-5696183","EC:1.4.3.21","Reactome:R-HSA-141186","Reactome:R-HSA-5603108","Reactome:R-HSA-141200","MetaCyc:RXN-9597","GO:0004041","Reactome:R-HSA-5696146"],"synonyms":[{"name":"amine oxidase (copper-containing) activity","type":"narrow"},{"name":"amine oxidase activity","type":"broad"},{"name":"primary amine oxidase activity","type":"related"},{"name":"primary-amine:oxygen oxidoreductase (deaminating) activity","type":"exact"}],"termid":"GO:0008131","terms_by_termid":{"GO:0003884":null}}


id: PBO:0000044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase publication types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paper","termid":"PBO:0000044"}


id: PBO:0060519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NARF antisense RNA 1","termid":"PBO:0060519"}


id: PBO:0040114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and SOCS box containing 1","termid":"PBO:0040114"}


id: SO:0001770
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant that does not affect the function of the gene or cause disease.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_phenotype","termid":"SO:0001769"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign_variant","synonyms":[{"name":"benign variant","type":"exact"}],"termid":"SO:0001770"}


id: FYPO:0006949
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of S-methyl-L-ergothioneine measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular S-methyl-L-ergothioneine level during vegetative growth","synonyms":[{"name":"increased S-methyl-L-ergothioneine accumulation during vegetative growth","type":"related"},{"name":"increased cellular S-methyl-L-ergothioneine level during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006949"}


id: PBO:0079685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitination factor E4B","termid":"PBO:0079685"}


id: GO:0140829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(in) + HCO3-(out) = solute(out) + HCO3-(in).","definition_xrefs":["PMID:12440690"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion transmembrane transporter activity","termid":"GO:0008509"},{"relation_name":"is_a","term_name":"bicarbonate transmembrane transporter activity","termid":"GO:0015106"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"},{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"bicarbonate:monoatomic anion antiporter activity","secondary_identifiers":["TC:2.A.31.1.1"],"synonyms":[{"name":"bicarbonate:anion antiporter activity","type":"broad"},{"name":"hydrogencarbonate:monoatomic anion antiporter activity","type":"exact"}],"termid":"GO:0140829"}


id: PBO:0040205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"astrotactin 1","termid":"PBO:0040205"}


id: PBO:0049479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H1.3 linker histone, cluster member","termid":"PBO:0049479"}


id: GO:2000094
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of mesonephric nephron tubule epithelial cell differentiation.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nephron tubule epithelial cell differentiation","termid":"GO:0072183"},{"relation_name":"is_a","term_name":"regulation of mesonephric nephron tubule epithelial cell differentiation","termid":"GO:2000093"},{"relation_name":"negatively_regulates","term_name":"mesonephric nephron tubule epithelial cell differentiation","termid":"GO:0061265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mesonephric nephron tubule epithelial cell differentiation","termid":"GO:2000094"}


id: PBO:0055580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3016","termid":"PBO:0055580"}


id: GO:0045178
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region of a cell situated near the base. For example, in a polarized epithelial cell, the basal surface rests on the basal lamina that separates the epithelium from other tissue.","definition_xrefs":["GOC:mah","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"basal part of cell","termid":"GO:0045178"}


id: GO:0140741
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyzes the reaction: ATP + [ThiI sulfur-carrier protein]-S-sulfanyl-L-cysteine + uracil in tRNA + 2 reduced ferredoxin [iron-sulfur] cluster = AMP + diphosphate + 4-thiouracil in tRNA + [ThiI sulfur-carrier protein]-L-cysteine + 2 oxidized ferredoxin [iron-sulfur] cluster.","definition_xrefs":["RHEA:24176","PMID:27791189","PMID:5541999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfurtransferase activity","termid":"GO:0016783"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0140101","GO:0140098","GO:0003824","GO:0016782"],"is_obsolete":false,"name":"tRNA-uracil-4 sulfurtransferase activity","secondary_identifiers":["MetaCyc:RXN-18388","EC:2.8.1.4"],"synonyms":[{"name":"tRNA U4 sulfurtransferase","type":"exact"},{"name":"tRNA uracil 4 sulfurtransferase","type":"exact"},{"name":"tRNA uracil 4-sulfurtransferase","type":"exact"}],"termid":"GO:0140741"}


id: FYPO:0002226
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which a cell undergoes one or a few rounds of cell division before cells die, resulting in the formation a colony that contains only a few inviable cells in which cell shape is altered and cell size remains normal. Up to 6 rounds of cell division (generating 64 cells) may be observed, but 3 divisions or fewer is more typical.","definition_xrefs":["PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable microcolony, abnormal cell shape, normal cell size (obsolete FYPO:0002226)","termid":"FYPO:0002226"}


id: MOD:01452
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Covalent modification of a peptide or protein amino acid O-phosphopantetheine-L-serine with secondary neutral loss of pantetheine resulting in O-phospho-L-serine.","definition_xrefs":["PubMed:17042494","PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"O-phosphopantetheine-L-serine","termid":"MOD:00159"},{"relation_name":"is_a","term_name":"O-phospho-L-serine","termid":"MOD:00046"},{"relation_name":"is_a","term_name":"modified residue with a secondary neutral loss","termid":"MOD:00431"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00696"}],"interesting_parent_ids":["MOD:00696"],"is_obsolete":false,"name":"O-phosphopantetheine-L-serine with neutral loss of pantetheine","termid":"MOD:01452"}


id: GO:0006877
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of cobalt (Co2+) ions within a cell.","definition_xrefs":["GOC:mah","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular monoatomic cation homeostasis","termid":"GO:0030003"},{"relation_name":"is_a","term_name":"inorganic ion homeostasis","termid":"GO:0098771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"intracellular cobalt ion homeostasis","synonyms":[{"name":"cellular cobalt ion homeostasis","type":"exact"},{"name":"cobalt homeostasis","type":"broad"}],"termid":"GO:0006877"}


id: PBO:0074588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 4","termid":"PBO:0074588"}


id: PBO:0029630
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-lagging_chromosomes","termid":"PBO:0029630"}


id: PBO:0069987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1282, pseudogene","termid":"PBO:0069987"}


id: PBO:0065085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase AMP-activated catalytic subunit alpha 2","termid":"PBO:0065085"}


id: GO:0005818
data:
  {"annotated_genes":["SJAG_01613","SJAG_00655","SJAG_02045","SJAG_02286","SJAG_02695","SJAG_01370","SJAG_01297","SJAG_02509","SJAG_04387","SJAG_04003","SJAG_02336","SJAG_00930"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[108274,100126,87395,95283,103335,103549],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000235"},{"annotations":[87011],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032117"},{"annotations":[83788],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990574"},{"annotations":[87401,104378,99650,100003],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061673"},{"annotations":[93040],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905721"}]},"cv_name":"cellular_component","definition":"An array of microtubules emanating from a spindle pole MTOC that do not connect to kinetochores.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular non-membrane-bounded organelle","termid":"GO:0043232"},{"relation_name":"is_a","term_name":"supramolecular complex","termid":"GO:0099080"},{"relation_name":"part_of","term_name":"spindle","termid":"GO:0005819"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00655":null,"SJAG_00930":null,"SJAG_01297":null,"SJAG_01370":null,"SJAG_01613":null,"SJAG_02045":null,"SJAG_02286":null,"SJAG_02336":null,"SJAG_02509":null,"SJAG_02695":null,"SJAG_04003":null,"SJAG_04387":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"aster","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005818","terms_by_termid":{"GO:0000235":null,"GO:0032117":null,"GO:0061673":null,"GO:1905721":null,"GO:1990574":null}}


id: FYPO:0004281
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of xanthine DNA N-glycosylase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA N-glycosylase activity","termid":"FYPO:0008216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000654","FYPO:0000652","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"abnormal xanthine DNA N-glycosylase activity","termid":"FYPO:0004281"}


id: GO:0000446
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The THO complex when it is acting as a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. In S. cerevisiae, it is composed of four subunits: Hpr1, Tho2, Thp2, and Mft1, while the human complex is composed of 7 subunits.","definition_xrefs":["GOC:krc","GOC:se","PMID:11979277","PMID:11060033","PMID:16983072"],"direct_ancestors":[{"relation_name":"is_a","term_name":"THO complex","termid":"GO:0000347"},{"relation_name":"is_a","term_name":"transcription elongation factor complex","termid":"GO:0008023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005654","GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"nucleoplasmic THO complex","termid":"GO:0000446"}


id: GO:0004048
data:
  {"annotated_genes":["SJAG_03167"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100505],"is_not":false,"summary":null,"term":"GO:0004048"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: N-(5-phospho-beta-D-ribosyl)anthranilate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate.","definition_xrefs":["EC:2.4.2.18","RHEA:11768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03167":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"anthranilate phosphoribosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R01073","MetaCyc:PRTRANS-RXN"],"synonyms":[{"name":"N-(5-phospho-D-ribosyl)-anthranilate:diphosphate phospho-alpha-D-ribosyltransferase activity","type":"related"},{"name":"PRT","type":"related"},{"name":"anthranilate 5-phosphoribosylpyrophosphate phosphoribosyltransferase activity","type":"related"},{"name":"anthranilate phosphoribosylpyrophosphate phosphoribosyltransferase activity","type":"related"},{"name":"anthranilate-PP-ribose-P phosphoribosyltransferase activity","type":"related"},{"name":"phosphoribosyl-anthranilate diphosphorylase activity","type":"related"},{"name":"phosphoribosyl-anthranilate pyrophosphorylase activity","type":"related"},{"name":"phosphoribosylanthranilate pyrophosphorylase activity","type":"related"},{"name":"phosphoribosylanthranilate transferase activity","type":"related"}],"termid":"GO:0004048","terms_by_termid":{"GO:0004048":null}}


id: GO:0046994
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor and reduces quinone or similar compound.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on hydrogen as donor","termid":"GO:0016695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on hydrogen as donor, with a quinone or similar compound as acceptor","secondary_identifiers":["EC:1.12.5.-"],"termid":"GO:0046994"}


id: PBO:0091314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMN complex subunit Yip12/Gem2","termid":"PBO:0091314"}


id: PBO:0087434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit d of the V0 integral membrane domain of V-ATPase; part of the electrogenic proton pump found in the endomembrane system; required for V1 domain assembly on the vacuolar membrane; the V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase) has five subunits","termid":"PBO:0087434"}


id: GO:1902031
data:
  {"annotated_genes":["SJAG_00685","SJAG_05314"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85725],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905857"},{"annotations":[74893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043456"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of NADP metabolic process.","definition_xrefs":["PMID:23334421","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of purine nucleotide metabolic process","termid":"GO:1900542"},{"relation_name":"regulates","term_name":"NADP metabolic process","termid":"GO:0006739"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00685":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"regulation of NADP metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of NAD phosphorylation and dephosphorylation","type":"related"},{"name":"regulation of NADP (oxidized) metabolic process","type":"exact"},{"name":"regulation of NADP (oxidized) metabolism","type":"exact"},{"name":"regulation of NADP (reduced) metabolic process","type":"exact"},{"name":"regulation of NADP (reduced) metabolism","type":"exact"},{"name":"regulation of NADP metabolism","type":"exact"},{"name":"regulation of NADPH metabolic process","type":"exact"},{"name":"regulation of NADPH metabolism","type":"exact"},{"name":"regulation of nicotinamide adenine dinucleotide phosphate metabolic process","type":"exact"},{"name":"regulation of nicotinamide adenine dinucleotide phosphate metabolism","type":"exact"},{"name":"regulation of oxidized NADP metabolic process","type":"exact"},{"name":"regulation of oxidized NADP metabolism","type":"exact"},{"name":"regulation of oxidized nicotinamide adenine dinucleotide phosphate metabolic process","type":"exact"},{"name":"regulation of oxidized nicotinamide adenine dinucleotide phosphate metabolism","type":"exact"},{"name":"regulation of reduced NADP metabolic process","type":"exact"},{"name":"regulation of reduced NADP metabolism","type":"exact"},{"name":"regulation of reduced nicotinamide adenine dinucleotide phosphate metabolic process","type":"exact"},{"name":"regulation of reduced nicotinamide adenine dinucleotide phosphate metabolism","type":"exact"}],"termid":"GO:1902031","terms_by_termid":{"GO:0043456":null,"GO:1905857":null}}


id: GO:1901915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of capsule organization.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of capsule organization","termid":"GO:1901913"},{"relation_name":"positively_regulates","term_name":"capsule organization","termid":"GO:0045230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of capsule organization","synonyms":[{"name":"activation of capsule organisation","type":"narrow"},{"name":"activation of capsule organization","type":"narrow"},{"name":"activation of capsule organization and biogenesis","type":"related"},{"name":"positive regulation of capsule organisation","type":"exact"},{"name":"positive regulation of capsule organization and biogenesis","type":"related"},{"name":"up regulation of capsule organisation","type":"exact"},{"name":"up regulation of capsule organization","type":"exact"},{"name":"up regulation of capsule organization and biogenesis","type":"related"},{"name":"up-regulation of capsule organisation","type":"exact"},{"name":"up-regulation of capsule organization","type":"exact"},{"name":"up-regulation of capsule organization and biogenesis","type":"related"},{"name":"upregulation of capsule organisation","type":"exact"},{"name":"upregulation of capsule organization","type":"exact"},{"name":"upregulation of capsule organization and biogenesis","type":"related"}],"termid":"GO:1901915"}


id: PBO:0031762
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell_cycle_arrest_in_mitotic_G1_phase","termid":"PBO:0031762"}


id: GO:0043576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"respiratory gaseous exchange by respiratory system","termid":"GO:0007585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of respiratory gaseous exchange","termid":"GO:0043576"}


id: PBO:0046840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid binding protein 5 pseudogene 13","termid":"PBO:0046840"}


id: PR:O74331
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rlp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74331"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rlp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1685.11","synonyms":[{"name":"RecA-like protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rlp1","type":"exact"}],"termid":"PR:O74331"}


id: PR:O74442
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ubp16 gene.","definition_xrefs":["UniProtKB:O74442","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin carboxyl-terminal hydrolase 16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1682.12c","synonyms":[{"name":"Spom972h-ubp16","type":"exact"},{"name":"deubiquitinating enzyme 16 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin thioesterase 16 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-specific-processing protease 16 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74442"}


id: GO:0003129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The close range interaction between mesoderm and endoderm or ectoderm that causes cells to change their fates and specify the development of the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organ induction","termid":"GO:0001759"},{"relation_name":"is_a","term_name":"regulation of heart morphogenesis","termid":"GO:2000826"},{"relation_name":"positively_regulates","term_name":"heart field specification","termid":"GO:0003128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"heart induction","termid":"GO:0003129"}


id: PBO:0030676
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_size","termid":"PBO:0030676"}


id: PBO:0089268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio family RNA-binding protein Puf6","termid":"PBO:0089268"}


id: GO:0045436
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the cyclization of beta rings at one or both ends of the lycopene molecule (psi, psi-carotene) to form gamma-carotene or the bicyclic beta-carotene (beta, beta-carotene), respectively.","definition_xrefs":["PMID:8837512"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclase activity","termid":"GO:0009975"},{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity","termid":"GO:0016860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0009975"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824","GO:0009975"],"is_obsolete":false,"name":"lycopene beta cyclase activity","secondary_identifiers":["RHEA:32219","MetaCyc:RXN1F-150"],"synonyms":[{"name":"crtL","type":"related"},{"name":"lycopene cyclase","type":"broad"}],"termid":"GO:0045436"}


id: PBO:0003575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin Kap109","termid":"PBO:0003575"}


id: PBO:0053131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactase like","termid":"PBO:0053131"}


id: PBO:0072064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S11 pseudogene 2","termid":"PBO:0072064"}


id: PBO:0065465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, non-ATPase 7 pseudogene 1","termid":"PBO:0065465"}


id: PBO:0086152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for optimal translation under nutrient stress; perturbs association of Yef3p with ribosomes; involved in TOR signaling; binds G4 quadruplex and purine motif triplex nucleic acid; helps maintain telomere structure; protein abundance increases in response to DNA replication stress; serves as a ribosome preservation factor both during quiescence and recovery","termid":"PBO:0086152"}


id: PBO:0078207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 6-9","termid":"PBO:0078207"}


id: PBO:0052309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA0408","termid":"PBO:0052309"}


id: GO:0035450
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of a plastid thylakoid membrane consisting of gene products and protein complexes that are loosely bound to its lumenal surface, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:bf","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of plastid thylakoid membrane","termid":"GO:0035449"},{"relation_name":"is_a","term_name":"extrinsic component of plastid inner membrane","termid":"GO:0035453"},{"relation_name":"part_of","term_name":"stromal side of plastid inner membrane","termid":"GO:0098570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"extrinsic component of lumenal side of plastid thylakoid membrane","synonyms":[{"name":"extrinsic to lumenal leaflet of plastid thylakoid membrane","type":"exact"},{"name":"extrinsic to lumenal side of plastid thylakoid membrane","type":"narrow"},{"name":"peripheral to lumenal side of plastid thylakoid membrane","type":"exact"}],"termid":"GO:0035450"}


id: PBO:0075557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPEN antisense RNA 1","termid":"PBO:0075557"}


id: GO:0070652
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that localizes to interphase centrosomes and to mitotic spindle tubules and regulates mitotic spindle assembly and centrosome integrity; in human, the complex consists of eight subunits, some of which are homologous to subunits of the Drosophila Augmin complex.","definition_xrefs":["PMID:19427217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule associated complex","termid":"GO:0005875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0015630"],"is_obsolete":false,"name":"HAUS complex","synonyms":[{"name":"HAUS augmin complex","type":"exact"}],"termid":"GO:0070652"}


id: PBO:0056727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesoderm development LRP chaperone","termid":"PBO:0056727"}


id: PBO:0080907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7","termid":"PBO:0080907"}


id: GO:0048763
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables transmembrane transfer of calcium ions from an intracellular store to the cytosol on induction by increased calcium concentration.","definition_xrefs":["PMID:8381210","PMID:8653752","PMID:2990997","GOC:jid","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellularly gated calcium channel activity","termid":"GO:0015278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"calcium-induced calcium release activity","termid":"GO:0048763"}


id: GO:0016430
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N6-methyladenine.","definition_xrefs":["EC:2.1.1.55"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methyltransferase activity","termid":"GO:0008170"},{"relation_name":"is_a","term_name":"tRNA (adenine) methyltransferase activity","termid":"GO:0016426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0140101","GO:0003674","GO:0016740","GO:0140098"],"is_obsolete":false,"name":"tRNA (adenine-N6)-methyltransferase activity","secondary_identifiers":["MetaCyc:TRNA-ADENINE-N6--METHYLTRANSFERASE-RXN","RHEA:16785"],"synonyms":[{"name":"S-adenosyl-L-methionine:tRNA (adenine-6-N-)-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:tRNA (adenine-N6-)-methyltransferase activity","type":"related"},{"name":"tRNA (adenine-N6-)-methyltransferase activity","type":"exact"}],"termid":"GO:0016430"}


id: PBO:0090376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSU-rRNA maturation protein Tsr4 homolog 2 Tsr402","termid":"PBO:0090376"}


id: PBO:0073134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC14 like lipid binding 6","termid":"PBO:0073134"}


id: PBO:0080091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 53","termid":"PBO:0080091"}


id: PBO:0001719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomere length regulator protein Rif1","termid":"PBO:0001719"}


id: GO:0097260
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: leukotriene A4 = eoxin A4.","definition_xrefs":["PMID:18647347","PMID:18184802","GOC:mw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isomerase activity","termid":"GO:0016853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"eoxin A4 synthase activity","secondary_identifiers":["Reactome:R-HSA-2162019"],"termid":"GO:0097260"}


id: PBO:0051108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1-45","termid":"PBO:0051108"}


id: PATO:0001563
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A mass which is higher than normal or average.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"mass","termid":"PATO:0000125"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased mass","secondary_identifiers":["PATO:0000578"],"synonyms":[{"name":"high mass","type":"exact"},{"name":"large mass","type":"exact"}],"termid":"PATO:0001563"}


id: GO:0001659
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process in which an organism modulates its internal body temperature.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal-level homeostasis","termid":"GO:0048871"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"temperature homeostasis","secondary_identifiers":["Wikipedia:Thermoregulation"],"synonyms":[{"name":"thermoregulation","type":"exact"}],"termid":"GO:0001659"}


id: GO:0007058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the spindle during meiosis II of a meiotic cell cycle in females. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle assembly involved in female meiosis","termid":"GO:0007056"},{"relation_name":"part_of","term_name":"female meiosis II","termid":"GO:0007147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0000226","GO:0007010","GO:0140013","GO:0044085","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"spindle assembly involved in female meiosis II","synonyms":[{"name":"female meiosis II spindle assembly","type":"related"}],"termid":"GO:0007058"}


id: _global:produces
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"produces","secondary_identifiers":["RO:0003000"],"termid":"_global:produces"}


id: GO:0031098
data:
  {"annotated_genes":["SJAG_01787","SJAG_00610","SJAG_04522","SJAG_01114","SJAG_03753","SJAG_04825","SJAG_02392","SJAG_00424","SJAG_01181","SJAG_05000","SJAG_04551","SJAG_03263","SJAG_04666"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88285,98237,107120],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000196"},{"annotations":[114489,95522,103169,103741,99919,91904],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1903138"},{"annotations":[86799,88440,98948,85469],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1903139"}]},"cv_name":"biological_process","definition":"The series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays a signal.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to stress","termid":"GO:0033554"},{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_01114":null,"SJAG_01181":null,"SJAG_01787":null,"SJAG_02392":null,"SJAG_03263":null,"SJAG_03753":null,"SJAG_04522":null,"SJAG_04551":null,"SJAG_04666":null,"SJAG_04825":null,"SJAG_05000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"stress-activated protein kinase signaling cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"JNK signaling pathway","type":"narrow"},{"name":"JNK signalling pathway","type":"narrow"},{"name":"SAPK signaling pathway","type":"exact"},{"name":"SAPK signalling pathway","type":"exact"},{"name":"stress-activated protein kinase signaling pathway","type":"exact"},{"name":"stress-activated protein kinase signalling pathway","type":"exact"}],"termid":"GO:0031098","terms_by_termid":{"GO:0000196":null,"GO:1903138":null,"GO:1903139":null}}


id: PBO:0075544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPECC1 divergent transcript","termid":"PBO:0075544"}


id: PBO:0089624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial iron-sulfur cluster exporter Atm1","termid":"PBO:0089624"}


id: PBO:0065619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase domain containing 1","termid":"PBO:0065619"}


id: PBO:0081847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 780B","termid":"PBO:0081847"}


id: GO:0061131
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a specific region of the gut is delineated into the area in which the pancreas will develop.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of animal organ identity","termid":"GO:0010092"},{"relation_name":"part_of","term_name":"pancreatic bud formation","termid":"GO:0061130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreas field specification","termid":"GO:0061131"}


id: FYPO:0006408
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of nitric oxide measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell","termid":"FYPO:0000989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered cellular nitric oxide level","synonyms":[{"name":"abnormal cellular nitric oxide accumulation","type":"related"},{"name":"abnormal cellular nitric oxide level","type":"exact"},{"name":"altered cellular NO level","type":"exact"}],"termid":"FYPO:0006408"}


id: PBO:0054800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2213","termid":"PBO:0054800"}


id: PBO:0073358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family E member 2","termid":"PBO:0073358"}


id: PBO:0056402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPT intronic transcript 1","termid":"PBO:0056402"}


id: PBO:0065276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich coiled-coil 1","termid":"PBO:0065276"}


id: PBO:0070523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 22","termid":"PBO:0070523"}


id: PBO:0040500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aurora kinase A pseudogene 2","termid":"PBO:0040500"}


id: GO:1901994
data:
  {"annotated_genes":["SJAG_04259","SJAG_04126","SJAG_04287","SJAG_01515","SJAG_04280","SJAG_03854","SJAG_01330","SJAG_03327","SJAG_01082","SJAG_01837","SJAG_02771","SJAG_00364"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102433,110653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905318"},{"annotations":[87452,102727,112230],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033315"},{"annotations":[102434,97883,112848],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033316"},{"annotations":[112177,107713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110031"},{"annotations":[94772],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902103"},{"annotations":[109945],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[97418],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of meiotic cell cycle phase transition.","definition_xrefs":["PMID:22841721","GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of meiotic cell cycle","termid":"GO:0051447"},{"relation_name":"is_a","term_name":"negative regulation of cell cycle phase transition","termid":"GO:1901988"},{"relation_name":"is_a","term_name":"regulation of meiotic cell cycle phase transition","termid":"GO:1901993"},{"relation_name":"negatively_regulates","term_name":"meiotic cell cycle phase transition","termid":"GO:0044771"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_01082":null,"SJAG_01330":null,"SJAG_01515":null,"SJAG_01837":null,"SJAG_02771":null,"SJAG_03327":null,"SJAG_03854":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04280":null,"SJAG_04287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of meiotic cell cycle phase transition","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of cell cycle transition","type":"broad"},{"name":"down regulation of meiotic cell cycle phase transition","type":"exact"},{"name":"down-regulation of cell cycle transition","type":"broad"},{"name":"down-regulation of meiotic cell cycle phase transition","type":"exact"},{"name":"downregulation of cell cycle transition","type":"broad"},{"name":"downregulation of meiotic cell cycle phase transition","type":"exact"},{"name":"inhibition of cell cycle transition","type":"broad"},{"name":"inhibition of meiotic cell cycle phase transition","type":"narrow"},{"name":"negative regulation of cell cycle transition","type":"broad"}],"termid":"GO:1901994","terms_by_termid":{"GO:0033315":null,"GO:0033316":null,"GO:0110031":null,"GO:1902103":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: PBO:0091863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-B homolog Cbh2, domesticated transposable element","termid":"PBO:0091863"}


id: PBO:0082685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; involved in localization of actin and chitin; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p","termid":"PBO:0082685"}


id: SO:0002361
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that codes for cytosolic LSU rRNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"cytosolic_rRNA_gene","termid":"SO:0002360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_LSU_rRNA_gene","synonyms":[{"name":"cytosolic large subunit rRNA gene","type":"exact"}],"termid":"SO:0002361"}


id: PR:O94660
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nitrilase homolog 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02781","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolase nit2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.02","secondary_identifiers":["UniProtKB:O94660"],"synonyms":[{"name":"Spom972h-NIT1","type":"exact"}],"termid":"PR:O94660"}


id: GO:2000851
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glucocorticoid secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of corticosteroid hormone secretion","termid":"GO:2000848"},{"relation_name":"is_a","term_name":"regulation of glucocorticoid secretion","termid":"GO:2000849"},{"relation_name":"positively_regulates","term_name":"glucocorticoid secretion","termid":"GO:0035933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of glucocorticoid secretion","termid":"GO:2000851"}


id: GO:0015887
data:
  {"annotated_genes":["SJAG_05175"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104419],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098717"}]},"cv_name":"biological_process","definition":"The process in which pantothenate is transported across a membrane. Pantothenate is the anion of pantothenic acid, the amide of beta-alanine and pantoic acid; it is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.","definition_xrefs":["ISBN:0721662544","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"},{"relation_name":"is_a","term_name":"vitamin transmembrane transport","termid":"GO:0035461"},{"relation_name":"is_a","term_name":"amide transport","termid":"GO:0042886"},{"relation_name":"is_a","term_name":"modified amino acid transport","termid":"GO:0072337"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05175":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"pantothenate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pantothenate membrane transport","type":"exact"},{"name":"pantothenate transport","type":"exact"},{"name":"vitamin B5 transport","type":"exact"}],"termid":"GO:0015887","terms_by_termid":{"GO:0098717":null}}


id: PBO:0073921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 16 member 10","termid":"PBO:0073921"}


id: PBO:0079500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin like 4A","termid":"PBO:0079500"}


id: PBO:0048162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frizzled class receptor 7","termid":"PBO:0048162"}


id: FYPO:0005773
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetative cell is elongated, has no septum, and contains one nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated aseptate vegetative cell","termid":"FYPO:0000950"},{"relation_name":"is_a","term_name":"elongated mononucleate vegetative cell","termid":"FYPO:0001916"},{"relation_name":"is_a","term_name":"aseptate mononucleate vegetative cell","termid":"FYPO:0003785"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000032","FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"elongated mononucleate aseptate vegetative cell","synonyms":[{"name":"elongated aseptate mononucleate vegetative cell","type":"exact"},{"name":"elongated mononucleate aseptate cells during vegetative growth","type":"exact"},{"name":"elongated mononucleate aseptate vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005773"}


id: GO:0043190
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter.","definition_xrefs":["PMID:11421269","GOC:mtg_sensu","GOC:jl","PMID:15111107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATPase dependent transmembrane transport complex","termid":"GO:0098533"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"ATP-binding cassette (ABC) transporter complex","secondary_identifiers":["GO:0043192","GO:0043191"],"synonyms":[{"name":"ABC-type efflux permease complex","type":"narrow"},{"name":"ABC-type efflux porter complex","type":"narrow"},{"name":"ABC-type uptake permease complex","type":"narrow"},{"name":"mating pheromone exporter","type":"narrow"}],"termid":"GO:0043190"}


id: GO:0008814
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + citrate = acetate + (3S)-citryl-CoA.","definition_xrefs":["EC:2.8.3.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0016782","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"citrate CoA-transferase activity","secondary_identifiers":["RHEA:19405","MetaCyc:CITTRANS-RXN"],"synonyms":[{"name":"acetyl-CoA:citrate CoA-transferase activity","type":"related"}],"termid":"GO:0008814"}


id: GO:0042950
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of salicin (saligenin-beta-D-glucopyranoside), a glucoside of o-hydroxybenzylalcohol, from one side of a membrane to the other.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucoside transmembrane transporter activity","termid":"GO:0015573"},{"relation_name":"is_a","term_name":"alcohol transmembrane transporter activity","termid":"GO:0015665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"salicin transmembrane transporter activity","termid":"GO:0042950"}


id: GO:0051387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the neurotrophin TRK receptor signaling pathway.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of neurotrophin TRK receptor signaling pathway","termid":"GO:0051386"},{"relation_name":"is_a","term_name":"negative regulation of cellular response to growth factor stimulus","termid":"GO:0090288"},{"relation_name":"negatively_regulates","term_name":"neurotrophin TRK receptor signaling pathway","termid":"GO:0048011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of neurotrophin TRK receptor signaling pathway","synonyms":[{"name":"down regulation of nerve growth factor receptor signaling pathway","type":"exact"},{"name":"down-regulation of nerve growth factor receptor signaling pathway","type":"exact"},{"name":"downregulation of nerve growth factor receptor signaling pathway","type":"exact"},{"name":"inhibition of nerve growth factor receptor signaling pathway","type":"narrow"},{"name":"negative regulation of NGF receptor signaling pathway","type":"exact"},{"name":"negative regulation of NGF receptor signalling pathway","type":"exact"},{"name":"negative regulation of nerve growth factor receptor signaling pathway","type":"related"},{"name":"negative regulation of nerve growth factor receptor signalling pathway","type":"exact"}],"termid":"GO:0051387"}


id: PBO:0083714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein that plays a central role in ERAD; forms HRD complex with Hrd1p and ER-associated protein degradation (ERAD) determinants that engages in lumen to cytosol communication and coordination of ERAD events","termid":"PBO:0083714"}


id: GO:0052236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical on or near a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative chemotaxis on or near other organism involved in symbiotic interaction (obsolete GO:0052236)","synonyms":[{"name":"negative chemotaxis on or near other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052236"}


id: GO:0070819
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protoporphyrinogen IX + menaquinone = protoporphyrin IX + reduced menaquinone.","definition_xrefs":["GOC:mah","PMID:19583219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor","termid":"GO:0016635"},{"relation_name":"is_a","term_name":"protoporphyrinogen oxidase activity","termid":"GO:0070818"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"menaquinone-dependent protoporphyrinogen oxidase activity","secondary_identifiers":["EC:1.3.3.4"],"synonyms":[{"name":"protoporphyrinogen-IX:menaquinone oxidoreductase activity","type":"exact"}],"termid":"GO:0070819"}


id: PBO:0081130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP2 zinc finger protein","termid":"PBO:0081130"}


id: GO:1901012
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (S)-reticuline.","definition_xrefs":["GOC:TermGenie","GOC:yaf","PMID:22725256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzyl isoquinoline alkaloid biosynthetic process","termid":"GO:0009708"},{"relation_name":"is_a","term_name":"organic hydroxy compound biosynthetic process","termid":"GO:1901617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"(S)-reticuline biosynthetic process","synonyms":[{"name":"(S)-reticuline anabolism","type":"exact"},{"name":"(S)-reticuline biosynthesis","type":"exact"},{"name":"(S)-reticuline formation","type":"exact"},{"name":"(S)-reticuline synthesis","type":"exact"}],"termid":"GO:1901012"}


id: PBO:0005221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII cargo receptor subunit Sec23a (predicted)","termid":"PBO:0005221"}


id: PBO:0017966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF2 gamma subunit","termid":"PBO:0017966"}


id: FYPO:0003057
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of an RNA in a cell is abnormal. An RNA may be observed in a place where it is not normally found, absent from a place where it is normally found, or both.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"},{"relation_name":"is_a","term_name":"RNA localization phenotype","termid":"FYPO:0004853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal RNA localization","synonyms":[{"name":"abnormal RNA localisation","type":"exact"},{"name":"abnormal cellular RNA localisation","type":"exact"},{"name":"abnormal cellular RNA localization","type":"exact"}],"termid":"FYPO:0003057"}


id: PBO:0047567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 18","termid":"PBO:0047567"}


id: PBO:0035967
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mitotic_checkpoint_complex_level","termid":"PBO:0035967"}


id: GO:0061394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Modulation of the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance (obsolete GO:0061394)","termid":"GO:0061394"}


id: GO:0001318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Chemical reaction, between proteins and reactive oxygen species, that occurs in dividing cells as they age and leads to a variety of changes in the affected proteins, including increases in protein carbonyl content, oxidized methionine, protein hydrophobicity, and cross-linking.","definition_xrefs":["GOC:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete formation of oxidatively modified proteins involved in replicative cell aging (obsolete GO:0001318)","synonyms":[{"name":"formation of oxidatively modified proteins during replicative cell ageing","type":"related"},{"name":"formation of oxidatively modified proteins during replicative cell aging","type":"related"}],"termid":"GO:0001318"}


id: PBO:0086983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulatory subunit of trehalose-6-phosphate synthase/phosphatase; involved in synthesis of storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway; TPS3 has a paralog, TSL1, that arose from the whole genome duplication","termid":"PBO:0086983"}


id: PR:Q9UTK9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC144.17c gene.","definition_xrefs":["UniProtKB:Q9UTK9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase C144.17c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC144.17c","synonyms":[{"name":"Spom972h-SPAC144.17c","type":"exact"}],"termid":"PR:Q9UTK9"}


id: GO:0046617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of nucleolar expansion, as seen in Saccharomyces.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete nucleolar size increase (sensu Saccharomyces) (obsolete GO:0046617)","synonyms":[{"name":"nucleolar size increase (sensu Saccharomyces)","type":"exact"}],"termid":"GO:0046617"}


id: GO:0046130
data:
  {"annotated_genes":["SJAG_02959","SJAG_02580"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83623,83622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006154"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside catabolic process","termid":"GO:0006152"},{"relation_name":"is_a","term_name":"ribonucleoside catabolic process","termid":"GO:0042454"},{"relation_name":"is_a","term_name":"purine ribonucleoside metabolic process","termid":"GO:0046128"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02580":null,"SJAG_02959":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"purine ribonucleoside catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"purine ribonucleoside breakdown","type":"exact"},{"name":"purine ribonucleoside catabolism","type":"exact"},{"name":"purine ribonucleoside degradation","type":"exact"}],"termid":"GO:0046130","terms_by_termid":{"GO:0006154":null}}


id: PBO:0039838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 8","termid":"PBO:0039838"}


id: PBO:0089021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk6","termid":"PBO:0089021"}


id: PBO:0076326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptophysin like 1","termid":"PBO:0076326"}


id: PBO:0003612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM23 translocase complex subunit Tim50 (predicted)","termid":"PBO:0003612"}


id: PBO:0086548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YDR278C is not an essential gene","termid":"PBO:0086548"}


id: PBO:0027500
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_fluconazole","termid":"PBO:0027500"}


id: GO:0033312
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways leading to the formation of chlorophyll a, via the intermediate geranylgeranyl-chlorophyll a.","definition_xrefs":["GOC:mah","MetaCyc:PWY-5064"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorophyll a biosynthetic process","termid":"GO:0033305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"chlorophyll a biosynthetic process via geranylgeranyl-chlorophyll a","synonyms":[{"name":"chlorophyll a anabolism via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a biosynthesis via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a formation via geranylgeranyl-chlorophyll a","type":"exact"},{"name":"chlorophyll a synthesis via geranylgeranyl-chlorophyll a","type":"exact"}],"termid":"GO:0033312"}


id: GO:0099562
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process which maintains the organization and the arrangement of proteins in the presynaptic density.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of postsynaptic specialization structure","termid":"GO:0098880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of postsynaptic density structure","termid":"GO:0099562"}


id: PBO:0005857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Nsa2 (predicted)","termid":"PBO:0005857"}


id: FYPO:0000949
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell does not contain a septum.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"},{"relation_name":"output_of","term_name":"abolished septum assembly","termid":"FYPO:0000272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000032","FYPO:0001985","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"aseptate","synonyms":[{"name":"absent septum","type":"exact"},{"name":"aseptate during mitotic cell cycle","type":"related"},{"name":"aseptate during vegetative growth","type":"exact"}],"termid":"FYPO:0000949"}


id: SO:0001217
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that codes for an RNA that can be translated into a protein.","direct_ancestors":[{"relation_name":"has_quality","term_name":"protein_coding","termid":"SO:0000010"},{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein_coding_gene","synonyms":[{"name":"protein coding gene","type":"exact"}],"termid":"SO:0001217"}


id: PR:O42893
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ntp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neutral trehalase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC660.07","synonyms":[{"name":"Spom972h-ntp1","type":"exact"},{"name":"alpha,alpha-trehalase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"alpha,alpha-trehalose glucohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42893"}


id: GO:0052677
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-arabinitol + NADP+ = D-xylulose + NADPH + H+.","definition_xrefs":["EC:1.1.1.287"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"D-arabinitol dehydrogenase, D-xylulose forming (NADP+) activity","secondary_identifiers":["MetaCyc:RXN-7971","RHEA:21276","KEGG_REACTION:R07143"],"synonyms":[{"name":"ARD1p","type":"related"},{"name":"D-arabinitol dehydrogenase 1 activity","type":"broad"},{"name":"D-arabinitol:NADP+ dehydrogenase activity","type":"broad"},{"name":"NADP+-dependent D-arabinitol dehydrogenase activity","type":"broad"}],"termid":"GO:0052677"}


id: FYPO:0005520
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which nucleosome-dependent ATPase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal nucleosome-dependent ATPase activity","termid":"FYPO:0005519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000654","FYPO:0000652","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"abolished nucleosome-dependent ATPase activity","synonyms":[{"name":"nucleosome-dependent ATPase activity abolished","type":"exact"}],"termid":"FYPO:0005520"}


id: PBO:0066427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine-glutamic acid dipeptide repeats pseudogene 2 Y-linked","termid":"PBO:0066427"}


id: PBO:0068137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 444","termid":"PBO:0068137"}


id: PBO:0073837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 7 member 13","termid":"PBO:0073837"}


id: PBO:0003724
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.2.13","termid":"PBO:0003724"}


id: MOD:00887
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to a methylated aspartic acid, such as aspartic acid 4-methyl ester.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated aspartic acid","termid":"MOD:00887"}


id: GO:0061184
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the progression of the dermatome over time, from its initial formation to the mature structure. The dermatome is the portion of a somite that will form skin.","definition_xrefs":["GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of embryonic development","termid":"GO:0040019"},{"relation_name":"is_a","term_name":"regulation of dermatome development","termid":"GO:0061183"},{"relation_name":"positively_regulates","term_name":"dermatome development","termid":"GO:0061054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dermatome development","termid":"GO:0061184"}


id: PBO:0030016
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_actin_filaments","termid":"PBO:0030016"}


id: PBO:0081061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCHC-type containing 24","termid":"PBO:0081061"}


id: PBO:0004382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L36","termid":"PBO:0004382"}


id: PBO:0050086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group AT-hook 1 pseudogene 6","termid":"PBO:0050086"}


id: PBO:0059195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X2","termid":"PBO:0059195"}


id: GO:0043403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.","definition_xrefs":["GOC:ef","PMID:16607119","GOC:mtg_muscle","PMID:12021255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue regeneration","termid":"GO:0042246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal muscle tissue regeneration","synonyms":[{"name":"myofiber turnover","type":"related"}],"termid":"GO:0043403"}


id: PBO:0068752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U5E small nuclear 7, pseudogene","termid":"PBO:0068752"}


id: PBO:0090832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3-H4 chaperone Spt6","termid":"PBO:0090832"}


id: PBO:0052255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KDEL endoplasmic reticulum protein retention receptor 2","termid":"PBO:0052255"}


id: GO:0050519
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: apo-citrate lyase + 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA = diphosphate + holo-citrate lyase.","definition_xrefs":["EC:2.7.7.61","MetaCyc:2.7.7.61-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotidyltransferase activity","termid":"GO:0016779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016779"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016779","GO:0003824"],"is_obsolete":false,"name":"holo-citrate lyase synthase activity","secondary_identifiers":["RHEA:16333"],"synonyms":[{"name":"2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase activity","type":"related"},{"name":"2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase activity","type":"related"},{"name":"2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase adenylyltransferase activity","type":"related"},{"name":"CitX","type":"related"},{"name":"holo-ACP synthase activity","type":"related"}],"termid":"GO:0050519"}


id: GO:0170041
data:
  {"annotated_genes":["SJAG_02972","SJAG_04459","SJAG_03434","SJAG_04042","SJAG_01461","SJAG_02496","SJAG_03102","SJAG_00695","SJAG_03288","SJAG_04546","SJAG_00043","SJAG_03293","SJAG_00412","SJAG_03398","SJAG_00636","SJAG_00635","SJAG_04577","SJAG_02290","SJAG_01592","SJAG_01019","SJAG_00392","SJAG_00674","SJAG_04827","SJAG_03671"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94240,99554,114559,102630,94231,108057,107219,98720,106604],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042450"},{"annotations":[93415,109361],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019547"},{"annotations":[106605],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000053"},{"annotations":[94241],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019240"},{"annotations":[110904],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046436"},{"annotations":[110905],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019478"},{"annotations":[110906,83445],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046416"},{"annotations":[83638],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036088"},{"annotations":[110907],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902114"},{"annotations":[84457,83480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009450"},{"annotations":[87726],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009448"},{"annotations":[86057,98830],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050667"},{"annotations":[96755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019280"},{"annotations":[99709],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019281"},{"annotations":[110096],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019279"},{"annotations":[106646],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019283"},{"annotations":[108060],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006592"},{"annotations":[107315],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006591"},{"annotations":[84926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033387"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving non-proteingenic amino acids.","definition_xrefs":["GOC:ew"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid metabolic process","termid":"GO:0006520"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_00392":null,"SJAG_00412":null,"SJAG_00635":null,"SJAG_00636":null,"SJAG_00674":null,"SJAG_00695":null,"SJAG_01019":null,"SJAG_01461":null,"SJAG_01592":null,"SJAG_02290":null,"SJAG_02496":null,"SJAG_02972":null,"SJAG_03102":null,"SJAG_03288":null,"SJAG_03293":null,"SJAG_03398":null,"SJAG_03434":null,"SJAG_03671":null,"SJAG_04042":null,"SJAG_04459":null,"SJAG_04546":null,"SJAG_04577":null,"SJAG_04827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"non-proteinogenic amino acid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"non-proteinogenic amino acid metabolism","type":"exact"}],"termid":"GO:0170041","terms_by_termid":{"GO:0000053":null,"GO:0006591":null,"GO:0006592":null,"GO:0009448":null,"GO:0009450":null,"GO:0019240":null,"GO:0019279":null,"GO:0019280":null,"GO:0019281":null,"GO:0019283":null,"GO:0019478":null,"GO:0019547":null,"GO:0033387":null,"GO:0036088":null,"GO:0042450":null,"GO:0046416":null,"GO:0046436":null,"GO:0050667":null,"GO:1902114":null}}


id: GO:1900009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of extrachromosomal rDNA circle accumulation involved in replicative cell aging.","definition_xrefs":["PMID:15020466","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging (obsolete GO:1900009)","synonyms":[{"name":"positive regulation of extrachromosomal rDNA circle accumulation during replicative cell ageing","type":"related"},{"name":"positive regulation of extrachromosomal rDNA circle accumulation during replicative cell aging","type":"related"},{"name":"positive regulation of extrachromosomal ribosomal DNA circle accumulation during replicative cell aging","type":"related"},{"name":"up regulation of extrachromosomal rDNA circle accumulation during replicative cell ageing","type":"related"},{"name":"up regulation of extrachromosomal rDNA circle accumulation during replicative cell aging","type":"related"},{"name":"up regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging","type":"related"},{"name":"up regulation of extrachromosomal ribosomal DNA circle accumulation during replicative cell aging","type":"related"}],"termid":"GO:1900009"}


id: GO:0004662
data:
  {"annotated_genes":["SJAG_04923","SJAG_03029"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91774,91775,97482],"is_not":false,"summary":null,"term":"GO:0004662"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families.","definition_xrefs":["EC:2.5.1.59","PMID:8621375"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein geranylgeranyltransferase activity","termid":"GO:0004661"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03029":null,"SJAG_04923":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0003674","GO:0016740","GO:0016765"],"is_obsolete":false,"name":"CAAX-protein geranylgeranyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-3701"],"synonyms":[{"name":"GGTase-I activity","type":"exact"},{"name":"GGTaseI activity","type":"exact"},{"name":"geranylgeranyl-diphosphate:protein-cysteine geranyltransferase activity","type":"exact"},{"name":"geranylgeranyltransferase type I activity","type":"exact"},{"name":"protein geranylgeranyltransferase type I","type":"related"},{"name":"type I protein geranyl-geranyltransferase activity","type":"related"}],"termid":"GO:0004662","terms_by_termid":{"GO:0004662":null}}


id: PBO:0085965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; overexpression suppresses the lethality caused by a rad53 null mutation","termid":"PBO:0085965"}


id: GO:0035909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of an aorta are generated and organized. An aorta is an artery that carries blood from the heart to other parts of the body.","definition_xrefs":["MA:0000062","UBERON:0000947","Wikipedia:Aorta","GOC:bf","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"artery morphogenesis","termid":"GO:0048844"},{"relation_name":"part_of","term_name":"aorta development","termid":"GO:0035904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aorta morphogenesis","termid":"GO:0035909"}


id: GO:0006855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a xenobiotic, a compound foreign to the organism exposed to it, is transported across a membrane. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.","definition_xrefs":["GOC:krc","GOC:ai","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic transport","termid":"GO:0042908"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"xenobiotic transmembrane transport","synonyms":[{"name":"drug membrane transport","type":"exact"},{"name":"drug transmembrane transport","type":"related"},{"name":"multidrug transport","type":"related"}],"termid":"GO:0006855"}


id: PBO:0028586
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_actin_filament_bundle_assembly","termid":"PBO:0028586"}


id: FYPO:0004724
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form nuclear microtubules during interphase of the mitotic cell cycle that are longer than normal, and are partially or completely surrounded by an extension of the nuclear envelope. These microtubules usually have one end in close proximity to a spindle pole body, and may puncture the nuclear envelope to extent into the cytoplasm.","definition_xrefs":["PMID:15772152","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"nuclear envelope protrusion present during mitotic interphase","termid":"FYPO:0004725"},{"relation_name":"is_a","term_name":"long microtubules","termid":"FYPO:0000055"},{"relation_name":"is_a","term_name":"nuclear envelope protrusion present during mitotic interphase","termid":"FYPO:0004725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002399","FYPO:0001320","FYPO:0002403","FYPO:0005447","FYPO:0000054","FYPO:0000002"],"is_obsolete":false,"name":"long nuclear microtubules protruding through nuclear envelope during interphase","synonyms":[{"name":"long nuclear microtubules during interphase, with nuclear envelope deformation","type":"related"},{"name":"long nuclear microtubules during interphase, with nuclear envelope protrusion","type":"exact"},{"name":"long nuclear microtubules protruding through nuclear envelope at interphase","type":"exact"},{"name":"long nuclear microtubules protruding through nuclear envelope during interphase during mitotic cell cycle","type":"related"},{"name":"long nuclear microtubules protruding through nuclear envelope during interphase during vegetative growth","type":"exact"},{"name":"long nuclear microtubules protruding through nuclear envelope during mitotic interphase","type":"exact"},{"name":"nuclear envelope protrusion with long mitotic spindle microtubules protruding beyond SPB during interphase","type":"exact"},{"name":"nuclear envelope protrusion with long mitotic spindle microtubules protruding beyond spindle pole body during interphase","type":"exact"}],"termid":"FYPO:0004724"}


id: PBO:0050738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HSPE1-MOB4 readthrough","termid":"PBO:0050738"}


id: FYPO:0003567
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the insertion of the mitotic spindle pole body localization into the nuclear envelope is abnormal.","definition_xrefs":["PomBase:mah","PMID:24963130","PMID:19942852","GO:0140480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle pole body localization","termid":"FYPO:0000534"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle process","termid":"FYPO:0002737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0000631"],"is_obsolete":false,"name":"abnormal mitotic spindle pole body insertion into nuclear envelope","secondary_identifiers":["FYPO:0006595"],"synonyms":[{"name":"abnormal establishment of spindle pole body localization to nuclear envelope","type":"exact"},{"name":"abnormal mitotic SPB insertion into nuclear envelope","type":"exact"},{"name":"abnormal mitotic spindle pole body insertion into nuclear envelope during vegetative growth","type":"exact"},{"name":"abnormal mitotic spindle pole body localization to nuclear envelope","type":"related"},{"name":"abnormal spindle pole body insertion into nuclear envelope during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003567"}


id: PBO:0031859
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitosis","termid":"PBO:0031859"}


id: FYPO:0005790
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is curved along the long axis to form a \\\"J\\\" shape. In a curved cell, the long axis follows a smooth bend rather than a straight line. In a J-shaped cell, the curve is centered away from the midpoint of the long axis of the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"curved vegetative cell","termid":"FYPO:0000016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"J-shaped vegetative cell","synonyms":[{"name":"J-shaped cell","type":"exact"},{"name":"J-shaped cell during vegetative growth","type":"exact"},{"name":"J-shaped vegetative cell during mitotic cell cycle","type":"related"},{"name":"cell morphology, J-shaped","type":"exact"}],"termid":"FYPO:0005790"}


id: GO:0042624
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction is not directly coupled to any other reaction.","definition_xrefs":["PMID:12912988"],"gene_count":0,"genotype_count":0,"name":"obsolete ATPase activity, uncoupled (obsolete GO:0042624)","termid":"GO:0042624"}


id: _global:indirectly_regulates
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.","direct_ancestors":[{"relation_name":"is_a","term_name":"indirectly_causally_upstream_of","termid":"_global:indirectly_causally_upstream_of"},{"relation_name":"is_a","term_name":"regulates","termid":"_global:regulates"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"indirectly_regulates","secondary_identifiers":["RO:0012012"],"termid":"_global:indirectly_regulates"}


id: PBO:0000711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Moc3","termid":"PBO:0000711"}


id: GO:0002327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of an immature B cell.","definition_xrefs":["ISBN:0781735149","GOC:jal","PMID:16551251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell differentiation","termid":"GO:0030183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"immature B cell differentiation","synonyms":[{"name":"immature B cell development","type":"related"},{"name":"immature B lymphocyte differentiation","type":"exact"},{"name":"immature B-cell differentiation","type":"exact"},{"name":"immature B-lymphocyte differentiation","type":"exact"}],"termid":"GO:0002327"}


id: PR:000027580
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fungal histone H3.2, initiator methionine removed form in Schizosaccharomyces pombe.","definition_xrefs":["PMID:11242054","PMID:20929775","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3.2 (Schizosaccharomyces pombe)","termid":"PR:000027572"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3.2, initiator methionine removed form (Schizosaccharomyces pombe)","pombase_gene_id":"SPBC8D2.04","synonyms":[{"name":"Spom-hht2/InitMet-","type":"exact"}],"termid":"PR:000027580"}


id: GO:2001175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of histone H2B conserved C-terminal lysine ubiquitination.","definition_xrefs":["PMID:17576814"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H2B conserved C-terminal lysine ubiquitination (obsolete GO:2001175)","synonyms":[{"name":"positive regulation of budding yeast H2B K123 ubiquitination","type":"related"},{"name":"positive regulation of fission yeast H2B K119 ubiquitination","type":"related"},{"name":"positive regulation of mammalian H2B K120 ubiquitination","type":"related"}],"termid":"GO:2001175"}


id: PBO:0063751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHB1 pseudogene 16","termid":"PBO:0063751"}


id: PR:O94415
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04968","PANTHER:PTHR11815:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1620.08","secondary_identifiers":["UniProtKB:O94415"],"synonyms":[{"name":"SCS-beta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SUCLA2","type":"exact"},{"name":"succinyl-CoA synthetase beta chain (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94415"}


id: GO:0018073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of one or more bromine atoms to an amino acid residue in a protein.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete protein bromination (obsolete GO:0018073)","synonyms":[{"name":"protein amino acid bromination","type":"exact"}],"termid":"GO:0018073"}


id: GO:0004209
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete caspase-6 activity (obsolete GO:0004209)","synonyms":[{"name":"caspase-6 activity","type":"exact"}],"termid":"GO:0004209"}


id: GO:0031565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A mitotic cell cycle checkpoint that detects a defect in cytokinesis and negatively regulates G2/M transition.","definition_xrefs":["GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete cytokinesis checkpoint (obsolete GO:0031565)","synonyms":[{"name":"contractile ring checkpoint","type":"exact"},{"name":"septin checkpoint","type":"exact"}],"termid":"GO:0031565"}


id: PBO:0040435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase phospholipid transporting 8A2","termid":"PBO:0040435"}


id: PBO:0076258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"supervillin","termid":"PBO:0076258"}


id: PBO:0047313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAST kinase domains 2","termid":"PBO:0047313"}


id: PBO:0054058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1400","termid":"PBO:0054058"}


id: GO:0070981
data:
  {"annotated_genes":["SJAG_04549"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98257],"is_not":false,"summary":null,"term":"GO:0070981"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of asparagine, (2S)-2-amino-3-carbamoylpropanoic acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asparagine biosynthetic process","termid":"GO:0006529"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"L-asparagine metabolic process","termid":"GO:0070982"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04549":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"L-asparagine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"L-asparagine anabolism","type":"exact"},{"name":"L-asparagine biosynthesis","type":"exact"},{"name":"L-asparagine formation","type":"exact"},{"name":"L-asparagine synthesis","type":"exact"}],"termid":"GO:0070981","terms_by_termid":{"GO:0070981":null}}


id: PBO:0058498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5692a-1","termid":"PBO:0058498"}


id: PBO:0049971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIG1 hypoxia inducible domain family member 1A pseudogene 17","termid":"PBO:0049971"}


id: PBO:0067180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 238, pseudogene","termid":"PBO:0067180"}


id: GO:0014823
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an activity stimulus.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to stimulus","termid":"GO:0050896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to activity","synonyms":[{"name":"response to exercise","type":"related"}],"termid":"GO:0014823"}


id: PBO:0067996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 298","termid":"PBO:0067996"}


id: PBO:0002379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar import and degradation protein Vid28 (predicted)","termid":"PBO:0002379"}


id: GO:0051683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of the Golgi to a specific location.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi localization","termid":"GO:0051645"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"is_a","term_name":"establishment of organelle localization","termid":"GO:0051656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"establishment of Golgi localization","synonyms":[{"name":"establishment of Golgi apparatus localization","type":"exact"},{"name":"establishment of Golgi body localization","type":"exact"},{"name":"establishment of Golgi localisation","type":"exact"}],"termid":"GO:0051683"}


id: GO:1903646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of chaperone-mediated protein folding.","definition_xrefs":["GOC:TermGenie","PMID:24375412","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein folding","termid":"GO:1903334"},{"relation_name":"is_a","term_name":"regulation of chaperone-mediated protein folding","termid":"GO:1903644"},{"relation_name":"positively_regulates","term_name":"chaperone-mediated protein folding","termid":"GO:0061077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006457"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006457"}],"interesting_parent_ids":["GO:0006457","GO:0008150"],"is_obsolete":false,"name":"positive regulation of chaperone-mediated protein folding","synonyms":[{"name":"activation of chaperone-mediated protein folding","type":"narrow"},{"name":"up regulation of chaperone-mediated protein folding","type":"exact"},{"name":"up-regulation of chaperone-mediated protein folding","type":"exact"},{"name":"upregulation of chaperone-mediated protein folding","type":"exact"}],"termid":"GO:1903646"}


id: GO:1900264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of DNA-directed DNA polymerase activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transferase activity","termid":"GO:0051347"},{"relation_name":"is_a","term_name":"regulation of DNA-directed DNA polymerase activity","termid":"GO:1900262"},{"relation_name":"is_a","term_name":"positive regulation of DNA biosynthetic process","termid":"GO:2000573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006260","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"positive regulation of DNA-directed DNA polymerase activity","synonyms":[{"name":"activation of delta DNA polymerase activity","type":"narrow"},{"name":"activation of DNA duplicase activity","type":"exact"},{"name":"activation of DNA nucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"activation of DNA polymerase I","type":"narrow"},{"name":"activation of DNA polymerase II","type":"narrow"},{"name":"activation of DNA polymerase III","type":"narrow"},{"name":"activation of DNA polymerase V activity","type":"narrow"},{"name":"activation of DNA polymerase alpha","type":"narrow"},{"name":"activation of DNA polymerase beta","type":"narrow"},{"name":"activation of DNA polymerase gamma","type":"narrow"},{"name":"activation of DNA replicase activity","type":"exact"},{"name":"activation of DNA-dependent DNA polymerase activity","type":"exact"},{"name":"activation of DNA-directed DNA polymerase activity","type":"narrow"},{"name":"activation of Klenow fragment","type":"narrow"},{"name":"activation of Taq DNA polymerase","type":"narrow"},{"name":"activation of Taq Pol I","type":"narrow"},{"name":"activation of Tca DNA polymerase","type":"narrow"},{"name":"activation of alpha DNA polymerase activity","type":"narrow"},{"name":"activation of beta DNA polymerase activity","type":"narrow"},{"name":"activation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"activation of deoxyribonucleic acid duplicase activity","type":"exact"},{"name":"activation of deoxyribonucleic duplicase activity","type":"exact"},{"name":"activation of deoxyribonucleic polymerase I","type":"narrow"},{"name":"activation of duplicase","type":"broad"},{"name":"activation of epsilon DNA polymerase activity","type":"narrow"},{"name":"activation of eta DNA polymerase activity","type":"narrow"},{"name":"activation of gamma DNA-directed DNA polymerase activity","type":"narrow"},{"name":"activation of iota DNA polymerase activity","type":"narrow"},{"name":"activation of kappa DNA polymerase activity","type":"narrow"},{"name":"activation of lambda DNA polymerase activity","type":"narrow"},{"name":"activation of mu DNA polymerase activity","type":"narrow"},{"name":"activation of nu DNA polymerase activity","type":"narrow"},{"name":"activation of sequenase","type":"related"},{"name":"activation of sigma DNA polymerase activity","type":"narrow"},{"name":"activation of theta DNA polymerase activity","type":"narrow"},{"name":"activation of zeta DNA polymerase activity","type":"narrow"},{"name":"positive regulation of DNA duplicase activity","type":"exact"},{"name":"positive regulation of DNA nucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"positive regulation of DNA polymerase I","type":"narrow"},{"name":"positive regulation of DNA polymerase II","type":"narrow"},{"name":"positive regulation of DNA polymerase III","type":"narrow"},{"name":"positive regulation of DNA polymerase V activity","type":"narrow"},{"name":"positive regulation of DNA polymerase alpha","type":"narrow"},{"name":"positive regulation of DNA polymerase beta","type":"narrow"},{"name":"positive regulation of DNA polymerase gamma","type":"narrow"},{"name":"positive regulation of DNA replicase activity","type":"exact"},{"name":"positive regulation of DNA-dependent DNA polymerase activity","type":"exact"},{"name":"positive regulation of Klenow fragment","type":"narrow"},{"name":"positive regulation of Taq DNA polymerase","type":"narrow"},{"name":"positive regulation of Taq Pol I","type":"narrow"},{"name":"positive regulation of Tca DNA polymerase","type":"narrow"},{"name":"positive regulation of alpha DNA polymerase activity","type":"narrow"},{"name":"positive regulation of beta DNA polymerase activity","type":"narrow"},{"name":"positive regulation of delta DNA polymerase activity","type":"narrow"},{"name":"positive regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"positive regulation of deoxyribonucleic acid duplicase activity","type":"exact"},{"name":"positive regulation of deoxyribonucleic duplicase activity","type":"exact"},{"name":"positive regulation of deoxyribonucleic polymerase I","type":"narrow"},{"name":"positive regulation of duplicase","type":"broad"},{"name":"positive regulation of epsilon DNA polymerase activity","type":"narrow"},{"name":"positive regulation of eta DNA polymerase activity","type":"narrow"},{"name":"positive regulation of gamma DNA-directed DNA polymerase activity","type":"narrow"},{"name":"positive regulation of iota DNA polymerase activity","type":"narrow"},{"name":"positive regulation of kappa DNA polymerase activity","type":"narrow"},{"name":"positive regulation of lambda DNA polymerase activity","type":"narrow"},{"name":"positive regulation of mu DNA polymerase activity","type":"narrow"},{"name":"positive regulation of nu DNA polymerase activity","type":"narrow"},{"name":"positive regulation of sequenase","type":"related"},{"name":"positive regulation of sigma DNA polymerase activity","type":"narrow"},{"name":"positive regulation of theta DNA polymerase activity","type":"narrow"},{"name":"positive regulation of zeta DNA polymerase activity","type":"narrow"},{"name":"up regulation of DNA duplicase activity","type":"exact"},{"name":"up regulation of DNA nucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"up regulation of DNA polymerase I","type":"narrow"},{"name":"up regulation of DNA polymerase II","type":"narrow"},{"name":"up regulation of DNA polymerase III","type":"narrow"},{"name":"up regulation of DNA polymerase V activity","type":"narrow"},{"name":"up regulation of DNA polymerase alpha","type":"narrow"},{"name":"up regulation of DNA polymerase beta","type":"narrow"},{"name":"up regulation of DNA polymerase gamma","type":"narrow"},{"name":"up regulation of DNA replicase activity","type":"exact"},{"name":"up regulation of DNA-dependent DNA polymerase activity","type":"exact"},{"name":"up regulation of DNA-directed DNA polymerase activity","type":"exact"},{"name":"up regulation of Klenow fragment","type":"narrow"},{"name":"up regulation of Taq DNA polymerase","type":"narrow"},{"name":"up regulation of Taq Pol I","type":"narrow"},{"name":"up regulation of Tca DNA polymerase","type":"narrow"},{"name":"up regulation of alpha DNA polymerase activity","type":"narrow"},{"name":"up regulation of beta DNA polymerase activity","type":"narrow"},{"name":"up regulation of delta DNA polymerase activity","type":"narrow"},{"name":"up regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"up regulation of deoxyribonucleic acid duplicase activity","type":"exact"},{"name":"up regulation of deoxyribonucleic duplicase activity","type":"exact"},{"name":"up regulation of deoxyribonucleic polymerase I","type":"narrow"},{"name":"up regulation of duplicase","type":"broad"},{"name":"up regulation of epsilon DNA polymerase activity","type":"narrow"},{"name":"up regulation of eta DNA polymerase activity","type":"narrow"},{"name":"up regulation of gamma DNA-directed DNA polymerase activity","type":"narrow"},{"name":"up regulation of iota DNA polymerase activity","type":"narrow"},{"name":"up regulation of kappa DNA polymerase activity","type":"narrow"},{"name":"up regulation of lambda DNA polymerase activity","type":"narrow"},{"name":"up regulation of mu DNA polymerase activity","type":"narrow"},{"name":"up regulation of nu DNA polymerase activity","type":"narrow"},{"name":"up regulation of sequenase","type":"related"},{"name":"up regulation of sigma DNA polymerase activity","type":"narrow"},{"name":"up regulation of theta DNA polymerase activity","type":"narrow"},{"name":"up regulation of zeta DNA polymerase activity","type":"narrow"},{"name":"up-regulation of DNA duplicase activity","type":"exact"},{"name":"up-regulation of DNA nucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"up-regulation of DNA polymerase I","type":"narrow"},{"name":"up-regulation of DNA polymerase II","type":"narrow"},{"name":"up-regulation of DNA polymerase III","type":"narrow"},{"name":"up-regulation of DNA polymerase V activity","type":"narrow"},{"name":"up-regulation of DNA polymerase alpha","type":"narrow"},{"name":"up-regulation of DNA polymerase beta","type":"narrow"},{"name":"up-regulation of DNA polymerase gamma","type":"narrow"},{"name":"up-regulation of DNA replicase activity","type":"exact"},{"name":"up-regulation of DNA-dependent DNA polymerase activity","type":"exact"},{"name":"up-regulation of DNA-directed DNA polymerase activity","type":"exact"},{"name":"up-regulation of Klenow fragment","type":"narrow"},{"name":"up-regulation of Taq DNA polymerase","type":"narrow"},{"name":"up-regulation of Taq Pol I","type":"narrow"},{"name":"up-regulation of Tca DNA polymerase","type":"narrow"},{"name":"up-regulation of alpha DNA polymerase activity","type":"narrow"},{"name":"up-regulation of beta DNA polymerase activity","type":"narrow"},{"name":"up-regulation of delta DNA polymerase activity","type":"narrow"},{"name":"up-regulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"up-regulation of deoxyribonucleic acid duplicase activity","type":"exact"},{"name":"up-regulation of deoxyribonucleic duplicase activity","type":"exact"},{"name":"up-regulation of deoxyribonucleic polymerase I","type":"narrow"},{"name":"up-regulation of duplicase","type":"broad"},{"name":"up-regulation of epsilon DNA polymerase activity","type":"narrow"},{"name":"up-regulation of eta DNA polymerase activity","type":"narrow"},{"name":"up-regulation of gamma DNA-directed DNA polymerase activity","type":"narrow"},{"name":"up-regulation of iota DNA polymerase activity","type":"narrow"},{"name":"up-regulation of kappa DNA polymerase activity","type":"narrow"},{"name":"up-regulation of lambda DNA polymerase activity","type":"narrow"},{"name":"up-regulation of mu DNA polymerase activity","type":"narrow"},{"name":"up-regulation of nu DNA polymerase activity","type":"narrow"},{"name":"up-regulation of sequenase","type":"related"},{"name":"up-regulation of sigma DNA polymerase activity","type":"narrow"},{"name":"up-regulation of theta DNA polymerase activity","type":"narrow"},{"name":"up-regulation of zeta DNA polymerase activity","type":"narrow"},{"name":"upregulation of DNA duplicase activity","type":"exact"},{"name":"upregulation of DNA nucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"upregulation of DNA polymerase I","type":"narrow"},{"name":"upregulation of DNA polymerase II","type":"narrow"},{"name":"upregulation of DNA polymerase III","type":"narrow"},{"name":"upregulation of DNA polymerase V activity","type":"narrow"},{"name":"upregulation of DNA polymerase alpha","type":"narrow"},{"name":"upregulation of DNA polymerase beta","type":"narrow"},{"name":"upregulation of DNA polymerase gamma","type":"narrow"},{"name":"upregulation of DNA replicase activity","type":"exact"},{"name":"upregulation of DNA-dependent DNA polymerase activity","type":"exact"},{"name":"upregulation of DNA-directed DNA polymerase activity","type":"exact"},{"name":"upregulation of Klenow fragment","type":"narrow"},{"name":"upregulation of Taq DNA polymerase","type":"narrow"},{"name":"upregulation of Taq Pol I","type":"narrow"},{"name":"upregulation of Tca DNA polymerase","type":"narrow"},{"name":"upregulation of alpha DNA polymerase activity","type":"narrow"},{"name":"upregulation of beta DNA polymerase activity","type":"narrow"},{"name":"upregulation of delta DNA polymerase activity","type":"narrow"},{"name":"upregulation of deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity","type":"exact"},{"name":"upregulation of deoxyribonucleic acid duplicase activity","type":"exact"},{"name":"upregulation of deoxyribonucleic duplicase activity","type":"exact"},{"name":"upregulation of deoxyribonucleic polymerase I","type":"narrow"},{"name":"upregulation of duplicase","type":"broad"},{"name":"upregulation of epsilon DNA polymerase activity","type":"narrow"},{"name":"upregulation of eta DNA polymerase activity","type":"narrow"},{"name":"upregulation of gamma DNA-directed DNA polymerase activity","type":"narrow"},{"name":"upregulation of iota DNA polymerase activity","type":"narrow"},{"name":"upregulation of kappa DNA polymerase activity","type":"narrow"},{"name":"upregulation of lambda DNA polymerase activity","type":"narrow"},{"name":"upregulation of mu DNA polymerase activity","type":"narrow"},{"name":"upregulation of nu DNA polymerase activity","type":"narrow"},{"name":"upregulation of sequenase","type":"related"},{"name":"upregulation of sigma DNA polymerase activity","type":"narrow"},{"name":"upregulation of theta DNA polymerase activity","type":"narrow"},{"name":"upregulation of zeta DNA polymerase activity","type":"narrow"}],"termid":"GO:1900264"}


id: GO:0006199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete ADP reduction (obsolete GO:0006199)","synonyms":[{"name":"ADP reduction","type":"exact"}],"termid":"GO:0006199"}


id: PBO:0113509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Type 2C protein phosphatase (PP2C); dephosphorylates Hog1p, inactivating the osmosensing MAPK cascade; involved in Fus3p activation during pheromone response; deletion affects precursor tRNA splicing, mitochondrial inheritance, and sporulation; involved in myosin-V dependent inheritance of mitochondria, peroxisomes, vacuoles and secretory vesicles; localizes to the nucleus, cytoplasm and peroxisomes","termid":"PBO:0113509"}


id: PBO:0059811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 37","termid":"PBO:0059811"}


id: FYPO:0005754
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of (1->3)-alpha-D-glucan measured in the periplasmic space is greater than normal.","definition_xrefs":["PomBase:mah","PMID:11514435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased polysaccharide level during vegetative growth","termid":"FYPO:0001083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased (1->3)-alpha-D-glucan level in periplasmic space","synonyms":[{"name":"increased (1,3)alpha-D-glucan level in periplasmic space","type":"exact"},{"name":"increased (1->3)-alpha-D-glucan accumulation in periplasmic space","type":"related"},{"name":"increased (1->3)-alpha-D-glucan level in periplasmic space during mitotic cell cycle","type":"related"},{"name":"increased (1->3)-alpha-D-glucan level in periplasmic space during vegetative growth","type":"exact"},{"name":"increased 1,3-alpha-D-glucan level in periplasmic space","type":"exact"},{"name":"increased level of (1->3)-alpha-D-glucan in periplasmic space","type":"exact"}],"termid":"FYPO:0005754"}


id: PBO:0075318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOD1 divergent transcript","termid":"PBO:0075318"}


id: GO:0060719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the chorionic trophoblast over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate.","definition_xrefs":["CL:0011101","GOC:dph","GOC:16983341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell development","termid":"GO:0048468"},{"relation_name":"part_of","term_name":"chorionic trophoblast cell differentiation","termid":"GO:0060718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chorionic trophoblast cell development","termid":"GO:0060719"}


id: GO:0003314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the heart rudiment are generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"heart rudiment development","termid":"GO:0003313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"heart rudiment morphogenesis","synonyms":[{"name":"heart cone morphogenesis","type":"exact"}],"termid":"GO:0003314"}


id: PR:Q9UTB3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- deg1 gene.","definition_xrefs":["UniProtKB:Q9UTB3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA pseudouridine synthase C25B8.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25B8.05","synonyms":[{"name":"Spom972h-deg1","type":"exact"}],"termid":"PR:Q9UTB3"}


id: FYPO:0005041
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of the serine residue at position 2 within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah","GO:0071619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"},{"relation_name":"is_a","term_name":"abnormal RNA polymerase II C-terminal domain phosphorylation","termid":"FYPO:0007410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0002494","FYPO:0000002"],"is_obsolete":false,"name":"increased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during vegetative growth","synonyms":[{"name":"increased phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during mitotic cell cycle","type":"related"},{"name":"increased phosphorylation of RNA polymerase II CTD serine 2 residues during vegetative growth","type":"exact"}],"termid":"FYPO:0005041"}


id: PBO:0053854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1123","termid":"PBO:0053854"}


id: GO:0004217
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Specificity close to that of papain. As compared to cathepsin B, cathepsin L exhibits higher activity towards protein substrates, but has little activity on Z-Arg-Arg-NHMec, and no peptidyl-dipeptidase activity.","definition_xrefs":["EC:3.4.22.15"],"gene_count":0,"genotype_count":0,"name":"obsolete cathepsin L activity (obsolete GO:0004217)","synonyms":[{"name":"Aldrichina grahami cysteine proteinase","type":"narrow"},{"name":"cathepsin L activity","type":"exact"}],"termid":"GO:0004217"}


id: PBO:0029967
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_cell_cycle_regulation_during_cellular_response_to_gamma_radiation","termid":"PBO:0029967"}


id: PBO:0075995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STEAP2 antisense RNA 1","termid":"PBO:0075995"}


id: PBO:0051859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur cluster assembly 1 pseudogene 5","termid":"PBO:0051859"}


id: PBO:0090894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGEF for Rho1 Rgf2","termid":"PBO:0090894"}


id: GO:0140501
data:
  {"annotated_genes":["SJAG_04435"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85552],"is_not":false,"summary":null,"term":"GO:0140501"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of reticulophagy.","definition_xrefs":["PMID:32735772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of macroautophagy","termid":"GO:0016239"},{"relation_name":"is_a","term_name":"regulation of reticulophagy","termid":"GO:0140500"},{"relation_name":"positively_regulates","term_name":"reticulophagy","termid":"GO:0061709"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04435":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006914"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"positively_regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0006914","GO:0008150"],"is_obsolete":false,"name":"positive regulation of reticulophagy","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of ER autophagy","type":"exact"},{"name":"positive regulation of ER degradation","type":"related"},{"name":"positive regulation of ER-phagy","type":"exact"},{"name":"positive regulation of autophagy of the ER","type":"exact"},{"name":"positive regulation of autophagy of the endoplasmic reticulum","type":"exact"},{"name":"positive regulation of endoplasmic reticulum autophagy","type":"exact"},{"name":"positive regulation of endoplasmic reticulum degradation","type":"related"}],"termid":"GO:0140501","terms_by_termid":{"GO:0140501":null}}


id: PBO:0089982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanyl-nucleotide exchange factor, meiosis specific","termid":"PBO:0089982"}


id: PR:Q10203
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC17D1.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17D1.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17D1.05","synonyms":[{"name":"Spom972h-SPBC17D1.05","type":"exact"}],"termid":"PR:Q10203"}


id: GO:0000378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The RNA metabolic process that joins two exons, each of which has free ends that were generated by endonucleolytic cleavages, by a ligation reaction.","definition_xrefs":["GOC:krc","ISBN:0879695897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA metabolic process","termid":"GO:0016070"},{"relation_name":"part_of","term_name":"RNA splicing, via endonucleolytic cleavage and ligation","termid":"GO:0000394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"RNA exon ligation","termid":"GO:0000378"}


id: GO:0010282
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lytic vacuole that is maintained at acidic pH and has different tonoplast composition compared to the central vacuole. Found during leaf senescence and develops in the peripheral cytoplasm of cells that contain chloroplast.","definition_xrefs":["PMID:15743448"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lytic vacuole","termid":"GO:0000323"},{"relation_name":"is_a","term_name":"plant-type vacuole","termid":"GO:0000325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0005773","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"senescence-associated vacuole","synonyms":[{"name":"senescence associated vacuole","type":"exact"}],"termid":"GO:0010282"}


id: GO:0051473
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glucosylglycerol, alpha-D-glucopyranosyl-alpha-(1,2)-glycerol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside biosynthetic process","termid":"GO:0016138"},{"relation_name":"is_a","term_name":"alditol biosynthetic process","termid":"GO:0019401"},{"relation_name":"is_a","term_name":"glucosylglycerol metabolic process","termid":"GO:0051472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"glucosylglycerol biosynthetic process","synonyms":[{"name":"glucosylglycerol anabolism","type":"exact"},{"name":"glucosylglycerol biosynthesis","type":"exact"},{"name":"glucosylglycerol formation","type":"exact"},{"name":"glucosylglycerol synthesis","type":"exact"}],"termid":"GO:0051473"}


id: GO:0019512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of lactose, via the intermediate tagatose-6-phosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactose catabolic process","termid":"GO:0005990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"lactose catabolic process via tagatose-6-phosphate","secondary_identifiers":["MetaCyc:LACTOSECAT-PWY"],"synonyms":[{"name":"lactose breakdown via tagatose-6-phosphate","type":"exact"},{"name":"lactose degradation via tagatose-6-phosphate","type":"exact"}],"termid":"GO:0019512"}


id: PBO:0089337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi to ER retrograde transport protein","termid":"PBO:0089337"}


id: PBO:0088635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFIID, TFIIF, Ino80, SWI/SNF, and NuA4 complex YEATS family subunit Tfg3","termid":"PBO:0088635"}


id: PBO:0060382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Myb like, SWIRM and MPN domains 1","termid":"PBO:0060382"}


id: GO:0021628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the olfactory nerve. This process pertains to the initial formation of a structure from unspecified parts. The olfactory nerve is a collection of sensory nerve rootlets that extend down from the olfactory bulb to the olfactory mucosa of the upper parts of the nasal cavity. This nerve conducts odor information to the brainstem.","definition_xrefs":["GOC:cls","GOC:jid","ISBN:0838580343","GOC:dgh","GOC:dph","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve formation","termid":"GO:0021603"},{"relation_name":"part_of","term_name":"olfactory nerve morphogenesis","termid":"GO:0021627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olfactory nerve formation","synonyms":[{"name":"CN I biosynthesis","type":"related"},{"name":"CN I formation","type":"related"}],"termid":"GO:0021628"}


id: PBO:0075367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOX5 pseudogene 1","termid":"PBO:0075367"}


id: PBO:0069071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 318, pseudogene","termid":"PBO:0069071"}


id: PBO:0074291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLIT and NTRK like family member 6","termid":"PBO:0074291"}


id: PBO:0055097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2515","termid":"PBO:0055097"}


id: GO:0031684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular events that generate a signal through the activation of G-protein subunits and recycling of these subunits.","definition_xrefs":["GOC:nln"],"gene_count":0,"genotype_count":0,"name":"obsolete heterotrimeric G-protein complex cycle (obsolete GO:0031684)","termid":"GO:0031684"}


id: PBO:0027327
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_surface_pyruvylated_galactose_level","termid":"PBO:0027327"}


id: PBO:0049410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanylate cyclase 1 soluble subunit beta 1","termid":"PBO:0049410"}


id: PBO:0000171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,2-galactosyltransferase Gmh2 (predicted)","termid":"PBO:0000171"}


id: PBO:0065288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich transmembrane protein 3","termid":"PBO:0065288"}


id: PBO:0048017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM and PDZ domain containing 4","termid":"PBO:0048017"}


id: PBO:0042529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 5","termid":"PBO:0042529"}


id: GO:0015703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of chromate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transport","termid":"GO:0015698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"chromate transport","termid":"GO:0015703"}


id: FYPO:0006018
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell contains fewer nuclear pore complexes than normal.","definition_xrefs":["PMID:28242692","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased nuclear pore density","synonyms":[{"name":"decreased NPC density","type":"exact"},{"name":"decreased nuclear pore complex density","type":"exact"},{"name":"decreased nuclear pore density during mitotic cell cycle","type":"exact"},{"name":"decreased nuclear pore density during vegetative growth","type":"exact"},{"name":"nuclear pore complexes present in decreased number","type":"exact"},{"name":"nuclear pores present in decreased number","type":"exact"},{"name":"reduced nuclear pore density","type":"exact"}],"termid":"FYPO:0006018"}


id: PBO:0062978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PABPN1 like, cytoplasmic","termid":"PBO:0062978"}


id: PBO:0088974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall 1,3-beta-glucanosyltransferase Gas1","termid":"PBO:0088974"}


id: GO:0018555
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phenanthrene + NADH + H+ + O2 = NAD+ + cis-3,4-dihydroxy-3,4-dihydrophenanthrene.","definition_xrefs":["UM-BBD_reactionID:r0455"],"gene_count":0,"genotype_count":0,"name":"obsolete phenanthrene dioxygenase activity (obsolete GO:0018555)","termid":"GO:0018555"}


id: PBO:0062571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily B member 1 pseudogene","termid":"PBO:0062571"}


id: GO:0090307
data:
  {"annotated_genes":["SJAG_00794","SJAG_02336","SJAG_01613","SJAG_01224","SJAG_04841","SJAG_03540","SJAG_00773","SJAG_04745","SJAG_03116","SJAG_02609","SJAG_07018","SJAG_03835","SJAG_00244","SJAG_03073","SJAG_01215","SJAG_02246","SJAG_03062","SJAG_02761","SJAG_01297","SJAG_04901","SJAG_02332","SJAG_04464","SJAG_01546"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92838,92937,93355,96466,97072,105746,106723,111209,114840],"is_not":false,"summary":null,"term":"GO:0090307"},{"annotations":[91357,74498,90809],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000073"},{"annotations":[105161,99157,95303,92835],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990810"},{"annotations":[100016,93356,90814,94701,96468,97521,104393,95936],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061804"},{"annotations":[97522,95309],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140641"},{"annotations":[95310,97523,104986,90815,93357],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051256"},{"annotations":[107582],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0110161"},{"annotations":[107157],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1901673"}]},"cv_name":"biological_process","definition":"Mitotic bipolar spindle assembly begins with spindle microtubule nucleation from the separated spindle pole body, includes spindle elongation during prometaphase, and is complete when all kinetochores are stably attached the spindle, and the spindle assembly checkpoint is satisfied.","definition_xrefs":["GOC:vw","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic spindle organization","termid":"GO:0007052"},{"relation_name":"is_a","term_name":"spindle assembly","termid":"GO:0051225"},{"relation_name":"part_of","term_name":"mitotic sister chromatid segregation","termid":"GO:0000070"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00773":null,"SJAG_00794":null,"SJAG_01215":null,"SJAG_01224":null,"SJAG_01297":null,"SJAG_01546":null,"SJAG_01613":null,"SJAG_02246":null,"SJAG_02332":null,"SJAG_02336":null,"SJAG_02609":null,"SJAG_02761":null,"SJAG_03062":null,"SJAG_03073":null,"SJAG_03116":null,"SJAG_03540":null,"SJAG_03835":null,"SJAG_04464":null,"SJAG_04745":null,"SJAG_04841":null,"SJAG_04901":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000070"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007049","GO:0000070","GO:0000226","GO:0044085","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"mitotic spindle assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"spindle assembly involved in mitosis","type":"exact"}],"termid":"GO:0090307","terms_by_termid":{"GO:0000073":null,"GO:0051256":null,"GO:0061804":null,"GO:0090307":null,"GO:0110161":null,"GO:0140641":null,"GO:1901673":null,"GO:1990810":null}}


id: GO:0042820
data:
  {"annotated_genes":["SJAG_01543"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96956],"is_not":false,"summary":null,"term":"GO:0042820"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.","definition_xrefs":["GOC:jl","PMID:30037155","PMID:30671974"],"direct_ancestors":[{"relation_name":"is_a","term_name":"water-soluble vitamin catabolic process","termid":"GO:0042365"},{"relation_name":"is_a","term_name":"vitamin B6 metabolic process","termid":"GO:0042816"},{"relation_name":"is_a","term_name":"pyridine-containing compound catabolic process","termid":"GO:0072526"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01543":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0044281","GO:0006766","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"vitamin B6 catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"vitamin B6 breakdown","type":"exact"},{"name":"vitamin B6 catabolism","type":"exact"},{"name":"vitamin B6 degradation","type":"exact"}],"termid":"GO:0042820","terms_by_termid":{"GO:0042820":null}}


id: PBO:0016922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mug165","termid":"PBO:0016922"}


id: PBO:0026740
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_cell_cycle_regulation_during_cellular_response_to_rapamycin","termid":"PBO:0026740"}


id: GO:0072185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of the metanephric cap from an initial condition to its mature state. The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metanephric mesenchyme development","termid":"GO:0072075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric cap development","termid":"GO:0072185"}


id: PBO:0028014
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_meiotic_recombination_during_zygotic_meiosis","termid":"PBO:0028014"}


id: GO:0010347
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-galactose-1-phosphate + H2O = L-galactose + phosphate.","definition_xrefs":["PMID:15550539","PMID:16595667"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactose-1-phosphate phosphatase activity","termid":"GO:0070456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"L-galactose-1-phosphate phosphatase activity","secondary_identifiers":["MetaCyc:RXNQT-4142","RHEA:26349"],"termid":"GO:0010347"}


id: PBO:0071486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 27","termid":"PBO:0071486"}


id: PR:P0CT78
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1102 gene.","definition_xrefs":["UniProtKB:P0CT78","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L11-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17G9.10","synonyms":[{"name":"Spom972h-rpl1102","type":"exact"}],"termid":"PR:P0CT78"}


id: PBO:0054315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1707","termid":"PBO:0054315"}


id: PBO:0028876
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_M26_site","termid":"PBO:0028876"}


id: PBO:0113230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH-dependent short-chain aldehyde reductase; involved in detoxification of furfural; expression is upregulated in cells treated with the aldehydes furfural and glycolaldehyde, the mycotoxin patulin, and also the quinone methide triterpene celastrol; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm","termid":"PBO:0113230"}


id: PBO:0113244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclease required for DNA single- and double-strand break repair; acts at a post-incision step in repair of breaks that result from interstrand cross-links produced by a variety of mono- and bi-functional psoralen derivatives; induced by UV-irradiation; forms nuclear foci upon DNA replication stress; translocates to mitochondria under genotoxic agents","termid":"PBO:0113244"}


id: GO:2000915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glucuronoxylan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of xylan catabolic process","termid":"GO:2001000"},{"relation_name":"regulates","term_name":"glucuronoxylan catabolic process","termid":"GO:2000886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of glucuronoxylan catabolic process","synonyms":[{"name":"regulation of glucuronoxylan catabolism","type":"exact"}],"termid":"GO:2000915"}


id: GO:0008230
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric complex containing the products of the insect genes Ecdysone receptor (EcR) and ultraspiracle (usp). Binding of ecdysone promotes association between the two subunits, and the receptor complex then initiates molting and metamorphosis by binding DNA and regulating the transcription of target genes.","definition_xrefs":["PMID:14592980","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"ecdysone receptor holocomplex","termid":"GO:0008230"}


id: PBO:0112993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Adenosine 5'-monophosphoramidase; interacts physically and genetically with CDK and TFIIK subunit Kin28p, and genetically with CAK1; member of histidine triad (HIT) superfamily of nucleotide-binding proteins; protein abundance increases in response to DNA replication stress; human homolog HINT1 can complement yeast hnt1 mutant","termid":"PBO:0112993"}


id: PBO:0039177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A-kinase anchoring protein 8 like","termid":"PBO:0039177"}


id: PBO:0090480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, oxidative stress-responsive Pap1/Caf3","termid":"PBO:0090480"}


id: PBO:0052056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysyl-tRNA synthetase 1","termid":"PBO:0052056"}


id: PBO:0076165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfotransferase family 1A member 1","termid":"PBO:0076165"}


id: PBO:0075794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine and arginine rich splicing factor 12","termid":"PBO:0075794"}


id: SO:0002320
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that leads to a change in the location of a termination codon in a transcript but allows the transcript to escape nonsense-mediated decay (NMD). The change in location of a termination codon can be caused by several different types of sequence variants, including stop_gained (SO:0001587), frameshift_variant (SO:0001589), splice_donor_variant (SO:0001575), and splice_acceptor_variant (SO:0001574) types of variants.","definition_xrefs":["GenCC:AR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_abnormal","termid":"SO:0002218"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMD_escaping_variant","synonyms":[{"name":"NMD escaping variant","type":"exact"},{"name":"nonsense-mediated decay escaping variant","type":"exact"}],"termid":"SO:0002320"}


id: PBO:0074753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 112","termid":"PBO:0074753"}


id: GO:0032974
data:
  {"annotated_genes":["SJAG_03400","SJAG_03899","SJAG_00051"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92079],"is_not":false,"summary":null,"term":"GO:0032974"},{"annotations":[86425],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034488"},{"annotations":[93426],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990818"},{"annotations":[93427],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089708"},{"annotations":[93428],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089707"}]},"cv_name":"biological_process","definition":"The directed movement of amino acids out of the vacuole, across the vacuolar membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"vacuolar transmembrane transport","termid":"GO:0034486"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00051":null,"SJAG_03400":null,"SJAG_03899":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"amino acid transmembrane export from vacuole","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"amino acid efflux from vacuole","type":"exact"},{"name":"vacuolar amino acid export","type":"exact"}],"termid":"GO:0032974","terms_by_termid":{"GO:0032974":null,"GO:0034488":null,"GO:0089707":null,"GO:0089708":null,"GO:1990818":null}}


id: GO:1904217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of CDP-diacylglycerol-serine O-phosphatidyltransferase activity.","definition_xrefs":["PMID:16120614","GO_REF:0000059","GOC:BHF","GOC:rl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transferase activity","termid":"GO:0051338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity","synonyms":[{"name":"regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDP-diglyceride:serine phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of PS synthase activity","type":"exact"},{"name":"regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of phosphatidylserine synthase activity","type":"exact"},{"name":"regulation of phosphatidylserine synthetase activity","type":"exact"},{"name":"regulation of serine exchange enzyme","type":"broad"}],"termid":"GO:1904217"}


id: PBO:0087000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho-family GTPase interacting protein and Cdc42p effector; required with Gic1p for cell polarity establishment and initiation of budding; involved in recruitment of septins to the presumptive bud site; interacts with Cdc42p via the Cdc42/Rac-interactive binding (CRIB) domain and with PI(4,5)P2 via a polybasic region; gic1 gic2 double mutants are defective for polarizing Cdc42p at elevated temperature, so may function both up- and downstream of Cdc42p; regulates mitotic exit","termid":"PBO:0087000"}


id: PBO:0070404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RP9 pseudogene","termid":"PBO:0070404"}


id: CHEBI:44423
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxyurea","termid":"CHEBI:44423"}


id: GO:0052871
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-alpha-tocopherol + O2 + reduced [NADPH--hemoprotein reductase] = 13-hydroxy-alpha-tocopherol + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:45108"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"alpha-tocopherol omega-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-11003"],"synonyms":[{"name":"alpha-tocopherol 13-hydroxylase activity","type":"exact"}],"termid":"GO:0052871"}


id: GO:2001297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of N(omega)-methyl-L-arginine.","definition_xrefs":["PMID:10510241","GOC:rs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular modified amino acid catabolic process","termid":"GO:0042219"},{"relation_name":"is_a","term_name":"L-amino acid catabolic process","termid":"GO:0170035"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid catabolic process","termid":"GO:0170044"},{"relation_name":"is_a","term_name":"N(omega)-methyl-L-arginine metabolic process","termid":"GO:2001296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"N(omega)-methyl-L-arginine catabolic process","synonyms":[{"name":"N(omega)-methyl-L-arginine breakdown","type":"exact"},{"name":"N(omega)-methyl-L-arginine catabolism","type":"exact"},{"name":"N(omega)-methyl-L-arginine degradation","type":"exact"}],"termid":"GO:2001297"}


id: PBO:0091692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-methyltransferase, human COMT catechol homolog 1","termid":"PBO:0091692"}


id: PBO:0067683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 870, pseudogene","termid":"PBO:0067683"}


id: GO:0005525
data:
  {"annotated_genes":["SJAG_01215","SJAG_00044","SJAG_00360","SJAG_00424","SJAG_04509","SJAG_04940","SJAG_00801","SJAG_05030","SJAG_03453","SJAG_02848","SJAG_04387","SJAG_02601","SJAG_00906","SJAG_04666","SJAG_02353","SJAG_05332","SJAG_01774","SJAG_01358","SJAG_02292","SJAG_03371","SJAG_00414","SJAG_01929","SJAG_04233","SJAG_02444","SJAG_03959","SJAG_00226","SJAG_04862","SJAG_01379","SJAG_01456","SJAG_00031","SJAG_03275","SJAG_02520","SJAG_03072","SJAG_02604","SJAG_01438","SJAG_03374","SJAG_02171","SJAG_00983","SJAG_04004","SJAG_04366","SJAG_02509","SJAG_04874","SJAG_02384","SJAG_00457","SJAG_03188","SJAG_00430","SJAG_03688","SJAG_01851","SJAG_00118","SJAG_00231","SJAG_01277","SJAG_04375","SJAG_03342","SJAG_04470","SJAG_04003","SJAG_04351","SJAG_02366","SJAG_02684","SJAG_03461","SJAG_01695","SJAG_01696","SJAG_02605","SJAG_00968","SJAG_04157","SJAG_01534","SJAG_00344","SJAG_02640","SJAG_02302","SJAG_01789","SJAG_01558","SJAG_00659","SJAG_02661","SJAG_02331","SJAG_04343","SJAG_01909","SJAG_01449","SJAG_00663","SJAG_01339","SJAG_00840","SJAG_02656","SJAG_00466","SJAG_03846","SJAG_02180","SJAG_03137","SJAG_02824","SJAG_01769","SJAG_01391","SJAG_03732","SJAG_02856","SJAG_02233","SJAG_03684","SJAG_02595","SJAG_03915"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[60512,83939,84920,85275,85472,85768,86334,86884,87108,87321,87949,88008,88043,88452,88734,88827,88899,89294,89434,89488,89638,89639,89640,89889,90273,90322,90370,90547,91276,91816,92337,92569,93135,93818,93970,94376,94377,94461,95721,95797,96045,96200,96746,96935,97047,97325,97373,97536,97855,98728,98754,98872,98989,99604,99782,100038,100130,100718,100771,101018,101175,101536,102128,102665,103264,103303,103324,103559,103567,104602,104837,104865,104988,105401,105464,105892,106408,106674,106681,106682,106983,107591,107673,108284,108554,108555,108556,109023,109691,112103,112140,112256,112793,113506,113670,113675,113676,114542,114651,114652,114653,115135,115136],"is_not":false,"summary":null,"term":"GO:0005525"}]},"cv_name":"molecular_function","definition":"Binding to GTP, guanosine triphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanyl ribonucleotide binding","termid":"GO:0032561"},{"relation_name":"is_a","term_name":"purine ribonucleoside triphosphate binding","termid":"GO:0035639"}],"gene_count":93,"genes_by_uniquename":{"SJAG_00031":null,"SJAG_00044":null,"SJAG_00118":null,"SJAG_00226":null,"SJAG_00231":null,"SJAG_00344":null,"SJAG_00360":null,"SJAG_00414":null,"SJAG_00424":null,"SJAG_00430":null,"SJAG_00457":null,"SJAG_00466":null,"SJAG_00659":null,"SJAG_00663":null,"SJAG_00801":null,"SJAG_00840":null,"SJAG_00906":null,"SJAG_00968":null,"SJAG_00983":null,"SJAG_01215":null,"SJAG_01277":null,"SJAG_01339":null,"SJAG_01358":null,"SJAG_01379":null,"SJAG_01391":null,"SJAG_01438":null,"SJAG_01449":null,"SJAG_01456":null,"SJAG_01534":null,"SJAG_01558":null,"SJAG_01695":null,"SJAG_01696":null,"SJAG_01769":null,"SJAG_01774":null,"SJAG_01789":null,"SJAG_01851":null,"SJAG_01909":null,"SJAG_01929":null,"SJAG_02171":null,"SJAG_02180":null,"SJAG_02233":null,"SJAG_02292":null,"SJAG_02302":null,"SJAG_02331":null,"SJAG_02353":null,"SJAG_02366":null,"SJAG_02384":null,"SJAG_02444":null,"SJAG_02509":null,"SJAG_02520":null,"SJAG_02595":null,"SJAG_02601":null,"SJAG_02604":null,"SJAG_02605":null,"SJAG_02640":null,"SJAG_02656":null,"SJAG_02661":null,"SJAG_02684":null,"SJAG_02824":null,"SJAG_02848":null,"SJAG_02856":null,"SJAG_03072":null,"SJAG_03137":null,"SJAG_03188":null,"SJAG_03275":null,"SJAG_03342":null,"SJAG_03371":null,"SJAG_03374":null,"SJAG_03453":null,"SJAG_03461":null,"SJAG_03684":null,"SJAG_03688":null,"SJAG_03732":null,"SJAG_03846":null,"SJAG_03915":null,"SJAG_03959":null,"SJAG_04003":null,"SJAG_04004":null,"SJAG_04157":null,"SJAG_04233":null,"SJAG_04343":null,"SJAG_04351":null,"SJAG_04366":null,"SJAG_04375":null,"SJAG_04387":null,"SJAG_04470":null,"SJAG_04509":null,"SJAG_04666":null,"SJAG_04862":null,"SJAG_04874":null,"SJAG_04940":null,"SJAG_05030":null,"SJAG_05332":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"GTP binding","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-167429"],"termid":"GO:0005525","terms_by_termid":{"GO:0005525":null}}


id: GO:0015036
data:
  {"annotated_genes":["SJAG_04953","SJAG_03414","SJAG_04046","SJAG_01038","SJAG_00288","SJAG_01199","SJAG_04399","SJAG_01417","SJAG_01647","SJAG_01162","SJAG_04539","SJAG_02489","SJAG_03653","SJAG_04632","SJAG_01292","SJAG_00822","SJAG_00614","SJAG_02827","SJAG_02495","SJAG_00196","SJAG_00489","SJAG_03992"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114577],"is_not":false,"summary":null,"term":"GO:0015036"},{"annotations":[93204,99294],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016971"},{"annotations":[85436,97697,103546,110901,94023],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015038"},{"annotations":[101341],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004362"},{"annotations":[102913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047134"},{"annotations":[85438,96087,110941,107288,94568,86920,97698,84651,88336,98969,106971,113553],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015035"},{"annotations":[110942,106972,94569],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016972"},{"annotations":[106231,78056],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004791"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors","termid":"GO:0016667"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00196":null,"SJAG_00288":null,"SJAG_00489":null,"SJAG_00614":null,"SJAG_00822":null,"SJAG_01038":null,"SJAG_01162":null,"SJAG_01199":null,"SJAG_01292":null,"SJAG_01417":null,"SJAG_01647":null,"SJAG_02489":null,"SJAG_02495":null,"SJAG_02827":null,"SJAG_03414":null,"SJAG_03653":null,"SJAG_03992":null,"SJAG_04046":null,"SJAG_04399":null,"SJAG_04539":null,"SJAG_04632":null,"SJAG_04953":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"disulfide oxidoreductase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1222690","Reactome:R-HSA-1222417","Reactome:R-HSA-1222655","Reactome:R-HSA-1222644"],"synonyms":[{"name":"disulphide oxidoreductase activity","type":"exact"}],"termid":"GO:0015036","terms_by_termid":{"GO:0004362":null,"GO:0004791":null,"GO:0015035":null,"GO:0015036":null,"GO:0015038":null,"GO:0016971":null,"GO:0016972":null,"GO:0047134":null}}


id: PBO:0069474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 741, pseudogene","termid":"PBO:0069474"}


id: FYPO:0003220
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at positions 9 and 14 of histone H3 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete normal histone H3-K9K14 acetylation during vegetative growth (obsolete FYPO:0003220)","synonyms":[{"name":"normal histone H3 K9K14 acetylation during vegetative growth","type":"exact"},{"name":"normal histone H3-K9 and K14 acetylation during vegetative growth","type":"exact"},{"name":"normal histone H3-K9K14 acetylation during mitotic cell cycle","type":"related"},{"name":"normal histone lysine H3 K9K14 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0003220"}


id: FYPO:0000364
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the plasma membrane is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal plasma membrane during vegetative growth","termid":"FYPO:0003278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal plasma membrane morphology during vegetative growth","synonyms":[{"name":"abnormal plasma membrane morphology during mitotic cell cycle","type":"related"},{"name":"plasma membrane morphology: abnormal","type":"related"}],"termid":"FYPO:0000364"}


id: GO:0106334
data:
  {"annotated_genes":["SJAG_04418"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[115117],"is_not":false,"summary":null,"term":"GO:0106334"}]},"cv_name":"molecular_function","definition":"Catalysis of the conversion of a 3'-deoxyribose phosphate in DNA to a 3'-phosphate.","definition_xrefs":["PMID:21276450","PMID:22084197","PMID:22375014","GOC:mah","RHEA:65764"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lyase activity","termid":"GO:0016829"},{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04418":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140097","GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"3'-deoxyribose phosphate lyase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"3'-dRP lyase","type":"related"},{"name":"3'-dRP lyase activity","type":"related"}],"termid":"GO:0106334","terms_by_termid":{"GO:0106334":null}}


id: PBO:0052819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 85","termid":"PBO:0052819"}


id: PR:Q10351
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gpi17 gene.","definition_xrefs":["UniProtKB:Q10351","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI transamidase component PIG-S homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F12.09","synonyms":[{"name":"Spom972h-gpi17","type":"exact"}],"termid":"PR:Q10351"}


id: FYPO:0002456
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, is curved along the long axis, and contains one or more abnormal septa. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"abnormal septum during vegetative growth","termid":"FYPO:0002455"},{"relation_name":"is_a","term_name":"viable curved vegetative cell","termid":"FYPO:0002112"},{"relation_name":"is_a","term_name":"abnormal septum during vegetative growth","termid":"FYPO:0002455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0000004","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"viable curved vegetative cell with abnormal septum","synonyms":[{"name":"curved viable cell with abnormal septum","type":"exact"},{"name":"viable curved abnormally septated vegetative cell","type":"exact"},{"name":"viable curved cell with abnormal septum during vegetative growth","type":"exact"},{"name":"viable curved vegetative cell with abnormal septum during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002456"}


id: PBO:0074667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 53","termid":"PBO:0074667"}


id: PBO:0059156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallophosphoesterase 1 pseudogene 1","termid":"PBO:0059156"}


id: PBO:0079079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-iMet (anticodon CAT) 1-7","termid":"PBO:0079079"}


id: PBO:0085508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S11 and bacterial S17; N-terminally propionylated in vivo; RPS11A has a paralog, RPS11B, that arose from the whole genome duplication","termid":"PBO:0085508"}


id: GO:0000270
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving peptidoglycans, any of a class of glycoconjugates found only in bacterial cell walls and consisting of strands of glycosaminoglycan cross-linked by oligopeptides to form a huge and rigid network.","definition_xrefs":["PMID:33139480","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosaminoglycan metabolic process","termid":"GO:0030203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidoglycan metabolic process","secondary_identifiers":["GO:0009284"],"synonyms":[{"name":"murein metabolic process","type":"exact"},{"name":"murein metabolism","type":"exact"},{"name":"peptidoglycan metabolism","type":"exact"}],"termid":"GO:0000270"}


id: GO:0046117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside catabolic process","termid":"GO:0042454"},{"relation_name":"is_a","term_name":"queuosine metabolic process","termid":"GO:0046116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"queuosine catabolic process","synonyms":[{"name":"queuosine breakdown","type":"exact"},{"name":"queuosine catabolism","type":"exact"},{"name":"queuosine degradation","type":"exact"}],"termid":"GO:0046117"}


id: PBO:0030684
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-tapered_vegetative_cell","termid":"PBO:0030684"}


id: PR:Q9US22
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1502 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9US22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L15-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1783.08c","synonyms":[{"name":"Spom972h-rpl1502","type":"exact"}],"termid":"PR:Q9US22"}


id: PBO:0061573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurotrophin 6 alpha (pseudogene)","termid":"PBO:0061573"}


id: GO:0097140
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex consisting of BIM and BCL-xl, members of the Bcl-2 family of anti- and proapoptotic regulators.","definition_xrefs":["GOC:so","PMID:14634621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bcl-2 family protein complex","termid":"GO:0097136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"BIM-BCL-xl complex","termid":"GO:0097140"}


id: GO:0045112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of integrins, a large family of transmembrane proteins that act as receptors for cell-adhesion molecules.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule biosynthetic process","termid":"GO:0009059"},{"relation_name":"part_of","term_name":"plasma membrane organization","termid":"GO:0007009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"integrin biosynthetic process","synonyms":[{"name":"integrin anabolism","type":"exact"},{"name":"integrin biosynthesis","type":"exact"},{"name":"integrin formation","type":"exact"},{"name":"integrin synthesis","type":"exact"}],"termid":"GO:0045112"}


id: GO:0016114
data:
  {"annotated_genes":["SJAG_04499","SJAG_04307","SJAG_00580","SJAG_03715","SJAG_04865","SJAG_00413","SJAG_03352","SJAG_01474","SJAG_04568","SJAG_03360","SJAG_00624","SJAG_03349"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109903,84732,94112,90484,97966,105613,95675,111062,102640,92654],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010142"},{"annotations":[95676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033384"},{"annotations":[105614],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033386"},{"annotations":[65786,84768],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016104"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid metabolic process","termid":"GO:0006721"},{"relation_name":"is_a","term_name":"isoprenoid biosynthetic process","termid":"GO:0008299"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00413":null,"SJAG_00580":null,"SJAG_00624":null,"SJAG_01474":null,"SJAG_03349":null,"SJAG_03352":null,"SJAG_03360":null,"SJAG_03715":null,"SJAG_04307":null,"SJAG_04499":null,"SJAG_04568":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"terpenoid biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Terpenoid"],"synonyms":[{"name":"terpenoid anabolism","type":"exact"},{"name":"terpenoid biosynthesis","type":"exact"},{"name":"terpenoid formation","type":"exact"},{"name":"terpenoid synthesis","type":"exact"}],"termid":"GO:0016114","terms_by_termid":{"GO:0010142":null,"GO:0016104":null,"GO:0033384":null,"GO:0033386":null}}


id: GO:1905701
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of xenobiotic transmembrane export. A xenobiotic is a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.","definition_xrefs":["GOC:TermGenie","PMID:15198509","GO_REF:0000058","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of xenobiotic detoxification by transmembrane export across the plasma membrane","termid":"GO:1905699"},{"relation_name":"positively_regulates","term_name":"xenobiotic detoxification by transmembrane export across the plasma membrane","termid":"GO:1990961"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of xenobiotic detoxification by transmembrane export across the plasma membrane","synonyms":[{"name":"activation of drug transmembrane export","type":"narrow"},{"name":"positive regulation of drug transmembrane export","type":"narrow"},{"name":"positive regulation of xenobiotic transmembrane export","type":"narrow"},{"name":"up regulation of drug transmembrane export","type":"narrow"},{"name":"up-regulation of drug transmembrane export","type":"narrow"},{"name":"upregulation of drug transmembrane export","type":"narrow"}],"termid":"GO:1905701"}


id: PBO:0058232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4521","termid":"PBO:0058232"}


id: GO:0070512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 20 of histone H4.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H4-K20 methylation (obsolete GO:0070512)","synonyms":[{"name":"activation of histone H4-K20 methylation","type":"narrow"},{"name":"stimulation of histone H4-K20 methylation","type":"narrow"},{"name":"up regulation of histone H4-K20 methylation","type":"exact"},{"name":"up-regulation of histone H4-K20 methylation","type":"exact"},{"name":"upregulation of histone H4-K20 methylation","type":"exact"}],"termid":"GO:0070512"}


id: MOD:01670
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-methyl-L-lysine.","definition_xrefs":["RESID:AA0524","PubMed:16195462","PubMed:17260957","PubMed:16091367"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"},{"relation_name":"is_a","term_name":"halogenated lysine","termid":"MOD:01672"},{"relation_name":"is_a","term_name":"monochlorinated residue","termid":"MOD:01911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6-chloro-L-lysine","synonyms":[{"name":"(2S)-2-amino-6-(chloroamino)hexanoic acid","type":"exact"},{"name":"N(zeta)-chlorolysine","type":"exact"},{"name":"N6-chloro-L-lysine","type":"exact"},{"name":"N6ClLys","type":"exact"},{"name":"epsilon-chlorolysine","type":"exact"},{"name":"lysine chloramine","type":"exact"}],"termid":"MOD:01670"}


id: PATO:0000182
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000182 abdominal tone (obsolete PATO:0000182)","termid":"PATO:0000182"}


id: PBO:0068040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 345","termid":"PBO:0068040"}


