# genes

id: SJAG_02122
data:
  {"cv_annotations":{},"dbxrefs":["UniProtKB/TrEMBL:B6K1L1","EnsemblGenomes-Tr:EEB07042","EnsemblGenomes-Gn:SJAG_02122"],"deletion_viability":"unknown","disordered_region_coords":[[1,2],[38,39],[50,57]],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"tre1","uniquename":"SJAG_02117"},{"uniquename":"SJAG_02118"},{"name":"raf2","uniquename":"SJAG_02119"},{"name":"erv29","uniquename":"SJAG_02120"},{"name":"rpl36a","uniquename":"SJAG_02121"},{"uniquename":"SJAG_02122"},{"uniquename":"SJAG_06598"},{"uniquename":"SJAG_06599"},{"uniquename":"SJAG_02938"},{"uniquename":"SJAG_02940"},{"uniquename":"SJAG_02941"}],"genes_by_uniquename":{"SJAG_02122":null},"has_protein_features":true,"location":{"chromosome_name":"supercont5.2","end_pos":51365,"start_pos":51062,"strand":"forward"},"low_complexity_region_coords":[[3,75]],"product":"Schizosaccharomyces japonicus specific low-complexity Glycine rich protein","taxonid":4897,"taxonomic_distribution":"other","transcript_so_termid":"SO:0000234","transcripts":["SJAG_02122.1"],"transcripts_by_uniquename":{"SJAG_02122.1":null},"uniprot_identifier":"B6K1L1","uniquename":"SJAG_02122"}


id: SJAG_02124
data:
  {"cv_annotations":{},"dbxrefs":["InterPro:IPR011629","InterPro:IPR027417","EnsemblGenomes-Gn:SJAG_02124","UniProtKB/TrEMBL:B6K1L3","EnsemblGenomes-Tr:EEB07044","InterPro:IPR003495"],"deletion_viability":"unknown","disordered_region_coords":[[354,353],[396,399],[412,418],[423,425],[314,314],[321,339]],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"gpp7","uniquename":"SJAG_01093"},{"uniquename":"SJAG_01091"},{"uniquename":"SJAG_02127"},{"uniquename":"SJAG_02126"},{"uniquename":"SJAG_02125"},{"uniquename":"SJAG_02124"},{"uniquename":"SJAG_06576"},{"uniquename":"SJAG_05255"},{"uniquename":"SJAG_02131"},{"uniquename":"SJAG_02132"},{"uniquename":"SJAG_02133"}],"genes_by_uniquename":{"SJAG_02124":null},"has_protein_features":true,"interpro_matches":[{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.30.1220.10","interpro_id":"IPR036627","interpro_name":"CobW-like, C-terminal domain superfamily","interpro_type":"Homologous_superfamily","locations":[{"end":463,"score":2.100000074278796e-6,"start":271}],"model":"1nijA02","name":"CobW-like, C-terminal domain"},{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.40.50.300","interpro_id":"IPR027417","interpro_name":"P-loop containing nucleoside triphosphate hydrolase","interpro_type":"Homologous_superfamily","locations":[{"end":244,"score":0.0,"start":4}],"model":"1nijA01","name":"P-loop containing nucleotide triphosphate hydrolases"},{"dbname":"PFAM","evidence":"HMMPfam","id":"PF02492","interpro_id":"IPR003495","interpro_name":"CobW/HypB/UreG, nucleotide-binding domain","interpro_type":"Domain","locations":[{"end":225,"score":2.802596928649634e-45,"start":8}],"model":"PF02492","name":"CobW/HypB/UreG, nucleotide-binding domain"},{"dbname":"PFAM","evidence":"HMMPfam","id":"PF07683","interpro_id":"IPR011629","interpro_name":"Zinc chaperone CobW-like, C-terminal","interpro_type":"Domain","locations":[{"end":463,"score":1.6999999630229468e-8,"start":371}],"model":"PF07683","name":"Cobalamin synthesis protein cobW C-terminal domain"},{"dbname":"PANTHER","evidence":"HMMPfam","id":"PTHR43603","interpro_id":"IPR051927","interpro_name":"Zinc Chaperone and cDPG Synthetase","interpro_type":"Family","locations":[{"end":502,"score":0.0,"start":2}],"model":"PTHR43603:SF1","name":"COBW DOMAIN-CONTAINING PROTEIN DDB_G0274527"},{"dbname":"SMART","evidence":"Smart scan","id":"SM00833","interpro_id":"IPR011629","interpro_name":"Zinc chaperone CobW-like, C-terminal","interpro_type":"Domain","locations":[{"end":464,"score":1.5999997839691475e-39,"start":283}],"model":"SM00833","name":"Cobalamin synthesis protein cobW C-terminal domain"},{"dbname":"SSF","evidence":"HMMPfam","id":"SSF52540","interpro_id":"IPR027417","interpro_name":"P-loop containing nucleoside triphosphate hydrolase","interpro_type":"Homologous_superfamily","locations":[{"end":310,"score":5.239999851106838e-30,"start":5}],"model":"0054467","name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"SSF","evidence":"HMMPfam","id":"SSF90002","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":464,"score":1.4400000081238318e-9,"start":374}],"model":"0041413","name":"Hypothetical protein YjiA, C-terminal domain"},{"dbname":"CDD","evidence":"RPS-BLAST","id":"cd03112","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":241,"score":0.0,"start":8}],"model":"cd03112","name":"cobalamin synthesis protein CobW"}],"location":{"chromosome_name":"supercont5.1","end_pos":43863,"start_pos":42306,"strand":"forward"},"low_complexity_region_coords":[[315,320],[340,353]],"product":"cobalamin (vitamin B12) biosynthesis CobW-like protein","taxonid":4897,"taxonomic_distribution":"other","transcript_so_termid":"SO:0000234","transcripts":["SJAG_02124.1"],"transcripts_by_uniquename":{"SJAG_02124.1":null},"uniprot_identifier":"B6K1L3","uniquename":"SJAG_02124"}


id: SJAG_02125
data:
  {"cv_annotations":{"biological_process":[{"annotations":[103203],"is_not":false,"summary":null,"term":"GO:0015847"},{"annotations":[57657],"is_not":false,"summary":null,"term":"GO:1903711"},{"annotations":[103204],"is_not":false,"summary":null,"term":"GO:0071918"}],"cellular_component":[{"annotations":[103202],"is_not":false,"summary":null,"term":"GO:0005886"}],"molecular_function":[{"annotations":[103205],"is_not":false,"summary":null,"term":"GO:0015489"},{"annotations":[103206],"is_not":false,"summary":null,"term":"GO:0015606"},{"annotations":[103207],"is_not":false,"summary":null,"term":"GO:0015204"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_02125","EnsemblGenomes-Tr:EEB07045","InterPro:IPR001734","InterPro:IPR038377","UniProtKB/TrEMBL:B6K1L4","GOA:B6K1L4"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_01095"},{"name":"gpp7","uniquename":"SJAG_01093"},{"uniquename":"SJAG_01091"},{"uniquename":"SJAG_02127"},{"uniquename":"SJAG_02126"},{"uniquename":"SJAG_02125"},{"uniquename":"SJAG_02124"},{"uniquename":"SJAG_06576"},{"uniquename":"SJAG_05255"},{"uniquename":"SJAG_02131"},{"uniquename":"SJAG_02132"}],"genes_by_uniquename":{"SJAG_02125":null,"SPBC23G7.13c":null,"YHL016C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:1.20.1730.10","interpro_id":"IPR038377","interpro_name":"Sodium/glucose symporter superfamily","interpro_type":"Homologous_superfamily","locations":[{"end":569,"score":0.0,"start":34}],"model":"3dh4A01","name":"Sodium/glucose cotransporter"},{"dbname":"PFAM","evidence":"HMMPfam","id":"PF00474","interpro_id":"IPR001734","interpro_name":"Sodium/solute symporter","interpro_type":"Family","locations":[{"end":453,"score":9.499999663884276e-14,"start":49}],"model":"PF00474","name":"Sodium:solute symporter family"},{"dbname":"PROFILE","evidence":"PrfScan","id":"PS50283","interpro_id":"IPR001734","interpro_name":"Sodium/solute symporter","interpro_type":"Family","locations":[{"end":478,"score":0.0,"start":12}],"model":"PS50283","name":"Sodium:solute symporter family profile"},{"dbname":"PANTHER","evidence":"HMMPfam","id":"PTHR46154","interpro_id":"IPR031155","interpro_name":"Urea active transporter","interpro_type":"Family","locations":[{"end":630,"score":0.0,"start":3}],"model":"PTHR46154:SF4","name":""},{"dbname":"NCBIFAM","evidence":"HMMPfam","id":"TIGR00813","interpro_id":"IPR001734","interpro_name":"Sodium/solute symporter","interpro_type":"Family","locations":[{"end":464,"score":0.0,"start":47}],"model":"TIGR00813","name":"sodium/solute symporter"},{"dbname":"CDD","evidence":"RPS-BLAST","id":"cd11476","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":516,"score":0.0,"start":13}],"model":"cd11476","name":"Na(+)/urea-polyamine cotransporter DUR3, and related proteins; solute-binding domain"}],"location":{"chromosome_name":"supercont5.1","end_pos":40948,"start_pos":38978,"strand":"reverse"},"low_complexity_region_coords":[[59,72],[65,77],[436,445]],"ortholog_annotations":[{"gene_uniquename":"SJAG_02125","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC23G7.13c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_02125","ortholog_taxonid":4932,"ortholog_uniquename":"YHL016C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_02125","ortholog_taxonid":4932,"ortholog_uniquename":"YHL016C","reference_uniquename":"PMID:26896847"}],"product":"plasma membrane urea transmembrane transporter","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"subset_termids":["GO:0022857","GO:0005886","GO:0055085"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005886":null,"GO:0015204":null,"GO:0015489":null,"GO:0015606":null,"GO:0015847":null,"GO:0071918":null,"GO:1903711":null},"tm_domain_coords":[[12,34],[87,109],[129,151],[161,183],[190,212],[253,275],[288,310],[357,379],[400,422],[427,449],[456,475],[495,517],[553,572],[587,609]],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_02125.1"],"transcripts_by_uniquename":{"SJAG_02125.1":null},"uniprot_identifier":"B6K1L4","uniquename":"SJAG_02125"}


id: SJAG_02126
data:
  {"cv_annotations":{},"dbxrefs":["InterPro:IPR003480","EnsemblGenomes-Gn:SJAG_02126","InterPro:IPR023213","GOA:B6K1L5","UniProtKB/TrEMBL:B6K1L5","EnsemblGenomes-Tr:EEB07046"],"deletion_viability":"unknown","disordered_region_coords":[[207,213]],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_01096"},{"uniquename":"SJAG_01095"},{"name":"gpp7","uniquename":"SJAG_01093"},{"uniquename":"SJAG_01091"},{"uniquename":"SJAG_02127"},{"uniquename":"SJAG_02126"},{"uniquename":"SJAG_02125"},{"uniquename":"SJAG_02124"},{"uniquename":"SJAG_06576"},{"uniquename":"SJAG_05255"},{"uniquename":"SJAG_02131"}],"genes_by_uniquename":{"SJAG_02126":null,"YLL063C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.30.559.10","interpro_id":"IPR023213","interpro_name":"Chloramphenicol acetyltransferase-like domain superfamily","interpro_type":"Homologous_superfamily","locations":[{"end":408,"score":0.0,"start":6},{"end":452,"score":0.0,"start":204}],"model":"2rkvA01","name":"Chloramphenicol acetyltransferase-like domain"},{"dbname":"PFAM","evidence":"HMMPfam","id":"PF02458","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":443,"score":9.400000244533189e-18,"start":117}],"model":"PF02458","name":"Transferase family"},{"dbname":"PANTHER","evidence":"HMMPfam","id":"PTHR31896","interpro_id":"IPR051283","interpro_name":"Diverse Secondary Metabolite Acyltransferases","interpro_type":"Family","locations":[{"end":446,"score":1.0999999767548716e-35,"start":16}],"model":"PTHR31896:SF64","name":"FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED"}],"location":{"chromosome_name":"supercont5.1","end_pos":35614,"start_pos":34256,"strand":"reverse"},"ortholog_annotations":[{"gene_uniquename":"SJAG_02126","ortholog_taxonid":4932,"ortholog_uniquename":"YLL063C","reference_uniquename":"PMID:26896847"}],"product":"CoA-dependent acyltransferase superfamily (predicted)","references_by_uniquename":{"PMID:26896847":null},"taxonid":4897,"taxonomic_distribution":"other","transcript_so_termid":"SO:0000234","transcripts":["SJAG_02126.1"],"transcripts_by_uniquename":{"SJAG_02126.1":null},"uniprot_identifier":"B6K1L5","uniquename":"SJAG_02126"}


id: SJAG_02127
data:
  {"cv_annotations":{},"dbxrefs":["EnsemblGenomes-Tr:EEB07047","EnsemblGenomes-Gn:SJAG_02127","InterPro:IPR003480","InterPro:IPR023213","UniProtKB/TrEMBL:B6K1L6","GOA:B6K1L6"],"deletion_viability":"unknown","disordered_region_coords":[[121,122],[190,195],[198,208],[210,212]],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_01096"},{"uniquename":"SJAG_01095"},{"name":"gpp7","uniquename":"SJAG_01093"},{"uniquename":"SJAG_01091"},{"uniquename":"SJAG_02127"},{"uniquename":"SJAG_02126"},{"uniquename":"SJAG_02125"},{"uniquename":"SJAG_02124"},{"uniquename":"SJAG_06576"},{"uniquename":"SJAG_05255"}],"genes_by_uniquename":{"SJAG_02127":null,"YLL063C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"CATHGENE3D","evidence":"HMMPfam","id":"G3DSA:3.30.559.10","interpro_id":"IPR023213","interpro_name":"Chloramphenicol acetyltransferase-like domain superfamily","interpro_type":"Homologous_superfamily","locations":[{"end":413,"score":0.0,"start":6},{"end":456,"score":0.0,"start":204}],"model":"2rkvA01","name":"Chloramphenicol acetyltransferase-like domain"},{"dbname":"PFAM","evidence":"HMMPfam","id":"PF02458","interpro_id":"","interpro_name":"","interpro_type":"","locations":[{"end":449,"score":1.8000000700569598e-14,"start":14}],"model":"PF02458","name":"Transferase family"},{"dbname":"PANTHER","evidence":"HMMPfam","id":"PTHR31896","interpro_id":"IPR051283","interpro_name":"Diverse Secondary Metabolite Acyltransferases","interpro_type":"Family","locations":[{"end":452,"score":3.8000005379005735e-39,"start":16}],"model":"PTHR31896:SF64","name":"FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED"}],"location":{"chromosome_name":"supercont5.1","end_pos":33662,"start_pos":32289,"strand":"forward"},"ortholog_annotations":[{"gene_uniquename":"SJAG_02127","ortholog_taxonid":4932,"ortholog_uniquename":"YLL063C","reference_uniquename":"PMID:26896847"}],"product":"CoA-dependent acyltransferase superfamily (predicted)","references_by_uniquename":{"PMID:26896847":null},"taxonid":4897,"taxonomic_distribution":"other","transcript_so_termid":"SO:0000234","transcripts":["SJAG_02127.1"],"transcripts_by_uniquename":{"SJAG_02127.1":null},"uniprot_identifier":"B6K1L6","uniquename":"SJAG_02127"}


id: SJAG_02131
data:
  {"cv_annotations":{"biological_process":[{"annotations":[83660],"is_not":false,"summary":null,"term":"GO:0016052"},{"annotations":[97680],"is_not":false,"summary":null,"term":"GO:0000025"},{"annotations":[92162],"is_not":false,"summary":null,"term":"GO:0009313"},{"annotations":[92164],"is_not":false,"summary":null,"term":"GO:0000272"}],"cellular_component":[{"annotations":[92160],"is_not":false,"summary":null,"term":"GO:0009986"},{"annotations":[83656],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[97678],"is_not":false,"summary":null,"term":"GO:0005576"},{"annotations":[83658],"is_not":false,"summary":null,"term":"GO:0031160"}],"molecular_function":[{"annotations":[97682],"is_not":false,"summary":null,"term":"GO:0004558"},{"annotations":[83662,92166],"is_not":false,"summary":null,"term":"GO:0090599"},{"annotations":[83664,92168,97684],"is_not":false,"summary":null,"term":"GO:0030246"}]},"dbxrefs":["InterPro:IPR030458","InterPro:IPR031727","InterPro:IPR011013","InterPro:IPR017853","InterPro:IPR013780","GOA:B6K1M0","InterPro:IPR000322","EnsemblGenomes-Gn:SJAG_02131","UniProtKB/TrEMBL:B6K1M0","EnsemblGenomes-Tr:EEB07051"],"deletion_viability":"unknown","disordered_region_coords":[[29,30],[578,582],[584,587],[589,600],[819,820]],"feature_so_termid":"SO:0000704","feature_type":"mRNA 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id: SJAG_02139
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id: SJAG_02140
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id: SJAG_02142
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id: SJAG_02143
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id: SJAG_02144
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id: SJAG_02145
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id: SJAG_02146
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id: SJAG_02150
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id: SJAG_02151
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id: SJAG_02152
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id: SJAG_02153
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id: SJAG_02154
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id: SJAG_02155
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id: SJAG_02156
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id: SJAG_02159
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id: SJAG_02184
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id: SJAG_02196
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id: SJAG_02198
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id: SJAG_02212
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id: SJAG_02213
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id: SJAG_02214
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