# terms

id: PBO:0045193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJB6 pseudogene 6","termid":"PBO:0045193"}


id: FYPO:0007044
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alkaline phosphatase activity is decreased during a cellular stress response to zinc ions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased alkaline phosphatase activity","termid":"FYPO:0007042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000652","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"decreased alkaline phosphatase activity during stress response to zinc ion","synonyms":[{"name":"decreased alkaline phosphatase activity during cellular response to excess zinc","type":"exact"},{"name":"decreased alkaline phosphatase activity during cellular response to high zinc level","type":"exact"},{"name":"decreased alkaline phosphatase activity during cellular response to replete zinc","type":"related"},{"name":"decreased alkaline phosphatase activity during cellular stress response to zinc ion","type":"exact"},{"name":"decreased alkaline phosphatase activity during response to zinc ion stress","type":"exact"},{"name":"decreased alkaline phosphatase activity during response to zinc toxicity","type":"related"},{"name":"decreased alkaline phosphatase activity during stress response to zinc","type":"broad"},{"name":"reduced alkaline phosphatase activity during stress response to zinc ion","type":"exact"}],"termid":"FYPO:0007044"}


id: PBO:0062318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily B member 3","termid":"PBO:0062318"}


id: PR:O60077
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- arz1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat-containing zfs1 target protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1494.03","synonyms":[{"name":"Spom972h-arz1","type":"exact"}],"termid":"PR:O60077"}


id: GO:0034489
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of neutral amino acids out of the vacuole, across the vacuolar membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutral amino acid transport","termid":"GO:0015804"},{"relation_name":"is_a","term_name":"amino acid transmembrane export from vacuole","termid":"GO:0032974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"neutral amino acid transmembrane export from vacuole","termid":"GO:0034489"}


id: GO:0002085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that prevents the activation of neuroepithelial cell differentiation. Neuroepithelial cell differentiation is the process in which epiblast cells acquire specialized features of neuroepithelial cells.","definition_xrefs":["GOC:dph","PMID:16678814"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation","termid":"GO:0030857"},{"relation_name":"is_a","term_name":"regulation of embryonic development","termid":"GO:0045995"},{"relation_name":"is_a","term_name":"regulation of timing of cell differentiation","termid":"GO:0048505"},{"relation_name":"negatively_regulates","term_name":"neuroepithelial cell differentiation","termid":"GO:0060563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inhibition of neuroepithelial cell differentiation","synonyms":[{"name":"negative regulation of neural plate formation","type":"narrow"},{"name":"repression of premature neural plate formation","type":"narrow"}],"termid":"GO:0002085"}


id: PBO:0113472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC2, a regulator of plasma membrane (PM) homeostasis; TORC2 also regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; interacts with Slm1p and Slm2p, homologous PH domain-containing TORC2 substrates; BIT2 has a paralog, BIT61, that arose from the whole genome duplication","termid":"PBO:0113472"}


id: PBO:0000516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity protein kinase Lkh1","termid":"PBO:0000516"}


id: GO:0003197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of a cardiac cushion over time, from its initial formation to the mature structure. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchyme development","termid":"GO:0060485"},{"relation_name":"part_of","term_name":"heart development","termid":"GO:0007507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endocardial cushion development","termid":"GO:0003197"}


id: GO:2001145
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of phosphatase activity","termid":"GO:0010923"},{"relation_name":"is_a","term_name":"regulation of phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity","termid":"GO:2001144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity","termid":"GO:2001145"}


id: PBO:0111896
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin bimC subfamily","termid":"PBO:0111896"}


id: PBO:0069845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1131, pseudogene","termid":"PBO:0069845"}


id: PBO:0068555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 6, pseudogene","termid":"PBO:0068555"}


id: GO:2000065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cortisol biosynthetic process.","definition_xrefs":["GOC:yaf","GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of glucocorticoid biosynthetic process","termid":"GO:0031947"},{"relation_name":"is_a","term_name":"negative regulation of alcohol biosynthetic process","termid":"GO:1902931"},{"relation_name":"is_a","term_name":"regulation of cortisol biosynthetic process","termid":"GO:2000064"},{"relation_name":"negatively_regulates","term_name":"cortisol biosynthetic process","termid":"GO:0034651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"negative regulation of cortisol biosynthetic process","synonyms":[{"name":"negative regulation of cortisol anabolism","type":"related"},{"name":"negative regulation of cortisol biosynthesis","type":"exact"},{"name":"negative regulation of cortisol formation","type":"exact"},{"name":"negative regulation of cortisol synthesis","type":"exact"}],"termid":"GO:2000065"}


id: PR:Q9P7J2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- xlf1 gene.","definition_xrefs":["UniProtKB:Q9P7J2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Xrcc4-like factor 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC24B10.14c","synonyms":[{"name":"Spom972h-xlf1","type":"exact"},{"name":"meiotically up-regulated gene 104 protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"non-homologous end-joining protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7J2"}


id: PBO:0063710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglucomutase 5","termid":"PBO:0063710"}


id: SO:1000096
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The insertion of one or more amino acids from the polypeptide, without affecting the surrounding sequence.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000096 sequence_variant_causing_amino_acid_insertion (obsolete SO:1000096)","synonyms":[{"name":"mutation causing amino acid insertion","type":"related"},{"name":"sequence variant causing amino acid insertion","type":"exact"}],"termid":"SO:1000096"}


id: GO:0035008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate or extent of the melanization defense response during injury or invasion.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of melanization defense response","termid":"GO:0035007"},{"relation_name":"is_a","term_name":"positive regulation of innate immune response","termid":"GO:0045089"},{"relation_name":"positively_regulates","term_name":"melanization defense response","termid":"GO:0035006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"positive regulation of melanization defense response","synonyms":[{"name":"activation of melanization defense response","type":"narrow"},{"name":"positive regulation of melanization defence response","type":"exact"},{"name":"stimulation of melanization defense response","type":"narrow"},{"name":"up regulation of melanization defense response","type":"exact"},{"name":"up-regulation of melanization defense response","type":"exact"},{"name":"upregulation of melanization defense response","type":"exact"}],"termid":"GO:0035008"}


id: GO:0030290
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any of a group of peptide cofactors of enzymes for the lysosomal degradation of sphingolipids. They stimulate various enzymes, including glucosylceramidase, galactosylceramidase, cerebroside-sulfatase, alpha-galactosidase, beta-galactosidase, and sphingomyelin phosphodiesterase.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"}],"interesting_parent_ids":["GO:0140677","GO:0098772","GO:0003674","GO:0030234"],"is_obsolete":false,"name":"sphingolipid activator protein activity","secondary_identifiers":["Reactome:R-HSA-1605717","Reactome:R-HSA-9840470"],"synonyms":[{"name":"saposin","type":"narrow"}],"termid":"GO:0030290"}


id: GO:0018193
data:
  {"annotated_genes":["SJAG_02467","SJAG_00251","SJAG_03843","SJAG_00604","SJAG_04544","SJAG_01058","SJAG_05032","SJAG_02082","SJAG_00235","SJAG_04085","SJAG_01776","SJAG_01985","SJAG_02503","SJAG_04846","SJAG_00727","SJAG_01418"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57435],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0033234"},{"annotations":[105841,96655,114950,96801,107301,111888,113632,101361],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017183"},{"annotations":[85628,93826,105685,110801,85785,92262,100589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016925"}]},"cv_name":"biological_process","definition":"The alteration of an amino acid residue in a peptide.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00235":null,"SJAG_00251":null,"SJAG_00604":null,"SJAG_00727":null,"SJAG_01058":null,"SJAG_01418":null,"SJAG_01776":null,"SJAG_01985":null,"SJAG_02082":null,"SJAG_02467":null,"SJAG_02503":null,"SJAG_03843":null,"SJAG_04085":null,"SJAG_04544":null,"SJAG_04846":null,"SJAG_05032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-amino acid modification","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"termid":"GO:0018193","terms_by_termid":{"GO:0016925":null,"GO:0017183":null,"GO:0033234":null}}


id: PBO:0046104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4B pseudogene 7","termid":"PBO:0046104"}


id: GO:0075178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism activates, maintains or increases the frequency, rate or extent of its calcium or calmodulin-mediated signal transduction as a result of detecting host molecules in, on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of calcium or calmodulin-mediated signal transduction in response to host (obsolete GO:0075178)","synonyms":[{"name":"positive regulation of symbiont Ca++ or calmodulin-mediated signal transduction in response to host","type":"exact"},{"name":"positive regulation of symbiont calcium or calmodulin-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075178"}


id: PBO:0089660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIP/FAR complex WD repeat (scaffold) subunit, striatin, Far8/Csc3","termid":"PBO:0089660"}


id: MOD:00327
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to a 3-hydroxy-L-tryptophan.","definition_xrefs":["PubMed:10024453","RESID:AA0322","ChEBI:141794","PubMed:11457355"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated tryptophan","termid":"MOD:01622"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxy-L-tryptophan","synonyms":[{"name":"3-hydroxylated L-tryptophan","type":"exact"},{"name":"3-hydroxytryptophan","type":"exact"},{"name":"3HyTrp","type":"exact"},{"name":"MOD_RES 3-hydroxytryptophan","type":"exact"},{"name":"beta-hydroxytryptophan","type":"exact"},{"name":"(2S,3S)-2-amino-3-hydroxy-3-(1H-indol-3-yl)propanoic acid","type":"exact"},{"name":"3-hydroxy-L-tryptophan","type":"exact"}],"termid":"MOD:00327"}


id: GO:0031694
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an alpha-2A adrenergic receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adrenergic receptor binding","termid":"GO:0031690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"alpha-2A adrenergic receptor binding","synonyms":[{"name":"alpha-2A adrenergic receptor ligand","type":"narrow"}],"termid":"GO:0031694"}


id: GO:0007558
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of juvenile hormone secretion.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid transport","termid":"GO:0032368"},{"relation_name":"is_a","term_name":"regulation of endocrine process","termid":"GO:0044060"},{"relation_name":"is_a","term_name":"regulation of hormone secretion","termid":"GO:0046883"},{"relation_name":"regulates","term_name":"juvenile hormone secretion","termid":"GO:0045443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of juvenile hormone secretion","termid":"GO:0007558"}


id: PBO:0073107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sidekick cell adhesion molecule 2","termid":"PBO:0073107"}


id: GO:0000952
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When an aromatic family amino acid, phenylalanine, tyrosine, or tryptophan, is used as the substrate, 2-phenylethanoate, 4-hydroxyphenylethanoate, or 2-(Indol-3-yl)-ethanoate, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of carboxylic acids, sometimes collectively referred to as fusel acids. Depending on the redox state of the cells, alcohol derivatives may be produced instead of carboxylic acids.","definition_xrefs":["PMID:18281432","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid catabolic process to carboxylic acid via Ehrlich pathway","termid":"GO:0000948"},{"relation_name":"is_a","term_name":"aromatic amino acid family catabolic process","termid":"GO:0009074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520","GO:0044248"],"is_obsolete":false,"name":"aromatic amino acid family catabolic process to carboxylic acid via Ehrlich pathway","termid":"GO:0000952"}


id: FYPO:0007505
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at one or more specific promoter elements is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"},{"relation_name":"is_a","term_name":"decreased protein localization to chromatin","termid":"FYPO:0006631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein localization to chromatin at promoter","synonyms":[{"name":"decreased protein localisation to chromatin at promoter","type":"exact"},{"name":"decreased protein localization to chromatin at promoter during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to chromatin at promoter during vegetative growth","type":"exact"},{"name":"reduced protein localization to chromatin at promoter","type":"exact"}],"termid":"FYPO:0007505"}


id: GO:1902698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of pentose to butyrate.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators","PMID:18727018","PMID:19539744","GO_REF:0000093"],"gene_count":0,"genotype_count":0,"name":"obsolete pentose catabolic process to butyrate (obsolete GO:1902698)","synonyms":[{"name":"acidogenesis","type":"broad"},{"name":"pentose breakdown to butyrate","type":"exact"},{"name":"pentose catabolism to butyrate","type":"exact"},{"name":"pentose degradation to butyrate","type":"exact"}],"termid":"GO:1902698"}


id: GO:0061612
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways in which galactose, the aldohexose galacto-hexose, is converted to glucose-1-phosphate.","definition_xrefs":["GOC:dph","ISBN:0879010479","ISBN:0201090910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactose metabolic process","termid":"GO:0006012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"galactose to glucose-1-phosphate metabolic process","termid":"GO:0061612"}


id: PBO:0027499
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_oligomycin","termid":"PBO:0027499"}


id: GO:0102497
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: scyllo-inositol + NADP = 2,4,6/3,5-pentahydroxycyclohexanone + NADPH + H+.","definition_xrefs":["GOC:pz","EC:1.1.1.371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"scyllo-inositol dehydrogenase (NADP+) activity","secondary_identifiers":["MetaCyc:RXN-14347","RHEA:39063"],"termid":"GO:0102497"}


id: PBO:0052691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 15","termid":"PBO:0052691"}


id: GO:0061463
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction O-acetyl-ADP-ribose + H2O = ADP-ribose + acetate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deacetylase activity","termid":"GO:0019213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0019213"],"is_obsolete":false,"name":"O-acetyl-ADP-ribose deacetylase activity","termid":"GO:0061463"}


id: FYPO:0001705
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which any mitotic DNA damage checkpoint is normal (i.e. indistinguishable from wild type). A DNA damage checkpoint normally regulates progression through the cell cycle in response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular response to stress during vegetative growth","termid":"FYPO:0000968"},{"relation_name":"is_a","term_name":"normal mitotic cell cycle checkpoint","termid":"FYPO:0001703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0000298","FYPO:0000631"],"is_obsolete":false,"name":"normal mitotic DNA damage checkpoint","synonyms":[{"name":"normal DNA damage checkpoint during mitotic cell cycle","type":"exact"},{"name":"normal mitotic DNA damage checkpoint activation","type":"exact"},{"name":"normal mitotic DNA damage checkpoint activation under non-stressed conditions","type":"narrow"},{"name":"normal mitotic DNA damage checkpoint during cellular response to DNA damage","type":"exact"},{"name":"normal mitotic DNA damage checkpoint during vegetative growth","type":"exact"}],"termid":"FYPO:0001705"}


id: PBO:0088877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper-binding protein of the mitochondrial inner membrane Cmc2","termid":"PBO:0088877"}


id: SO:0000760
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000760 YAC_clone (obsolete SO:0000760)","termid":"SO:0000760"}


id: GO:0060590
data:
  {"annotated_genes":["SJAG_04511","SJAG_02875","SJAG_01121","SJAG_01708","SJAG_03221","SJAG_02045","SJAG_00901","SJAG_00796","SJAG_04817","SJAG_01597","SJAG_01510","SJAG_01737","SJAG_02470","SJAG_01556","SJAG_04422","SJAG_04014","SJAG_00066","SJAG_03717"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105879,106012,106997,100532,83946,69614,88359],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000774"},{"annotations":[100921,87414,84950,99259,103797,106441,92302,96401],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001671"},{"annotations":[114180,96593,114119],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042030"}]},"cv_name":"molecular_function","definition":"Binds to and modulates the activity of an ATP hydrolysis activity.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular function regulator activity","termid":"GO:0098772"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00066":null,"SJAG_00796":null,"SJAG_00901":null,"SJAG_01121":null,"SJAG_01510":null,"SJAG_01556":null,"SJAG_01597":null,"SJAG_01708":null,"SJAG_01737":null,"SJAG_02045":null,"SJAG_02470":null,"SJAG_02875":null,"SJAG_03221":null,"SJAG_03717":null,"SJAG_04014":null,"SJAG_04422":null,"SJAG_04511":null,"SJAG_04817":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0098772"],"is_obsolete":false,"name":"ATPase regulator activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ATP hydrolysis regulator activity","type":"exact"}],"termid":"GO:0060590","terms_by_termid":{"GO:0000774":null,"GO:0001671":null,"GO:0042030":null}}


id: PBO:0059206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X13, pseudogene","termid":"PBO:0059206"}


id: PATO:0000675
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000675 body temperature value (obsolete PATO:0000675)","termid":"PATO:0000675"}


id: GO:0140823
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H2B-serine (position 36) + ATP = histone H2B-phosphoserine (position 36) + ADP. This reaction is the addition of a phosphate group to the serine residue at position 36 of histone H2B.","definition_xrefs":["PMID:32822587"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"},{"relation_name":"is_a","term_name":"histone H2B kinase activity","termid":"GO:0140998"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0004672","GO:0016740","GO:0003824","GO:0140096","GO:0003674","GO:0016301"],"is_obsolete":false,"name":"histone H2BS36 kinase activity","secondary_identifiers":["EC:2.7.11.1"],"synonyms":[{"name":"histone H2B-S36 kinase activity","type":"exact"},{"name":"histone kinase activity (H2B-S36 specific)","type":"exact"}],"termid":"GO:0140823"}


id: GO:0048472
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O-phospho-L-threonine + H+ = (R)-1-aminopropan-2-yl phosphate + CO2.","definition_xrefs":["EC:4.1.1.81","RHEA:11492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"threonine-phosphate decarboxylase activity","secondary_identifiers":["KEGG_REACTION:R06530","MetaCyc:4.1.1.81-RXN"],"synonyms":[{"name":"CobD","type":"related"},{"name":"L-threonine O-3-phosphate carboxy-lyase [(R)-1-aminopropan-2-yl-phosphate-forming]","type":"related"},{"name":"L-threonine O-3-phosphate carboxy-lyase activity","type":"related"},{"name":"L-threonine-O-3-phosphate decarboxylase activity","type":"exact"}],"termid":"GO:0048472"}


id: PBO:0003760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial fission protein Fis1 (predicted)","termid":"PBO:0003760"}


id: GO:0018959
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring, in the presence of oxygen.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aerobic phenol-containing compound metabolic process","secondary_identifiers":["UM-BBD_pathwayID:pba"],"synonyms":[{"name":"aerobic phenol-containing compound metabolism","type":"exact"}],"termid":"GO:0018959"}


id: GO:0009591
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal.","definition_xrefs":["GOC:hb"],"gene_count":0,"genotype_count":0,"name":"obsolete perception of mechanical stimulus (obsolete GO:0009591)","synonyms":[{"name":"perception of mechanical stimulus","type":"exact"}],"termid":"GO:0009591"}


id: MOD:00718
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to a methylated tyrosine, such as N-methyl-L-tyrosine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated tyrosine","synonyms":[{"name":"MeTyr","type":"exact"}],"termid":"MOD:00718"}


id: SO:0001812
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region that traverses the lipid bilayer and adopts a helical secondary structure.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide_helix","termid":"SO:0001114"},{"relation_name":"part_of","term_name":"transmembrane_polypeptide_region","termid":"SO:0001077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"transmembrane_helix","synonyms":[{"name":"transmembrane helix","type":"exact"}],"termid":"SO:0001812"}


id: PBO:0084132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hexose transporter; expressed at low levels and expression is repressed by glucose","termid":"PBO:0084132"}


id: PBO:0058276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4653","termid":"PBO:0058276"}


id: GO:0071116
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha6-beta1 integrin complex bound to CYR61, a cysteine-rich protein involved in angiogenesis.","definition_xrefs":["PMID:12826661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"alpha6-beta1 integrin-CYR61 complex","synonyms":[{"name":"ITGA6-ITGB1-CYR61 complex","type":"narrow"}],"termid":"GO:0071116"}


id: PBO:0068061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 366","termid":"PBO:0068061"}


id: GO:0102298
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-selenocysteine + O-phosphonato-L-homoserine = hydrogenphosphate + L-selenocystathionine.","definition_xrefs":["EC:2.5.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016765","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"selenocystathione synthase activity","secondary_identifiers":["MetaCyc:RXN-12728"],"termid":"GO:0102298"}


id: PBO:0042824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxylesterase 3","termid":"PBO:0042824"}


id: PBO:0091304
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript with all introns spliced represents 85% of total mRNA","termid":"PBO:0091304"}


id: FYPO:0006463
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA cleavage and polyadenylation specificity factor complex assembly is abnormal.","definition_xrefs":["PMID:27401558","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein complex assembly","termid":"FYPO:0000447"},{"relation_name":"is_a","term_name":"abnormal RNA processing","termid":"FYPO:0001553"},{"relation_name":"is_a","term_name":"abnormal protein complex organization during vegetative growth","termid":"FYPO:0007402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal mRNA cleavage and polyadenylation specificity factor complex assembly","synonyms":[{"name":"abnormal mRNA cleavage and polyadenylation specificity factor complex assembly during mitotic cell cycle","type":"related"},{"name":"abnormal mRNA cleavage and polyadenylation specificity factor complex assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0006463"}


id: PBO:0070352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 25","termid":"PBO:0070352"}


id: PATO:0001132
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001132 relative ratio value (obsolete PATO:0001132)","termid":"PATO:0001132"}


id: PBO:0064099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi like RNA-mediated gene silencing 1","termid":"PBO:0064099"}


id: PBO:0042849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 58","termid":"PBO:0042849"}


id: GO:0060151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a peroxisome is transported to, and/or maintained in, a specific location. A peroxisome is a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.","definition_xrefs":["GOC:dph","PMID:16449325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle localization","termid":"GO:0051640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"peroxisome localization","synonyms":[{"name":"peroxisome localisation","type":"exact"}],"termid":"GO:0060151"}


id: PBO:0053056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucyl-tRNA synthetase 2, mitochondrial","termid":"PBO:0053056"}


id: PBO:0085965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; overexpression suppresses the lethality caused by a rad53 null mutation","termid":"PBO:0085965"}


id: GO:0034611
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the exonucleolytic cleavage of oligoribonucleotides to yield ribonucleoside 5'-phosphates.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA nuclease activity","termid":"GO:0004540"},{"relation_name":"is_a","term_name":"oligonucleotidase activity","termid":"GO:0008946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0140098","GO:0016787","GO:0016788","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oligoribonucleotidase activity","secondary_identifiers":["Reactome:R-HSA-9615042","Reactome:R-HSA-9009950"],"synonyms":[{"name":"RNA oligonucleotidase activity","type":"exact"}],"termid":"GO:0034611"}


id: GO:0071061
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha6-beta4 integrin complex bound to the tetraspanin CD151.","definition_xrefs":["PMID:10811835"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"alpha6-beta4 integrin-CD151 complex","synonyms":[{"name":"ITGA6-ITGB4-CD151 complex","type":"narrow"}],"termid":"GO:0071061"}


id: GO:0071766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall of the type found in Actinobacteria. The cell wall is the rigid or semi-rigid envelope lying outside the cell membrane. Actinobacterial cell walls contain characteristic mycolic acids, of which some are covalently linked to the cell wall peptidoglycan and others accumulate at the cell surface.","definition_xrefs":["PMID:15653820","GOC:mah","PMID:3149973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidoglycan-based cell wall biogenesis","termid":"GO:0009273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"Actinobacterium-type cell wall biogenesis","termid":"GO:0071766"}


id: GO:0061606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The propionylation of the N-terminal amino acid of proteins.","definition_xrefs":["PMID:17267393","PMID:23043182","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-translational protein modification","termid":"GO:0043687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal protein amino acid propionylation","termid":"GO:0061606"}


id: PBO:0043686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COTL1 pseudogene 2","termid":"PBO:0043686"}


id: GO:0071301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B1 stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to vitamin B1","termid":"GO:0010266"},{"relation_name":"is_a","term_name":"cellular response to vitamin","termid":"GO:0071295"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to vitamin B1","synonyms":[{"name":"cellular response to thiamin","type":"exact"},{"name":"cellular response to thiamine","type":"exact"}],"termid":"GO:0071301"}


id: PBO:0038604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetyl-CoA acetyltransferase 1","termid":"PBO:0038604"}


id: PBO:0059022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"matrix metallopeptidase 11","termid":"PBO:0059022"}


id: PBO:0035837
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_deubiquitination_following_cellular_response_to_methyl_methanesulfonate_during_vegetative_growth","termid":"PBO:0035837"}


id: PBO:0113479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tail-anchored plasma membrane (PM) protein; C-terminal palmitoylation is required for membrane anchoring and protein stability; PM localization is polarized to the daughter cell; also localizes to the vacuolar membrane; may be involved in response to stress; upregulated by toxic concentrations of heavy metal ions and alkali; contains a conserved cysteine rich palmitoylated domain (CYSPD, aka CYSTM); CPP3 has a paralog, MNC1, that arose from the whole genome duplication","termid":"PBO:0113479"}


id: PBO:0082962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic protein of unknown function; induced in response to mycotoxin patulin; ubiquitinated protein similar to the human ring finger motif protein RNF10; predicted to be involved in repair of alkylated DNA due to interaction with MAG1","termid":"PBO:0082962"}


id: PBO:0088708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial tRNA N6-threonyl-carbamoyl-adenosine (t6A) Pgp1","termid":"PBO:0088708"}


id: PBO:0053785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1036","termid":"PBO:0053785"}


id: PBO:0063281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin gamma subfamily A, 7","termid":"PBO:0063281"}


id: PBO:0005453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar transporter chaperone (VTC) complex subunit (predicted)","termid":"PBO:0005453"}


id: GO:2000906
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of starch metabolic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of macromolecule metabolic process","termid":"GO:0010604"},{"relation_name":"is_a","term_name":"positive regulation of carbohydrate metabolic process","termid":"GO:0045913"},{"relation_name":"is_a","term_name":"regulation of starch metabolic process","termid":"GO:2000904"},{"relation_name":"positively_regulates","term_name":"starch metabolic process","termid":"GO:0005982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"positive regulation of starch metabolic process","synonyms":[{"name":"positive regulation of starch metabolism","type":"exact"}],"termid":"GO:2000906"}


id: PBO:0050126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 36","termid":"PBO:0050126"}


id: GO:0030552
data:
  {"annotated_genes":["SJAG_01245"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96524],"is_not":false,"summary":null,"term":"GO:0030552"}]},"cv_name":"molecular_function","definition":"Binding to cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclic nucleotide binding","termid":"GO:0030551"},{"relation_name":"is_a","term_name":"adenyl ribonucleotide binding","termid":"GO:0032559"},{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01245":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"cAMP binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"3',5' cAMP binding","type":"exact"},{"name":"3',5'-cAMP binding","type":"exact"},{"name":"adenosine 3',5'-cyclophosphate binding","type":"exact"},{"name":"cyclic AMP binding","type":"exact"}],"termid":"GO:0030552","terms_by_termid":{"GO:0030552":null}}


id: PBO:0031534
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine_amidase_activity","termid":"PBO:0031534"}


id: PR:O14108
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- eta2 gene.","definition_xrefs":["UniProtKB:O14108","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding protein eta2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31G5.10","synonyms":[{"name":"Spom972h-eta2","type":"exact"}],"termid":"PR:O14108"}


id: GO:1902907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a proteasome storage granule into its constituent components.","definition_xrefs":["GOC:TermGenie","PMID:23690178","GO_REF:0000079","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle disassembly","termid":"GO:1903008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"proteasome storage granule disassembly","synonyms":[{"name":"PSG disassembly","type":"related"}],"termid":"GO:1902907"}


id: GO:0060029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis contribution to the shaping of an organ.","definition_xrefs":["PMID:12062082","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"convergent extension","termid":"GO:0060026"},{"relation_name":"part_of","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"convergent extension involved in organogenesis","termid":"GO:0060029"}


id: PBO:0043570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type VII alpha 1 chain","termid":"PBO:0043570"}


id: PBO:0109547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIP/FAR complex subunit Csc2","termid":"PBO:0109547"}


id: PBO:0042023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 81","termid":"PBO:0042023"}


id: PR:G2TRR0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC336.16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRR0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C336.16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC336.16","synonyms":[{"name":"Spom972h-SPBC336.16","type":"exact"}],"termid":"PR:G2TRR0"}


id: GO:0039646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with the normal execution of the host cell G0/G1 transition checkpoint. The host is defined as the larger of the organisms involved in a symbiotic interaction. Some viruses benefit from keeping cells in resting state (G0), while others favor entry through G1 and subsequent cell division to replicate more efficiently.","definition_xrefs":["VZ:880"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cell cycle progression","termid":"GO:0044071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host cell cycle G0/G1 transition checkpoint","secondary_identifiers":["VZ:881"],"synonyms":[{"name":"G0/G1 host cell cycle checkpoint dysregulation by virus","type":"narrow"},{"name":"modulation by virus of host G0/G1 transition checkpoint","type":"narrow"},{"name":"perturbation by virus of host G0/G1 transition checkpoint","type":"narrow"}],"termid":"GO:0039646"}


id: PBO:0013464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoyltransferase Erf2","termid":"PBO:0013464"}


id: PBO:0076642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transforming growth factor beta regulator 1","termid":"PBO:0076642"}


id: PBO:0058764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6888","termid":"PBO:0058764"}


id: GO:1990454
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A type of voltage-dependent calcium channel responsible for excitation-contraction coupling of skeletal, smooth, and cardiac muscle. 'L' stands for 'long-lasting' referring to the length of activation.","definition_xrefs":["GOC:ame","PMID:12946355"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated calcium channel complex","termid":"GO:0005891"},{"relation_name":"part_of","term_name":"T-tubule","termid":"GO:0030315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"L-type voltage-gated calcium channel complex","synonyms":[{"name":"cardiac muscle L-type voltage-gated calcium channel complex","type":"narrow"},{"name":"skeletal muscle L-type voltage-gated calcium channel complex","type":"narrow"}],"termid":"GO:1990454"}


id: PBO:0086991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Required for 25S rRNA maturation and 60S ribosomal subunit assembly; localizes to the nucleolus and in foci along nuclear periphery; constituent of 66S pre-ribosomal particles; cooperates with Rrs1p and Mps3p to mediate telomere clustering by binding Sir4p, but is not involved in telomere tethering","termid":"PBO:0086991"}


id: FYPO:0003816
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell requires histidine or lysine in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for histidine or lysine","synonyms":[{"name":"growth auxotrophic for histidine or lysine during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for histidine or lysine during vegetative growth","type":"exact"},{"name":"growth auxotrophic for lysine or histidine","type":"exact"},{"name":"histidine or lysine auxotrophy","type":"exact"}],"termid":"FYPO:0003816"}


id: PBO:0046637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 18","termid":"PBO:0046637"}


id: PBO:0054948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2362","termid":"PBO:0054948"}


id: GO:0140080
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of an AP site 3' and 5' of the baseless site, generating a 3'-phosphate and a 5'-OH.","definition_xrefs":["PMID:2519777"],"gene_count":0,"genotype_count":0,"name":"obsolete class III/IV DNA-(apurinic or apyrimidinic site) endonuclease activity (obsolete GO:0140080)","secondary_identifiers":["Wikipedia:AP_endonuclease"],"synonyms":[{"name":"endonuclease III","type":"related"},{"name":"endonuclease IV","type":"related"}],"termid":"GO:0140080"}


id: PR:O13743
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pos1 gene.","definition_xrefs":["UniProtKB:O13743","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16E8.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16E8.08","synonyms":[{"name":"Spom972h-pos1","type":"exact"}],"termid":"PR:O13743"}


id: GO:1905404
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of activated CD8-positive, alpha-beta T cell apoptotic process.","definition_xrefs":["PMID:24187568","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell apoptotic process","termid":"GO:0070234"},{"relation_name":"is_a","term_name":"regulation of activated CD8-positive, alpha-beta T cell apoptotic process","termid":"GO:1905402"},{"relation_name":"positively_regulates","term_name":"activated CD8-positive, alpha-beta T cell apoptotic process","termid":"GO:1905397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of activated CD8-positive, alpha-beta T cell apoptotic process","synonyms":[{"name":"activation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"activation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"narrow"},{"name":"positive regulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"positive regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"positive regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"positive regulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"positive regulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"positive regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"positive regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"up regulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"up regulation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"up regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"up regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"up regulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"up regulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"up regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"up regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"up-regulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"up-regulation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"up-regulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"up-regulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"up-regulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"up-regulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"up-regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"up-regulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"upregulation of activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"upregulation of activated CD8-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"upregulation of activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"upregulation of activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"upregulation of activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"upregulation of activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"upregulation of activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"upregulation of activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"}],"termid":"GO:1905404"}


id: PBO:0010274
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oculomotor apraxia 1","termid":"PBO:0010274"}


id: GO:0045738
data:
  {"annotated_genes":["SJAG_03048","SJAG_00573"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001033"},{"annotations":[107908],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904332"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of DNA repair.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA repair","termid":"GO:0006282"},{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"negative regulation of DNA metabolic process","termid":"GO:0051053"},{"relation_name":"negatively_regulates","term_name":"DNA repair","termid":"GO:0006281"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00573":null,"SJAG_03048":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006281"},{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0006259","GO:0006281","GO:0008150"],"is_obsolete":false,"name":"negative regulation of DNA repair","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of DNA repair","type":"exact"},{"name":"down-regulation of DNA repair","type":"exact"},{"name":"downregulation of DNA repair","type":"exact"},{"name":"inhibition of DNA repair","type":"narrow"}],"termid":"GO:0045738","terms_by_termid":{"GO:1904332":null,"GO:2001033":null}}


id: PBO:0110342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement component 4B (Chido/Rodgers blood group), copy 2","termid":"PBO:0110342"}


id: FYPO:0005219
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a transcript, i.e. an RNA molecule synthesized on a DNA template by RNA polymerase, is shorter than normal.","definition_xrefs":["PomBase:mah","SO:0000673","PMID:26582768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transcript length","termid":"FYPO:0003048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0003048"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000294","FYPO:0003048"],"is_obsolete":false,"name":"decreased transcript length","synonyms":[{"name":"short transcript","type":"exact"},{"name":"shortened transcript","type":"exact"}],"termid":"FYPO:0005219"}


id: GO:1902097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any positive regulation of transcription from RNA polymerase II promoter that is involved in defense response to Gram-negative bacterium.","definition_xrefs":["PMID:17183709","GOC:TermGenie","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium (obsolete GO:1902097)","synonyms":[{"name":"activation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"activation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"activation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"narrow"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"positive regulation of transcription from Pol II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"positive regulation of transcription from Pol II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter involved in defense response to Gram-negative bacterium","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"narrow"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"exact"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"exact"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"exact"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"related"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in Gram-negative antibacterial peptide activity","type":"related"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacteria","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defence response to Gram-negative bacterium","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacteria","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium","type":"exact"}],"termid":"GO:1902097"}


id: PBO:0083363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene SIR2/YDL042C","termid":"PBO:0083363"}


id: PATO:0000068
data:
  {"annotation_feature_type":"gene","cv_name":"quality","direct_ancestors":[{"relation_name":"is_a","term_name":"quality","termid":"PATO:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"qualitative","termid":"PATO:0000068"}


id: PBO:0035927
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_eMTOC_assembly","termid":"PBO:0035927"}


id: PR:O94667
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- prf1 gene.","definition_xrefs":["UniProtKB:O94667","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase-associated protein C651.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.09c","synonyms":[{"name":"Spom972h-prf1","type":"exact"},{"name":"protein RTF1 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94667"}


id: PBO:0082499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of class II HDA1 histone deacetylase complex; role in azole resistance via Hsp90p, and in heat shock response; Hda1p interacts with Hda2p-Hda3p subcomplex to form an active tetramer; deletion increases histone H2B, H3 and H4 acetylation; the HDA1 histone deacetylase complex regulates aging through trehalose metabolism","termid":"PBO:0082499"}


id: PBO:0086470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative mitochondrial protein of unknown function","termid":"PBO:0086470"}


id: PBO:0072785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-antigen visual arrestin","termid":"PBO:0072785"}


id: GO:0014866
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the skeletal myofibril over time, from its formation to the mature structure. A skeletal myofibril is a myofibril specific to skeletal muscle cells.","definition_xrefs":["GOC:ef","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myofibril assembly","termid":"GO:0030239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0030036","GO:0008150","GO:0007010","GO:0044085"],"is_obsolete":false,"name":"skeletal myofibril assembly","termid":"GO:0014866"}


id: PBO:0051041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy constant alpha 2 (A2m marker)","termid":"PBO:0051041"}


id: GO:1901305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of spermidine biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:pm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biosynthetic process","termid":"GO:0009890"},{"relation_name":"is_a","term_name":"negative regulation of amine metabolic process","termid":"GO:0033239"},{"relation_name":"is_a","term_name":"regulation of spermidine biosynthetic process","termid":"GO:1901304"},{"relation_name":"negatively_regulates","term_name":"spermidine biosynthetic process","termid":"GO:0008295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of spermidine biosynthetic process","synonyms":[{"name":"down regulation of spermidine anabolism","type":"exact"},{"name":"down regulation of spermidine biosynthesis","type":"exact"},{"name":"down regulation of spermidine biosynthetic process","type":"exact"},{"name":"down regulation of spermidine formation","type":"exact"},{"name":"down regulation of spermidine synthesis","type":"exact"},{"name":"down-regulation of spermidine anabolism","type":"exact"},{"name":"down-regulation of spermidine biosynthesis","type":"exact"},{"name":"down-regulation of spermidine biosynthetic process","type":"exact"},{"name":"down-regulation of spermidine formation","type":"exact"},{"name":"down-regulation of spermidine synthesis","type":"exact"},{"name":"downregulation of spermidine anabolism","type":"exact"},{"name":"downregulation of spermidine biosynthesis","type":"exact"},{"name":"downregulation of spermidine biosynthetic process","type":"exact"},{"name":"downregulation of spermidine formation","type":"exact"},{"name":"downregulation of spermidine synthesis","type":"exact"},{"name":"inhibition of spermidine anabolism","type":"exact"},{"name":"inhibition of spermidine biosynthesis","type":"exact"},{"name":"inhibition of spermidine biosynthetic process","type":"narrow"},{"name":"inhibition of spermidine formation","type":"exact"},{"name":"inhibition of spermidine synthesis","type":"exact"},{"name":"negative regulation of spermidine anabolism","type":"exact"},{"name":"negative regulation of spermidine biosynthesis","type":"exact"},{"name":"negative regulation of spermidine formation","type":"exact"},{"name":"negative regulation of spermidine synthesis","type":"exact"}],"termid":"GO:1901305"}


id: PBO:0035764
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_heterochromatin_assembly_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0035764"}


id: GO:0048399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of intermediate mesoderm cell fate specification.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesodermal cell fate specification","termid":"GO:0042661"},{"relation_name":"regulates","term_name":"intermediate mesodermal cell fate specification","termid":"GO:0048398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of intermediate mesodermal cell fate specification","termid":"GO:0048399"}


id: PBO:0077598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane serine protease 11A","termid":"PBO:0077598"}


id: GO:0042583
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Specialized secretory vesicle found in the cells of adrenal glands and various other organs, which is concerned with the synthesis, storage, metabolism, and secretion of epinephrine and norepinephrine.","definition_xrefs":["PMID:1961743","PMID:19158310","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule","termid":"GO:0030141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"chromaffin granule","termid":"GO:0042583"}


id: PBO:0071161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a","termid":"PBO:0071161"}


id: FYPO:0005861
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which CCR4-NOT complex binding by a gene product (usually a protein) in a mutant does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PMID:26942678","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein-protein interaction","termid":"FYPO:0000705"},{"relation_name":"is_a","term_name":"abnormal protein complex binding","termid":"FYPO:0003591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000652","FYPO:0000702"],"is_obsolete":false,"name":"abolished CCR4-NOT complex binding","synonyms":[{"name":"CCR4-NOT complex binding abolished","type":"exact"}],"termid":"FYPO:0005861"}


id: FYPO:0001806
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which guanine import into the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transport","termid":"FYPO:0001071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal guanine import","synonyms":[{"name":"normal guanine import across plasma membrane","type":"exact"},{"name":"normal guanine import during mitotic cell cycle","type":"related"},{"name":"normal guanine import during vegetative growth","type":"exact"},{"name":"normal guanine import into cell","type":"exact"},{"name":"normal guanine uptake","type":"exact"}],"termid":"FYPO:0001806"}


id: GO:0003935
data:
  {"annotated_genes":["SJAG_04711","SJAG_00376"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83511,97233],"is_not":false,"summary":null,"term":"GO:0003935"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: GTP + 4 H2O = 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + formate + 3 H+ + 2 phosphate.","definition_xrefs":["RHEA:23704","EC:3.5.4.25"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTP cyclohydrolase activity","termid":"GO:0003933"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00376":null,"SJAG_04711":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016810"],"is_obsolete":false,"name":"GTP cyclohydrolase II activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R00425","MetaCyc:GTP-CYCLOHYDRO-II-RXN"],"synonyms":[{"name":"GTP 7,8-8,9-dihydrolase (diphosphate-forming)","type":"related"},{"name":"GTP-8-formylhydrolase activity","type":"related"},{"name":"guanosine triphosphate cyclohydrolase II","type":"related"}],"termid":"GO:0003935","terms_by_termid":{"GO:0003935":null}}


id: PBO:0031026
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_concentration_of_M-factor_in_growth_medium","termid":"PBO:0031026"}


id: PBO:0061917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily D member 5","termid":"PBO:0061917"}


id: PBO:0091347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"name descrption, ANKyrin repeats","termid":"PBO:0091347"}


id: PBO:0039499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 22","termid":"PBO:0039499"}


id: FYECO:0000162
data:
  {"alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02409","name":"stc1delta","uniquename":"SJAG_02409:allele-1"},"SJAG_02594:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02594","name":"arb1delta","uniquename":"SJAG_02594:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_02668:allele-1":{"allele_type":"amino_acid_mutation","description":"R77W","gene_uniquename":"SJAG_02668","name":"mpe1-R77W","uniquename":"SJAG_02668:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03118:allele-2":{"allele_type":"nonsense_mutation","description":"aa61->stop","gene_uniquename":"SJAG_03118","name":"frameshift","uniquename":"SJAG_03118:allele-2"},"SJAG_03356:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03356","name":"rdp1delta","uniquename":"SJAG_03356:allele-1"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"},"SJAG_03916:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03916","name":"chp1delta","uniquename":"SJAG_03916:allele-1"},"SJAG_04061:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04061","name":"arb2delta","uniquename":"SJAG_04061:allele-1"},"SJAG_04574:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04574","name":"clr4delta","uniquename":"SJAG_04574:allele-1"}},"annotation_feature_type":"gene","cv_annotations":{"fission_yeast_phenotype_condition":[{"annotations":[115591,115592,115593,115594,115640,115586,115385,115731,115779,115643,115590,115384,115771,115589,115588,115773,115600,115602,115599,115601,115579,115580,115581,115582,115583,115584,115585,115595,115596,115769,115772,115770],"is_not":false,"summary":null,"term":"FYECO:0000162"}]},"cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in rich medium containing yeast extract and other components. The concentration of glucose is high (eg around 8%).","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping rich medium","termid":"FYECO:0000080"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00426":null,"SJAG_01330":null,"SJAG_01745":null,"SJAG_02392":null,"SJAG_02409":null,"SJAG_02594":null,"SJAG_02621":null,"SJAG_02668":null,"SJAG_02763":null,"SJAG_03118":null,"SJAG_03356":null,"SJAG_03449":null,"SJAG_03689":null,"SJAG_03916":null,"SJAG_04061":null,"SJAG_04574":null},"genotype_count":19,"genotypes_by_uniquename":{"ago1delta":{"display_name":"ago1delta","display_uniquename":"ago1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]}]},"ago1delta__leo1delta":{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"arb1delta":{"display_name":"arb1delta","display_uniquename":"arb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02594:allele-1","expression":"Null"}]}]},"arb2delta":{"display_name":"arb2delta","display_uniquename":"arb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04061:allele-1","expression":"Null"}]}]},"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]},"chp1delta":{"display_name":"chp1delta","display_uniquename":"chp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03916:allele-1","expression":"Null"}]}]},"clr4delta":{"display_name":"clr4delta","display_uniquename":"clr4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]}]},"clr4delta__leo1delta":{"display_name":"clr4delta leo1delta","display_uniquename":"clr4delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},"dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type":{"display_name":"dcr1delta frameshift(aa61->stop)","display_uniquename":"dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-2","expression":"Not assayed or wild type"}]}]},"dcr1delta__leo1delta":{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"rdp1delta":{"display_name":"rdp1delta","display_uniquename":"rdp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03356:allele-1","expression":"Null"}]}]},"stc1delta":{"display_name":"stc1delta","display_uniquename":"stc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02409:allele-1","expression":"Null"}]}]}},"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_03689","SJAG_02668","SJAG_03118","SJAG_02621","SJAG_04574"],"name":"high glucose YES","references_by_uniquename":{"PMID:21802294":null,"PMID:24184107":null,"PMID:25318672":null,"PMID:25866389":null,"PMID:26774782":null,"PMID:35226668":null},"single_locus_annotated_genes":["SJAG_01745","SJAG_02409","SJAG_03356","SJAG_00426","SJAG_02392","SJAG_03449","SJAG_03689","SJAG_04061","SJAG_01330","SJAG_02763","SJAG_03916","SJAG_04574","SJAG_02594","SJAG_02621"],"single_locus_genotype_uniquenames":["pom1delta","chp1delta","dcr1delta","stc1delta","man1delta","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1delta","mad2delta","arb1delta","ago1delta","lem2delta","rdp1delta","arb2delta","clr4delta"],"synonyms":[{"name":"high glucose rich medium","type":"related"}],"termid":"FYECO:0000162","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000162":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null}}


id: PBO:0083707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER-luminal alpha 1,3 glucosyltransferase; involved in transfer of oligosaccharides from dolichyl pyrophosphate to asparagine residues of proteins during N-linked protein glycosylation; C998T transition in human ortholog ALG6 causes carbohydrate-deficient glycoprotein syndrome type-Ic; wild-type human ortholog ALG6 can partially complement yeast alg6 mutant","termid":"PBO:0083707"}


id: PBO:0043817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copine 8","termid":"PBO:0043817"}


id: PBO:0048459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucagon","termid":"PBO:0048459"}


id: GO:0047662
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4(or 2)-aminobenzoate = aniline + CO2.","definition_xrefs":["MetaCyc:AMINOBENZOATE-DECARBOXYLASE-RXN","EC:4.1.1.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"aminobenzoate decarboxylase activity","secondary_identifiers":["RHEA:24200"],"synonyms":[{"name":"aminobenzoate carboxy-lyase (aniline-forming)","type":"related"},{"name":"aminobenzoate carboxy-lyase activity","type":"related"}],"termid":"GO:0047662"}


id: GO:0047672
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: anthranilate + benzoyl-CoA = N-benzoylanthranilate + CoA.","definition_xrefs":["EC:2.3.1.144","RHEA:21600"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"anthranilate N-benzoyltransferase activity","secondary_identifiers":["KEGG_REACTION:R02453","MetaCyc:ANTHRANILATE-N-BENZOYLTRANSFERASE-RXN"],"synonyms":[{"name":"benzoyl-CoA:anthranilate N-benzoyltransferase","type":"broad"}],"termid":"GO:0047672"}


id: PBO:0058736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6861","termid":"PBO:0058736"}


id: PBO:0081115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger AN1-type containing 4","termid":"PBO:0081115"}


id: GO:0015765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of methylgalactoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Methylgalactoside is a compound in which the H of the OH group on carbon-1 of galactose is replaced by a methyl group.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside transport","termid":"GO:1901656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"methylgalactoside transport","termid":"GO:0015765"}


id: PBO:0072472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 1","termid":"PBO:0072472"}


id: PBO:0088152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-ATPase assembly factor; functions with other V-ATPase assembly factors in the ER to efficiently assemble the V-ATPase membrane sector (V0); protein abundance increases in response to DNA replication stress","termid":"PBO:0088152"}


id: GO:1902176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of an oxidative stress-induced intrinsic apoptotic signaling pathway.","definition_xrefs":["GOC:BHF","GOC:TermGenie","PMID:11672522","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of oxidative stress-induced intrinsic apoptotic signaling pathway","termid":"GO:1902175"},{"relation_name":"is_a","term_name":"negative regulation of intrinsic apoptotic signaling pathway","termid":"GO:2001243"},{"relation_name":"negatively_regulates","term_name":"intrinsic apoptotic signaling pathway in response to oxidative stress","termid":"GO:0008631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway","synonyms":[{"name":"down regulation of intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"down-regulation of intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"downregulation of intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"},{"name":"inhibition of intrinsic apoptotic signaling pathway in response to oxidative stress","type":"narrow"},{"name":"negative regulation of intrinsic apoptotic signaling pathway in response to oxidative stress","type":"exact"}],"termid":"GO:1902176"}


id: PBO:0055812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophosphatidylglycerol acyltransferase 1 pseudogene 1","termid":"PBO:0055812"}


id: GO:1901161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of primary amino compound.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"primary amino compound metabolic process","termid":"GO:1901160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"primary amino compound catabolic process","synonyms":[{"name":"primary amino compound breakdown","type":"exact"},{"name":"primary amino compound catabolism","type":"exact"},{"name":"primary amino compound degradation","type":"exact"}],"termid":"GO:1901161"}


id: PBO:0004887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdc48-Ufd1-Npl4 complex component Ufd1 (predicted)","termid":"PBO:0004887"}


id: PBO:0051009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin superfamily DCC subclass member 4","termid":"PBO:0051009"}


id: GO:0060778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the primary leaflet attains its shape. A primary leaflet is a leaflet that develops directly from the rachis.","definition_xrefs":["GOC:sdb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leaflet morphogenesis","termid":"GO:0060794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"primary leaflet morphogenesis","termid":"GO:0060778"}


id: PBO:0054569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1971","termid":"PBO:0054569"}


id: GO:0060380
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of binding to single-stranded telomeric DNA.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of telomeric DNA binding","termid":"GO:1904742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of single-stranded telomeric DNA binding","synonyms":[{"name":"regulation of telomeric ssDNA binding","type":"exact"}],"termid":"GO:0060380"}


id: PBO:0076964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TGFB induced factor homeobox 1 pseudogene 1","termid":"PBO:0076964"}


id: PBO:0047024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A27, pseudogene","termid":"PBO:0047024"}


id: GO:0035417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the rate or extent of mitotic prometaphase, the stage following prophase in mitosis (in higher eukaryotes) during which the nuclear envelope is disrupted and breaks into membrane vesicles, and the spindle microtubules enter the nuclear region.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of mitotic prometaphase (obsolete GO:0035417)","synonyms":[{"name":"negative regulation of mitotic prometaphase","type":"exact"}],"termid":"GO:0035417"}


id: GO:0090326
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate, or extent of the self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement.","definition_xrefs":["GOC:dph","GOC:kmv","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of locomotion","termid":"GO:0040017"},{"relation_name":"is_a","term_name":"positive regulation of behavior","termid":"GO:0048520"},{"relation_name":"is_a","term_name":"regulation of locomotion involved in locomotory behavior","termid":"GO:0090325"},{"relation_name":"positively_regulates","term_name":"locomotion involved in locomotory behavior","termid":"GO:0031987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of locomotion involved in locomotory behavior","termid":"GO:0090326"}


id: FYPO:0003802
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 in telomeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K14 acetylation during vegetative growth","termid":"FYPO:0005310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002274","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H3-K14 acetylation at telomere during vegetative growth","synonyms":[{"name":"increased histone H3-K14 acetylation at telomere during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003802"}


id: PBO:0091395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"K48-linkage specific deubiquitinase","termid":"PBO:0091395"}


id: GO:0023041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an activated neuronal cell receptor conveys information down a signaling pathway, resulting in a change in the function or state of a cell. This process may be intracellular or intercellular.","definition_xrefs":["GOC:mtg_signal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"neuronal signal transduction","termid":"GO:0023041"}


id: GO:0052111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of an anatomical structure of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disruption of anatomical structure in another organism","termid":"GO:0141060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host anatomical structure","synonyms":[{"name":"cytopathogenic effect","type":"related"},{"name":"disruption by symbiont of host anatomical structure","type":"exact"},{"name":"modification by symbiont of host anatomical structure","type":"exact"},{"name":"modification by symbiont of host structure","type":"related"}],"termid":"GO:0052111"}


id: GO:1905674
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of adaptive immune memory response.","definition_xrefs":["GOC:TermGenie","PMID:26831526","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of adaptive immune response","termid":"GO:0002819"},{"relation_name":"regulates","term_name":"adaptive immune memory response","termid":"GO:0090716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of adaptive immune memory response","termid":"GO:1905674"}


id: PR:O59675
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps902 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59675"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S9-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.12","synonyms":[{"name":"Spom972h-rps902","type":"exact"}],"termid":"PR:O59675"}


id: PBO:0029852
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_heterochromatin_during_vegetative_growth","termid":"PBO:0029852"}


id: PR:O14137
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC3C7.13c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose-6-phosphate 1-dehydrogenase C7.13c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3C7.13c","synonyms":[{"name":"G6PD (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPAC3C7.13c","type":"exact"}],"termid":"PR:O14137"}


id: PBO:0063112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A)-specific ribonuclease","termid":"PBO:0063112"}


id: PBO:0034071
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_apparent_orthology_relationship_with","termid":"PBO:0034071"}


id: PR:Q10217
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An acyl carrier protein, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR20863:SF5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl carrier protein, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.09","secondary_identifiers":["UniProtKB:Q10217"],"synonyms":[{"name":"ACP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NDUFAB1","type":"exact"}],"termid":"PR:Q10217"}


id: PBO:0057079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR181A1 host gene","termid":"PBO:0057079"}


id: PBO:0044709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 10","termid":"PBO:0044709"}


id: PBO:0066734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 31","termid":"PBO:0066734"}


id: PBO:0090131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type ATPase V0 subunit c' (proteolipid subunit)","termid":"PBO:0090131"}


id: PBO:0005135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex subunit Not2 (predicted)","termid":"PBO:0005135"}


id: PR:Q7LKZ7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lvs1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q7LKZ7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beige protein homolog 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC28E12.06c","synonyms":[{"name":"Spom972h-lvs1","type":"exact"}],"termid":"PR:Q7LKZ7"}


id: PBO:0077564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 270","termid":"PBO:0077564"}


id: PBO:0082223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha-arrestin, component of the Rsp5p E3-ubiquitin ligase complex; ubiquitin-binding adaptor involved in intracellular amino acid permease sorting, functions in heat shock element mediated gene expression, essential for growth in stress conditions; BUL2 has a paralog, BUL1, that arose from the whole genome duplication","termid":"PBO:0082223"}


id: PBO:0055011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2426","termid":"PBO:0055011"}


id: PBO:0042140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCL3 antisense RNA 1","termid":"PBO:0042140"}


id: GO:0006127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesise glycerol 3-phosphate in the cytosol; this compound is then transported into the mitochondria where it is converted to dihydroxyacetone phosphate (DHAP) using FAD; DHAP then returns to the cytosol to complete the cycle.","definition_xrefs":["GOC:jl","GOC:mtg_electron_transport","PMID:16368075","ISBN:0716720094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NADH oxidation","termid":"GO:0006116"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"quinone metabolic process","termid":"GO:1901661"},{"relation_name":"part_of","term_name":"respiratory electron transport chain","termid":"GO:0022904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0006091","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"glycerophosphate shuttle","secondary_identifiers":["MetaCyc:PWY-6118"],"termid":"GO:0006127"}


id: PBO:0113393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; physical interaction with Atg27p suggests a possible role in autophagy; targeted to vacuole via AP-3 pathway","termid":"PBO:0113393"}


id: PBO:0018115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unconventional prefoldin chaperone involved protein complex assembly Uri1 (predicted)","termid":"PBO:0018115"}


id: PBO:0040700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 like 1","termid":"PBO:0040700"}


id: PBO:0042083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 150","termid":"PBO:0042083"}


id: internal:exact
data:
  {"annotation_feature_type":"gene","cv_name":"synonym_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exact","termid":"internal:exact"}


id: PBO:0029532
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_septum","termid":"PBO:0029532"}


id: PBO:0002128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoprotein phosphatase (predicted)","termid":"PBO:0002128"}


id: PBO:0049571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B histone pseudogene 8","termid":"PBO:0049571"}


id: PATO:0002208
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon.","definition_xrefs":["thefreedictionary:http://www.thefreedictionary.com/spoon-shaped"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concave 3-D shape","termid":"PATO:0002008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spoon-shaped","termid":"PATO:0002208"}


id: PBO:0047745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibronectin type III domain containing 9","termid":"PBO:0047745"}


id: GO:0005853
data:
  {"annotated_genes":["SJAG_04157","SJAG_01851","SJAG_02493","SJAG_02180"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89632,89633,89634,108546,108547,108548,110880,114643,114644,114645],"is_not":false,"summary":null,"term":"GO:0005853"}]},"cv_name":"cellular_component","definition":"A multisubunit nucleotide exchange complex that binds GTP and aminoacyl-tRNAs, and catalyzes their codon-dependent placement at the A-site of the ribosome. In humans, the complex is composed of four subunits, alpha, beta, delta and gamma.","definition_xrefs":["GOC:jl","PMID:10216950"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01851":null,"SJAG_02180":null,"SJAG_02493":null,"SJAG_04157":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005853","terms_by_termid":{"GO:0005853":null}}


id: PBO:0044195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cathepsin D","termid":"PBO:0044195"}


id: PBO:0055039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2454","termid":"PBO:0055039"}


id: GO:0102574
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H2O + a 3-oxo-myristoyl-[acp] = 3-oxo-myristate + H+ + a holo-[acyl-carrier protein].","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-myristoyl-ACP hydrolase activity (obsolete GO:0102574)","secondary_identifiers":["MetaCyc:RXN-15280"],"termid":"GO:0102574"}


id: CHEBI:22907
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bleomycin","termid":"CHEBI:22907"}


id: PBO:0051700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol polyphosphate-4-phosphatase type II B","termid":"PBO:0051700"}


id: GO:0006932
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The translocation of the cell body forward during cell migration, mediated by tractional force on its substrate and tension in the cortical cytoskeleton. Adhesions transmit propulsive forces and serve as traction points over which the cell moves.","definition_xrefs":["ISBN:0815316194","PMID:11944043","PMID:14657486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic actin-based contraction involved in cell motility","termid":"GO:0060327"},{"relation_name":"part_of","term_name":"ameboidal-type cell migration","termid":"GO:0001667"},{"relation_name":"part_of","term_name":"substrate-dependent cell migration","termid":"GO:0006929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"substrate-dependent cell migration, cell contraction","synonyms":[{"name":"substrate-bound cell migration, cell contraction","type":"exact"}],"termid":"GO:0006932"}


id: PBO:0066692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RMDN2 antisense RNA 1","termid":"PBO:0066692"}


id: PBO:0073426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor 3a subunit 2","termid":"PBO:0073426"}


id: GO:0045203
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the cell outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:go_curators","GOC:dos","GOC:mtg_sensu"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of cell outer membrane (obsolete GO:0045203)","synonyms":[{"name":"integral to cell outer membrane","type":"narrow"},{"name":"integral to external membrane","type":"related"},{"name":"integral to outer membrane","type":"related"}],"termid":"GO:0045203"}


id: GO:0060562
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a tube are generated and organized from an epithelium. Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"},{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial tube morphogenesis","termid":"GO:0060562"}


id: PBO:0083766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential N-acetylglucosamine-phosphate mutase; converts GlcNAc-6-P to GlcNAc-1-P, which is a precursor for the biosynthesis of chitin and for the formation of N-glycosylated mannoproteins and glycosylphosphatidylinositol anchors","termid":"PBO:0083766"}


id: MOD:01696
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with an acyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acylated residue","termid":"MOD:00670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"alpha-amino acylated residue","termid":"MOD:01696"}


id: GO:0046537
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate; this reaction does not require the cofactor 2,3-bisphosphoglycerate.","definition_xrefs":["EC:5.4.2.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoglycerate mutase activity","termid":"GO:0004619"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity","secondary_identifiers":["MetaCyc:3PGAREARR-RXN"],"termid":"GO:0046537"}


id: PBO:0065022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 3 pseudogene 1","termid":"PBO:0065022"}


id: PBO:0049002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase 1","termid":"PBO:0049002"}


id: PBO:0001080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human C17orf28 ortholog 1","termid":"PBO:0001080"}


id: GO:0014002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of an astrocyte over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function.","definition_xrefs":["GOC:dgh","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell development","termid":"GO:0021782"},{"relation_name":"part_of","term_name":"astrocyte differentiation","termid":"GO:0048708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"astrocyte development","synonyms":[{"name":"astrocyte cell development","type":"exact"}],"termid":"GO:0014002"}


id: GO:0001092
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a general RNA polymerase II transcription factor belonging to the TFIIA complex, one of the complexes involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.","definition_xrefs":["PMID:16858867","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II general transcription initiation factor binding","termid":"GO:0001091"},{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"TFIIA-class transcription factor complex binding","synonyms":[{"name":"TFIIA-class transcription factor binding","type":"exact"}],"termid":"GO:0001092"}


id: PBO:0031812
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_biofilm_formation","termid":"PBO:0031812"}


id: PBO:0039538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 36B pseudogene 2","termid":"PBO:0039538"}


id: PBO:0084713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane insertase; mediates the insertion of both mitochondrial- and nuclear-encoded proteins from the matrix into the inner membrane; also has a role in insertion of carrier proteins into the inner membrane; acts as a voltage-gated ion channel, activated by substrate peptides; interacts with mitochondrial ribosomes; conserved from bacteria to animals","termid":"PBO:0084713"}


id: PBO:0057535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 651","termid":"PBO:0057535"}


id: GO:0010538
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Modulates the activity of the Hsp27 molecular chaperone.","definition_xrefs":["GOC:tb","PMID:11546764","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete Hsp27 protein regulator activity (obsolete GO:0010538)","synonyms":[{"name":"Hsp27 protein regulator activity","type":"exact"}],"termid":"GO:0010538"}


id: PR:Q10369
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- snt1 gene.","definition_xrefs":["UniProtKB:Q10369","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C22E12.19 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.19","synonyms":[{"name":"Spom972h-snt1","type":"exact"}],"termid":"PR:Q10369"}


id: PBO:0054995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2410","termid":"PBO:0054995"}


id: GO:0071345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cytokine stimulus","termid":"GO:0071345"}


id: PBO:0072390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 16","termid":"PBO:0072390"}


id: PBO:0066585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member B","termid":"PBO:0066585"}


id: GO:1902617
data:
  {"annotated_genes":["SJAG_01973"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96902,109896],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140114"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluoride stimulus.","definition_xrefs":["GOC:TermGenie","GO_REF:0000071","PMID:8138152","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01973":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to fluoride","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1902617","terms_by_termid":{"GO:0140114":null}}


id: GO:0032115
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glucitol + NADP+ = L-sorbose + H+ + NADPH. The reaction may occur, to a minor extent, in the reverse direction.","definition_xrefs":["EC:1.1.1.289","RHEA:14609"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"sorbose reductase activity","secondary_identifiers":["MetaCyc:1.1.1.289-RXN","KEGG_REACTION:R07346"],"synonyms":[{"name":"D-glucitol:NADP+ oxidoreductase activity","type":"related"},{"name":"Sou1p","type":"related"}],"termid":"GO:0032115"}


id: PBO:0084639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mg2+-dependent phosphatidate (PA) phosphatase; dephosphorylates PA to yield diacylglycerol; regulates phospholipid synthesis, nuclear/ER membrane growth, lipid droplet formation, triacylglycerol synthesis, vacuolar homeostasis and cell wall integrity; phosphorylated by Pho85p/Pho80p, Cdc28p/Cyclin B, PKA, PKC, and CKII, regulating activity, localization, and proteosomal degradation; homolog of mammalian lipins 1 and 2; human homologs LPIN1, LPIN2, LPIN3 complement the null","termid":"PBO:0084639"}


id: PBO:0062414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 43 pseudogene","termid":"PBO:0062414"}


id: GO:0004620
data:
  {"annotated_genes":["SJAG_04323","SJAG_02100","SJAG_02093","SJAG_04292","SJAG_04110","SJAG_02091","SJAG_01519","SJAG_03204","SJAG_01219","SJAG_00199","SJAG_01198","SJAG_02161","SJAG_00321"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88591,110006],"is_not":false,"summary":null,"term":"GO:0004620"},{"annotations":[104948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052712"},{"annotations":[99084,113155,87904,110914,87912,96899,86150,110219,89963],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004622"},{"annotations":[104949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052714"},{"annotations":[91985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070290"},{"annotations":[93837],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034479"},{"annotations":[89419],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004435"},{"annotations":[110915,87905,95833,86151,87913,96900,99085],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004623"},{"annotations":[91987],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004630"},{"annotations":[104950],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004767"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of a glycerophospholipid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipase activity","termid":"GO:0016298"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00199":null,"SJAG_00321":null,"SJAG_01198":null,"SJAG_01219":null,"SJAG_01519":null,"SJAG_02091":null,"SJAG_02093":null,"SJAG_02100":null,"SJAG_02161":null,"SJAG_03204":null,"SJAG_04110":null,"SJAG_04292":null,"SJAG_04323":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"phospholipase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-6786650","Reactome:R-HSA-6792445"],"termid":"GO:0004620","terms_by_termid":{"GO:0004435":null,"GO:0004620":null,"GO:0004622":null,"GO:0004623":null,"GO:0004630":null,"GO:0004767":null,"GO:0034479":null,"GO:0052712":null,"GO:0052714":null,"GO:0070290":null}}


id: PBO:0068103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 410","termid":"PBO:0068103"}


id: PBO:0002534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFS family transmembrane transporter Mfs1 (predicted)","termid":"PBO:0002534"}


id: PBO:0058356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4729","termid":"PBO:0058356"}


id: FYPO:0001322
data:
  {"alleles_by_uniquename":{"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01834:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01834","name":"pom152delta","uniquename":"SJAG_01834:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"},"SJAG_04280:allele-1":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"},"SJAG_04703:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04703","name":"for3delta","uniquename":"SJAG_04703:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001369"},{"annotations":[115618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000118"}],"single_locus_phenotype":[{"annotations":[115770],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000356"},{"annotations":[115783,115778,115385,115785],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003779"},{"annotations":[115769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006433"},{"annotations":[115672],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003315"},{"annotations":[115643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002026"},{"annotations":[115726,115741,115727,115738,115729],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001784"},{"annotations":[115737,115728,115725,115724,115740,115732],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001556"},{"annotations":[115326],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003727"},{"annotations":[115784,115780,115781,115782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004890"},{"annotations":[115650],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0003976"},{"annotations":[115408],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001369"},{"annotations":[115607,115608],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000118"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the amount, distribution, morphology, or other physical characteristic of a cell part is abnormal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component","termid":"FYPO:0000287"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative 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subcellular component during mitotic cell cycle","type":"related"},{"name":"abnormal subcellular structure during vegetative growth","type":"related"}],"termid":"FYPO:0001322","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000338":null,"FYPO:0000118":null,"FYPO:0000356":null,"FYPO:0001369":null,"FYPO:0001556":null,"FYPO:0001784":null,"FYPO:0002026":null,"FYPO:0003315":null,"FYPO:0003727":null,"FYPO:0003779":null,"FYPO:0003976":null,"FYPO:0004890":null,"FYPO:0006433":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PBO:0065310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 30, pseudogene","termid":"PBO:0065310"}


id: GO:0036194
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A prolongation or process extending from a muscle cell. A muscle cell is a mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns.","definition_xrefs":["GOC:kmv","PMID:15930100","PMID:22464329","CL:0000187"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"muscle cell projection","synonyms":[{"name":"muscle arm","type":"narrow"},{"name":"myocyte projection","type":"exact"},{"name":"myopodia","type":"narrow"}],"termid":"GO:0036194"}


id: PBO:0051272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa joining 3","termid":"PBO:0051272"}


id: FYPO:0002174
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of an RNA catabolic process that specifically degrades DSR-containing RNA molecules is decreased. A DSR (determinant of selective removal) is a region that is often found near the 3' end of meiosis-specific transcripts, usually contains one or more copies of the motif U(U/C/G)AAAC, and targets RNAs for degradation in vegetatively growing cells.","definition_xrefs":["PMID:22645662","PMID:22046364","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA catabolic process during vegetative growth","termid":"FYPO:0002137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000294","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased degradation of DSR-containing RNA","synonyms":[{"name":"decreased RNA catabolic process, DSR-containing RNA","type":"exact"},{"name":"decreased catabolism of DSR-containing RNA","type":"exact"},{"name":"decreased degradation of DSR-containing RNA during mitotic cell cycle","type":"related"},{"name":"decreased degradation of DSR-containing RNA during vegetative growth","type":"exact"},{"name":"reduced degradation of DSR-containing RNA","type":"exact"}],"termid":"FYPO:0002174"}


id: PBO:0038532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 6, acylglycerol lipase","termid":"PBO:0038532"}


id: GO:0021836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The creation and reception of signals that repel olfactory bulb interneurons from the subventricular zone as a component process in tangential migration.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dph","PMID:12626695","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative chemotaxis","termid":"GO:0050919"},{"relation_name":"part_of","term_name":"postnatal olfactory bulb interneuron migration","termid":"GO:0021827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chemorepulsion involved in postnatal olfactory bulb interneuron migration","synonyms":[{"name":"negative chemotaxis involved in postnatal olfactory bulb interneuron migration","type":"exact"}],"termid":"GO:0021836"}


id: FYPO:0003085
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which replication fork arrest at the mating-type locus occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork arrest at mating-type locus","termid":"FYPO:0003083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000293","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased replication fork arrest at mating-type locus","synonyms":[{"name":"decreased replication fork arrest at mating-type locus during mitotic cell cycle","type":"related"},{"name":"decreased replication fork arrest at mating-type locus during vegetative growth","type":"exact"},{"name":"reduced replication fork arrest at mating-type locus","type":"exact"}],"termid":"FYPO:0003085"}


id: PBO:0056988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 31","termid":"PBO:0056988"}


id: GO:0048277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The initial attachment of a transport vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during a non-exocytotic process.","definition_xrefs":["GOC:jid"],"gene_count":0,"genotype_count":0,"name":"obsolete nonexocytotic vesicle docking (obsolete GO:0048277)","synonyms":[{"name":"non-exocytotic vesicle docking","type":"exact"},{"name":"nonexocytotic vesicle docking","type":"exact"}],"termid":"GO:0048277"}


id: PBO:0062614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily V member 2 pseudogene","termid":"PBO:0062614"}


id: PBO:0039512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 30B like","termid":"PBO:0039512"}


id: PBO:0073674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal regulatory protein beta 3, pseudogene","termid":"PBO:0073674"}


id: PBO:0088390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-V, dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase","termid":"PBO:0088390"}


id: PBO:0045521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystrobrevin beta","termid":"PBO:0045521"}


id: PBO:0063846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidase inhibitor 16","termid":"PBO:0063846"}


id: PBO:0003145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L8 (predicted)","termid":"PBO:0003145"}


id: PBO:0080781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related, Y-linked pseudogene 1","termid":"PBO:0080781"}


id: PBO:0054439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1836","termid":"PBO:0054439"}


id: PBO:0049527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A.Z variant histone 2","termid":"PBO:0049527"}


id: PBO:0088484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclophilin family peptidyl-prolyl cis-trans isomerase, RRM-containing Rct1","termid":"PBO:0088484"}


id: PBO:0088157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vesicle membrane receptor protein (v-SNARE); involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; Snc2p levels regulated by Vps45p; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins; SNC2 has a paralog, SNC1, that arose from the whole genome duplication","termid":"PBO:0088157"}


id: PBO:0051006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin (CD79A) binding protein 1 pseudogene 4","termid":"PBO:0051006"}


id: GO:0097270
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The temporary recovery of response to a stimulus when a novel stimulus is added.","definition_xrefs":["PMID:11390637","Wikipedia:Habituation","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nonassociative learning","termid":"GO:0046958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dishabituation","termid":"GO:0097270"}


id: GO:0044088
data:
  {"annotated_genes":["SJAG_05289","SJAG_03137","SJAG_03851","SJAG_03386","SJAG_02433","SJAG_03072"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97535],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061192"},{"annotations":[104693,104783],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000786"},{"annotations":[93691,106403],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061191"},{"annotations":[93457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032889"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a vacuole.","definition_xrefs":["GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle organization","termid":"GO:0033043"},{"relation_name":"regulates","term_name":"vacuole organization","termid":"GO:0007033"}],"gene_count":6,"genes_by_uniquename":{"SJAG_02433":null,"SJAG_03072":null,"SJAG_03137":null,"SJAG_03386":null,"SJAG_03851":null,"SJAG_05289":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vacuole organization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of vacuole biogenesis","type":"related"},{"name":"regulation of vacuole organisation","type":"exact"}],"termid":"GO:0044088","terms_by_termid":{"GO:0032889":null,"GO:0061191":null,"GO:0061192":null,"GO:2000786":null}}


id: PBO:0039028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with GTPase domain, ankyrin repeat and PH domain 4","termid":"PBO:0039028"}


id: PBO:0040995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BOLA3 divergent transcript","termid":"PBO:0040995"}


id: _global:has_component
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_part","termid":"_global:has_part"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_component","secondary_identifiers":["RO:0002180"],"termid":"_global:has_component"}


id: PBO:0029371
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_medial_cortex_during_vegetative_growth","termid":"PBO:0029371"}


id: GO:0009550
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A plasmodesma that consists of a simple, single channel; found predominantly in young tissue and formed as a function of cell plate formation during cytokinesis.","definition_xrefs":["PMID:15012255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasmodesma","termid":"GO:0009506"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"primary plasmodesma","synonyms":[{"name":"simple plasmodesma","type":"exact"}],"termid":"GO:0009550"}


id: MOD:01825
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue sulfhydryl hydrogen with a Thermo Scientific cysTMT6plex-128 reporter+balance group.","definition_xrefs":["PubMed:18688235","URL:http://www.piercenet.com/files/2162220.pdf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysTMT6plex reporter+balance reagent cysteine disulfide","termid":"MOD:01821"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysTMT6plex-128 reporter+balance reagent cysteine disulfide","synonyms":[{"name":"S-(2-{3-[2-(2,6-dimethylpiperidin-1-yl)acetamido]propanamido}ethyl)sulfanyl","type":"exact"},{"name":"cysTMT6plex","type":"related"},{"name":"cysteine-reactive Sixplex Tandem Mass Tag(TM)","type":"related"}],"termid":"MOD:01825"}


id: PBO:0033760
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_duration_of_meiosis_I","termid":"PBO:0033760"}


id: GO:0010254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the floral nectaries over time, from its formation to the mature structure.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"flower development","termid":"GO:0009908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nectary development","termid":"GO:0010254"}


id: PBO:0027460
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_rotenone","termid":"PBO:0027460"}


id: GO:0061648
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the replacement of an existing tooth with another tooth.","definition_xrefs":["PMID:15170864","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"odontogenesis","termid":"GO:0042476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tooth replacement","termid":"GO:0061648"}


id: PBO:0064875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 35","termid":"PBO:0064875"}


id: PBO:0000229
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tandem fusion protein","termid":"PBO:0000229"}


id: SO:0002114
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein_coding_primary_transcript","termid":"SO:0000120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMD_transcript","secondary_identifiers":["http://www.gencodegenes.org/gencode_biotypes.html"],"synonyms":[{"name":"NMD transcript","type":"exact"},{"name":"nonsense mediated decay transcript","type":"exact"},{"name":"protein_coding_NMD","type":"exact"}],"termid":"SO:0002114"}


id: GO:0031864
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an EP1 subtype prostaglandin E2 receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostanoid receptor binding","termid":"GO:0031862"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"EP1 subtype prostaglandin E2 receptor binding","synonyms":[{"name":"EP1 subtype prostaglandin E2 receptor ligand","type":"narrow"},{"name":"prostanoid EP1 receptor binding","type":"exact"}],"termid":"GO:0031864"}


id: PBO:0052628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 6B","termid":"PBO:0052628"}


id: PBO:0029284
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_mitotic_spindle","termid":"PBO:0029284"}


id: SO:0001978
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of sequence where developer information is encoded.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"engineered_region","termid":"SO:0000804"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signature","synonyms":[{"name":"DNA signature","type":"exact"}],"termid":"SO:0001978"}


id: GO:0102671
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-6a-hydroxymaackiain + S-adenosyl-L-methionine = H+ + (+)-pisatin + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.270","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"6a-hydroxymaackiain-3-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-4002","RHEA:35471"],"termid":"GO:0102671"}


id: GO:0046030
data:
  {"annotated_genes":["SJAG_01702","SJAG_00063","SJAG_04545"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[104427],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052659"},{"annotations":[111706],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052829"},{"annotations":[104428,107308],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052658"},{"annotations":[104430],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990640"},{"annotations":[104431],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990648"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: myo-inositol trisphosphate + H2O = myo-inositol bisphosphate + phosphate.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol phosphate phosphatase activity","termid":"GO:0052745"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00063":null,"SJAG_01702":null,"SJAG_04545":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"inositol trisphosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"IP(3) phosphatase activity","type":"exact"},{"name":"IP3 phosphatase activity","type":"exact"}],"termid":"GO:0046030","terms_by_termid":{"GO:0052658":null,"GO:0052659":null,"GO:0052829":null,"GO:1990640":null,"GO:1990648":null}}


id: PBO:0017647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cenp-W ortholog","termid":"PBO:0017647"}


id: PBO:0042221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCNQ pseudogene 2","termid":"PBO:0042221"}


id: GO:0044016
data:
  {"annotated_genes":["SJAG_02990"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95044],"is_not":false,"summary":null,"term":"GO:0044016"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 4) = CoA + histone H3 N6-acetyl-L-lysine (position 4).","definition_xrefs":["PMID:18552846"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3 acetyltransferase activity","termid":"GO:0010484"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02990":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0034212"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0034212","GO:0140096","GO:0003674"],"is_obsolete":false,"name":"histone H3K4 acetyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.3.1.48"],"synonyms":[{"name":"histone H3-K4 acetyltransferase activity","type":"exact"},{"name":"histone acetylase activity (H3-K4 specific)","type":"exact"},{"name":"histone acetyltransferase activity (H3-K4 specific)","type":"exact"},{"name":"histone lysine N-acetyltransferase activity (H3-K4 specific)","type":"exact"}],"termid":"GO:0044016","terms_by_termid":{"GO:0044016":null}}


id: GO:0060854
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of the coordinated growth and sprouting of lymph vessels giving rise to the organized lymphatic system.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branching morphogenesis of an epithelial tube","termid":"GO:0048754"},{"relation_name":"part_of","term_name":"lymphangiogenesis","termid":"GO:0001946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"branching involved in lymph vessel morphogenesis","synonyms":[{"name":"patterning of lymph vessels","type":"broad"}],"termid":"GO:0060854"}


id: PBO:0065943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RACK1 pseudogene 3","termid":"PBO:0065943"}


id: PBO:0113157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HMG-CoA reductase; converts HMG-CoA to mevalonate, a rate-limiting step in sterol biosynthesis; one of two isozymes; overproduction induces assembly of peripheral ER membrane arrays and short nuclear-associated membrane stacks; forms foci at nuclear periphery upon DNA replication stress; primarily expressed on the peri-membrane side of the ER; human homolog HMGCR can complement yeast hmg2 mutant","termid":"PBO:0113157"}


id: PR:O59812
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- zwf2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59812"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose-6-phosphate 1-dehydrogenase C794.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC794.01c","synonyms":[{"name":"G6PD (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-zwf2","type":"exact"}],"termid":"PR:O59812"}


id: PBO:0078338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (CTC) 4-1","termid":"PBO:0078338"}


id: PBO:0111798
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G-patch domain","termid":"PBO:0111798"}


id: PBO:0053506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 489","termid":"PBO:0053506"}


id: GO:0103016
data:
  {"annotated_genes":["SJAG_01302","SJAG_03932","SJAG_00358"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90310,101977,104545],"is_not":false,"summary":null,"term":"GO:0103016"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: AH2 + ATP + S-sulfanyl-L-cysteinyl-[protein] + uridine(34) in tRNA = 2-thiouridine(34) in tRNA + A + AMP + diphosphate + H+ + L-cysteinyl-[protein].","definition_xrefs":["RHEA:47032"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfurtransferase activity","termid":"GO:0016783"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00358":null,"SJAG_01302":null,"SJAG_03932":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0003674","GO:0016782","GO:0140098","GO:0003824","GO:0016740","GO:0140101"],"is_obsolete":false,"name":"tRNA-uridine 2-sulfurtransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN0-2023","EC:2.8.1.13"],"synonyms":[{"name":"tRNA-specific 2-thiouridylase activity","type":"related"},{"name":"tRNA-uracil-34 sulfurtransferase activity","type":"related"}],"termid":"GO:0103016","terms_by_termid":{"GO:0103016":null}}


id: PBO:0044836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 124","termid":"PBO:0044836"}


id: GO:0001888
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-O-(beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl)-L-seryl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-(alpha-D-GlcNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl)-L-seryl-[protein] + H+ + UDP.","definition_xrefs":["RHEA:16221","EC:2.4.1.223"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.223-RXN"],"synonyms":[{"name":"UDP-N-acetyl-D-glucosamine:beta-D-glucuronosyl-(1,3)-beta-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-D-xylosyl-proteoglycan 4IV-alpha-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:beta-D-glucuronosyl-(1->3)-beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl-proteoglycan 4IV-alpha-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"alpha-1,4-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"alpha-N-acetylglucosaminyltransferase I activity","type":"related"},{"name":"alpha1,4-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"glucuronosylgalactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0001888"}


id: PBO:0038552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABHD17A pseudogene 7","termid":"PBO:0038552"}


id: PBO:0085766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase of unknown cellular role; putative serine/threonine kinase; expression is induced during mild heat stress; deletion mutants are hypersensitive to copper sulphate and resistant to sorbate; interacts with an N-terminal fragment of Sst2p","termid":"PBO:0085766"}


id: PBO:0048030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fascin actin-bundling protein 1 pseudogene 1","termid":"PBO:0048030"}


id: GO:1903106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of insulin receptor signaling pathway involved in determination of adult lifespan.","definition_xrefs":["GOC:kmv","GOC:TermGenie","GO_REF:0000058","PMID:19853560"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of insulin receptor signaling pathway involved in determination of adult lifespan (obsolete GO:1903106)","synonyms":[{"name":"activation of daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"activation of insulin receptor signaling pathway involved in determination of adult lifespan","type":"narrow"},{"name":"activation of insulin receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"activation of insulin receptor signalling pathway of determination of adult lifespan","type":"narrow"},{"name":"positive regulation of daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"positive regulation of insulin receptor signaling pathway of determination of adult lifespan","type":"exact"},{"name":"positive regulation of insulin receptor signalling pathway of determination of adult lifespan","type":"exact"},{"name":"up regulation of daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"up regulation of insulin receptor signaling pathway involved in determination of adult lifespan","type":"exact"},{"name":"up regulation of insulin receptor signaling pathway of determination of adult lifespan","type":"exact"},{"name":"up regulation of insulin receptor signalling pathway of determination of adult lifespan","type":"exact"},{"name":"up-regulation of daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"up-regulation of insulin receptor signaling pathway involved in determination of adult lifespan","type":"exact"},{"name":"up-regulation of insulin receptor signaling pathway of determination of adult lifespan","type":"exact"},{"name":"up-regulation of insulin receptor signalling pathway of determination of adult lifespan","type":"exact"},{"name":"upregulation of daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"upregulation of insulin receptor signaling pathway involved in determination of adult lifespan","type":"exact"},{"name":"upregulation of insulin receptor signaling pathway of determination of adult lifespan","type":"exact"},{"name":"upregulation of insulin receptor signalling pathway of determination of adult lifespan","type":"exact"}],"termid":"GO:1903106"}


id: PBO:0066373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD52 motif containing 1","termid":"PBO:0066373"}


id: GO:0006580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine).","definition_xrefs":["ISBN:0192800981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"},{"relation_name":"is_a","term_name":"ethanolamine-containing compound metabolic process","termid":"GO:0042439"},{"relation_name":"is_a","term_name":"primary amino compound metabolic process","termid":"GO:1901160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ethanolamine metabolic process","secondary_identifiers":["GO:0006645"],"synonyms":[{"name":"ethanolamine metabolism","type":"exact"}],"termid":"GO:0006580"}


id: GO:0044301
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The axon of inferior olive neuron that projects to the cerebellar cortex, largely via the inferior cerebellar peduncle. They range in diameter from 1-3 um and are myelinated until they enter the granule cell layer. They give off collaterals to the deep cerebellar nuclei. They synapse extensively with the dendrites of Purkinje cells in the molecular layer, where each fiber branches repeatedly to climb along the Purkinje cell dendritic tree. Each Purkinje cell is innervated by only a single climbing fiber.","definition_xrefs":["NIF_Subcellular:nlx_subcell_20090203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axon","termid":"GO:0030424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"climbing fiber","synonyms":[{"name":"climbing fibre","type":"exact"}],"termid":"GO:0044301"}


id: SO:0000314
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A repeat where the same sequence is repeated in the same direction. Example: GCTGA-followed by-GCTGA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"repeat_region","termid":"SO:0000657"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"direct_repeat","secondary_identifiers":["http://en.wikipedia.org/wiki/Direct_repeat"],"synonyms":[{"name":"INSDC_feature:repeat_region","type":"broad"},{"name":"INSDC_qualifier:direct","type":"exact"},{"name":"direct repeat","type":"exact"}],"termid":"SO:0000314"}


id: PBO:0087516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of heterotrimeric Replication Protein A (RPA); RPA is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination; RPA protects against inappropriate telomere recombination, and upon telomere uncapping, prevents cell proliferation by a checkpoint-independent pathway; in concert with Sgs1p-Top2p-Rmi1p, stimulates DNA catenation/decatenation activity of Top3p; protein abundance increases in response to DNA replication s","termid":"PBO:0087516"}


id: MOD:01265
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["Unimod:270#P","PubMed:15549660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleophilic addtion to cytopiloyne","termid":"MOD:00590"},{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophilic addtion to cytopiloyne - site P","synonyms":[{"name":"Cytopiloyne","type":"related"},{"name":"nucleophilic addtion to cytopiloyne","type":"related"}],"termid":"MOD:01265"}


id: FYPO:0001504
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of trehalose measured in a cell is lower than normal during sporulation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular trehalose level","termid":"FYPO:0001447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular trehalose level during sporulation","synonyms":[{"name":"decreased cellular trehalose accumulation during sporulation","type":"related"},{"name":"reduced cellular trehalose level during sporulation","type":"exact"}],"termid":"FYPO:0001504"}


id: PBO:0029086
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_tRNA_(guanine(9)-N(1))-methyltransferase_activity","termid":"PBO:0029086"}


id: FYPO:0008027
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which the rate of acid phosphatase activation during phosphate starvation is increased.","definition_xrefs":["PMID:35012333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of catalytic activity","termid":"FYPO:0004916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased rate of acid phosphatase activation during phosphate starvation","synonyms":[{"name":"increased acid phosphatase kinetics","type":"exact"}],"termid":"FYPO:0008027"}


id: PBO:0112743
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"yeast hsp78 and hsp104 are related to human CLBP at the C-term but have different N-terminal domains possibly due to some rearrangement in the metazoan lineage","termid":"PBO:0112743"}


id: FYPO:0004908
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which L-aminoadipate-semialdehyde dehydrogenase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal L-aminoadipate-semialdehyde dehydrogenase activity","termid":"FYPO:0001674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000661","FYPO:0000654","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"abolished L-aminoadipate-semialdehyde dehydrogenase activity","synonyms":[{"name":"L-aminoadipate-semialdehyde dehydrogenase activity abolished","type":"exact"},{"name":"abolished alpha-aminoadipate reductase activity","type":"exact"}],"termid":"FYPO:0004908"}


id: GO:1902210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of bacterial-type flagellum assembly.","definition_xrefs":["GOC:jl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell projection organization","termid":"GO:0031346"},{"relation_name":"is_a","term_name":"positive regulation of organelle assembly","termid":"GO:1902117"},{"relation_name":"is_a","term_name":"regulation of bacterial-type flagellum assembly","termid":"GO:1902208"},{"relation_name":"positively_regulates","term_name":"bacterial-type flagellum assembly","termid":"GO:0044780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of bacterial-type flagellum assembly","synonyms":[{"name":"activation of bacterial flagellum assembly","type":"narrow"},{"name":"activation of bacterial-type flagellum assembly","type":"narrow"},{"name":"positive regulation of bacterial flagellum assembly","type":"exact"},{"name":"up regulation of bacterial flagellum assembly","type":"exact"},{"name":"up regulation of bacterial-type flagellum assembly","type":"exact"},{"name":"up-regulation of bacterial flagellum assembly","type":"exact"},{"name":"up-regulation of bacterial-type flagellum assembly","type":"exact"},{"name":"upregulation of bacterial flagellum assembly","type":"exact"},{"name":"upregulation of bacterial-type flagellum assembly","type":"exact"}],"termid":"GO:1902210"}


id: GO:0048208
data:
  {"annotated_genes":["SJAG_00906","SJAG_04615","SJAG_00284"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91566],"is_not":false,"summary":null,"term":"GO:0048208"},{"annotations":[104862,106254],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0003400"}]},"cv_name":"biological_process","definition":"The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat.","definition_xrefs":["GOC:jid","ISBN:0716731363","PMID:10219233","GOC:ascb_2009","GOC:tb","GOC:mah","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle coating","termid":"GO:0006901"},{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"vesicle targeting, rough ER to cis-Golgi","termid":"GO:0048207"},{"relation_name":"part_of","term_name":"COPII-coated vesicle budding","termid":"GO:0090114"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00284":null,"SJAG_00906":null,"SJAG_04615":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0061024","GO:0008150","GO:0016192","GO:0006810","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"COPII vesicle coating","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"COPII coating of ER-derived vesicle","type":"exact"},{"name":"COPII vesicle coat assembly","type":"exact"},{"name":"COPII vesicle coat formation","type":"exact"}],"termid":"GO:0048208","terms_by_termid":{"GO:0003400":null,"GO:0048208":null}}


id: PBO:0069534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 804, pseudogene","termid":"PBO:0069534"}


id: FYPO:0002300
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of germinated spores with elongated germ tubes and elongated vegetative cells. The elongated cells arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including germinated spores with elongated germ tubes and elongated cells (obsolete FYPO:0002300)","synonyms":[{"name":"inviable mixed population including germinated spores with elongated germ tubes and long cells","type":"exact"}],"termid":"FYPO:0002300"}


id: GO:0047991
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: hydroxylamine + O2 = H2O + H+ + nitrite.","definition_xrefs":["RHEA:19969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on other nitrogenous compounds as donors, oxygen as acceptor","termid":"GO:0016663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"hydroxylamine oxidase activity","secondary_identifiers":["MetaCyc:RXN-13595","EC:1.7.3.6","KEGG_REACTION:R00793"],"synonyms":[{"name":"HAO","type":"related"},{"name":"hydroxylamine oxidoreductase","type":"broad"},{"name":"hydroxylamine:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0047991"}


id: GO:0047230
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: flavonol 3-O-D-glucoside + UDP-L-rhamnose = flavonol 3-O-L-rhamnosylglucoside + UDP.","definition_xrefs":["EC:2.4.1.159","MetaCyc:2.4.1.159-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glycosyltransferase activity","termid":"GO:0008194"},{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"flavonol-3-O-glucoside L-rhamnosyltransferase activity","secondary_identifiers":["RHEA:22528"],"synonyms":[{"name":"UDP-L-rhamnose:flavonol-3-O-D-glucoside 6''-O-L-rhamnosyltransferase activity","type":"related"},{"name":"UDP-rhamnose:flavonol 3-O-glucoside rhamnosyltransferase activity","type":"related"},{"name":"uridine diphosphorhamnose-flavonol 3-O-glucoside rhamnosyltransferase activity","type":"related"}],"termid":"GO:0047230"}


id: PBO:0061344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 2","termid":"PBO:0061344"}


id: FYPO:0007098
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing vanadate ions (VO4(3-)).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0000257","FYPO:0002057","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on vanadate","synonyms":[{"name":"normal cell population growth in presence of vanadate","type":"exact"},{"name":"normal cell population growth on vanadate","type":"exact"},{"name":"normal cell population growth on vanadate ions","type":"exact"},{"name":"normal growth on orthovanadate","type":"exact"},{"name":"normal growth on vanadate(3-)","type":"exact"},{"name":"normal growth on vanadium oxoanion","type":"broad"},{"name":"normal vegetative cell population growth on vanadate","type":"exact"}],"termid":"FYPO:0007098"}


id: GO:0098892
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of the postsynaptic specialization membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:mf","GOC:autophagy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of postsynaptic membrane","termid":"GO:0098890"},{"relation_name":"part_of","term_name":"postsynaptic specialization membrane","termid":"GO:0099634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"extrinsic component of postsynaptic specialization membrane","termid":"GO:0098892"}


id: PATO:0001480
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness.","definition_xrefs":["Answers.com:Answers.com"],"direct_ancestors":[{"relation_name":"has_part","term_name":"permeable","termid":"PATO:0000982"},{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spongy","termid":"PATO:0001480"}


id: PBO:0068794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 31, pseudogene","termid":"PBO:0068794"}


id: PBO:0043893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich protein 1","termid":"PBO:0043893"}


id: PBO:0046018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EIF2AK3 divergent transcript","termid":"PBO:0046018"}


id: GO:0030086
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete PSII associated light-harvesting complex II, core complex, LHCIIa subcomplex (obsolete GO:0030086)","synonyms":[{"name":"PSII associated light-harvesting complex II, core complex, LHCIIa subcomplex","type":"exact"}],"termid":"GO:0030086"}


id: PBO:0110232
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pseudo HisTone","termid":"PBO:0110232"}


id: FYPO:0007120
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of cell cycle arrest in response to leucine starvation does not occur; arrest normally occurs in G1 phase.","definition_xrefs":["PMID:31456006","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal occurrence of normal mitotic cell cycle arrest","termid":"FYPO:0001026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"abolished cell cycle arrest in mitotic G1 phase in response to leucine starvation","synonyms":[{"name":"abolished cell cycle arrest in mitotic G1 phase during cellular response to leucine starvation","type":"exact"},{"name":"abolished cell cycle arrest in mitotic G1 phase in response to leucine depletion","type":"exact"},{"name":"abolished cell cycle arrest in mitotic G1 phase in response to leucine deprivation","type":"exact"},{"name":"abolished leucine deprivation-induced G1 arrest","type":"exact"},{"name":"abolished mitotic G1 arrest in response to leucine starvation","type":"exact"},{"name":"abolished mitotic cell cycle arrest in G1 phase in response to leucine starvation","type":"exact"},{"name":"cell cycle arrest in mitotic G1 phase in response to leucine starvation abolished","type":"exact"}],"termid":"FYPO:0007120"}


id: PBO:0036204
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H4-K5,_H4-K8,_H4-K12_and_H4-K16_acetylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0036204"}


id: GO:0038124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding of a heterodimeric TLR6:TLR2 complex, followed by transmission of the signal by the activated receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","PMID:17318230","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toll-like receptor signaling pathway","termid":"GO:0002224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"toll-like receptor TLR6:TLR2 signaling pathway","synonyms":[{"name":"TLR2:TLR6 signaling pathway","type":"exact"},{"name":"toll-like receptor TLR6:TLR2 signalling pathway","type":"exact"}],"termid":"GO:0038124"}


id: PBO:0083947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma subunit of C-terminal domain kinase I; CTDK-I phosphorylates RNA polymerase II subunit Rpo21p to affect transcription and pre-mRNA 3' end processing, and also phosphorylates ribosomal protein Rps2p to increase translational fidelity; protein abundance increases in response to DNA replication stress","termid":"PBO:0083947"}


id: PBO:0057269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR493 cluster host gene","termid":"PBO:0057269"}


id: PBO:0077231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane channel like 7","termid":"PBO:0077231"}


id: GO:0047903
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-fructose + NADP+ = 5-dehydro-D-fructose + NADPH.","definition_xrefs":["MetaCyc:FRUCTOSE-5-DEHYDROGENASE-NADP+-RXN","EC:1.1.1.124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"fructose 5-dehydrogenase (NADP+) activity","secondary_identifiers":["RHEA:14069"],"synonyms":[{"name":"5-keto-D-fructose reductase (NADP+)","type":"related"},{"name":"5-ketofructose reductase (NADP(+)) activity","type":"related"},{"name":"5-ketofructose reductase (NADP)","type":"related"},{"name":"5-ketofructose reductase (NADP+) activity","type":"related"},{"name":"D-(-)fructose:(NADP+) 5-oxidoreductase activity","type":"related"},{"name":"D-fructose:NADP+ 5-oxidoreductase activity","type":"related"},{"name":"fructose 5-(nicotinamide adenine dinucleotide phosphate) dehydrogenase activity","type":"related"}],"termid":"GO:0047903"}


id: FYPO:0008266
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphate (Pi) in the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:37949217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal cellular phosphate (Pi) level","termid":"FYPO:0008266"}


id: PBO:0067165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 218, pseudogene","termid":"PBO:0067165"}


id: PBO:0048921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A8 family member R","termid":"PBO:0048921"}


id: PBO:0071715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 13","termid":"PBO:0071715"}


id: PBO:0003511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein translocation subcomplex subunit Sec66 (predicted)","termid":"PBO:0003511"}


id: PBO:0005392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complexed with Cdc5 protein Cwf20","termid":"PBO:0005392"}


id: GO:0010385
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to double-stranded methylated DNA. Methylation of cytosine or adenine in DNA is an important mechanism for establishing stable heritable epigenetic marks.","definition_xrefs":["PMID:17242155","GOC:imk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"double-stranded DNA binding","termid":"GO:0003690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"double-stranded methylated DNA binding","termid":"GO:0010385"}


id: GO:0043150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis of DNA that contributes to the process of double-strand break repair via homologous recombination.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA synthesis involved in DNA repair","termid":"GO:0000731"},{"relation_name":"part_of","term_name":"double-strand break repair via homologous recombination","termid":"GO:0000724"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006281","GO:0006310","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"DNA synthesis involved in double-strand break repair via homologous recombination","synonyms":[{"name":"DNA synthesis during double-strand break repair via homologous recombination","type":"related"}],"termid":"GO:0043150"}


id: PBO:0035770
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H4-K16_acetylation_at_telomere_during_vegetative_growth","termid":"PBO:0035770"}


id: PBO:0003592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar sorting protein Vps68 (predicted)","termid":"PBO:0003592"}


id: GO:0047632
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: agmatine + H2O = N-carbamoylputrescine + NH3.","definition_xrefs":["EC:3.5.3.12","MetaCyc:AGMATINE-DEIMINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"agmatine deiminase activity","secondary_identifiers":["RHEA:18037"],"synonyms":[{"name":"agmatine amidinohydrolase","type":"broad"},{"name":"agmatine iminohydrolase activity","type":"related"}],"termid":"GO:0047632"}


id: FYPO:0002233
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which all cells in the population are viable but longer than normal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete viable elongated vegetative cell population (obsolete FYPO:0002233)","synonyms":[{"name":"population of viable long cells","type":"exact"},{"name":"viable long vegetative cell population","type":"exact"},{"name":"viable population of elongated vegetative cells","type":"exact"}],"termid":"FYPO:0002233"}


id: PBO:0044750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 31","termid":"PBO:0044750"}


id: GO:0014042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of neuron maturation.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neuron maturation","termid":"GO:0014041"},{"relation_name":"is_a","term_name":"positive regulation of cell maturation","termid":"GO:1903431"},{"relation_name":"positively_regulates","term_name":"neuron maturation","termid":"GO:0042551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neuron maturation","synonyms":[{"name":"activation of neuron maturation","type":"narrow"},{"name":"stimulation of neuron maturation","type":"narrow"},{"name":"up regulation of neuron maturation","type":"exact"},{"name":"up-regulation of neuron maturation","type":"exact"},{"name":"upregulation of neuron maturation","type":"exact"}],"termid":"GO:0014042"}


id: PBO:0061776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"otoconin 90","termid":"PBO:0061776"}


id: PBO:0044685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dendrin","termid":"PBO:0044685"}


id: GO:0017105
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an 11,12-saturated fatty acyl-CoA + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = an (11Z)-delta-11-fatty acyl-CoA + 2 Fe(III)-[cytochrome b5] + 2 H2O.","definition_xrefs":["PMID:15063718","PMID:15544945","RHEA:25852"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA desaturase activity","termid":"GO:0016215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"acyl-CoA delta11-(Z)-desaturase activity","secondary_identifiers":["MetaCyc:1.14.99.32-RXN","GO:0050601","EC:1.14.19.5"],"synonyms":[{"name":"Z/E11-desaturase","type":"broad"},{"name":"acyl-CoA D11-desaturase activity","type":"exact"},{"name":"acyl-CoA delta(11)-desaturase activity","type":"exact"},{"name":"acyl-CoA delta11-desaturase activity","type":"broad"},{"name":"delta(11) desaturase","type":"broad"},{"name":"delta(11)-fatty-acid desaturase","type":"broad"},{"name":"delta(11)-palmitoyl-CoA desaturase","type":"narrow"},{"name":"fatty acid delta(11)-desaturase","type":"broad"},{"name":"myristoyl-CoA 11-(Z) desaturase activity","type":"narrow"}],"termid":"GO:0017105"}


id: GO:1990548
data:
  {"annotated_genes":["SJAG_03503"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103690],"is_not":false,"summary":null,"term":"GO:1990548"}]},"cv_name":"biological_process","definition":"The process in which FAD is transported across a mitochondrial membrane, into or out of the mitochondrion.","definition_xrefs":["PMID:14555654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"FAD transmembrane transport","termid":"GO:0035350"},{"relation_name":"is_a","term_name":"mitochondrial transmembrane transport","termid":"GO:1990542"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03503":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"mitochondrial FAD transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990548","terms_by_termid":{"GO:1990548":null}}


id: GO:0019198
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoprotein phosphatase activity","termid":"GO:0004721"},{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0004721","GO:0016788","GO:0003824","GO:0016787","GO:0003674","GO:0038023","GO:0140096"],"is_obsolete":false,"name":"transmembrane receptor protein phosphatase activity","termid":"GO:0019198"}


id: GO:0014013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of gliogenesis, the formation of mature glia.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurogenesis","termid":"GO:0050767"},{"relation_name":"regulates","term_name":"gliogenesis","termid":"GO:0042063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of gliogenesis","termid":"GO:0014013"}


id: GO:0016730
data:
  {"annotated_genes":["SJAG_01063"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105819],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008860"},{"annotations":[105820],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004324"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which an iron-sulfur protein acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01063":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"oxidoreductase activity, acting on iron-sulfur proteins as donors","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.18.-.-"],"synonyms":[{"name":"oxidoreductase activity, acting on iron-sulphur proteins as donors","type":"exact"}],"termid":"GO:0016730","terms_by_termid":{"GO:0004324":null,"GO:0008860":null}}


id: PBO:0075829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal sequence receptor subunit 4","termid":"PBO:0075829"}


id: PBO:0026962
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_stress_responsive_gene_mRNA_during_cellular_response_to_phosphate_starvation","termid":"PBO:0026962"}


id: PBO:0076616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin folding cofactor A pseudogene 1","termid":"PBO:0076616"}


id: SO:0001238
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The tanscription start site that is most frequently used for transcription of a gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"TSS","termid":"SO:0000315"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major_TSS","synonyms":[{"name":"major TSS","type":"exact"},{"name":"major transcription start site","type":"exact"}],"termid":"SO:0001238"}


id: GO:0034580
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4-methyloctanoyl-CoA = 4-methyloct-2-enoyl-CoA + 2 H+ + 2 e-.","definition_xrefs":["UM-BBD_reactionID:r0924"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-methyloctanoyl-CoA dehydrogenase activity (obsolete GO:0034580)","termid":"GO:0034580"}


id: PATO:0001707
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavioural activity","termid":"PATO:0002265"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"behavioural active","termid":"PATO:0001707"}


id: PATO:0002459
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal,","definition_xrefs":["PATOC:JL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sepal-like","termid":"PATO:0002459"}


id: PBO:0079145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraspanin 7","termid":"PBO:0079145"}


id: GO:0045613
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of plasmatocyte differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hemocyte differentiation","termid":"GO:0045610"},{"relation_name":"regulates","term_name":"plasmatocyte differentiation","termid":"GO:0042387"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of plasmatocyte differentiation","termid":"GO:0045613"}


id: GO:0052113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The responsive adjustment of an organism to the osmotic conditions in or around its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete adaptation to host osmotic environment (obsolete GO:0052113)","synonyms":[{"name":"adaptation to host osmotic environment","type":"exact"},{"name":"osmotic tolerance to host environment","type":"exact"}],"termid":"GO:0052113"}


id: GO:2000876
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glyoxylate cycle.","definition_xrefs":["GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"positive regulation of carbohydrate metabolic process","termid":"GO:0045913"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of glyoxylate cycle","termid":"GO:2000874"},{"relation_name":"positively_regulates","term_name":"glyoxylate cycle","termid":"GO:0006097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"positively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of glyoxylate cycle","synonyms":[{"name":"positive regulation of glyoxylate bypass","type":"exact"}],"termid":"GO:2000876"}


id: GO:0043137
data:
  {"annotated_genes":["SJAG_01648","SJAG_02039","SJAG_04183","SJAG_03780","SJAG_01884","SJAG_06022","SJAG_00400"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93191,94189,105258],"is_not":false,"summary":null,"term":"GO:0043137"},{"annotations":[99053,100269,84341,108668],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903469"}]},"cv_name":"biological_process","definition":"Removal of the Okazaki RNA primer from the lagging strand of replicating DNA, by a combination of the actions of DNA polymerase, DNA helicase and an endonuclease.","definition_xrefs":["PMID:12424238","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA catabolic process","termid":"GO:0006401"},{"relation_name":"part_of","term_name":"DNA replication","termid":"GO:0006260"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00400":null,"SJAG_01648":null,"SJAG_01884":null,"SJAG_02039":null,"SJAG_03780":null,"SJAG_04183":null,"SJAG_06022":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006259","GO:0006260","GO:0008150"],"is_obsolete":false,"name":"DNA replication, removal of RNA primer","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Okazaki initiator RNA removal","type":"exact"}],"termid":"GO:0043137","terms_by_termid":{"GO:0043137":null,"GO:1903469":null}}


id: SO:0000351
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to decide a sequence of nucleotides, nucleotide analogs, or amino acids that has been designed by an experimenter and which may, or may not, correspond with any natural sequence.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polymer_attribute","termid":"SO:0000443"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synthetic_sequence","synonyms":[{"name":"synthetic sequence","type":"exact"}],"termid":"SO:0000351"}


id: PBO:0057817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3137","termid":"PBO:0057817"}


id: PBO:0077874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiopurine S-methyltransferase pseudogene 1","termid":"PBO:0077874"}


id: GO:0062234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of platelet activating factor, 2-O-acetyl-1-O-octadecyl-sn-glycero-3-phosphocholine.","definition_xrefs":["PMID:16371369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerol ether catabolic process","termid":"GO:0044269"},{"relation_name":"is_a","term_name":"platelet activating factor metabolic process","termid":"GO:0046469"},{"relation_name":"is_a","term_name":"glycerophospholipid catabolic process","termid":"GO:0046475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"platelet activating factor catabolic process","synonyms":[{"name":"2-O-acetyl-1-O-octadecyl-sn-glycero-3-phosphocholine catabolic process","type":"exact"},{"name":"PAF catabolic process","type":"related"}],"termid":"GO:0062234"}


id: GO:0045442
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + deacetoxycephalosporin C + O2 = CO2 + deacetylcephalosporin C + succinate.","definition_xrefs":["RHEA:16805","EC:1.14.11.26"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"deacetoxycephalosporin-C hydroxylase activity","secondary_identifiers":["KEGG_REACTION:R05229","MetaCyc:1.14.11.26-RXN"],"synonyms":[{"name":"3'-methylcephem hydroxylase activity","type":"related"},{"name":"DACS","type":"related"},{"name":"DAOC hydroxylase activity","type":"related"},{"name":"beta-lactam hydroxylase activity","type":"exact"},{"name":"deacetoxycephalosporin C hydroxylase activity","type":"related"},{"name":"deacetoxycephalosporin-C,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating) activity","type":"related"},{"name":"deacetylcephalosporin C synthase activity","type":"related"}],"termid":"GO:0045442"}


id: SO:0001018
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the molecule, interacts selectively and non-covalently with antibodies, B cells or T cells.","definition_xrefs":["SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding_site","termid":"SO:0000409"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epitope","secondary_identifiers":["http://en.wikipedia.org/wiki/Epitope"],"termid":"SO:0001018"}


id: PBO:0076904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TEX101 pseudogene 1","termid":"PBO:0076904"}


id: PBO:0017822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 L associated factor 1 Laf1","termid":"PBO:0017822"}


id: PBO:0052427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIT proto-oncogene, receptor tyrosine kinase","termid":"PBO:0052427"}


id: GO:0046213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of methyl ethyl ketone, a clear, colorless liquid with a fragrant, mint-like odor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyl ethyl ketone metabolic process","termid":"GO:0018928"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"methyl ethyl ketone catabolic process","synonyms":[{"name":"methyl ethyl ketone breakdown","type":"exact"},{"name":"methyl ethyl ketone catabolism","type":"exact"},{"name":"methyl ethyl ketone degradation","type":"exact"}],"termid":"GO:0046213"}


id: PBO:0048474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosaminyl (N-acetyl) transferase 1 pseudogene 1","termid":"PBO:0048474"}


id: GO:0010758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of macrophage chemotaxis. Macrophage chemotaxis is the movement of a macrophage in response to an external stimulus.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte chemotaxis","termid":"GO:0002688"},{"relation_name":"is_a","term_name":"regulation of macrophage migration","termid":"GO:1905521"},{"relation_name":"regulates","term_name":"macrophage chemotaxis","termid":"GO:0048246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of macrophage chemotaxis","termid":"GO:0010758"}


id: FYPO:0000720
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of fatty acid synthase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"abnormal fatty acid synthase activity","synonyms":[{"name":"abnormal FAS activity","type":"exact"}],"termid":"FYPO:0000720"}


id: PBO:0030148
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_gamma-glutamyltransferase_activity","termid":"PBO:0030148"}


id: PBO:0030065
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_phosphoglycerate_mutase_activity","termid":"PBO:0030065"}


id: GO:0033853
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arogenate + oxaloacetate = prephenate + L-aspartate.","definition_xrefs":["RHEA:20445"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"}],"interesting_parent_ids":["GO:0016740","GO:0016769","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"aspartate-prephenate aminotransferase activity","secondary_identifiers":["MetaCyc:PREPHENATE-ASP-TRANSAMINE-RXN","EC:2.6.1.78"],"synonyms":[{"name":"L-arogenate:oxaloacetate aminotransferase activity","type":"related"},{"name":"L-aspartate:prephenate aminotransferase activity","type":"related"},{"name":"PAT","type":"related"},{"name":"prephenate aspartate aminotransferase activity","type":"related"},{"name":"prephenate transaminase activity","type":"broad"}],"termid":"GO:0033853"}


id: GO:0050762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of depsipeptides, a linear or cyclic compound composed of both amino acids and hydroxy acids in peptide and ester bonds respectively.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"depsipeptide metabolic process","termid":"GO:0050761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"depsipeptide catabolic process","synonyms":[{"name":"depsipeptide breakdown","type":"exact"},{"name":"depsipeptide catabolism","type":"exact"},{"name":"depsipeptide degradation","type":"exact"}],"termid":"GO:0050762"}


id: PBO:0030280
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_cytoskeleton_morphology_during_vegetative_growth","termid":"PBO:0030280"}


id: PBO:0067222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 291, pseudogene","termid":"PBO:0067222"}


id: FYPO:0008286
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 1-diphospho-1D-myo-inositol 2,3,4,5,6-pentakisphosphate (1-IP7) is normal (i.e. indistinguishable from wild type).","direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular myo-inositol level","termid":"FYPO:0008284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal cellular 1-IP7 level","termid":"FYPO:0008286"}


id: PBO:0089126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5 snRNP-associated protein Aar2","termid":"PBO:0089126"}


id: GO:0002888
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of myeloid leukocyte mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte mediated immunity","termid":"GO:0002705"},{"relation_name":"is_a","term_name":"regulation of myeloid leukocyte mediated immunity","termid":"GO:0002886"},{"relation_name":"positively_regulates","term_name":"myeloid leukocyte mediated immunity","termid":"GO:0002444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myeloid leukocyte mediated immunity","synonyms":[{"name":"activation of myeloid leukocyte mediated immunity","type":"narrow"},{"name":"stimulation of myeloid leukocyte mediated immunity","type":"narrow"},{"name":"up regulation of myeloid leukocyte mediated immunity","type":"exact"},{"name":"up-regulation of myeloid leukocyte mediated immunity","type":"exact"},{"name":"upregulation of myeloid leukocyte mediated immunity","type":"exact"}],"termid":"GO:0002888"}


id: FYPO:0002198
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which all cells in the population are viable but have abnormal cell shape, in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete viable vegetative cell population with abnormal cell shape (obsolete FYPO:0002198)","synonyms":[{"name":"viable, abnormally shaped vegetative cell population","type":"exact"}],"termid":"FYPO:0002198"}


id: GO:0046254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, in the absence of oxygen.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toluene catabolic process","termid":"GO:0042203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"anaerobic toluene catabolic process","secondary_identifiers":["MetaCyc:PWY-81"],"synonyms":[{"name":"anaerobic toluene breakdown","type":"exact"},{"name":"anaerobic toluene catabolism","type":"exact"},{"name":"anaerobic toluene degradation","type":"exact"}],"termid":"GO:0046254"}


id: GO:0034482
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 2'-O-sulfate. Results in sulfation of glucuronic acid and iduronic acid residues.","definition_xrefs":["PMID:17227754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chondroitin sulfotransferase activity","termid":"GO:0034481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016782","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"chondroitin 2-O-sulfotransferase activity","synonyms":[{"name":"chondroitin 2-O-sulphotransferase activity","type":"exact"},{"name":"chondroitin 2-sulfotransferase activity","type":"exact"}],"termid":"GO:0034482"}


id: GO:0015600
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + polar amino acid(out) = ADP + phosphate + polar amino acid(in).","definition_xrefs":["EC:3.6.3.21","TC:3.A.1.3.4"],"gene_count":0,"genotype_count":0,"name":"obsolete glutamate/aspartate porter activity (obsolete GO:0015600)","synonyms":[{"name":"glutamate/aspartate porter activity","type":"exact"}],"termid":"GO:0015600"}


id: FYPO:0006239
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the centromere of a chromosome is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to centromere","termid":"FYPO:0005597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"increased protein localization to centromere","synonyms":[{"name":"increased protein localisation to centromere","type":"exact"},{"name":"increased protein localisation to chromosome, centromeric region","type":"exact"},{"name":"increased protein localization to chromosome, centric region","type":"exact"},{"name":"increased protein localization to chromosome, centromeric region","type":"exact"}],"termid":"FYPO:0006239"}


id: PBO:0073573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHISA5 pseudogene 1","termid":"PBO:0073573"}


id: FYPO:0005645
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of Cutin-1 (N-carbamoyl-2-(triphenyl-lambda-5-phosphanylidene)acetamide) than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002682","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"resistance to Cutin-1","synonyms":[{"name":"resistance to Cutin-1 during mitotic cell cycle","type":"related"},{"name":"resistance to Cutin-1 during vegetative growth","type":"exact"},{"name":"resistance to N-carbamoyl-2-(triphenyl-lambda-5-phosphanylidene)acetamide","type":"exact"},{"name":"resistant to Cutin-1","type":"exact"}],"termid":"FYPO:0005645"}


id: GO:0098654
data:
  {"annotated_genes":["SJAG_05273","SJAG_03867"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[111235,115021],"is_not":false,"summary":null,"term":"GO:0098654"}]},"cv_name":"cellular_component","definition":"A protein complex that includes Mis16(Yippee family) and/or Mis18 (WD repeat) subunits that is involved in the deposition of centromere specific (CENP-A containing) nucleosomes at the centromere.","definition_xrefs":["PMID:24774534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03867":null,"SJAG_05273":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"CENP-A recruiting complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"MIS18 complex","type":"narrow"}],"termid":"GO:0098654","terms_by_termid":{"GO:0098654":null}}


id: PBO:0015237
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae RAM1","termid":"PBO:0015237"}


id: PBO:0073466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sideroflexin 2","termid":"PBO:0073466"}


id: GO:0047697
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-beta-alanopine + H2O + NAD+ = beta-alanine + H+ + NADH + pyruvate.","definition_xrefs":["RHEA:21684","EC:1.5.1.26"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"beta-alanopine dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R00906","MetaCyc:BETA-ALANOPINE-DEHYDROGENASE-RXN"],"synonyms":[{"name":"N-(D-1-carboxyethyl)-beta-alanine:NAD+ oxidoreductase (beta-alanine-forming)","type":"related"},{"name":"b-alanopine dehydrogenase activity","type":"exact"}],"termid":"GO:0047697"}


id: PBO:0068105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 412","termid":"PBO:0068105"}


id: PR:O59751
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- klp6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59751"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-like protein 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1685.15c","synonyms":[{"name":"Spom972h-klp6","type":"exact"}],"termid":"PR:O59751"}


id: GO:0034576
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: N-isopropylacetanilide + OH- = N-isopropylaniline + acetate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete N-isopropylacetanilide amidohydrolase activity (obsolete GO:0034576)","termid":"GO:0034576"}


id: PBO:0041593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase 5B","termid":"PBO:0041593"}


id: PBO:0049787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 22 (gene/pseudogene)","termid":"PBO:0049787"}


id: GO:0018501
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the conversion of a di- or tetrachlorinated dienol to the corresponding catechol.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cis-chlorobenzene dihydrodiol dehydrogenase activity (obsolete GO:0018501)","termid":"GO:0018501"}


id: PBO:0080219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vasoactive intestinal peptide","termid":"PBO:0080219"}


id: GO:0097307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a farnesol stimulus.","definition_xrefs":["GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"},{"relation_name":"is_a","term_name":"response to alcohol","termid":"GO:0097305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to farnesol","termid":"GO:0097307"}


id: PBO:0077175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"talin 2","termid":"PBO:0077175"}


id: PBO:0044295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CXXC4 antisense RNA 1","termid":"PBO:0044295"}


id: FYECO:0000106
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which thiamine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ thiamine","termid":"FYECO:0000106"}


id: PBO:0078463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-His (anticodon GTG) 1-1","termid":"PBO:0078463"}


id: GO:0031365
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The alteration of the N-terminal amino acid residue in a protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal protein amino acid modification","secondary_identifiers":["GO:0018409"],"synonyms":[{"name":"peptide or protein amino-terminal blocking","type":"related"},{"name":"peptide/protein amino-terminal blocking","type":"related"}],"termid":"GO:0031365"}


id: GO:0046752
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which viral capsid precursors are transported to a specific location in the nucleus, thus accumulating the necessary components for assembly of a capsid.","definition_xrefs":["ISBN:0781718325"],"gene_count":0,"genotype_count":0,"name":"obsolete viral capsid precursor transport to host cell nucleus (obsolete GO:0046752)","synonyms":[{"name":"establishment and maintenance of viral capsid precursor localization in nucleus","type":"broad"},{"name":"localization of viral capsid precursors in nucleus","type":"broad"},{"name":"nuclear localization of viral capsid precursors","type":"broad"},{"name":"viral capsid precursor localisation in host cell nucleus","type":"broad"},{"name":"viral capsid precursor localization in host cell nucleus","type":"broad"},{"name":"viral capsid precursor localization to host cell nucleus","type":"broad"}],"termid":"GO:0046752"}


id: SO:0100011
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The cleaved_peptide_region is the region of a peptide sequence that is cleaved during maturation.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_region","termid":"SO:0000839"},{"relation_name":"part_of","term_name":"immature_peptide_region","termid":"SO:0001063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"cleaved_peptide_region","synonyms":[{"name":"cleaved peptide region","type":"exact"}],"termid":"SO:0100011"}


id: PBO:0068653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 34, pseudogene","termid":"PBO:0068653"}


id: GO:0031726
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a CCR1 chemokine receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CCR chemokine receptor binding","termid":"GO:0048020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"CCR1 chemokine receptor binding","synonyms":[{"name":"CCR1 chemokine receptor ligand","type":"narrow"},{"name":"macrophage inflammatory protein-1 alpha receptor binding","type":"exact"}],"termid":"GO:0031726"}


id: PBO:0034234
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-is_end_sequence_of","termid":"PBO:0034234"}


id: GO:0045112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of integrins, a large family of transmembrane proteins that act as receptors for cell-adhesion molecules.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule biosynthetic process","termid":"GO:0009059"},{"relation_name":"part_of","term_name":"plasma membrane organization","termid":"GO:0007009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"integrin biosynthetic process","synonyms":[{"name":"integrin anabolism","type":"exact"},{"name":"integrin biosynthesis","type":"exact"},{"name":"integrin formation","type":"exact"},{"name":"integrin synthesis","type":"exact"}],"termid":"GO:0045112"}


id: GO:0090447
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an acyl-CoA + sn-glycerol 3-phosphate = CoA + a 2-acyl-sn-glycerol 3-phosphate.","definition_xrefs":["RHEA:33559"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"glycerol-3-phosphate 2-O-acyltransferase activity","secondary_identifiers":["EC:2.3.1.198"],"termid":"GO:0090447"}


id: GO:1903912
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endoplasmic reticulum stress-induced eiF2alpha phosphorylation.","definition_xrefs":["PMID:16835242","GO_REF:0000058","GOC:bf","GOC:PARL","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein phosphorylation","termid":"GO:0001933"},{"relation_name":"is_a","term_name":"regulation of translational initiation","termid":"GO:0006446"},{"relation_name":"negatively_regulates","term_name":"eiF2alpha phosphorylation in response to endoplasmic reticulum stress","termid":"GO:0036492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation","synonyms":[{"name":"down regulation of eiF2alpha phosphorylation in response to ER stress","type":"exact"},{"name":"down regulation of eiF2alpha phosphorylation in response to endoplasmic reticulum stress","type":"exact"},{"name":"down regulation of regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress","type":"exact"},{"name":"down-regulation of eiF2alpha phosphorylation in response to ER stress","type":"exact"},{"name":"down-regulation of eiF2alpha phosphorylation in response to endoplasmic reticulum stress","type":"exact"},{"name":"down-regulation of regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress","type":"exact"},{"name":"downregulation of eiF2alpha phosphorylation in response to ER stress","type":"exact"},{"name":"downregulation of eiF2alpha phosphorylation in response to endoplasmic reticulum stress","type":"exact"},{"name":"downregulation of regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress","type":"exact"},{"name":"inhibition of eiF2alpha phosphorylation in response to ER stress","type":"narrow"},{"name":"inhibition of eiF2alpha phosphorylation in response to endoplasmic reticulum stress","type":"narrow"},{"name":"inhibition of regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress","type":"narrow"},{"name":"negative regulation of ER stress-induced eIF2 alpha phosphorylation","type":"exact"},{"name":"negative regulation of eiF2alpha phosphorylation in response to ER stress","type":"exact"},{"name":"negative regulation of eiF2alpha phosphorylation in response to endoplasmic reticulum stress","type":"exact"},{"name":"negative regulation of regulation of translation initiation by eiF2alpha phosphorylation in response to endoplasmic reticulum stress","type":"exact"}],"termid":"GO:1903912"}


id: PBO:0086002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; similar to predicted tyrosine phosphatases Oca1p and Siw14p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL056W is not an essential gene","termid":"PBO:0086002"}


id: PBO:0088921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIH complex subunit Tfb5","termid":"PBO:0088921"}


id: PBO:0017475
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-developmentally_related_to","termid":"PBO:0017475"}


id: PBO:0077897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetrapeptide repeat homeobox 2","termid":"PBO:0077897"}


id: PBO:0030763
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_response_to_zinc_ion","termid":"PBO:0030763"}


id: PBO:0046963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM83A antisense RNA 2","termid":"PBO:0046963"}


id: PBO:0090446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exopolyphosphatase, prune Ppx1","termid":"PBO:0090446"}


id: GO:0019380
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 3-phenylpropionate, the anion of phenylpropanoic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3-phenylpropionate metabolic process","termid":"GO:0018962"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"3-phenylpropionate catabolic process","secondary_identifiers":["MetaCyc:P281-PWY","MetaCyc:HCAMHPDEG-PWY"],"synonyms":[{"name":"3-phenylpropionate breakdown","type":"exact"},{"name":"3-phenylpropionate catabolism","type":"exact"},{"name":"3-phenylpropionate degradation","type":"exact"}],"termid":"GO:0019380"}


id: PBO:0042475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin 2","termid":"PBO:0042475"}


id: PBO:0061780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OCIAD1 antisense RNA 1","termid":"PBO:0061780"}


id: FYPO:0004185
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which cells show increased sensitivity to myriocin during mating. Cells stop growing (and may die) at a concentration of myriocin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah","PMID:24514900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical","termid":"FYPO:0002683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0005447","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to myriocin during mating","synonyms":[{"name":"sensitive to myriocin during conjugation with cellular fusion","type":"exact"},{"name":"sensitivity to chemicals interfering with lipids during mating","type":"broad"}],"termid":"FYPO:0004185"}


id: GO:0002133
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A stable heterodimeric complex composed of polycystin-1 and polycystin-2.","definition_xrefs":["GOC:hjd","PMID:11901144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"polycystin complex","termid":"GO:0002133"}


id: PBO:0047748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folliculin interacting protein 1","termid":"PBO:0047748"}


id: GO:0030602
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the lysis of peptide bonds with broad specificity similar to that of pepsin A. Clots milk by cleavage of a single Ser-Phe-l-Met-Ala bond in kappa-casein.","definition_xrefs":["EC:3.4.23.4"],"gene_count":0,"genotype_count":0,"name":"obsolete chymosin activity (obsolete GO:0030602)","synonyms":[{"name":"chymosin activity","type":"exact"},{"name":"rennin","type":"related"},{"name":"rennin (but this should be avoided since it leads to confusion with renin)","type":"related"}],"termid":"GO:0030602"}


id: GO:0002533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of lysosomal enzymes by a cell as part of an inflammatory response.","definition_xrefs":["PMID:11836514","GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretion of lysosomal enzymes","termid":"GO:0033299"},{"relation_name":"part_of","term_name":"lysosomal enzyme production involved in inflammatory response","termid":"GO:0002393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"lysosomal enzyme secretion involved in inflammatory response","synonyms":[{"name":"lysosomal enzyme secretion involved in acute inflammatory response","type":"related"},{"name":"secretion of lysosomal enzymes involved in acute inflammatory response","type":"broad"},{"name":"secretion of lysosomal enzymes involved in inflammatory response","type":"exact"}],"termid":"GO:0002533"}


id: PBO:0042863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 95","termid":"PBO:0042863"}


id: FYPO:0000559
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the rate, or speed, of re-entry into the mitotic cell cycle after pheromone arrest is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal re-entry into mitotic cell cycle after pheromone arrest","termid":"FYPO:0000555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000298"],"is_obsolete":false,"name":"increased rate of re-entry into mitotic cell cycle after pheromone arrest","synonyms":[{"name":"increased rate of recovery from pheromone-induced cell cycle arrest","type":"exact"},{"name":"recovery from pheromone-induced cell cycle arrest: increased rate","type":"related"}],"termid":"FYPO:0000559"}


id: GO:0018664
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: benzoate + H+ + NADPH + O2 = 4-hydroxybenzoate + H2O + NADP+.","definition_xrefs":["RHEA:18033","EC:1.14.14.92"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"benzoate 4-monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R01295","UM-BBD_reactionID:r0623","MetaCyc:BENZOATE-4-MONOOXYGENASE-RXN"],"synonyms":[{"name":"4-hydroxybenzoic hydroxylase activity","type":"exact"},{"name":"benzoate 4-hydroxylase activity","type":"related"},{"name":"benzoate,NADPH:oxygen oxidoreductase (4-hydroxylating)","type":"related"},{"name":"benzoate-p-hydroxylase activity","type":"related"},{"name":"benzoate-para-hydroxylase activity","type":"related"},{"name":"benzoic 4-hydroxylase activity","type":"related"},{"name":"benzoic acid 4-hydroxylase activity","type":"related"},{"name":"p-hydroxybenzoate hydroxylase activity","type":"related"}],"termid":"GO:0018664"}


id: GO:0033849
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 dimethylallyl diphosphate = (R,R)-chrysanthemyl diphosphate + diphosphate.","definition_xrefs":["EC:2.5.1.67","RHEA:14009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016765","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"chrysanthemyl diphosphate synthase activity","secondary_identifiers":["KEGG_REACTION:R08948","MetaCyc:2.5.1.67-RXN"],"synonyms":[{"name":"CPPase activity","type":"related"},{"name":"dimethylallyl-diphosphate:dimethylallyl-diphosphate dimethylallyltransferase (chrysanthemyl-diphosphate-forming) activity","type":"related"}],"termid":"GO:0033849"}


id: PBO:0050964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon lambda receptor 1","termid":"PBO:0050964"}


id: GO:1905273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of proton-transporting ATP synthase activity, rotational mechanism.","definition_xrefs":["GOC:als","GO_REF:0000059","GOC:TermGenie","PMID:21106936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ligase activity","termid":"GO:0051351"},{"relation_name":"is_a","term_name":"regulation of proton-transporting ATP synthase activity, rotational mechanism","termid":"GO:1905271"},{"relation_name":"is_a","term_name":"positive regulation of cation channel activity","termid":"GO:2001259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of proton-transporting ATP synthase activity, rotational mechanism","synonyms":[{"name":"activation of H+-transporting ATP synthase activity","type":"narrow"},{"name":"activation of hydrogen ion translocating F-type ATPase activity","type":"narrow"},{"name":"activation of hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"narrow"},{"name":"activation of hydrogen ion transporting two-sector ATPase activity","type":"narrow"},{"name":"activation of proton-transporting ATP synthase activity, rotational mechanism","type":"narrow"},{"name":"positive regulation of H+-transporting ATP synthase activity","type":"exact"},{"name":"positive regulation of hydrogen ion translocating F-type ATPase activity","type":"exact"},{"name":"positive regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"positive regulation of hydrogen ion transporting two-sector ATPase activity","type":"exact"},{"name":"up regulation of H+-transporting ATP synthase activity","type":"exact"},{"name":"up regulation of hydrogen ion translocating F-type ATPase activity","type":"exact"},{"name":"up regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"up regulation of hydrogen ion transporting two-sector ATPase activity","type":"exact"},{"name":"up regulation of proton-transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"up-regulation of H+-transporting ATP synthase activity","type":"exact"},{"name":"up-regulation of hydrogen ion translocating F-type ATPase activity","type":"exact"},{"name":"up-regulation of hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"up-regulation of hydrogen ion transporting two-sector ATPase activity","type":"exact"},{"name":"up-regulation of proton-transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"upregulation of H+-transporting ATP synthase activity","type":"exact"},{"name":"upregulation of hydrogen ion translocating F-type ATPase activity","type":"exact"},{"name":"upregulation of hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"upregulation of hydrogen ion transporting two-sector ATPase activity","type":"exact"},{"name":"upregulation of proton-transporting ATP synthase activity, rotational mechanism","type":"exact"}],"termid":"GO:1905273"}


id: GO:0033204
data:
  {"annotated_genes":["SJAG_01623","SJAG_03796"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100670,114769],"is_not":false,"summary":null,"term":"GO:0033204"}]},"cv_name":"molecular_function","definition":"Binding to RNA subunit of ribonuclease P.","definition_xrefs":["PMID:11455963","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01623":null,"SJAG_03796":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003723","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"ribonuclease P RNA binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"RNase P RNA binding","type":"exact"}],"termid":"GO:0033204","terms_by_termid":{"GO:0033204":null}}


id: GO:0002075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the somitomeric trunk muscle over time, from its formation to the mature structure. The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus.","definition_xrefs":["PMID:16638982","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal muscle organ development","termid":"GO:0060538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"somitomeric trunk muscle development","termid":"GO:0002075"}


id: GO:0070819
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protoporphyrinogen IX + menaquinone = protoporphyrin IX + reduced menaquinone.","definition_xrefs":["GOC:mah","PMID:19583219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor","termid":"GO:0016635"},{"relation_name":"is_a","term_name":"protoporphyrinogen oxidase activity","termid":"GO:0070818"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"menaquinone-dependent protoporphyrinogen oxidase activity","secondary_identifiers":["EC:1.3.3.4"],"synonyms":[{"name":"protoporphyrinogen-IX:menaquinone oxidoreductase activity","type":"exact"}],"termid":"GO:0070819"}


id: PR:O60152
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An E3 ubiquitin-protein ligase UBR2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase ubr1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19C7.02","secondary_identifiers":["UniProtKB:O60152"],"synonyms":[{"name":"N-end-recognizing protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"N-recognin-1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-UBR2","type":"exact"}],"termid":"PR:O60152"}


id: PBO:0002240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJ domain protein Caj1/Djp1 type (predicted)","termid":"PBO:0002240"}


id: PBO:0073091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex subunit C","termid":"PBO:0073091"}


id: PBO:0000447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-PHD finger","termid":"PBO:0000447"}


id: PBO:0068516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 108, pseudogene","termid":"PBO:0068516"}


id: GO:0006329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete satellite DNA binding (obsolete GO:0006329)","synonyms":[{"name":"satellite DNA binding","type":"exact"}],"termid":"GO:0006329"}


id: PBO:0051395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda joining 3","termid":"PBO:0051395"}


id: GO:0052607
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 7-hydroxychlorophyllide a + NADPH + O2 + H+ = chlorophyllide b + NADP+ + 2 H2O.","definition_xrefs":["MetaCyc:RXN-7677"],"gene_count":0,"genotype_count":0,"name":"obsolete 7-hydroxy-chlorophyllide a oxygenase activity (obsolete GO:0052607)","secondary_identifiers":["KEGG_REACTION:R08204"],"synonyms":[{"name":"chlorophyll b synthetase activity","type":"exact"}],"termid":"GO:0052607"}


id: PBO:0030617
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_Calcofluor_White","termid":"PBO:0030617"}


id: PBO:0111350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophismin-like histone chaperone/CENP-A amino terminus domain (NTD) isomerase Ani1/Fkbp39","termid":"PBO:0111350"}


id: GO:0042126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving nitrates, inorganic or organic salts and esters of nitric acid.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxoacid metabolic process","termid":"GO:0043436"},{"relation_name":"is_a","term_name":"reactive nitrogen species metabolic process","termid":"GO:2001057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"nitrate metabolic process","synonyms":[{"name":"nitrate metabolism","type":"exact"}],"termid":"GO:0042126"}


id: MOD:00402
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by formation of an adduct of a cysteine residue with the Gygi isotope-coded affinity tag d8 reagent.","definition_xrefs":["PubMed:10504701","Unimod:9#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(2)H deuterium tagged reagent","termid":"MOD:01431"},{"relation_name":"is_a","term_name":"isotope tagged sufhydryl reagent modified cysteine","termid":"MOD:01820"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gygi ICAT(TM) d8 modified cysteine","synonyms":[{"name":"Gygi ICAT(TM) d8","type":"related"},{"name":"ICAT-G:2H(8)","type":"related"}],"termid":"MOD:00402"}


id: GO:0009457
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A group of small electron carriers, characteristic of anaerobic bacteria, photosynthetic bacteria, cyanobacteria and eukaryotic algae. Contain flavin mononucleotide.","definition_xrefs":["GOC:kd"],"gene_count":0,"genotype_count":0,"name":"obsolete flavodoxin (obsolete GO:0009457)","synonyms":[{"name":"flavodoxin","type":"exact"}],"termid":"GO:0009457"}


id: PBO:0061253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitric oxide synthase 3","termid":"PBO:0061253"}


id: FYPO:0004490
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more transport RNAs measured in a cell is higher than normal (i.e. higher than observed in wild-type cells). Transport RNAs are transcribed from genes whose products are involved in one or more transport processes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased level of transport gene mRNA during vegetative growth","synonyms":[{"name":"increased level of transport gene RNA during vegetative growth","type":"exact"},{"name":"increased level of transport gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of transport gene transcripts during vegetative growth","type":"exact"},{"name":"increased transport gene mRNA accumulation during vegetative growth","type":"related"}],"termid":"FYPO:0004490"}


id: PBO:0057890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3194","termid":"PBO:0057890"}


id: PBO:0110040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAA40 pseudogene 1","termid":"PBO:0110040"}


id: GO:0048873
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any biological process involved in the maintenance of the steady-state number of cells within a population of cells in a tissue.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue homeostasis","termid":"GO:0001894"},{"relation_name":"is_a","term_name":"homeostasis of number of cells","termid":"GO:0048872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"homeostasis of number of cells within a tissue","termid":"GO:0048873"}


id: PBO:0091664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane mannan endo-1,6-alpha-mannosidase Dfg502","termid":"PBO:0091664"}


id: PBO:0056013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSM8 homolog, U6 small nuclear RNA associated","termid":"PBO:0056013"}


id: GO:0021728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the inferior reticular formation over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph","GOC:curators","GOC:jid","GO_REF:0000021","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural nucleus development","termid":"GO:0048857"},{"relation_name":"part_of","term_name":"medullary reticular formation development","termid":"GO:0021723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inferior reticular formation development","termid":"GO:0021728"}


id: PBO:0008485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PP2A-type phosphatase inhibitor Sds23/Moc1","termid":"PBO:0008485"}


id: GO:0085012
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a Tat complex. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete interaction with host via protein secreted by Tat complex (obsolete GO:0085012)","synonyms":[{"name":"interaction with host via protein secreted by Tat secretion system","type":"exact"}],"termid":"GO:0085012"}


id: PBO:0083735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential component of CPF (cleavage and polyadenylation factor); involved in 3' end formation of snoRNA and mRNA; interacts directly with Pta1p; relocalizes to the cytosol in response to hypoxia; similar to mammalian Cleavage-Stimulation Factor CstF-64","termid":"PBO:0083735"}


id: CHEBI:64090
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tert-butyl hydroperoxide","termid":"CHEBI:64090"}


id: PBO:0053365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 276","termid":"PBO:0053365"}


id: GO:0015182
data:
  {"annotated_genes":["SJAG_04725","SJAG_02029"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98905,106159],"is_not":false,"summary":null,"term":"GO:0015182"}]},"cv_name":"molecular_function","definition":"Enables the transfer of L-asparagine from one side of a membrane to the other. L-asparagine is the L-enantiomer of alpha-aminosuccinamic acid.","definition_xrefs":["ISBN:0198506732","GOC:go_curators","ISBN:0815340729","GOC:jsg","GOC:mtg_transport","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"neutral L-amino acid transmembrane transporter activity","termid":"GO:0015175"},{"relation_name":"is_a","term_name":"L-amino acid transmembrane transporter activity","termid":"GO:0015179"},{"relation_name":"is_a","term_name":"amide transmembrane transporter activity","termid":"GO:0042887"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02029":null,"SJAG_04725":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"L-asparagine transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"L-asparagine transporter activity","type":"broad"},{"name":"asparagine/glutamine permease activity","type":"narrow"}],"termid":"GO:0015182","terms_by_termid":{"GO:0015182":null}}


id: GO:0015934
data:
  {"annotated_genes":["SJAG_05216","SJAG_01202","SJAG_01853","SJAG_02535","SJAG_02840","SJAG_00497","SJAG_00799","SJAG_01413","SJAG_02081","SJAG_03636","SJAG_00384","SJAG_04478","SJAG_01365","SJAG_00940","SJAG_04020","SJAG_04019","SJAG_03922","SJAG_03297","SJAG_01829","SJAG_01364","SJAG_04493","SJAG_03133","SJAG_02871","SJAG_00155","SJAG_00086","SJAG_06253","SJAG_02890","SJAG_03284","SJAG_00315","SJAG_00034","SJAG_04534","SJAG_07013","SJAG_00537","SJAG_00220","SJAG_04176","SJAG_04160","SJAG_01473","SJAG_02207","SJAG_00765","SJAG_03192","SJAG_05218","SJAG_03423","SJAG_01721","SJAG_01565","SJAG_00166","SJAG_04897","SJAG_03159","SJAG_01727","SJAG_06612","SJAG_05248","SJAG_01608","SJAG_01568","SJAG_02312","SJAG_02891","SJAG_04216","SJAG_03383","SJAG_00465","SJAG_02597","SJAG_01676","SJAG_02802","SJAG_01322","SJAG_03425","SJAG_05244","SJAG_00921","SJAG_01194","SJAG_02243","SJAG_07014","SJAG_02546","SJAG_03364","SJAG_04414","SJAG_01478","SJAG_04304","SJAG_01463","SJAG_00748","SJAG_04207","SJAG_03043","SJAG_03971","SJAG_02121","SJAG_02611","SJAG_00629","SJAG_01719","SJAG_02280","SJAG_03127","SJAG_06110","SJAG_04689","SJAG_05270","SJAG_01411","SJAG_03197","SJAG_01128","SJAG_03335","SJAG_02283","SJAG_03176","SJAG_05221","SJAG_00726","SJAG_07009","SJAG_04244","SJAG_04626","SJAG_03326","SJAG_04066","SJAG_03919","SJAG_01045","SJAG_01588","SJAG_04847","SJAG_01551","SJAG_02755","SJAG_01630","SJAG_02836","SJAG_03040","SJAG_01087","SJAG_01580","SJAG_02762","SJAG_04889","SJAG_04893","SJAG_02510","SJAG_00844","SJAG_00749","SJAG_02531","SJAG_02071","SJAG_03649","SJAG_03459","SJAG_01591","SJAG_03402","SJAG_03666","SJAG_04490","SJAG_03122","SJAG_05573","SJAG_01303"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[115079,115137,104320,113824,107245,93238,113058,109666,110178,96990,87072,111334,83710,108344,108166,106872,103211,101838,100215,108472,114443,89612,97982,109665,85635,84131,111335,105664,111880,90947,90920,114966,87047,98578,93529,97402,112742,97754,114442,113059,112947,113950,95245,108264,86264,89649,115080,97445,93508,104747,84132,93544,106421,108533,98561,92251,95954,87071,104340,107176,110069,94282,110631,113833,111514,110177,86265,97291,95953,84216,114965,92250,86128,110632,95246,107772,97444,101541,104450,107177,84133,90946,107773,93528,85403,96508,110676,112743,113604,113834,89611,92893,107246,97981,100216,104748,104308,93143,103210,108265,104449,88499,106871,100908,103999,104341,101839,95160,113774,93507,96870,89650,94283,88500,87046,105964,97755,106420,83709,108471,86129,105965,87045,90921,104115,105665,109650,111513,101542,96869,95159,93229,93237,108534,96509,113603,97401,114134,101669,112946,104319,108345,115138,110677,110070,93545,84111,98560,98577,113775,108165,92892,108088],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0022625"},{"annotations":[85506,95175,92962,100478,99545,102869,100973,101820,108869,110866,114097,98713,92319,113289,84387,99436,85056,94727,94053,104309,92658,107240,109603,109045,104356,108371,110746,97177,99799,105973,110468,111531,94032,106913,111578,108609,112323,112435,113175,101967,87487,92280,104209,111398,98018],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005762"}]},"cv_name":"cellular_component","definition":"The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosomal subunit","termid":"GO:0044391"}],"gene_count":127,"genes_by_uniquename":{"SJAG_00034":null,"SJAG_00086":null,"SJAG_00155":null,"SJAG_00166":null,"SJAG_00220":null,"SJAG_00315":null,"SJAG_00384":null,"SJAG_00465":null,"SJAG_00497":null,"SJAG_00537":null,"SJAG_00629":null,"SJAG_00726":null,"SJAG_00748":null,"SJAG_00749":null,"SJAG_00765":null,"SJAG_00799":null,"SJAG_00844":null,"SJAG_00921":null,"SJAG_00940":null,"SJAG_01045":null,"SJAG_01087":null,"SJAG_01128":null,"SJAG_01194":null,"SJAG_01202":null,"SJAG_01303":null,"SJAG_01322":null,"SJAG_01364":null,"SJAG_01365":null,"SJAG_01411":null,"SJAG_01413":null,"SJAG_01463":null,"SJAG_01473":null,"SJAG_01478":null,"SJAG_01551":null,"SJAG_01565":null,"SJAG_01568":null,"SJAG_01580":null,"SJAG_01588":null,"SJAG_01591":null,"SJAG_01608":null,"SJAG_01630":null,"SJAG_01676":null,"SJAG_01719":null,"SJAG_01721":null,"SJAG_01727":null,"SJAG_01829":null,"SJAG_01853":null,"SJAG_02071":null,"SJAG_02081":null,"SJAG_02121":null,"SJAG_02207":null,"SJAG_02243":null,"SJAG_02280":null,"SJAG_02283":null,"SJAG_02312":null,"SJAG_02510":null,"SJAG_02531":null,"SJAG_02535":null,"SJAG_02546":null,"SJAG_02597":null,"SJAG_02611":null,"SJAG_02755":null,"SJAG_02762":null,"SJAG_02802":null,"SJAG_02836":null,"SJAG_02840":null,"SJAG_02871":null,"SJAG_02890":null,"SJAG_02891":null,"SJAG_03040":null,"SJAG_03043":null,"SJAG_03122":null,"SJAG_03127":null,"SJAG_03133":null,"SJAG_03159":null,"SJAG_03176":null,"SJAG_03192":null,"SJAG_03197":null,"SJAG_03284":null,"SJAG_03297":null,"SJAG_03326":null,"SJAG_03335":null,"SJAG_03364":null,"SJAG_03383":null,"SJAG_03402":null,"SJAG_03423":null,"SJAG_03425":null,"SJAG_03459":null,"SJAG_03636":null,"SJAG_03649":null,"SJAG_03666":null,"SJAG_03919":null,"SJAG_03922":null,"SJAG_03971":null,"SJAG_04019":null,"SJAG_04020":null,"SJAG_04066":null,"SJAG_04160":null,"SJAG_04176":null,"SJAG_04207":null,"SJAG_04216":null,"SJAG_04244":null,"SJAG_04304":null,"SJAG_04414":null,"SJAG_04478":null,"SJAG_04490":null,"SJAG_04493":null,"SJAG_04534":null,"SJAG_04626":null,"SJAG_04689":null,"SJAG_04847":null,"SJAG_04889":null,"SJAG_04893":null,"SJAG_04897":null,"SJAG_05216":null,"SJAG_05218":null,"SJAG_05221":null,"SJAG_05244":null,"SJAG_05248":null,"SJAG_05270":null,"SJAG_05573":null,"SJAG_06110":null,"SJAG_06253":null,"SJAG_06612":null,"SJAG_07009":null,"SJAG_07013":null,"SJAG_07014":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"large ribosomal subunit","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ribosomal large subunit","type":"exact"}],"termid":"GO:0015934","terms_by_termid":{"GO:0005762":null,"GO:0022625":null}}


id: PBO:0053754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 994","termid":"PBO:0053754"}


id: PATO:0001089
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001089 elasticity value (obsolete PATO:0001089)","termid":"PATO:0001089"}


id: GO:0099107
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Modulation of the activity of an ion channel via direct interaction with it as part of G protein-coupled receptor signaling.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ion channel regulator activity","termid":"GO:0099106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0003674"],"is_obsolete":false,"name":"ion channel regulator activity involved in G protein-coupled receptor signaling pathway","synonyms":[{"name":"ion channel regulator activity involved in G-protein coupled receptor signaling pathway","type":"exact"}],"termid":"GO:0099107"}


id: GO:0046450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dethiobiotin, a derivative of biotin formed by replacing the sulfur atom by two hydrogen atoms.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"dethiobiotin metabolic process","synonyms":[{"name":"desthiobiotin metabolic process","type":"exact"},{"name":"desthiobiotin metabolism","type":"exact"},{"name":"dethiobiotin metabolism","type":"exact"}],"termid":"GO:0046450"}


id: GO:0072757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a camptothecin stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to alkaloid","termid":"GO:0071312"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"response to camptothecin","termid":"GO:1901563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to camptothecin","synonyms":[{"name":"cellular response to CPT","type":"exact"}],"termid":"GO:0072757"}


id: PBO:0027560
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_during_cellular_response_to_osmotic_stress","termid":"PBO:0027560"}


id: PR:O13665
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- far11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"factor arrest protein 11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC27B12.04c","synonyms":[{"name":"Spom972h-far11","type":"exact"}],"termid":"PR:O13665"}


id: PBO:0042640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 15 pseudogene","termid":"PBO:0042640"}


id: SO:0000700
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A comment about the sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"experimental_feature","termid":"SO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"remark","termid":"SO:0000700"}


id: GO:0120122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving prolactin, a protein hormone of the anterior pituitary gland that promotes lactation in response to the suckling stimulus of hungry young mammals.","definition_xrefs":["PMID:11015620"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone metabolic process","termid":"GO:0042445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prolactin metabolic process","synonyms":[{"name":"prolactin metabolism","type":"exact"}],"termid":"GO:0120122"}


id: PBO:0068344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 115","termid":"PBO:0068344"}


id: PBO:0091381
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.6 umol/min/mg","termid":"PBO:0091381"}


id: PBO:0047663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase family member 15","termid":"PBO:0047663"}


id: PBO:0030140
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_GTP_binding","termid":"PBO:0030140"}


id: GO:0033075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of isoquinoline alkaloids, alkaloid compounds that contain bicyclic N-containing aromatic rings and are derived from a 3,4-dihydroxytyramine (dopamine) precursor that undergoes a Schiff base addition with aldehydes of different origin.","definition_xrefs":["GOC:mah","PMID:26503307"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkaloid biosynthetic process","termid":"GO:0009821"},{"relation_name":"is_a","term_name":"isoquinoline alkaloid metabolic process","termid":"GO:0033076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"isoquinoline alkaloid biosynthetic process","synonyms":[{"name":"ipecac alkaloid biosynthesis","type":"related"},{"name":"isoquinoline alkaloid anabolism","type":"exact"},{"name":"isoquinoline alkaloid biosynthesis","type":"exact"},{"name":"isoquinoline alkaloid formation","type":"exact"},{"name":"isoquinoline alkaloid synthesis","type":"exact"}],"termid":"GO:0033075"}


id: GO:0035705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a T-helper 17 cell in response to an external stimulus.","definition_xrefs":["GOC:BHF","CL:0000899"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell chemotaxis","termid":"GO:0010818"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T-helper 17 cell chemotaxis","synonyms":[{"name":"Th17 cell chemotaxis","type":"exact"}],"termid":"GO:0035705"}


id: PBO:0040085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase F","termid":"PBO:0040085"}


id: PR:P41888
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tnr3 gene.","definition_xrefs":["UniProtKB:P41888","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine pyrophosphokinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F12.05c","synonyms":[{"name":"Spom972h-tnr3","type":"exact"},{"name":"TPK (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"thiamine kinase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P41888"}


id: PATO:0000503
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A phase which occurs during the light cycle.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phase","termid":"PATO:0000083"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"light phase","termid":"PATO:0000503"}


id: PBO:0045887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 epsilon 1 pseudogene 1","termid":"PBO:0045887"}


id: GO:0018772
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4,6-trioxoheptanoate + H2O = acetylpyruvate + acetate.","definition_xrefs":["MetaCyc:R306-RXN","UM-BBD_reactionID:r0094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"trioxoheptanoate hydrolase activity","termid":"GO:0018772"}


id: PBO:0089595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-H2B chaperone, FACT complex subunit Spt16","termid":"PBO:0089595"}


id: GO:0102116
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dodecanoate + NADPH + O2 + H+ = 11-hydroxylaurate + NADP + H2O.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete laurate hydroxylase activity (obsolete GO:0102116)","termid":"GO:0102116"}


id: PBO:0039503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 26 pseudogene 1","termid":"PBO:0039503"}


id: GO:0043419
data:
  {"annotated_genes":["SJAG_02766","SJAG_04679"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87471,115170],"is_not":false,"summary":null,"term":"GO:0043419"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of urea, the water soluble compound O=C-(NH2)2.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urea metabolic process","termid":"GO:0019627"},{"relation_name":"is_a","term_name":"amide catabolic process","termid":"GO:0043605"},{"relation_name":"is_a","term_name":"small molecule catabolic process","termid":"GO:0044282"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02766":null,"SJAG_04679":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0071941"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0071941","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"urea catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"urea breakdown","type":"exact"},{"name":"urea catabolism","type":"exact"},{"name":"urea decomposition","type":"exact"},{"name":"urea degradation","type":"exact"}],"termid":"GO:0043419","terms_by_termid":{"GO:0043419":null}}


id: PBO:0016122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silenced mating-type m-specific polypeptide Mi","termid":"PBO:0016122"}


id: PBO:0079141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraspanin 4","termid":"PBO:0079141"}


id: PBO:0076505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 5","termid":"PBO:0076505"}


id: GO:0016091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of prenols, isoprenoids of general formula (H-CH2-C(CH3)=CH-CH2-)n-OH, any primary monohydroxy alcohol whose carbon skeleton consists of two or more isoprenoid residues linked head to tail.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid biosynthetic process","termid":"GO:0008299"},{"relation_name":"is_a","term_name":"prenol metabolic process","termid":"GO:0016090"},{"relation_name":"is_a","term_name":"alcohol biosynthetic process","termid":"GO:0046165"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"prenol biosynthetic process","synonyms":[{"name":"prenol anabolism","type":"exact"},{"name":"prenol biosynthesis","type":"exact"},{"name":"prenol formation","type":"exact"},{"name":"prenol synthesis","type":"exact"}],"termid":"GO:0016091"}


id: PBO:0091383
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae ILV3","termid":"PBO:0091383"}


id: GO:0070305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cGMP (cyclic GMP, guanosine 3',5'-cyclophosphate) stimulus.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to purine-containing compound","termid":"GO:0014074"},{"relation_name":"is_a","term_name":"response to organophosphorus","termid":"GO:0046683"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cGMP","synonyms":[{"name":"response to 3',5' cGMP","type":"exact"},{"name":"response to 3',5'-cGMP","type":"exact"},{"name":"response to cyclic GMP","type":"exact"},{"name":"response to guanosine 3',5'-cyclophosphate","type":"exact"}],"termid":"GO:0070305"}


id: PBO:0063396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDCD6 pseudogene 1","termid":"PBO:0063396"}


id: GO:2000842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dehydroepiandrosterone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of lipid transport","termid":"GO:0032370"},{"relation_name":"is_a","term_name":"positive regulation of hormone secretion","termid":"GO:0046887"},{"relation_name":"is_a","term_name":"regulation of dehydroepiandrosterone secretion","termid":"GO:2000840"},{"relation_name":"positively_regulates","term_name":"dehydroepiandrosterone secretion","termid":"GO:0035942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of dehydroepiandrosterone secretion","synonyms":[{"name":"positive regulation of 3beta-hydroxyandrost-5-en-17-one secretion","type":"exact"},{"name":"positive regulation of DHEA secretion","type":"exact"},{"name":"positive regulation of dehydroisoandrosterone secretion","type":"exact"}],"termid":"GO:2000842"}


id: PBO:0028132
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_microtubule_cytoskeleton_morphology_during_vegetative_growth","termid":"PBO:0028132"}


id: PBO:0077609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymosin beta 4 X-linked","termid":"PBO:0077609"}


id: SO:0002349
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A heritable locus on a chromosome that is prone to DNA breakage.","direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome_breakpoint","termid":"SO:0001021"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile_site","termid":"SO:0002349"}


id: PBO:0027640
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-fragmented_spindle_during_meiosis_II","termid":"PBO:0027640"}


id: PBO:0065767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PZP alpha-2-macroglobulin like","termid":"PBO:0065767"}


id: PBO:0114137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulphite transmembrane transporter Ssu4","termid":"PBO:0114137"}


id: PBO:0065923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB, member of RAS oncogene family like 2B","termid":"PBO:0065923"}


id: PBO:0083090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA binding transcriptional activator; mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain","termid":"PBO:0083090"}


id: GO:0044198
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a TRAF-type zinc finger domain of a protein.","definition_xrefs":["InterPro:IPR001293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"zf-TRAF domain binding","synonyms":[{"name":"TRAF-type zinc finger domain binding","type":"exact"},{"name":"zinc finger TRAF-type domain binding","type":"exact"},{"name":"zinc-finger-TRAF domain binding","type":"exact"}],"termid":"GO:0044198"}


id: PBO:0060165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-RNR2 like 13 (pseudogene)","termid":"PBO:0060165"}


id: GO:1990509
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Protein complex involved in the disassembly of Mago-Y14 from the spliced mRNA during first round of translation, independently of the translational machinery. Conserved from fission yeast to humans.","definition_xrefs":["GOC:bhm","PMID:14968132"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"PYM-mago-Y14 complex","synonyms":[{"name":"PYM-mago-RNA-binding protein 8A complex","type":"exact"},{"name":"wibg-mago-tsu complex","type":"exact"}],"termid":"GO:1990509"}


id: PBO:0056448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule affinity regulating kinase 3","termid":"PBO:0056448"}


id: PBO:0045674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein cytoplasmic 1 light intermediate chain 2","termid":"PBO:0045674"}


id: PBO:0058064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4283-2","termid":"PBO:0058064"}


id: GO:0050858
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B- or T cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of antigen receptor-mediated signaling pathway","termid":"GO:0050854"},{"relation_name":"negatively_regulates","term_name":"antigen receptor-mediated signaling pathway","termid":"GO:0050851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of antigen receptor-mediated signaling pathway","synonyms":[{"name":"down regulation of antigen receptor-mediated signaling pathway","type":"exact"},{"name":"down-regulation of antigen receptor-mediated signaling pathway","type":"exact"},{"name":"downregulation of antigen receptor-mediated signaling pathway","type":"exact"},{"name":"inhibition of antigen receptor-mediated signaling pathway","type":"narrow"},{"name":"negative regulation of antigen receptor mediated signalling pathway","type":"exact"}],"termid":"GO:0050858"}


id: PBO:0055149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2568","termid":"PBO:0055149"}


id: GO:1901703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any protein localization that is involved in auxin polar transport.","definition_xrefs":["GOC:TermGenie","PMID:23163883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"},{"relation_name":"part_of","term_name":"auxin polar transport","termid":"GO:0009926"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"protein localization involved in auxin polar transport","synonyms":[{"name":"establishment and maintenance of protein localization involved in auxin polar transport","type":"exact"},{"name":"protein localisation involved in auxin polar transport","type":"exact"}],"termid":"GO:1901703"}


id: GO:0045904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of translational termination.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translational termination","termid":"GO:0006449"},{"relation_name":"is_a","term_name":"negative regulation of translation","termid":"GO:0017148"},{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex disassembly","termid":"GO:0043242"},{"relation_name":"negatively_regulates","term_name":"translational termination","termid":"GO:0006415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of translational termination","synonyms":[{"name":"down regulation of translational termination","type":"exact"},{"name":"down-regulation of translational termination","type":"exact"},{"name":"downregulation of translational termination","type":"exact"},{"name":"inhibition of translational termination","type":"narrow"}],"termid":"GO:0045904"}


id: PBO:0062045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily T member 32 pseudogene","termid":"PBO:0062045"}


id: PBO:0084421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Major isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; acetylated by the NatB complex and acetylated form binds actin most efficiently; TPM1 has a paralog, TPM2, that arose from the whole genome duplication","termid":"PBO:0084421"}


id: PBO:0063360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate cancer expressed EZH2 associated transcript","termid":"PBO:0063360"}


id: PBO:0089060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger, MIZ-type","termid":"PBO:0089060"}


id: GO:0060526
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the prostate glandular acini are generated and organized. The glandular acini are the saclike structures of the gland.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostate gland epithelium morphogenesis","termid":"GO:0060740"},{"relation_name":"part_of","term_name":"prostate glandular acinus development","termid":"GO:0060525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prostate glandular acinus morphogenesis","termid":"GO:0060526"}


id: PBO:0065765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptide YY 2 (pseudogene)","termid":"PBO:0065765"}


id: RO:0002377
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x distributary_of y if and only if x is capable of channeling the flow of a substance to y, where y channels less of the substance than x","direct_ancestors":[{"relation_name":"is_a","term_name":"in_branching_relationship_with","termid":"RO:0002375"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distributary_of","termid":"RO:0002377"}


id: PBO:0038788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase 2","termid":"PBO:0038788"}


id: GO:1900680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ferricrocin biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ferricrocin biosynthetic process","termid":"GO:1900678"},{"relation_name":"is_a","term_name":"positive regulation of ferrichrome biosynthetic process","termid":"GO:1905570"},{"relation_name":"positively_regulates","term_name":"ferricrocin biosynthetic process","termid":"GO:0031171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"positive regulation of ferricrocin biosynthetic process","synonyms":[{"name":"activation of ferricrocin anabolism","type":"exact"},{"name":"activation of ferricrocin biosynthesis","type":"exact"},{"name":"activation of ferricrocin biosynthetic process","type":"narrow"},{"name":"activation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"activation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"activation of ferricrocin formation","type":"exact"},{"name":"activation of ferricrocin synthesis","type":"exact"},{"name":"positive regulation of ferricrocin anabolism","type":"exact"},{"name":"positive regulation of ferricrocin biosynthesis","type":"exact"},{"name":"positive regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"positive regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"positive regulation of ferricrocin formation","type":"exact"},{"name":"positive regulation of ferricrocin synthesis","type":"exact"},{"name":"up regulation of ferricrocin anabolism","type":"exact"},{"name":"up regulation of ferricrocin biosynthesis","type":"exact"},{"name":"up regulation of ferricrocin biosynthetic process","type":"exact"},{"name":"up regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"up regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"up regulation of ferricrocin formation","type":"exact"},{"name":"up regulation of ferricrocin synthesis","type":"exact"},{"name":"up-regulation of ferricrocin anabolism","type":"exact"},{"name":"up-regulation of ferricrocin biosynthesis","type":"exact"},{"name":"up-regulation of ferricrocin biosynthetic process","type":"exact"},{"name":"up-regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"up-regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"up-regulation of ferricrocin formation","type":"exact"},{"name":"up-regulation of ferricrocin synthesis","type":"exact"},{"name":"upregulation of ferricrocin anabolism","type":"exact"},{"name":"upregulation of ferricrocin biosynthesis","type":"exact"},{"name":"upregulation of ferricrocin biosynthetic process","type":"exact"},{"name":"upregulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"upregulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"upregulation of ferricrocin formation","type":"exact"},{"name":"upregulation of ferricrocin synthesis","type":"exact"}],"termid":"GO:1900680"}


id: GO:0072136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cells, resulting in the expansion of a metanephric mesenchymal cell population.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney mesenchymal cell proliferation","termid":"GO:0072135"},{"relation_name":"is_a","term_name":"cell proliferation involved in metanephros development","termid":"GO:0072203"},{"relation_name":"part_of","term_name":"metanephric mesenchyme development","termid":"GO:0072075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric mesenchymal cell proliferation involved in metanephros development","termid":"GO:0072136"}


id: PBO:0082883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyclic nucleotide phosphodiesterase; hydrolyzes ADP-ribose 1'', 2''-cyclic phosphate to ADP-ribose 1''-phosphate; may have a role in tRNA splicing; no detectable phenotype is conferred by null mutation or by overexpression; protein abundance increases in response to DNA replication stress","termid":"PBO:0082883"}


id: PBO:0024848
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Latrunculin Sensitive Cyclin knockout","termid":"PBO:0024848"}


id: GO:0030378
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the synthesis of free D-serine from L-serine.","definition_xrefs":["GOC:kd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"serine racemase activity","secondary_identifiers":["MetaCyc:5.1.1.18-RXN","RHEA:10980","EC:5.1.1.18","Reactome:R-HSA-9014766"],"termid":"GO:0030378"}


id: PBO:0071534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35","termid":"PBO:0071534"}


id: GO:0035582
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Confining a bone morphogenetic protein (BMP) to the extracellular matrix (ECM), such that it is separated from other components of the signaling pathway, including its cell surface receptor. Bone morphogenetic proteins (BMPs) are secreted as homodimers, non-covalently associated with N-terminal pro-peptides, and are targeted to the extracellular matrix through interaction with matrix proteins.","definition_xrefs":["GOC:BHF","PMID:20855508"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of BMP signaling pathway","termid":"GO:0030514"},{"relation_name":"is_a","term_name":"sequestering of extracellular ligand from receptor","termid":"GO:0035581"},{"relation_name":"is_a","term_name":"maintenance of protein location in extracellular region","termid":"GO:0071694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0051179"],"is_obsolete":false,"name":"sequestering of BMP in extracellular matrix","synonyms":[{"name":"BMP sequestration in the ECM","type":"exact"},{"name":"negative regulation of BMP signaling pathway by extracellular sequestering of BMP","type":"exact"},{"name":"negative regulation of BMP signalling pathway by extracellular matrix sequestering of BMP","type":"exact"},{"name":"negative regulation of bone morphogenetic protein signaling pathway by extracellular matrix sequestering of bone morphogenetic protein","type":"exact"}],"termid":"GO:0035582"}


id: FYPO:0005830
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein transport along microtubules is abnormal. Transport of all proteins or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal intracellular protein transport during vegetative growth","termid":"FYPO:0000215"},{"relation_name":"is_a","term_name":"abnormal microtubule-based movement during vegetative growth","termid":"FYPO:0005461"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein transport along microtubule during vegetative growth","synonyms":[{"name":"abnormal protein movement along microtubule during vegetative growth","type":"exact"},{"name":"abnormal protein transport along microtubule during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005830"}


id: GO:0034178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to the endolysosomal toll-like receptor 13.","definition_xrefs":["PMID:16551253","PMID:17328678","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endolysosomal toll-like receptor signaling pathway","termid":"GO:0140894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"toll-like receptor 13 signaling pathway","synonyms":[{"name":"TLR13 signaling pathway","type":"exact"},{"name":"toll-like receptor 13 signalling pathway","type":"exact"}],"termid":"GO:0034178"}


id: GO:1905360
data:
  {"annotated_genes":["SJAG_02233","SJAG_01794","SJAG_03371","SJAG_00596","SJAG_02444","SJAG_00457","SJAG_03081","SJAG_00514","SJAG_04026","SJAG_04509","SJAG_00845","SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[100639,83908,86861,89503,85881,99803],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071521"},{"annotations":[105392,114534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990131"},{"annotations":[105143,102606,90266,103257],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005834"}]},"cv_name":"cellular_component","definition":"A protein complex which is capable of GTPase activity.","definition_xrefs":["GO_REF:0000088","GOC:bhm","GOC:TermGenie","PMID:9178006"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00457":null,"SJAG_00514":null,"SJAG_00596":null,"SJAG_00845":null,"SJAG_01794":null,"SJAG_02233":null,"SJAG_02444":null,"SJAG_03081":null,"SJAG_03371":null,"SJAG_03453":null,"SJAG_04026":null,"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"GTPase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"HRAS-SOS1 complex","type":"narrow"},{"name":"RASH-SOS1 complex","type":"narrow"}],"termid":"GO:1905360","terms_by_termid":{"GO:0005834":null,"GO:0071521":null,"GO:1990131":null}}


id: PBO:0040651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BBSome interacting protein 1","termid":"PBO:0040651"}


id: GO:0005204
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete chondroitin sulfate proteoglycan (obsolete GO:0005204)","synonyms":[{"name":"chondroitin sulfate proteoglycan","type":"exact"},{"name":"chondroitin sulphate proteoglycan","type":"exact"}],"termid":"GO:0005204"}


id: PBO:0081174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger FYVE-type containing 19","termid":"PBO:0081174"}


id: GO:0021569
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of rhombomere 3 over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order.","definition_xrefs":["GOC:jid","GOC:curators","GOC:dgh","GO_REF:0000021","GOC:cls","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere development","termid":"GO:0021546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 3 development","termid":"GO:0021569"}


id: PBO:0053127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphocyte cytosolic protein 1","termid":"PBO:0053127"}


id: GO:0016946
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Cleavage of substrates with Phe and Leu in P2.","definition_xrefs":["EC:3.4.22.41"],"gene_count":0,"genotype_count":0,"name":"obsolete cathepsin F activity (obsolete GO:0016946)","synonyms":[{"name":"cathepsin F activity","type":"exact"}],"termid":"GO:0016946"}


id: FYPO:0003856
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to FR901464. Cells stop growing (and may die) at a concentration of FR901464 that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to FR901464","synonyms":[{"name":"hypersensitive to FR901464","type":"exact"},{"name":"sensitive to FR901464 during mitotic cell cycle","type":"related"},{"name":"sensitive to FR901464 during vegetative growth","type":"exact"}],"termid":"FYPO:0003856"}


id: PBO:0069725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1006, pseudogene","termid":"PBO:0069725"}


id: GO:1990469
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Protein complex found in Drosophila consisting of the gene products of cuff, del and rhi. It regulates the licensing of transcription of dual-strand PIWI interacting RNA (piRNA) source loci by binding to dual-strand-cluster chromatin, probably via the H3K9me3-binding activity of Rhi. Rhi binding brings the putative termination cofactor Cuff in close proximity to the nascent piRNA precursor transcript which it appears to protect from degradation.","definition_xrefs":["GOC:bhm","PMID:24906153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"PET complex","termid":"GO:1990923"},{"relation_name":"part_of","term_name":"germ cell nucleus","termid":"GO:0043073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"Rhino-Deadlock-Cutoff Complex","synonyms":[{"name":"RDC complex","type":"exact"},{"name":"rhi-del-cuff complex","type":"exact"}],"termid":"GO:1990469"}


id: PBO:0085571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein implicated in the regulation of ergosterol biosynthesis; one of a seven member gene family with a common essential function and non-essential unique functions; similar to human oxysterol binding protein (OSBP); SWAT-GFP and mCherry fusion proteins localize to the bud neck and vacuolar membrane; HES1 has a paralog, KES1, that arose from the whole genome duplication","termid":"PBO:0085571"}


id: FYPO:0005923
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of the histone variant H2A.Z found associated with chromatin in subtelomeric regions is higher than normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PMID:21437270","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level in chromatin","termid":"FYPO:0005893"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"increased H2A.Z level at subtelomere","synonyms":[{"name":"H2A.Z accumulation at subtelomere","type":"exact"},{"name":"increased H2A.Z level at subtelomere during mitotic cell cycle","type":"related"},{"name":"increased H2A.Z level at subtelomere during vegetative growth","type":"exact"},{"name":"increased H2A.Z level in chromatin at subtelomere","type":"exact"}],"termid":"FYPO:0005923"}


id: FYPO:0007868
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a substance that inhibits actin polymerization. Cells stop growing (and may die) at a concentration of an actin polymerization inhibitor that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to actin polymerization inhibitor","synonyms":[{"name":"sensitive to actin cytoskeleton damaging agent","type":"related"},{"name":"sensitive to actin polymerisation inhibitor","type":"exact"}],"termid":"FYPO:0007868"}


id: PR:O13803
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A coiled-coil domain-containing protein 82 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00825","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17H9.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.06c","secondary_identifiers":["UniProtKB:O13803"],"synonyms":[{"name":"Spom972h-CCDC82","type":"exact"}],"termid":"PR:O13803"}


id: GO:0031854
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an orexigenic neuropeptide QRFP receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"orexigenic neuropeptide QRFP receptor binding","synonyms":[{"name":"orexigenic neuropeptide QRFP receptor ligand","type":"narrow"}],"termid":"GO:0031854"}


id: GO:0048438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a floral whorl over time, from its formation to the mature structure. A floral whorl is a circular arrangement of parts of a flower arising from a stem of a plant.","definition_xrefs":["GOC:PO_curators","GOC:tb","GOC:go_curators","PO:0025023","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"flower development","termid":"GO:0009908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"floral whorl development","secondary_identifiers":["GO:0048413"],"synonyms":[{"name":"collective phyllome structure development","type":"broad"}],"termid":"GO:0048438"}


id: GO:0005061
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete aryl hydrocarbon receptor nuclear translocator activity (obsolete GO:0005061)","synonyms":[{"name":"aryl hydrocarbon receptor nuclear translocator activity","type":"exact"}],"termid":"GO:0005061"}


id: GO:0021764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the amygdala over time from its initial formation until its mature state. The amygdala is an almond-shaped set of neurons in the medial temporal lobe of the brain that play a key role in processing emotions such as fear and pleasure.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dph","GOC:jid","ISBN:0878937420","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"limbic system development","termid":"GO:0021761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amygdala development","termid":"GO:0021764"}


id: PR:O74874
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ccr4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74874"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose-repressible alcohol dehydrogenase transcriptional effector (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC31H12.08c","synonyms":[{"name":"Spom972h-ccr4","type":"exact"},{"name":"carbon catabolite repressor protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"cytoplasmic deadenylase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74874"}


id: GO:0090010
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by an extracellular ligand binding to a transforming growth factor beta receptor on the surface of a target cell, which contributes to the formation of the primitive streak.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete transforming growth factor beta receptor signaling pathway involved in primitive streak formation (obsolete GO:0090010)","synonyms":[{"name":"TGFbeta signaling pathway involved in primitive streak formation","type":"related"},{"name":"transforming growth factor beta receptor signalling pathway involved in primitive streak formation","type":"exact"}],"termid":"GO:0090010"}


id: PBO:0055793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LOXL2 antisense RNA 1","termid":"PBO:0055793"}


id: PR:O60126
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA topoisomerase 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04045","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.12c","secondary_identifiers":["UniProtKB:O60126"],"synonyms":[{"name":"DNA topoisomerase III (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-topB","type":"exact"}],"termid":"PR:O60126"}


id: GO:0015426
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + polar amino acid(out) = ADP + phosphate + polar amino acid(in).","definition_xrefs":["EC:7.4.2.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ABC-type amino acid transporter activity","termid":"GO:0015424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"ATPase-coupled polar amino acid-transporter activity","secondary_identifiers":["MetaCyc:3.6.3.21-RXN","RHEA:14673"],"synonyms":[{"name":"ATP-dependent polar amino acid-transporter activity","type":"exact"},{"name":"cystine/diaminopimelate porter activity","type":"related"},{"name":"glutamate/aspartate porter activity","type":"related"},{"name":"histidine permease activity","type":"narrow"},{"name":"histidine/arginine/lysine/ornithine porter activity","type":"related"},{"name":"polar amino acid uptake transporter activity","type":"exact"},{"name":"polar amino acid-importing ATPase activity","type":"exact"},{"name":"polar-amino acid ABC transporter","type":"narrow"},{"name":"polar-amino acid-importing ATPase activity","type":"exact"},{"name":"polar-amino acid-transporting ATPase activity","type":"exact"},{"name":"polar-amino-acid-transporting ATPase activity","type":"related"}],"termid":"GO:0015426"}


id: FYPO:0005788
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A DNA recombination phenotype observed in the vegetative growth phase of the life cycle in which gene conversion occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA recombination during vegetative growth","termid":"FYPO:0001345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased gene conversion during vegetative growth","synonyms":[{"name":"increased gene conversion during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005788"}


id: GO:0003001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cellular process that creates a physical entity or change in state, i.e. a signal, that originates in one cell and is used to transfer information to another cell. This process begins with the initial formation of the signal and ends with the mature form and placement of the signal.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete generation of a signal involved in cell-cell signaling (obsolete GO:0003001)","synonyms":[{"name":"formation of a signal","type":"broad"},{"name":"generation of a signal involved in cell-cell signaling","type":"exact"},{"name":"generation of a signal involved in cell-cell signalling","type":"exact"},{"name":"signal generation","type":"broad"}],"termid":"GO:0003001"}


id: PBO:0013442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Cox1101/ mitochondrial ribosomal protein Rsm22 fusion protein","termid":"PBO:0013442"}


id: PATO:0001426
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of purple and brown hue.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Maroon"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maroon","termid":"PATO:0001426"}


id: GO:0071715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of icosanoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Icosanoids are unsaturated C20 fatty acids and skeletally related compounds.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid transport","termid":"GO:0046942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"icosanoid transport","synonyms":[{"name":"eicosanoid transport","type":"exact"}],"termid":"GO:0071715"}


id: PBO:0052153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KCNJ2 antisense RNA 1","termid":"PBO:0052153"}


id: PBO:0039173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A-kinase anchoring protein 5","termid":"PBO:0039173"}


id: PBO:0075175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNRPE pseudogene 5","termid":"PBO:0075175"}


id: GO:0007482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the haltere over time, from its formation to the mature structure. The haltere is the club-shaped 'balancers' found on each side of the metathorax among the true flies (Diptera). They are the much-modified hind wings.","definition_xrefs":["PMID:32659004","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imaginal disc-derived appendage development","termid":"GO:0048737"},{"relation_name":"part_of","term_name":"haltere disc development","termid":"GO:0035216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"haltere development","termid":"GO:0007482"}


id: PBO:0057551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 664b","termid":"PBO:0057551"}


id: GO:1990205
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of catalyzing the conversion of taurine and alpha-ketoglutarate to sulfite, aminoacetaldehyde and succinate under sulfur or cysteine starvation conditions. Its expression is repressed by the presence of sulfate or cysteine. In E. coli it is a homodimer or homotetramer of the protein TauD.","definition_xrefs":["GOC:bhm","PMID:12741810"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005829"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005829","GO:0005737"],"is_obsolete":false,"name":"taurine dioxygenase complex","synonyms":[{"name":"2-aminoethanesulfonate dioxygenase complex","type":"exact"},{"name":"TauD complex","type":"narrow"},{"name":"alpha-ketoglutarate-dependent taurine dioxygenase complex","type":"exact"}],"termid":"GO:1990205"}


id: PBO:0028785
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_methylation_at_protein_coding_gene","termid":"PBO:0028785"}


id: PBO:0079235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TTC9 divergent transcript","termid":"PBO:0079235"}


id: PBO:0087873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional modulator; involved in regulation of meiosis, silencing, and expression of RNR genes; acts as a nuclear anchor to retain the ribonucleotide reductase small subunit heterodimer, Rnr2p-Rnr4p, in the nucleus when cells are not in S phase; contains WD repeats","termid":"PBO:0087873"}


id: PBO:0045443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dpy-30 histone methyltransferase complex regulatory subunit","termid":"PBO:0045443"}


id: GO:0044516
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that activates or increases the frequency, rate or extent of the activity of a glucagon-like peptide receptor 1 in a second organism.","definition_xrefs":["GOC:fj","GOC:jl","PMID:8405712"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of glucagon-like peptide receptor 1 activity in another organism (obsolete GO:0044516)","synonyms":[{"name":"positive regulation of glucagon-like peptide receptor 1 activity in other organism","type":"exact"}],"termid":"GO:0044516"}


id: GO:0010988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of low-density lipoprotein particle clearance. Low-density lipoprotein particle clearance is the process in which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipoprotein particle clearance","termid":"GO:0010984"},{"relation_name":"regulates","term_name":"low-density lipoprotein particle clearance","termid":"GO:0034383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of low-density lipoprotein particle clearance","termid":"GO:0010988"}


id: GO:0008424
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl}-L-asparagine + GDP-L-fucose = N(4)-{N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6)]-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-[alpha-L-fucosyl-(1->6)]-N-acetyl-beta-D-glucosaminyl}asparagine + GDP + H+.","definition_xrefs":["RHEA:12985","EC:2.4.1.68"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-(1->6)-fucosyltransferase activity","termid":"GO:0046921"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"glycoprotein 6-alpha-L-fucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.68-RXN","Reactome:R-HSA-1028788","Reactome:R-HSA-9696980","KEGG_REACTION:R05988"],"synonyms":[{"name":"FucT","type":"related"},{"name":"GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha(1,6)fucosyltransferase activity","type":"related"},{"name":"GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha(1->6)fucosyltransferase activity","type":"related"},{"name":"GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha-(1,6)fucosyltransferase activity","type":"related"},{"name":"GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha-(1->6)fucosyltransferase activity","type":"related"},{"name":"GDP-L-fucose--glycoprotein fucosyltransferase activity","type":"related"},{"name":"GDP-fucose--glycoprotein fucosyltransferase activity","type":"related"},{"name":"GDPfucose-glycoprotein fucosyltransferase activity","type":"related"},{"name":"glycoprotein fucosyltransferase activity","type":"broad"},{"name":"guanosine diphosphofucose--glycoprotein fucosyltransferase activity","type":"related"}],"termid":"GO:0008424"}


id: PBO:0056680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEF2C antisense RNA 2","termid":"PBO:0056680"}


id: PBO:0077108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocase of inner mitochondrial membrane 13","termid":"PBO:0077108"}


id: PBO:0072716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"relaxin family peptide receptor 3","termid":"PBO:0072716"}


id: PBO:0108764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, nutrient sensing, zf-GATA-type Gaf1","termid":"PBO:0108764"}


id: PBO:0040453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP11A upstream neighbor lncRNA","termid":"PBO:0040453"}


id: PBO:0077693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine kinase non receptor 1","termid":"PBO:0077693"}


id: PBO:0016960
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chitin DeAcetylase","termid":"PBO:0016960"}


id: PBO:0034050
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_structural_homology_relationship_with","termid":"PBO:0034050"}


id: FYPO:0006787
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of poly(A)-specific ribonuclease activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal 3'-5'-exoribonuclease activity","termid":"FYPO:0002063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000661","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"abnormal poly(A)-specific ribonuclease activity","termid":"FYPO:0006787"}


id: PBO:0085423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane t-SNARE; involved in fusion of secretory vesicles at the plasma membrane; syntaxin homolog that is functionally redundant with Sso1p; SSO2 has a paralog, SSO1, that arose from the whole genome duplication","termid":"PBO:0085423"}


id: PBO:0003068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I transcription termination factor Reb1","termid":"PBO:0003068"}


id: FYPO:0000303
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in the population undergoes conjugation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased conjugation frequency","synonyms":[{"name":"decreased conjugation efficiency","type":"related"},{"name":"decreased mating frequency","type":"exact"},{"name":"decreased occurrence of mating","type":"exact"},{"name":"reduced conjugation efficiency","type":"related"},{"name":"reduced conjugation frequency","type":"exact"},{"name":"reduced zygote formation","type":"related"}],"termid":"FYPO:0000303"}


id: GO:0034721
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the removal of a methyl group from a trimetylated lysine at position 4 of the histone.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K4 demethylation, trimethyl-H3-K4-specific (obsolete GO:0034721)","synonyms":[{"name":"H3K4 demethylation (me3)","type":"exact"},{"name":"histone H3-K4 tridemethylation","type":"related"}],"termid":"GO:0034721"}


id: PBO:0060545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAV2 antisense RNA 5","termid":"PBO:0060545"}


id: GO:0090249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of the controlled self-propelled movement of a cell that contributes to somitogenic axis elongation.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell migration","termid":"GO:0030334"},{"relation_name":"regulates","term_name":"cell migration involved in somitogenic axis elongation","termid":"GO:0090248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell migration involved in somitogenic axis elongation","synonyms":[{"name":"regulation of cell motility involved in somitogenic axis elongation","type":"broad"}],"termid":"GO:0090249"}


id: PBO:0039903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 5","termid":"PBO:0039903"}


id: MOD:00961
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively reduces the disulfide bond of cystine to form two cysteine residues.","definition_xrefs":["DeltaMass:333"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"L-cystine (cross-link)","termid":"MOD:00034"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"},{"relation_name":"is_a","term_name":"hydrogenated residue","termid":"MOD:01473"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reduction of disulfide crosslink in cystine to two cysteines","termid":"MOD:00961"}


id: internal:obsolete_name
data:
  {"annotation_feature_type":"gene","cv_name":"synonym_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"obsolete_name","termid":"internal:obsolete_name"}


id: GO:0003370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of mesendodermal cells to each other that contributes to the establishment of cell polarity that is part of the directed movement of the cells of the mesendoderm.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion involved in ameboidal cell migration","termid":"GO:0003367"},{"relation_name":"is_a","term_name":"cell-cell adhesion involved in gastrulation","termid":"GO:0070586"},{"relation_name":"part_of","term_name":"establishment of cell polarity involved in mesendodermal cell migration","termid":"GO:0003369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007163","GO:0007155","GO:0008150"],"is_obsolete":false,"name":"cell-cell adhesion involved in mesendodermal cell migration","termid":"GO:0003370"}


id: PBO:0017723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chorismate mutase Aro7 (predicted)","termid":"PBO:0017723"}


id: PBO:0075066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-29","termid":"PBO:0075066"}


id: PATO:0002274
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors.","direct_ancestors":[{"relation_name":"is_a","term_name":"multi-colored","termid":"PATO:0001533"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mottled","termid":"PATO:0002274"}


id: GO:0038105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Binding to a transforming growth factor-beta (TGFbeta) protein in the extracellular region, and inhibiting TGFbeta signaling by preventing TGFbeta from binding to its cell surface receptor.","definition_xrefs":["GOC:signaling","GOC:bf","PMID:19855014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequestering of extracellular ligand from receptor","termid":"GO:0035581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"sequestering of TGFbeta from receptor via TGFbeta binding","synonyms":[{"name":"extracellular sequestering of TGFbeta","type":"broad"},{"name":"extracellular sequestering of transforming growth factor-beta","type":"broad"}],"termid":"GO:0038105"}


id: GO:0018422
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of mannose-1-phosphate to a serine residue in a protein.","definition_xrefs":["GOC:mah","PMID:10037765"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016780"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016780"],"is_obsolete":false,"name":"GDP-mannose:serine-protein mannose-1-phosphotransferase activity","termid":"GO:0018422"}


id: GO:0097271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained at, a location within a cellular bud neck.","definition_xrefs":["PMID:22344253","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to bud neck","synonyms":[{"name":"protein localisation to bud neck","type":"exact"},{"name":"protein localization to cellular bud neck","type":"exact"}],"termid":"GO:0097271"}


id: PR:Q9UT09
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAP8A3.07c gene.","definition_xrefs":["UniProtKB:Q9UT09","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP8A3.07c","synonyms":[{"name":"3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DAHP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPAP8A3.07c","type":"exact"},{"name":"phospho-2-keto-3-deoxyheptonate aldolase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT09"}


id: FYPO:0003313
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an elongated germ tube, and in which the nucleus does not divide. The cell does not divide, and eventually dies.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, with elongated germ tube","termid":"FYPO:0002379"},{"relation_name":"is_a","term_name":"inviable elongated mononucleate vegetative cell","termid":"FYPO:0004255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, mononucleate cell with elongated germ tube","synonyms":[{"name":"inviable after spore germination, without cell division, elongated mononucleate cell","type":"exact"},{"name":"inviable germinated spore, without cell division, mononucleate cell with elongated germ tube","type":"exact"},{"name":"inviable mononucleate germinated spore with elongated germ tube","type":"exact"},{"name":"lethal after spore germination, without cell division, mononucleate cell with elongated germ tube","type":"exact"},{"name":"mononucleate after spore germination with elongated germ tube","type":"exact"}],"termid":"FYPO:0003313"}


id: GO:0006326
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete bent DNA binding (obsolete GO:0006326)","synonyms":[{"name":"bent DNA binding","type":"exact"}],"termid":"GO:0006326"}


id: GO:0141209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A nuclear receptor-mediated signaling pathway initiated by an oxysterol binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:9794827","PMID:37541371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear receptor-mediated steroid hormone signaling pathway","termid":"GO:0030518"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"oxysterol receptor signaling pathway","synonyms":[{"name":"intracellular oxysterol receptor signaling pathway","type":"exact"},{"name":"nuclear receptor-mediated oxysterol signaling pathway","type":"exact"}],"termid":"GO:0141209"}


id: PBO:0015216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEA complex subunit, ubiquitin-protein ligase E3","termid":"PBO:0015216"}


id: GO:0052889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of reactions in which 9,9'-di-cis-zeta-carotene is desaturated to 7,9,9'-tri-cis-neurosporene, and then 7,9,7',9'-tetra-cis-lycopene. The overall reaction for this process is: 9,9'-di-cis-zeta-carotene + 2 quinone = 2 quinol + 7,9,7',9'-tetra-cis-lycopene.","definition_xrefs":["MetaCyc:PWY-6475"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carotene metabolic process","termid":"GO:0016119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene","synonyms":[{"name":"7,9,7',9'-tetra-cis-lycopene biosynthesis from 9,9'-di-cis-zeta-carotene","type":"exact"},{"name":"9,9'-di-cis-zeta-carotene catabolism to 7,9,7',9'-tetra-cis-lycopene","type":"exact"}],"termid":"GO:0052889"}


id: GO:0017082
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Combining with a mineralocorticoid and transmitting the signal to the transcriptional machinery by binding to a specific DNA sequence in order to modulate transcription by RNA polymerase II.","definition_xrefs":["PMID:20932876","GOC:signaling"],"gene_count":0,"genotype_count":0,"name":"obsolete mineralocorticoid receptor activity (obsolete GO:0017082)","synonyms":[{"name":"aldosterone receptor","type":"narrow"}],"termid":"GO:0017082"}


id: GO:0005352
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: alpha-glucoside(out) + H+(out) = alpha-glucoside(in) + H+(in). Alpha-glucosides include trehalose, maltose, turanose, isomaltose, alpha-methylglucoside, maltotriose, palatinose, trehalose and melezitose.","definition_xrefs":["TC:2.A.1.1.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-glucoside transmembrane transporter activity","termid":"GO:0015151"},{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"alpha-glucoside:proton symporter activity","synonyms":[{"name":"alpha-glucoside:hydrogen symporter activity","type":"exact"},{"name":"general alpha-glucoside transporter activity","type":"broad"},{"name":"general alpha-glucoside:hydrogen symporter activity","type":"exact"},{"name":"general alpha-glucoside:proton symporter activity","type":"exact"}],"termid":"GO:0005352"}


id: PBO:0056349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP6 domain containing 1","termid":"PBO:0056349"}


id: FYPO:0006925
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Rad51 accumulates at or near replication fork barriers is lower than normal.","definition_xrefs":["PomBase:mah","PMID:31149897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased number of Rad51 foci at mitotic DNA replication fork barriers","synonyms":[{"name":"decreased number of Rad51 foci at mitotic DNA replication fork barriers during mitotic cell cycle","type":"related"},{"name":"decreased number of Rad51 foci at mitotic DNA replication fork barriers during vegetative growth","type":"related"},{"name":"reduced number of Rad51 foci at mitotic DNA replication fork barriers","type":"exact"}],"termid":"FYPO:0006925"}


