# alleles

id: SJAG_00028:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rga6","product":"RhoGAP for Cdc42, Rga6","uniquename":"SJAG_00028"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta rga6delta","display_uniquename":"rga4delta__rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga6delta","display_uniquename":"rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga6delta wee1-as8(T582G aa)","display_uniquename":"rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"rga6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"viable vegetative cell with increased cell diameter","termid":"FYPO:0006616"}],"references_by_uniquename":{},"uniquename":"SJAG_00028:allele-1"}


id: SJAG_00118:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mid2","product":"medial ring protein, anillin Mid2","uniquename":"SJAG_00118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},{"display_name":"mid2delta","display_uniquename":"mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]}],"name":"mid2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000032","FYPO:0000631"],"is_obsolete":false,"name":"multiseptate vegetative cell","termid":"FYPO:0000118"}],"references_by_uniquename":{},"uniquename":"SJAG_00118:allele-1"}


id: SJAG_00124:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"product":"NRG1-like transcriptional repressor, zinc finger C2H2-type","uniquename":"SJAG_00124"},"genes_by_uniquename":{},"genotypes":[{"display_name":"SJAG_00124delta","display_uniquename":"SJAG_00124delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]}]},{"display_name":"SJAG_00124delta sty1delta","display_uniquename":"SJAG_00124delta__sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}],"name":"SJAG_00124delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"}],"references_by_uniquename":{},"uniquename":"SJAG_00124:allele-1"}


id: SJAG_00266:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"atf1","product":"DNA-binding transcription factor, Atf-CREB family Atf1","uniquename":"SJAG_00266"},"genes_by_uniquename":{},"genotypes":[{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]}],"name":"atf1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0002058","FYPO:0005447","FYPO:0000003","FYPO:0002060","FYPO:0002057"],"is_obsolete":false,"name":"abolished cell population growth at high temperature","termid":"FYPO:0004481"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased mating efficiency","termid":"FYPO:0000708"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased quorum sensing response","termid":"FYPO:0007824"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal branching","termid":"FYPO:0007777"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0001985","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0002683","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to latrunculin A","termid":"FYPO:0000107"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to oxidative stress","termid":"FYPO:0000726"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to salt stress","termid":"FYPO:0000271"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to sodium dodecyl sulfate","termid":"FYPO:0000841"}],"references_by_uniquename":{},"uniquename":"SJAG_00266:allele-1"}


id: SJAG_00364:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad3","product":"ATR checkpoint kinase Rad3","uniquename":"SJAG_00364"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad3delta","display_uniquename":"rad3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00364:allele-1","expression":"Null"}]}]}],"name":"rad3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_00364:allele-1"}


id: SJAG_00409:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gpd1","product":"glycerol-3-phosphate dehydrogenase Gpd1","uniquename":"SJAG_00409"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]}],"name":"gpd1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0005568","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal vegetative cell polarity","termid":"FYPO:0000026"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0005447","FYPO:0002058","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"}],"references_by_uniquename":{},"uniquename":"SJAG_00409:allele-1"}


id: SJAG_00426:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"P363S","gene":{"name":"bbl1","product":"ER phosphatidate cytidylyltransferase Bbl1","uniquename":"SJAG_00426"},"genes_by_uniquename":{},"genotypes":[{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"bbl1-P363S","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal lipid droplet morphology","termid":"FYPO:0000356"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal tubular endoplasmic reticulum morphology","termid":"FYPO:0006433"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular diglyceride level","termid":"FYPO:0004695"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular triglyceride level during vegetative growth","termid":"FYPO:0002227"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002057","FYPO:0002058","FYPO:0000257","FYPO:0000139","FYPO:0000003","FYPO:0002060"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"references_by_uniquename":{},"uniquename":"SJAG_00426:allele-1"}


id: SJAG_00429:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad26","product":"ATRIP, ATR checkpoint kinase regulatory subunit Rad26","uniquename":"SJAG_00429"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad26delta","display_uniquename":"rad26delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}]}],"name":"rad26delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_00429:allele-1"}


id: SJAG_00514:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"scd1","product":"RhoGEF Scd1","uniquename":"SJAG_00514"},"genes_by_uniquename":{},"genotypes":[{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]}],"name":"scd1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0007773","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0005447","FYPO:0002058","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_00514:allele-1"}


id: SJAG_00601:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rip1","product":"Rieske iron-sulfur protein, ubiquinol-cytochrome-c reductase complex subunit 5, Rip1","uniquename":"SJAG_00601"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]}],"name":"rip1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000301","FYPO:0000257"],"is_obsolete":false,"name":"normal mating","termid":"FYPO:0000760"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal spore germination","termid":"FYPO:0000579"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal sporulation","termid":"FYPO:0000590"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002057","FYPO:0002058","FYPO:0000257","FYPO:0000139","FYPO:0000003","FYPO:0002060"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"references_by_uniquename":{},"uniquename":"SJAG_00601:allele-1"}


id: SJAG_00610:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pck2","product":"protein kinase C (PKC)-like Pck2","uniquename":"SJAG_00610"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]}],"name":"pck2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002274","FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein phosphorylation","termid":"FYPO:0002678"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002274","FYPO:0001320","FYPO:0002494","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0002682","FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caspofungin","termid":"FYPO:0000079"}],"references_by_uniquename":{},"uniquename":"SJAG_00610:allele-1"}


id: SJAG_00871:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"cut3-T19E","gene":{"name":"cut3","product":"condensin complex SMC subunit Smc4","uniquename":"SJAG_00871"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cut3-T19E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"}],"references_by_uniquename":{},"uniquename":"SJAG_00871:allele-1"}


id: SJAG_00993:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"byr1","product":"MAP kinase kinase Byr1","uniquename":"SJAG_00993"},"genes_by_uniquename":{},"genotypes":[{"display_name":"byr1delta","display_uniquename":"byr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00993:allele-1","expression":"Null"}]}]}],"name":"byr1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_00993:allele-1"}


id: SJAG_01050:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nur1","product":"Lem2-Nur1 complex subunit Nur1","uniquename":"SJAG_01050"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nur1delta","display_uniquename":"nur1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]}]},{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}],"name":"nur1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001132"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein localization to nuclear envelope during vegetative growth","termid":"FYPO:0007073"}],"references_by_uniquename":{},"uniquename":"SJAG_01050:allele-1"}


id: SJAG_01081:allele-1
data:
  {"allele_type":"nonsense_mutation","alleles_by_uniquename":{},"description":"S427>stop","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6-domE(S427>stop)","display_uniquename":"ade6-domE-S427>stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"ade6-domE","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-1"}


id: SJAG_01081:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"Q262A","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6-domK(Q262A aa)","display_uniquename":"ade6-domK-Q262A-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"ade6-domK","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-2"}


id: SJAG_01081:allele-3
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ade6","product":"phosphoribosylaminoimidazole carboxylase Ade6","uniquename":"SJAG_01081"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ade6delta","display_uniquename":"ade6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01081:allele-3","expression":"Null"}]}]}],"name":"ade6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for adenine","termid":"FYPO:0000747"}],"references_by_uniquename":{},"uniquename":"SJAG_01081:allele-3"}


id: SJAG_01113:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R47K","gene":{"product":"mating-type transcription factor (Pc-like)","uniquename":"SJAG_01113"},"genes_by_uniquename":{},"genotypes":[],"name":"mat-Pc-R47K","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_01113:allele-1"}


id: SJAG_01143:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mid1","product":"anillin-related medial ring protein Mid1","uniquename":"SJAG_01143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta mid2delta","display_uniquename":"mid1delta__mid2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00118:allele-1","expression":"Null"}]}]},{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}],"name":"mid1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000032","FYPO:0001320","FYPO:0004803","FYPO:0001985","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring myosin filament organization","termid":"FYPO:0000231"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to medial cortex during mitotic interphase","termid":"FYPO:0007177"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001320","FYPO:0004803","FYPO:0000032","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of protein localization to cell division site","termid":"FYPO:0003946"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000032","FYPO:0000631"],"is_obsolete":false,"name":"multiseptate vegetative cell","termid":"FYPO:0000118"}],"references_by_uniquename":{},"uniquename":"SJAG_01143:allele-1"}


id: SJAG_01143:allele-2
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"711-723","gene":{"name":"mid1","product":"anillin-related medial ring protein Mid1","uniquename":"SJAG_01143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1-delta(711-723 a.a.)(aa)","display_uniquename":"mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"mid1-delta(711-723 a.a.)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"references_by_uniquename":{},"uniquename":"SJAG_01143:allele-2"}


id: SJAG_01181:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pek1","product":"MAP kinase kinase Pek1","uniquename":"SJAG_01181"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pek1delta","display_uniquename":"pek1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01181:allele-1","expression":"Null"}]}]}],"name":"pek1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_01181:allele-1"}


id: SJAG_01205:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"crb2","product":"BRCT and tudor domain DNA checkpoint protein Crb2","uniquename":"SJAG_01205"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1delta crb2delta","display_uniquename":"chk1delta__crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]},{"display_name":"crb2delta","display_uniquename":"crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]}],"name":"crb2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_01205:allele-1"}


id: SJAG_01242:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps32","product":"ESCRT III complex subunit Vps32","uniquename":"SJAG_01242"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]}],"name":"vps32delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_01242:allele-1"}


id: SJAG_01330:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mad2","product":"mitotic spindle checkpoint protein Mad2","uniquename":"SJAG_01330"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]}],"name":"mad2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000298","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"abolished mitotic spindle assembly checkpoint","termid":"FYPO:0004318"}],"references_by_uniquename":{},"uniquename":"SJAG_01330:allele-1"}


id: SJAG_01355:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cox6","product":"cytochrome c oxidase subunit VI","uniquename":"SJAG_01355"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cox6delta","display_uniquename":"cox6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01355:allele-1","expression":"Null"}]}]}],"name":"cox6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000301","FYPO:0000257"],"is_obsolete":false,"name":"normal mating","termid":"FYPO:0000760"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal spore germination","termid":"FYPO:0000579"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal sporulation","termid":"FYPO:0000590"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0002057","FYPO:0002058","FYPO:0000257","FYPO:0000139","FYPO:0000003","FYPO:0002060"],"is_obsolete":false,"name":"normal vegetative cell population growth","termid":"FYPO:0001357"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_01355:allele-1"}


id: SJAG_01374:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nup132","product":"nucleoporin, WD repeat Nup132","uniquename":"SJAG_01374"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nup132delta","display_uniquename":"nup132delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01374:allele-1","expression":"Null"}]}]}],"name":"nup132delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal nuclear pore localization","termid":"FYPO:0003973"}],"references_by_uniquename":{},"uniquename":"SJAG_01374:allele-1"}


id: SJAG_01410:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad51","product":"RecA family recombinase Rad51/Rhp51","uniquename":"SJAG_01410"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad51delta","display_uniquename":"rad51delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01410:allele-1","expression":"Null"}]}]}],"name":"rad51delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"}],"references_by_uniquename":{},"uniquename":"SJAG_01410:allele-1"}


id: SJAG_01458:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"acb1","product":"fatty-acyl-CoA binding protein Acb1","uniquename":"SJAG_01458"},"genes_by_uniquename":{},"genotypes":[{"display_name":"acb1delta","display_uniquename":"acb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01458:allele-1","expression":"Null"}]}]}],"name":"acb1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000654"],"is_obsolete":false,"name":"normal fatty acid synthase activity","termid":"FYPO:0000719"}],"references_by_uniquename":{},"uniquename":"SJAG_01458:allele-1"}


id: SJAG_01539:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nde1","product":"external mitochondrial NADH dehydrogenase (ubiquinone) Nde1/Nde2","uniquename":"SJAG_01539"},"genes_by_uniquename":{},"genotypes":[],"name":"nde1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_01539:allele-1"}


id: SJAG_01605:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad9","product":"checkpoint clamp complex protein Rad9","uniquename":"SJAG_01605"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad9delta","display_uniquename":"rad9delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01605:allele-1","expression":"Null"}]}]}],"name":"rad9delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"}],"references_by_uniquename":{},"uniquename":"SJAG_01605:allele-1"}


id: SJAG_01680:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"chk1","product":"Chk1 protein kinase","uniquename":"SJAG_01680"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1delta","display_uniquename":"chk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]}]},{"display_name":"chk1delta crb2delta","display_uniquename":"chk1delta__crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]}],"name":"chk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_01680:allele-1"}


id: SJAG_01680:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"P470L","gene":{"name":"chk1","product":"Chk1 protein kinase","uniquename":"SJAG_01680"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1-P470L(aa)","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]}],"name":"chk1-P470L","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"}],"references_by_uniquename":{},"synonyms":[{"name":"chk1- hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"}


id: SJAG_01718:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"byr2","product":"MAP kinase kinase kinase Byr2","uniquename":"SJAG_01718"},"genes_by_uniquename":{},"genotypes":[{"display_name":"byr2delta","display_uniquename":"byr2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01718:allele-1","expression":"Null"}]}]}],"name":"byr2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_01718:allele-1"}


id: SJAG_01745:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"lem2","product":"LEM domain nuclear inner membrane protein Heh1/Lem2","uniquename":"SJAG_01745"},"genes_by_uniquename":{},"genotypes":[{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]}],"name":"lem2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0002403","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization","termid":"FYPO:0001375"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"protein mislocalized to endoplasmic reticulum during vegetative growth","termid":"FYPO:0003657"}],"references_by_uniquename":{},"uniquename":"SJAG_01745:allele-1"}


id: SJAG_01753:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mdh1","product":"malate dehydrogenase Mdh1","uniquename":"SJAG_01753"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mdh1delta","display_uniquename":"mdh1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01753:allele-1","expression":"Null"}]}]}],"name":"mdh1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_01753:allele-1"}


id: SJAG_01787:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pck1","product":"protein kinase C (PKC)-like Pck1","uniquename":"SJAG_01787"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},{"display_name":"pck1delta pmk1delta","display_uniquename":"pck1delta__pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}],"name":"pck1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002274","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0005447","FYPO:0002682","FYPO:0000003"],"is_obsolete":false,"name":"resistance to caspofungin","termid":"FYPO:0005152"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0001985","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to tacrolimus and magnesium chloride","termid":"FYPO:0007522"}],"references_by_uniquename":{},"uniquename":"SJAG_01787:allele-1"}


id: SJAG_01794:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"scd2","product":"Cdc42 GTPase complex scaffold subunit Scd2","uniquename":"SJAG_01794"},"genes_by_uniquename":{},"genotypes":[{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]}],"name":"scd2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0007773","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0005447","FYPO:0002058","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_01794:allele-1"}


id: SJAG_01834:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pom152","product":"nucleoporin, transmembrane ring glycoprotein subunit Pom152","uniquename":"SJAG_01834"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pom152delta","display_uniquename":"pom152delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01834:allele-1","expression":"Null"}]}]}],"name":"pom152delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_01834:allele-1"}


id: SJAG_01906:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nem1","product":"serine/threonine protein phosphatase (Nem1-Spo7 complex) catalytic subunit Nem1","uniquename":"SJAG_01906"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]}],"name":"nem1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_01906:allele-1"}


id: SJAG_01946:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cem1","product":"3-oxoacyl-[acyl-carrier-protein]-synthase condensing enzyme Cem1","uniquename":"SJAG_01946"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},{"display_name":"cem1delta","display_uniquename":"cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]}],"name":"cem1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002060","FYPO:0002057","FYPO:0005447","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0000003","FYPO:0002060","FYPO:0000257"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_01946:allele-1"}


id: SJAG_01956:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E405K ts","gene":{"name":"nuc2","product":"anaphase-promoting complex TPR lobe subcomplex subunit Apc3","uniquename":"SJAG_01956"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"nuc2-1051","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"}],"references_by_uniquename":{},"uniquename":"SJAG_01956:allele-1"}


id: SJAG_02007:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"etr1","product":"enoyl-[acyl-carrier protein] reductase","uniquename":"SJAG_02007"},"genes_by_uniquename":{},"genotypes":[],"name":"etr1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_02007:allele-1"}


id: SJAG_02013:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pyp1","product":"protein tyrosine phosphatase Pyp1","uniquename":"SJAG_02013"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pyp1delta","display_uniquename":"pyp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02013:allele-1","expression":"Null"}]}]}],"name":"pyp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal branching","termid":"FYPO:0007778"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"}],"references_by_uniquename":{},"uniquename":"SJAG_02013:allele-1"}


id: SJAG_02252:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ace2","product":"DNA-binding transcription factor Ace2","uniquename":"SJAG_02252"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]}],"name":"ace2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished cell separation after cytokinesis","termid":"FYPO:0006557"}],"references_by_uniquename":{},"uniquename":"SJAG_02252:allele-1"}


id: SJAG_02266:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad24","product":"14-3-3 protein Rad24","uniquename":"SJAG_02266"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]},{"display_name":"rad24delta","display_uniquename":"rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]}],"name":"rad24delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"}],"references_by_uniquename":{},"uniquename":"SJAG_02266:allele-1"}


id: SJAG_02342:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wis1","product":"MAP kinase kinase Wis1","uniquename":"SJAG_02342"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wis1delta","display_uniquename":"wis1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02342:allele-1","expression":"Null"}]}]}],"name":"wis1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02342:allele-1"}


id: SJAG_02379:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gap1","product":"RasGAP Gap1","uniquename":"SJAG_02379"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gap1delta","display_uniquename":"gap1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02379:allele-1","expression":"Null"}]}]}],"name":"gap1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0007773","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02379:allele-1"}


id: SJAG_02392:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pom1","product":"DYRK family cell polarity protein kinase Pom1","uniquename":"SJAG_02392"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}],"name":"pom1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":3,"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein localization to medial cortex during vegetative growth","termid":"FYPO:0000731"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to medial cortex during mitotic interphase","termid":"FYPO:0007177"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0004803","FYPO:0000631","FYPO:0001985","FYPO:0000138","FYPO:0005447","FYPO:0000032"],"is_obsolete":false,"name":"actomyosin contractile ring displaced from midpoint","termid":"FYPO:0002026"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased bipolar index","termid":"FYPO:0003535"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001320","FYPO:0004803","FYPO:0000032","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"mislocalized hyphal septum","termid":"FYPO:0007801"}],"references_by_uniquename":{},"uniquename":"SJAG_02392:allele-1"}


id: SJAG_02409:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"stc1","product":"CLRC complex-Argonaute linker protein Stc1","uniquename":"SJAG_02409"},"genes_by_uniquename":{},"genotypes":[{"display_name":"stc1delta","display_uniquename":"stc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02409:allele-1","expression":"Null"}]}]}],"name":"stc1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_02409:allele-1"}


id: SJAG_02486:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ste6","product":"RasGEF Ste6","uniquename":"SJAG_02486"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ste6delta","display_uniquename":"ste6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02486:allele-1","expression":"Null"}]}]}],"name":"ste6delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02486:allele-1"}


id: SJAG_02527:allele-1
data:
  {"allele_type":"disruption","alleles_by_uniquename":{},"description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene":{"name":"lig4","product":"DNA repair ligase Lig4","uniquename":"SJAG_02527"},"genes_by_uniquename":{},"genotypes":[{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]}],"name":"lig4::KanMX6","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"increased flocculation during vegetative growth","termid":"FYPO:0009111"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"increased sporulation frequency","termid":"FYPO:0000588"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability following cellular response to UV","termid":"FYPO:0005705"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability in stationary phase upon glucose starvation","termid":"FYPO:0005231"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0001985","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002060","FYPO:0000003","FYPO:0002057","FYPO:0001985","FYPO:0005447","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to heat shock","termid":"FYPO:0001408"}],"references_by_uniquename":{},"uniquename":"SJAG_02527:allele-1"}


id: SJAG_02576:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad25","product":"14-3-3 protein Rad25","uniquename":"SJAG_02576"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad25delta","display_uniquename":"rad25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02576:allele-1","expression":"Null"}]}]}],"name":"rad25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"}],"references_by_uniquename":{},"uniquename":"SJAG_02576:allele-1"}


id: SJAG_02592:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sty1","product":"MAP kinase Sty1","uniquename":"SJAG_02592"},"genes_by_uniquename":{},"genotypes":[{"display_name":"SJAG_00124delta sty1delta","display_uniquename":"SJAG_00124delta__sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00124:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}],"name":"sty1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000032","FYPO:0005447","FYPO:0001320","FYPO:0004803","FYPO:0000631","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished actomyosin contractile ring assembly, clumped medial cortical nodes","termid":"FYPO:0002998"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0002058","FYPO:0005447","FYPO:0000003","FYPO:0002060","FYPO:0002057"],"is_obsolete":false,"name":"abolished cell population growth at high temperature","termid":"FYPO:0004481"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased quorum sensing response","termid":"FYPO:0007824"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased hyphal branching","termid":"FYPO:0007777"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"increased hyphal length","termid":"FYPO:0007775"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased mycelial expansion","termid":"FYPO:0007779"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0002494","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased protein phosphorylation","termid":"FYPO:0002680"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0001985","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0002683","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to latrunculin A","termid":"FYPO:0000107"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to oxidative stress","termid":"FYPO:0000726"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to salt stress","termid":"FYPO:0000271"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02592:allele-1"}


id: SJAG_02594:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"arb1","product":"argonaute inhibitor protein 1","uniquename":"SJAG_02594"},"genes_by_uniquename":{},"genotypes":[{"display_name":"arb1delta","display_uniquename":"arb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02594:allele-1","expression":"Null"}]}]}],"name":"arb1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_02594:allele-1"}


id: SJAG_02621:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ago1","product":"argonaute","uniquename":"SJAG_02621"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ago1delta","display_uniquename":"ago1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]}]},{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"ago1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_02621:allele-1"}


id: SJAG_02668:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R77W","gene":{"name":"mpe1","product":"mRNA cleavage ubiquitin-protein ligase E3 Mpe1","uniquename":"SJAG_02668"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"mpe1-R77W","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_02668:allele-1"}


id: SJAG_02695:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"tip1","product":"CLIP170 family protein Tip1","uniquename":"SJAG_02695"},"genes_by_uniquename":{},"genotypes":[{"display_name":"tip1delta","display_uniquename":"tip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02695:allele-1","expression":"Null"}]}]}],"name":"tip1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"}],"references_by_uniquename":{},"uniquename":"SJAG_02695:allele-1"}


id: SJAG_02763:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]}],"name":"ned1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_02763:allele-1"}


id: SJAG_02763:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"D422E,D424E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"ned1cat","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"}


id: SJAG_02763:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S235A; S651","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1S235A/S651(S235A; S651 aa)","display_uniquename":"ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"ned1S235A/S651","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased lipid droplet formation","termid":"FYPO:0006945"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal nuclear envelope morphology","termid":"FYPO:0003751"}],"references_by_uniquename":{},"synonyms":[{"name":"refractory to phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-3"}


id: SJAG_02763:allele-4
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S235E; S651E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]}],"name":"ned1S235E/S651E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased lipid droplet formation","termid":"FYPO:0006054"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"}


id: SJAG_02763:allele-5
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S499E; S538E; T620E; T638E; S651E","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]}],"name":"ned1-5E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased lipid droplet formation","termid":"FYPO:0006054"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_02763:allele-5"}


id: SJAG_02763:allele-6
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"S499A; S538A; T620A; T638A; S651A","gene":{"name":"ned1","product":"lipin, phosphatidate phosphatase Ned1","uniquename":"SJAG_02763"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ned1-5A(S499A; S538A; T620A; T638A; S651A aa)","display_uniquename":"ned1-5A-S499A__S538A__T620A__T638A__S651A-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-6","expression":"Not assayed or wild type"}]}]}],"name":"ned1-5A","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased lipid droplet formation","termid":"FYPO:0006945"}],"references_by_uniquename":{},"synonyms":[{"name":"refractory to potential proline-directed kinase phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-6"}


id: SJAG_02771:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rad1","product":"checkpoint clamp complex protein Rad1","uniquename":"SJAG_02771"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rad1delta","display_uniquename":"rad1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02771:allele-1","expression":"Null"}]}]}],"name":"rad1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":8,"genotype_count":8,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal transition","termid":"FYPO:0007782"}],"references_by_uniquename":{},"uniquename":"SJAG_02771:allele-1"}


id: SJAG_02796:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"A343T","gene":{"name":"pyk1","product":"pyruvate kinase","uniquename":"SJAG_02796"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pyk1-A343T(aa)","display_uniquename":"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02796:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"pyk1-A343T","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0005447","FYPO:0000654","FYPO:0001985","FYPO:0000002","FYPO:0000661"],"is_obsolete":false,"name":"abnormal pyruvate kinase activity","termid":"FYPO:0007363"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal glucose consumption","termid":"FYPO:0004165"}],"references_by_uniquename":{},"uniquename":"SJAG_02796:allele-1"}


id: SJAG_02819:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"efc25","product":"Ras1 GEF Efc25","uniquename":"SJAG_02819"},"genes_by_uniquename":{},"genotypes":[{"display_name":"efc25delta","display_uniquename":"efc25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02819:allele-1","expression":"Null"}]}]}],"name":"efc25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0007773","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased sporulation frequency","termid":"FYPO:0000584"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_02819:allele-1"}


id: SJAG_02860:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wcs1","product":"blue light photoreceptor Wcs1","uniquename":"SJAG_02860"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wcs1delta","display_uniquename":"wcs1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02860:allele-1","expression":"Null"}]}]}],"name":"wcs1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000298"],"is_obsolete":false,"name":"abnormal blue light response","termid":"FYPO:0008031"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003"],"is_obsolete":false,"name":"decreased sexual agglutination in response to blue light","termid":"FYPO:0008046"}],"references_by_uniquename":{},"uniquename":"SJAG_02860:allele-1"}


id: SJAG_02923:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"spk1","product":"MAP kinase Spk1","uniquename":"SJAG_02923"},"genes_by_uniquename":{},"genotypes":[{"display_name":"spk1delta","display_uniquename":"spk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02923:allele-1","expression":"Null"}]}]}],"name":"spk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":25,"genotype_count":31,"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"abnormal hyphal growth","termid":"FYPO:0007773"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_02923:allele-1"}


id: SJAG_03048:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"G146D","gene":{"name":"cdc2","product":"cyclin-dependent protein kinase Cdk1/Cdc2","uniquename":"SJAG_03048"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc2-1w(G146D aa)","display_uniquename":"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03048:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cdc2-1w","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_03048:allele-1"}


id: SJAG_03118:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"leo1","product":"RNA polymerase II associated Paf1 complex subunit Leo1","uniquename":"SJAG_03118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"clr4delta leo1delta","display_uniquename":"clr4delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"leo1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03118:allele-1"}


id: SJAG_03118:allele-2
data:
  {"allele_type":"nonsense_mutation","alleles_by_uniquename":{},"description":"aa61->stop","gene":{"name":"leo1","product":"RNA polymerase II associated Paf1 complex subunit Leo1","uniquename":"SJAG_03118"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta frameshift(aa61->stop)","display_uniquename":"dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"frameshift","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03118:allele-2"}


id: SJAG_03143:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sep1","product":"DNA-binding forkhead transcription factor Sep1","uniquename":"SJAG_03143"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}],"name":"sep1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished cell separation after cytokinesis","termid":"FYPO:0006557"}],"references_by_uniquename":{},"uniquename":"SJAG_03143:allele-1"}


id: SJAG_03164:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ura4","product":"orotidine 5'-phosphate decarboxylase Ura4","uniquename":"SJAG_03164"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ura4delta","display_uniquename":"ura4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03164:allele-1","expression":"Null"}]}]}],"name":"ura4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for uracil","termid":"FYPO:0001012"}],"references_by_uniquename":{},"uniquename":"SJAG_03164:allele-1"}


id: SJAG_03198:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]},{"display_name":"oar2delta","display_uniquename":"oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]}],"name":"oar2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002060","FYPO:0002057","FYPO:0005447","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0000003","FYPO:0002060","FYPO:0000257"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_03198:allele-1"}


id: SJAG_03198:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"Y189D cold sensitive","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}]}],"name":"oar2-51","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002060","FYPO:0002057","FYPO:0005447","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0000003","FYPO:0002060","FYPO:0000257"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"uniquename":"SJAG_03198:allele-2"}


id: SJAG_03198:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R72A,L75A,R106A,L109A","gene":{"name":"oar2","product":"3-oxoacyl-[acyl-carrier-protein] reductase Oar2","uniquename":"SJAG_03198"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},{"display_name":"oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]}],"name":"oar2-dm12","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002060","FYPO:0002057","FYPO:0005447","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0000003","FYPO:0002060","FYPO:0000257"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"}],"references_by_uniquename":{},"synonyms":[{"name":"destruction box mutations","reference":"PMID:23786411","type":"exact"}],"uniquename":"SJAG_03198:allele-3"}


id: SJAG_03250:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sst4","product":"sorting receptor for ubiquitinated membrane proteins, ESCRT 0 complex subunit Sst4","uniquename":"SJAG_03250"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sst4delta","display_uniquename":"sst4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03250:allele-1","expression":"Null"}]}]}],"name":"sst4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal nuclear envelope morphology during mitosis","termid":"FYPO:0003780"}],"references_by_uniquename":{},"uniquename":"SJAG_03250:allele-1"}


id: SJAG_03351:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"A186T ts","gene":{"name":"cut23","product":"anaphase-promoting complex TPR lobe subcomplex subunit Apc8","uniquename":"SJAG_03351"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cut23-415","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"}],"references_by_uniquename":{},"uniquename":"SJAG_03351:allele-1"}


id: SJAG_03356:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rdp1","product":"RNA-directed RNA polymerase (RDRC) Rdp1","uniquename":"SJAG_03356"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rdp1delta","display_uniquename":"rdp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03356:allele-1","expression":"Null"}]}]}],"name":"rdp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_03356:allele-1"}


id: SJAG_03384:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wis4","product":"MAP kinase kinase kinase Wis4","uniquename":"SJAG_03384"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wis4delta","display_uniquename":"wis4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03384:allele-1","expression":"Null"}]}]}],"name":"wis4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_03384:allele-1"}


id: SJAG_03444:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"agn1","product":"cell wall glucan endo-1,3-alpha-glucosidase Agn1","uniquename":"SJAG_03444"},"genes_by_uniquename":{},"genotypes":[{"display_name":"agn1delta","display_uniquename":"agn1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03444:allele-1","expression":"Null"}]}]}],"name":"agn1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal cell separation after cytokinesis resulting in chained cells","termid":"FYPO:0001971"}],"references_by_uniquename":{},"uniquename":"SJAG_03444:allele-1"}


id: SJAG_03449:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]}],"name":"man1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0002403","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000641","FYPO:0001985","FYPO:0000337","FYPO:0001320","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"unequal nucleolus inheritance","termid":"FYPO:0004683"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-1"}


id: SJAG_03449:allele-2
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"man1DHEH","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Man1DHEH","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0002403","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000641","FYPO:0001985","FYPO:0000337","FYPO:0001320","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-2"}


id: SJAG_03449:allele-3
data:
  {"allele_type":"amino_acid_insertion_and_deletion","alleles_by_uniquename":{},"description":"man1-1-488","gene":{"name":"man1","product":"LEM domain nuclear inner membrane protein Man1, Sad1 interacting factor","uniquename":"SJAG_03449"},"genes_by_uniquename":{},"genotypes":[{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"man1-1-488","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0002403","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000641","FYPO:0001985","FYPO:0000337","FYPO:0001320","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal rDNA separation","termid":"FYPO:0000671"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":4,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","termid":"FYPO:0004890"}],"references_by_uniquename":{},"uniquename":"SJAG_03449:allele-3"}


id: SJAG_03453:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ras1","product":"GTPase Ras1","uniquename":"SJAG_03453"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]}],"name":"ras1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0007773","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished hyphal growth","termid":"FYPO:0007789"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0005447","FYPO:0002058","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"references_by_uniquename":{},"uniquename":"SJAG_03453:allele-1"}


id: SJAG_03575:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E548K ts","gene":{"name":"apc2","product":"anaphase-promoting complex cullin family subunit Apc2","uniquename":"SJAG_03575"},"genes_by_uniquename":{},"genotypes":[{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]}],"name":"apc2-361","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased duration of mitotic anaphase","secondary_identifiers":["FYPO:0000617"],"termid":"FYPO:0000618"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"increased protein level during vegetative growth","secondary_identifiers":["FYPO:0000762"],"termid":"FYPO:0001327"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"termid":"FYPO:0000324"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0000003","FYPO:0002060","FYPO:0000257"],"is_obsolete":false,"name":"normal cell population growth at high temperature","termid":"FYPO:0000674"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"unequal nucleolus inheritance","termid":"FYPO:0004683"}],"references_by_uniquename":{},"uniquename":"SJAG_03575:allele-1"}


id: SJAG_03581:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gef1","product":"RhoGEF for Cdc42 (Gef1)","uniquename":"SJAG_03581"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gef1delta","display_uniquename":"gef1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03581:allele-1","expression":"Null"}]}]}],"name":"gef1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_03581:allele-1"}


id: SJAG_03596:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"L264P,P442T","gene":{"name":"cdc15","product":"F-BAR domain protein Cdc15","uniquename":"SJAG_03596"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc15-A(L264P,P442T aa)","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]}],"name":"cdc15-A","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000032","FYPO:0001320","FYPO:0004803","FYPO:0001985","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring myosin filament organization","termid":"FYPO:0000231"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of protein localization to cell division site","termid":"FYPO:0003946"}],"references_by_uniquename":{},"uniquename":"SJAG_03596:allele-1"}


id: SJAG_03689:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"dcr1","product":"dicer","uniquename":"SJAG_03689"},"genes_by_uniquename":{},"genotypes":[{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta frameshift(aa61->stop)","display_uniquename":"dcr1delta__frameshift-aa61->stop-nonsense_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},{"display_name":"dcr1delta mpe1-R77W(aa)","display_uniquename":"dcr1delta__mpe1-R77W-R77W-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02668:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"dcr1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased siRNA level","termid":"FYPO:0004205"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased centromeric transcript level","termid":"FYPO:0004982"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased rate of transposition","termid":"FYPO:0000595"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased telomeric transcript level","termid":"FYPO:0004573"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at transposable element during vegetative growth","termid":"FYPO:0006989"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal transposition","termid":"FYPO:0000596"},{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03689:allele-1"}


id: SJAG_03720:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"tel1","product":"ATM checkpoint kinase","uniquename":"SJAG_03720"},"genes_by_uniquename":{},"genotypes":[{"display_name":"tel1delta","display_uniquename":"tel1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03720:allele-1","expression":"Null"}]}]}],"name":"tel1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0007773","FYPO:0000002"],"is_obsolete":false,"name":"increased invasive hyphal growth","termid":"FYPO:0007774"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002058","FYPO:0000257","FYPO:0000139","FYPO:0002057","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on camptothecin","termid":"FYPO:0001690"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0000257"],"is_obsolete":false,"name":"normal viability following cellular response to hydroxyurea","termid":"FYPO:0004693"}],"references_by_uniquename":{},"uniquename":"SJAG_03720:allele-1"}


id: SJAG_03753:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mkh1","product":"MEK kinase (MEKK) Mkh1","uniquename":"SJAG_03753"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mkh1delta","display_uniquename":"mkh1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03753:allele-1","expression":"Null"}]}]}],"name":"mkh1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_03753:allele-1"}


id: SJAG_03783:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps24","product":"ESCRT III complex subunit Vps24","uniquename":"SJAG_03783"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps24delta","display_uniquename":"vps24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03783:allele-1","expression":"Null"}]}]}],"name":"vps24delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":18,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein localization","termid":"FYPO:0001370"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03783:allele-1"}


id: SJAG_03891:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"alx1","product":"ESCRT-III regulator Alx1","uniquename":"SJAG_03891"},"genes_by_uniquename":{},"genotypes":[{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]}],"name":"alx1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"}],"references_by_uniquename":{},"uniquename":"SJAG_03891:allele-1"}


id: SJAG_03891:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E308V","gene":{"name":"alx1","product":"ESCRT-III regulator Alx1","uniquename":"SJAG_03891"},"genes_by_uniquename":{},"genotypes":[],"name":"rim20E308V","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_03891:allele-2"}


id: SJAG_03892:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}],"name":"vps4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein localization to heterochromatin","termid":"FYPO:0004718"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001132"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"increased telomere tethering at nuclear periphery during mitosis","termid":"FYPO:0007770"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-1"}


id: SJAG_03892:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"E233Q","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Vps4-EQ","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-2"}


id: SJAG_03892:allele-3
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"I307T L327S","gene":{"name":"vps4","product":"AAA family ATPase Vps4","uniquename":"SJAG_03892"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},{"display_name":"vps4-ts(I307T L327S aa)","display_uniquename":"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"vps4-ts","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_03892:allele-3"}


id: SJAG_03916:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"chp1","product":"heterochromatin (HP1) family chromodomain protein Chp1","uniquename":"SJAG_03916"},"genes_by_uniquename":{},"genotypes":[{"display_name":"chp1delta","display_uniquename":"chp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03916:allele-1","expression":"Null"}]}]}],"name":"chp1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_03916:allele-1"}


id: SJAG_03920:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"sdh3","product":"succinate dehydrogenase (ubiquinone) cytochrome b subunit","uniquename":"SJAG_03920"},"genes_by_uniquename":{},"genotypes":[{"display_name":"sdh3delta","display_uniquename":"sdh3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03920:allele-1","expression":"Null"}]}]}],"name":"sdh3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_03920:allele-1"}


id: SJAG_03940:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nem2","product":"serine/threonine protein phosphatase (Nem1-Spo7 complex) regulatory subunit","uniquename":"SJAG_03940"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]}],"name":"nem2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002274","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"decreased protein dephosphorylation during vegetative growth","termid":"FYPO:0005957"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"excess endoplasmic reticulum membrane present","termid":"FYPO:0001784"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":6,"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"excess nuclear envelope present","termid":"FYPO:0001556"}],"references_by_uniquename":{},"uniquename":"SJAG_03940:allele-1"}


id: SJAG_04009:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ste11","product":"DNA-binding transcription factor Ste11","uniquename":"SJAG_04009"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ste11delta","display_uniquename":"ste11delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04009:allele-1","expression":"Null"}]}]}],"name":"ste11delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":10,"genotype_count":10,"interesting_parent_ids":["FYPO:0001985","FYPO:0000301","FYPO:0005447"],"is_obsolete":false,"name":"sterile","secondary_identifiers":["FYPO:0000638"],"termid":"FYPO:0000280"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04009:allele-1"}


id: SJAG_04061:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"arb2","product":"argonaute binding protein 2","uniquename":"SJAG_04061"},"genes_by_uniquename":{},"genotypes":[{"display_name":"arb2delta","display_uniquename":"arb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04061:allele-1","expression":"Null"}]}]}],"name":"arb2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_04061:allele-1"}


id: SJAG_04152:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ndi1","product":"internal mitochondrial NADH dehydrogenase (ubiquinone) Ndi1","uniquename":"SJAG_04152"},"genes_by_uniquename":{},"genotypes":[],"name":"ndi1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_04152:allele-1"}


id: SJAG_04280:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"T582G","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"rga6delta wee1-as8(T582G aa)","display_uniquename":"rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"wee1-as8","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0004803","FYPO:0000002","FYPO:0005568","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal establishment or maintenance of actin cytoskeleton polarity during vegetative growth","termid":"FYPO:0000198"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormally monopolar protein localization to cell tip","termid":"FYPO:0005503"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased protein localization to non-growing cell tip","termid":"FYPO:0002870"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000032","FYPO:0000631","FYPO:0000002","FYPO:0000138","FYPO:0004803","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"viable thin vegetative cell","termid":"FYPO:0001877"}],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-1"}


id: SJAG_04280:allele-2
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"G788E","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]},{"display_name":"wee1-G788E(aa)","display_uniquename":"wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"wee1-G788E","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"viable small vegetative cell","termid":"FYPO:0000648"}],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-2"}


id: SJAG_04280:allele-3
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wee1","product":"M phase inhibitor protein kinase Wee1","uniquename":"SJAG_04280"},"genes_by_uniquename":{},"genotypes":[],"name":"wee1delta","phenotypes":[],"references_by_uniquename":{},"uniquename":"SJAG_04280:allele-3"}


id: SJAG_04284:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"nup61","product":"nucleoporin Nup61","uniquename":"SJAG_04284"},"genes_by_uniquename":{},"genotypes":[{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]}],"name":"nup61delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":11,"genotype_count":16,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal nuclear envelope organization","termid":"FYPO:0000815"}],"references_by_uniquename":{},"uniquename":"SJAG_04284:allele-1"}


id: SJAG_04287:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cds1","product":"DNA replication checkpoint kinase Cds1","uniquename":"SJAG_04287"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cds1delta","display_uniquename":"cds1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04287:allele-1","expression":"Null"}]}]}],"name":"cds1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_04287:allele-1"}


id: SJAG_04312:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pka1","product":"cAMP-dependent protein kinase catalytic subunit Pka1","uniquename":"SJAG_04312"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]}],"name":"pka1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":25,"genotype_count":31,"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"abnormal hyphal growth","termid":"FYPO:0007773"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"elongated vegetative cell","termid":"FYPO:0001122"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002057","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"loss of viability in stationary phase","termid":"FYPO:0000245"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0001985","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to caffeine during vegetative growth","termid":"FYPO:0000097"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to hydrogen peroxide","termid":"FYPO:0000087"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to potassium chloride","termid":"FYPO:0001214"}],"references_by_uniquename":{},"uniquename":"SJAG_04312:allele-1"}


id: SJAG_04332:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"I30T,T572P","gene":{"name":"cdc25","product":"protein tyrosine phosphatase (M phase inducer) Cdc25","uniquename":"SJAG_04332"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"cdc25-D9","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985","FYPO:0000004","FYPO:0000631","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"inviable elongated mononucleate cell with cell cycle arrest at mitotic G2/M phase transition","termid":"FYPO:0007701"}],"references_by_uniquename":{},"uniquename":"SJAG_04332:allele-1"}


id: SJAG_04349:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps28","product":"ESCRT I complex subunit Vps28","uniquename":"SJAG_04349"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps28delta","display_uniquename":"vps28delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04349:allele-1","expression":"Null"}]}]}],"name":"vps28delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"}],"references_by_uniquename":{},"uniquename":"SJAG_04349:allele-1"}


id: SJAG_04464:allele-1
data:
  {"allele_type":"amino_acid_mutation","alleles_by_uniquename":{},"description":"R152C","gene":{"name":"pim1","product":"RCC1 family Ran GEF","uniquename":"SJAG_04464"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}],"name":"pim1-R152C","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic anaphase","termid":"FYPO:0000619"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal mitotic cell cycle arrest with condensed chromosomes","termid":"FYPO:0003738"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0002060","FYPO:0002057","FYPO:0002058","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell population growth at high temperature","secondary_identifiers":["FYPO:0000247"],"termid":"FYPO:0000082"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"inviable vegetative cell","termid":"FYPO:0001489"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0002403","FYPO:0000004","FYPO:0005447"],"is_obsolete":false,"name":"inviable vegetative cell with fragmented nuclear envelope during mitotic telophase","termid":"FYPO:0003976"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":4,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability at high temperature","termid":"FYPO:0001387"}],"references_by_uniquename":{},"synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}


id: SJAG_04489:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"did4","product":"ESCRT III complex subunit Did4","uniquename":"SJAG_04489"},"genes_by_uniquename":{},"genotypes":[{"display_name":"did4delta","display_uniquename":"did4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04489:allele-1","expression":"Null"}]}]}],"name":"did4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":18,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein localization","termid":"FYPO:0001370"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"}],"references_by_uniquename":{},"uniquename":"SJAG_04489:allele-1"}


id: SJAG_04522:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"rga4","product":"RhoGAP Rga4","uniquename":"SJAG_04522"},"genes_by_uniquename":{},"genotypes":[{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},{"display_name":"rga4delta rga6delta","display_uniquename":"rga4delta__rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"rga4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished geometry scaling","termid":"FYPO:0007783"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished polar cell growth","termid":"FYPO:0004105"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000032","FYPO:0000631","FYPO:0000002","FYPO:0000138","FYPO:0004803","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"},{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"mislocalized septum","termid":"FYPO:0004293"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"viable vegetative cell with increased cell diameter","termid":"FYPO:0006616"}],"references_by_uniquename":{},"uniquename":"SJAG_04522:allele-1"}


id: SJAG_04551:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"pck1delta pmk1delta","display_uniquename":"pck1delta__pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]},{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]}],"name":"pmk1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":4,"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"multiseptate cell","termid":"FYPO:0004295"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0002682","FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to caspofungin","termid":"FYPO:0000079"},{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-1"}


id: SJAG_04551:allele-2
data:
  {"allele_type":"amino_acid_insertion","alleles_by_uniquename":{},"description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sj(ins82-105)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002274","FYPO:0001320","FYPO:0002494","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0002682","FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-2"}


id: SJAG_04551:allele-3
data:
  {"allele_type":"other","alleles_by_uniquename":{},"description":"Pmk1 from S. pombe","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sp(Pmk1 from S. pombe)","display_uniquename":"Pmk1Sp-Pmk1_from_S._pombe-other-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sp","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0002682","FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-3"}


id: SJAG_04551:allele-4
data:
  {"allele_type":"partial_amino_acid_deletion","alleles_by_uniquename":{},"description":"Pmk1 from S. pombe with deleted residues 82-105","gene":{"name":"pmk1","product":"MAP kinase Pmk1","uniquename":"SJAG_04551"},"genes_by_uniquename":{},"genotypes":[{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]}],"name":"Pmk1Sp(delta82-105)","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0002274","FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein phosphorylation","termid":"FYPO:0002678"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0002274","FYPO:0002494"],"is_obsolete":false,"name":"abolished protein phosphorylation during vegetative growth","termid":"FYPO:0002033"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":5,"interesting_parent_ids":["FYPO:0002682","FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"resistance to tacrolimus and magnesium chloride","termid":"FYPO:0007521"}],"references_by_uniquename":{},"uniquename":"SJAG_04551:allele-4"}


id: SJAG_04574:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"clr4","product":"histone lysine H3-K9 methyltransferase (Suv39) Clr4","uniquename":"SJAG_04574"},"genes_by_uniquename":{},"genotypes":[{"display_name":"clr4delta","display_uniquename":"clr4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]}]},{"display_name":"clr4delta leo1delta","display_uniquename":"clr4delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04574:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]}],"name":"clr4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002059"],"is_obsolete":false,"name":"inviable vegetative cell population","termid":"FYPO:0002061"}],"references_by_uniquename":{},"uniquename":"SJAG_04574:allele-1"}


id: SJAG_04671:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"mrc1","product":"claspin, Mrc1","uniquename":"SJAG_04671"},"genes_by_uniquename":{},"genotypes":[{"display_name":"mrc1delta","display_uniquename":"mrc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04671:allele-1","expression":"Null"}]}]}],"name":"mrc1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":6,"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal hyphal growth","termid":"FYPO:0007790"},{"cv_name":"fission_yeast_phenotype","gene_count":7,"genotype_count":8,"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to camptothecin","termid":"FYPO:0000085"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":6,"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to hydroxyurea","termid":"FYPO:0000088"}],"references_by_uniquename":{},"uniquename":"SJAG_04671:allele-1"}


id: SJAG_04697:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"gms1","product":"Golgi UDP-galactose transmembrane transporter Gms1","uniquename":"SJAG_04697"},"genes_by_uniquename":{},"genotypes":[{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}],"name":"gms1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"cell lysis during hyphal growth phase","termid":"FYPO:0008029"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0002060","FYPO:0002057","FYPO:0002058","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell population growth at high temperature","secondary_identifiers":["FYPO:0000247"],"termid":"FYPO:0000082"},{"cv_name":"fission_yeast_phenotype","gene_count":6,"genotype_count":9,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased hyphal length","termid":"FYPO:0007776"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":8,"interesting_parent_ids":["FYPO:0000002","FYPO:0007773"],"is_obsolete":false,"name":"decreased mycelial expansion","termid":"FYPO:0007780"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0002946","FYPO:0002274","FYPO:0001985","FYPO:0002494","FYPO:0003290"],"is_obsolete":false,"name":"galactose absent from cell wall glycoprotein glycan","termid":"FYPO:0003727"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0002683","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to hygromycin B","termid":"FYPO:0000106"}],"references_by_uniquename":{},"uniquename":"SJAG_04697:allele-1"}


id: SJAG_04703:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"for3","product":"formin For3","uniquename":"SJAG_04703"},"genes_by_uniquename":{},"genotypes":[{"display_name":"for3delta","display_uniquename":"for3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04703:allele-1","expression":"Null"}]}]}],"name":"for3delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001320","FYPO:0004803","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"actin cables absent from cell","termid":"FYPO:0003315"},{"cv_name":"fission_yeast_phenotype","gene_count":13,"genotype_count":15,"interesting_parent_ids":["FYPO:0005447","FYPO:0002058","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000005","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"spherical cell","termid":"FYPO:0001956"}],"references_by_uniquename":{},"uniquename":"SJAG_04703:allele-1"}


id: SJAG_04777:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"win1","product":"MAP kinase kinase kinase Win1","uniquename":"SJAG_04777"},"genes_by_uniquename":{},"genotypes":[{"display_name":"win1delta","display_uniquename":"win1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04777:allele-1","expression":"Null"}]}]}],"name":"win1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":23,"genotype_count":24,"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable cell","termid":"FYPO:0000124"}],"references_by_uniquename":{},"uniquename":"SJAG_04777:allele-1"}


id: SJAG_04843:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"fum1","product":"fumarate hydratase Fum1","uniquename":"SJAG_04843"},"genes_by_uniquename":{},"genotypes":[{"display_name":"fum1delta","display_uniquename":"fum1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04843:allele-1","expression":"Null"}]}]}],"name":"fum1delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":31,"genotype_count":36,"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"viable cell population","termid":"FYPO:0002058"}],"references_by_uniquename":{},"uniquename":"SJAG_04843:allele-1"}


id: SJAG_04883:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"ptp4","product":"phosphatidate cytidylyltransferase Ptp4/Dgk1","uniquename":"SJAG_04883"},"genes_by_uniquename":{},"genotypes":[{"display_name":"ptp4delta","display_uniquename":"ptp4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04883:allele-1","expression":"Null"}]}]}],"name":"ptp4delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal mitosis","termid":"FYPO:0001007"}],"references_by_uniquename":{},"uniquename":"SJAG_04883:allele-1"}


id: SJAG_04912:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"vps25","product":"ESCRT II complex subunit Vps25","uniquename":"SJAG_04912"},"genes_by_uniquename":{},"genotypes":[{"display_name":"vps25delta","display_uniquename":"vps25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04912:allele-1","expression":"Null"}]}]}],"name":"vps25delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":3,"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein complex localization","termid":"FYPO:0001440"}],"references_by_uniquename":{},"uniquename":"SJAG_04912:allele-1"}


id: SJAG_05207:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"cmp7","product":"ESCRT III complex subunit, nuclear envelope specific subunit Cmp7","uniquename":"SJAG_05207"},"genes_by_uniquename":{},"genotypes":[{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]}],"name":"cmp7delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":4,"genotype_count":7,"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abnormally clustered protein localization to nuclear envelope","termid":"FYPO:0007771"},{"cv_name":"fission_yeast_phenotype","gene_count":3,"genotype_count":5,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002060","FYPO:0002057","FYPO:0005447","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"decreased cell population growth at low temperature","secondary_identifiers":["FYPO:0002175"],"termid":"FYPO:0000080"},{"cv_name":"fission_yeast_phenotype","gene_count":5,"genotype_count":5,"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic nuclear membrane reassembly","termid":"FYPO:0007772"},{"cv_name":"fission_yeast_phenotype","gene_count":1,"genotype_count":1,"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to leptomycin B","termid":"FYPO:0000714"},{"cv_name":"fission_yeast_phenotype","gene_count":9,"genotype_count":9,"interesting_parent_ids":["FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"slow vegetative cell population growth","termid":"FYPO:0001234"}],"references_by_uniquename":{},"uniquename":"SJAG_05207:allele-1"}


id: SJAG_05242:allele-1
data:
  {"allele_type":"deletion","alleles_by_uniquename":{},"description":"deletion","gene":{"name":"wcs2","product":"blue light signalling transcription factor, zf-GATA type Wcs2","uniquename":"SJAG_05242"},"genes_by_uniquename":{},"genotypes":[{"display_name":"wcs2delta","display_uniquename":"wcs2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05242:allele-1","expression":"Null"}]}]}],"name":"wcs2delta","phenotypes":[{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000002","FYPO:0000298"],"is_obsolete":false,"name":"abnormal blue light response","termid":"FYPO:0008031"},{"cv_name":"fission_yeast_phenotype","gene_count":2,"genotype_count":2,"interesting_parent_ids":["FYPO:0000003"],"is_obsolete":false,"name":"decreased sexual agglutination in response to blue light","termid":"FYPO:0008046"}],"references_by_uniquename":{},"uniquename":"SJAG_05242:allele-1"}


# refs

id: GO_REF:0000028
data:
  {"abstract":"This GO reference describes the criteria used in assigning the evidence codes of IDA (ECO:0000314), IEP (ECO:0000270), ISS (ECO:0000250), IGC (ECO_0000317), RCA (ECO:0000245) and IEA (ECO:0000501) to annotate gene products from PAMGO_MGG. Standard BLASTP from NCBI was used (http://www.ncbi.nih.gov/blast) to iteratively search reciprocal best hits and thus identify orthologs between predicted proteins of Magnaporthe grisea and GO proteins from multiple organisms with published association to GO terms. The alignments were manually reviewed for those hits with e-value equal to zero and with 80% or better coverage of both query and subject sequences, and for those hits with e<=10^-20, pid >=35 and sequence coverage >=80%. Furthermore, experimental or reviewed data from literature and other sources were incorporated into the GO annotation. IDA was assigned to an annotation if normal function of its gene was determined through transfections into a cell line and overexpression. IEP was assigned to an annotation if according to microarray experiments, its gene was upregulated in a biological process and the fold change was equal to or bigger than 10, or if according to Massively Parallel Signature Sequencing (MPSS), its gene was upregulated only in a certain biological process and the fold change was equal to or bigger than 10. ISS was assigned to an annotation if the entry at the With_column was experimentally characterized and the pairwise alignments were manually reviewed. IGC was assigned to an annotation if it based on comparison and analysis of gene location and structure, clustering of genes, and phylogenetic reconstruction of these genes. RCA was assigned to an annotation if it based on integrated computational analysis of whole genome microarray data, and matches to InterPro, pfam, and COG etc. IEA was assigned to an annotation if its function assignment based on computational work, and no manual review was done.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"PAMGO_MGG curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Criteria for IDA, IEP, ISS, IGC, RCA, and IEA assignment in PAMGO_MGG","uniquename":"GO_REF:0000028"}


id: GO_REF:0000022
data:
  {"abstract":"GO terms describing processes, functions, and cellular components related to the immune system have existed in the GO from its beginning and been used extensively in the annotation of gene products. However, particularly in the biological process ontology, the initial set of terms relating to immunology failed to cover the breadth of known immunological processes, and in many cases diverged from current usage and understanding in their names, definitions, and ontological placement. As part of a larger effort to improve the representation of immunology in the GO, a GO Content Meeting was held November 15-16, 2005, at The Institute for Genomic Research, to discuss improvements to representation of immunology in the biological process ontology of the GO. As a result of the meeting, a number of high level terms for immunological processes were created, an overall structure for immunologically related terms was established, and certain existing terms were renamed or redefined as well to bring them in line with current usage.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Alison Deckhut Augustine (1), Alan Collmer (2), Judith A. Blake (3, 4), Candace W. Collmer (2, 3), Shane C. Burgess (5), Lindsay Grey Cowell (6), Jennifer I. Clark (3, 7), Bernard de Bono (7), Russell T. Collins (8), Alexander D. Diehl (3, 4), Michelle Gwinn Giglio (3, 9), Jamie A. Lee (10), Linda Hannick (3, 9), Jane Lomax (3, 7), Midori A. Harris (3, 7), Christopher J. Mungall (3, 11), David P. Hill (3, 4), Richard H. Scheuermann (10), Amelia Ireland (3, 7), Alessandro Sette (12) (1. NIAID, 2. Cornell University, 3. The GO Consortium, 4. Mouse Genome Informatics, 5. Mississippi State University, 6. Duke University, 7. EMBL-EBI, 8. University of Cambridge, 9. The Institute for Genomic Research, 10. U.T. Southwestern Medical Center, 11. HHMI, 12. La Jolla Institute for Allergy and Immunology)","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Improving the representation of immunology in the biological process Ontology","uniquename":"GO_REF:0000022"}


id: GO_REF:0000062
data:
  {"abstract":"We have created a standard template for classes describing processes occurring in parts of the cell. The underlying equivalence axiom template is \"P and 'occurs in' some C\", where P is a biological process and C is a cellular component.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of processes occurring in parts of the cell in the Gene Ontology","uniquename":"GO_REF:0000062"}


id: GO_REF:0000091
data:
  {"abstract":"We have created a standard template for classes describing the cell migration process for a cell type as a biological process. The underlying equivalence axiom template is \"'cell migration' and 'alters_location_of' some C\", where C is a native cell (CL:0000004).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of cell migration as biological processes in the Gene Ontology","uniquename":"GO_REF:0000091"}


id: GO_REF:0000083
data:
  {"abstract":"We have created a standard template for classes describing the morphogenesis of a plant structure as a biological process. The underlying equivalence axiom template is \"'anatomical structure morphogenesis' and 'results in morphogenesis of' some P\", where P is a plant anatomical entity (PO:0025131).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of plant morphogenesis as biological process in the Gene Ontology","uniquename":"GO_REF:0000083"}


id: PMID:34656184
data:
  {"abstract":"In most fungi, quinone-dependent Class-II dihydroorotate dehydrogenases (DHODs) are essential for pyrimidine biosynthesis. Coupling of these Class-II DHODHs to mitochondrial respiration makes their in vivo activity dependent on oxygen availability. Saccharomyces cerevisiae and closely related yeast species harbor a cytosolic Class-I DHOD (Ura1) that uses fumarate as electron acceptor and thereby enables anaerobic pyrimidine synthesis. Here, we investigate DHODs from three fungi (the Neocallimastigomycete Anaeromyces robustus and the yeasts Schizosaccharomyces japonicus and Dekkera bruxellensis) that can grow anaerobically but, based on genome analysis, only harbor a Class-II DHOD.\nHeterologous expression of putative Class-II DHOD-encoding genes from fungi capable of anaerobic, pyrimidine-prototrophic growth (Arura9, SjURA9, DbURA9) in an S. cerevisiae ura1Δ strain supported aerobic as well as anaerobic pyrimidine prototrophy. A strain expressing DbURA9 showed delayed anaerobic growth without pyrimidine supplementation. Adapted faster growing DbURA9-expressing strains showed mutations in FUM1, which encodes fumarase. GFP-tagged SjUra9 and DbUra9 were localized to S. cerevisiae mitochondria, while ArUra9, whose sequence lacked a mitochondrial targeting sequence, was localized to the yeast cytosol. Experiments with cell extracts showed that ArUra9 used free FAD and FMN as electron acceptors. Expression of SjURA9 in S. cerevisiae reproducibly led to loss of respiratory competence and mitochondrial DNA. A cysteine residue (C265 in SjUra9) in the active sites of all three anaerobically active Ura9 orthologs was shown to be essential for anaerobic activity of SjUra9 but not of ArUra9.\nActivity of fungal Class-II DHODs was long thought to be dependent on an active respiratory chain, which in most fungi requires the presence of oxygen. By heterologous expression experiments in S. cerevisiae, this study shows that phylogenetically distant fungi independently evolved Class-II dihydroorotate dehydrogenases that enable anaerobic pyrimidine biosynthesis. Further structure-function studies are required to understand the mechanistic basis for the anaerobic activity of Class-II DHODs and an observed loss of respiratory competence in S. cerevisiae strains expressing an anaerobically active DHOD from Sch. japonicus.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Bouwknegt J, Koster CC, Vos AM, Ortiz-Merino RA, Wassink M, Luttik MAH, van den Broek M, Hagedoorn PL, Pronk JT","authors_abbrev":"Bouwknegt J et al.","canto_added_date":"2023-05-04 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Fungal Biol Biotechnol 2021 Oct 16;8(1):10","cv_annotations":{},"doi":"10.1186/s40694-021-00117-4","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2021-10-17","pubmed_publication_date":"16 Oct 2021","terms_by_termid":{},"title":"Class-II dihydroorotate dehydrogenases from three phylogenetically distant fungi support anaerobic pyrimidine biosynthesis.","uniquename":"PMID:34656184"}


id: GO_REF:0000021
data:
  {"abstract":"Current genetic and molecular studies in many model organisms are aimed at understanding formation and development of the nervous system. Up until this point, the GO has had a very shallow representation of processes pertaining to the nervous system. In June 2006, curators from MGI and ZFIN met with researchers studying central nervous system development to improve the representation of these processes in GO. In particular, emphasis was placed on three areas that are being addressed actively in current research: forebrain development, hindbrain development and neural tube development. This collaboration resulted in the addition of over 500 terms that reflect the development of the forebrain, the hindbrain, and the neural tube from the perspective of biological process and anatomical structure.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Judith Blake (1, 2), William Bug (3), Rex Chisholm (1, 4), Jennifer Clark (1, 5), Erika Feltrin (6), Jacqueline Finger (2), David Hill (1, 2), Midori Harris (1, 5), Terry Hayamizu (2), Doug Howe (9), Maryanne Martone (7), Kathleen Millen (8), Francis Sele (4) (1. The Gene Ontology Consortium, 2. Mouse Genome Informatics, Bar Harbor, ME, 3. Drexel University, Philadelphia, PA, 4. Northwestern University, Chicago, IL, 5. EMBL-EBI, Hinxton, Cambridgeshire, UK, 6. The University of Padua, Padua, Italy, 7. The University of California at San Diego, San Diego, CA, 8. The University of Chicago, Chicago, IL, 9. The Zebrafish Information Network, University of Oregon, Eugene, OR)","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Improving the representation of central nervous system development in the biological process ontology","uniquename":"GO_REF:0000021"}


id: GO_REF:0000113
data:
  {"abstract":"The TFClass (http://tfclass.bioinf.med.uni-goettingen.de/index.jsf) database provides a comprehensive classification of mammalian DNA binding transcription factors (DbTFs) based on their DNA binding domains (DBDs) (PMID:29087517). TFClass classifies mammalian DbTFs by a five-level classification in which the four highest levels represent groups defined by structural and sequence similarities (superclass, class, family, subfamily, and genera) (more details at http://www.edgar-wingender.de/TFClass_schema.html). This classification is based on the combination of background knowledge of the molecular structural features of DBDs (PMID:9340487, PMID:23427989) and phylogenetic trees constructed via multiple sequence alignment with hierarchical clustering of manually validated DBDs and/or full-length protein sequences retrieved from UniProt (PMID:23427989, PMID:23180794, PMID:23427989). ","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Marcio Luis Acencio (1), George Georghiou (2), Sandra Orchard (2), Liv Thommensen (1), Martin Kuiper (1) and Astrid Lægreid (1). (1) Norwegian University of Science and Technology (NTNU), Trondheim, Norway; (2) European Bioinformatics Institute (EBI), Hinxton, Cambridgeshire, United Kingdom","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Gene Ontology annotation of human sequence-specific DNA binding transcription factors (DbTFs) based on the TFClass database","uniquename":"GO_REF:0000113"}


id: GO_REF:0000008
data:
  {"abstract":"The sequence conservation that permits the establishment of orthology between mouse and rat or mouse and human genes is a strong predictor of the conservation of function for the gene product across these species. Therefore, in instances where a mouse gene product has not been functionally characterized, but its human or rat orthologs have, Mouse Genome Informatics (MGI) curators append the GO terms associated with the orthologous gene(s) to the mouse gene. Only those GO terms assigned by experimental determination to the ortholog of the mouse gene will be adopted by MGI. GO terms that are assigned to the ortholog of the mouse gene computationally (i.e. IEA), will not be transferred to the mouse ortholog. The evidence code represented by this citation is Inferred by Sequence Orthology (ISO).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Mouse Genome Informatics scientific curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Gene Ontology annotation by the MGI curatorial staff, curated orthology","uniquename":"GO_REF:0000008"}


id: PMID:31732056
data:
  {"abstract":"Vitis davidii Föex is widely planted in South China as a potential wine making grape. In this study, yeast communities during the spontaneous fermentations of two varieties of Vitis davidii Föex in Guizhou, China were investigated. Hanseniaspora uvarum, Pichia terricola, Saccharomyces cerevisiae/S. mikatae, and Schizosaccharomyces japonicus were the four main yeast species detected by culture-dependent and high-throughput sequencing approaches. However, the composition of minor yeast species was quite different as revealed by the two approaches. Ten yeast species including Debaryomyces hansenii, Rhodotorula mucilaginosa, Sporidiobolus paraoseus, Starmerella bacillaris, Zygoascus meyerae, etc. were detected by culture-dependent approaches, whereas the other five species were found by high-throughput sequencing analysis. S. japonicus was widely found during spontaneous fermentations and its concentrations were mostly higher than that of S. cerevisiae. The difference in grape varieties and fermentation conditions contributed to yeast diversity. The results of this study provide basic information on indigenous yeast diversity from Vitis davidii Föex in Guizhou, which would help to exploit the potential of non-Saccharomyces yeast species with good oenological attributes.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Wang C, Wu C, Qiu S","authors_abbrev":"Wang C et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Biotech","citation":"Food Res Int 2019 12;126:108582","cv_annotations":{},"doi":"10.1016/j.foodres.2019.108582","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2019","pubmed_entrez_date":"2019-11-17","pubmed_publication_date":"12 2019","terms_by_termid":{},"title":"Yeast diversity investigation of Vitis davidii Föex during spontaneous fermentations using culture-dependent and high-throughput sequencing approaches.","uniquename":"PMID:31732056"}


id: PMID:29191091
data:
  {"abstract":"Coenzyme Q (CoQ) is essential for mitochondrial respiration and as a cofactor for sulfide quinone reductase. Schizosaccharomyces pombe produces a human-type CoQ 10 . Here, we analyzed CoQ in other fission yeast species. S. cryophilus and S. octosporus produce CoQ 9 . S. japonicus produces low levels of CoQ 10 , although all necessary genes for CoQ synthesis have been identified in its genome. We expressed three genes (dps1, dlp1, and ppt1) for CoQ synthesis from S. japonicus in the corresponding S. pombe mutants, and confirmed that they were functional. S. japonicus had very low levels of oxygen consumption and was essentially respiration defective, probably due to mitochondrial dysfunction. S. japonicus grows well on minimal medium during anaerobic culture, indicating that it acquires sufficient energy by fermentation. S. japonicus produces comparable levels of ethanol under both normal and elevated temperature (42 °C) conditions, at which S. pombe is not able to grow.","alleles_by_uniquename":{},"annotation_curators":[{"annotation_count":4,"community_curator":true,"file_name":null,"file_type":null,"name":"Makoto Kawamukai","orcid":null},{"annotation_count":3,"community_curator":false,"file_name":null,"file_type":null,"name":"Val Wood","orcid":"0000-0001-6330-7526"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-15","authors":"Kaino T, Tonoko K, Mochizuki S, Takashima Y, Kawamukai M","authors_abbrev":"Kaino T et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-09-01 07:29:31","canto_approver_orcid":"0000-0001-6330-7526","canto_curator_name":"Makoto Kawamukai","canto_curator_role":"community","canto_first_approved_date":"2021-07-15 11:51:14","canto_session_key":"53ebb2b64b3102f9","canto_session_submitted_date":"2021-07-15 08:22:11","canto_triage_status":"Curatable","citation":"Biosci Biotechnol Biochem 2018 Jun;82(6):1031-1042","cv_annotations":{"biological_process":[{"annotations":[115577,115578],"is_not":false,"summary":null,"term":"GO:0006744"},{"annotations":[115576],"is_not":false,"summary":null,"term":"GO:0006743"}],"molecular_function":[{"annotations":[115574,115575],"is_not":false,"summary":null,"term":"GO:0097269"}]},"doi":"10.1080/09168451.2017.1401914","gene_count":3,"genes_by_uniquename":{"SJAG_01865":null,"SJAG_04568":null,"SJAG_06603":null},"genetic_interactions":[[{"gene_a_uniquename":"SJAG_01865","gene_b_uniquename":"SJAG_04568","interaction_type":"Synthetic Rescue"},[{"reference_uniquename":"PMID:29191091","throughput":"low"}]]],"genotypes_by_uniquename":{},"ltp_gene_count":3,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2018","pubmed_entrez_date":"2017-12-02","pubmed_publication_date":"Jun 2018","terms_by_termid":{"GO:0006743":null,"GO:0006744":null,"GO:0097269":null},"title":"Schizosaccharomyces japonicus has low levels of CoQ 10  synthesis, respiration deficiency, and efficient ethanol production.","uniquename":"PMID:29191091"}


id: PMID:35049972
data:
  {"abstract":"The survival of eukaryotic organisms during environmental changes is largely dependent on the adaptive responses elicited by signal transduction cascades, including those regulated by the Mitogen-Activated Protein Kinase (MAPK) pathways. The Cell Integrity Pathway (CIP), one of the three MAPK pathways found in the simple eukaryote fission of yeast  Schizosaccharomyces pombe , shows strong homology with mammalian Extracellular signal-Regulated Kinases (ERKs). Remarkably, studies over the last few decades have gradually positioned the CIP as a multi-faceted pathway that impacts multiple functional aspects of the fission yeast life cycle during unperturbed growth and in response to stress. They include the control of mRNA-stability through RNA binding proteins, regulation of calcium homeostasis, and modulation of cell wall integrity and cytokinesis. Moreover, distinct evidence has disclosed the existence of sophisticated interplay between the CIP and other environmentally regulated pathways, including Stress-Activated MAP Kinase signaling (SAPK) and the Target of Rapamycin (TOR). In this review we present a current overview of the organization and underlying regulatory mechanisms of the CIP in  S. pombe , describe its most prominent functions, and discuss possible targets of and roles for this pathway. The evolutionary conservation of CIP signaling in the dimorphic fission yeast  S. japonicus  will also be addressed.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Cansado J, Soto T, Franco A, Vicente-Soler J, Madrid M","authors_abbrev":"Cansado J et al.","canto_added_date":"2023-05-04 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Review or comment","citation":"J Fungi (Basel) 2021 Dec 30;8(1)","cv_annotations":{},"doi":"10.3390/jof8010032","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2022-01-20","pubmed_publication_date":"30 Dec 2021","terms_by_termid":{},"title":"The Fission Yeast Cell Integrity Pathway: A Functional Hub for Cell Survival upon Stress and Beyond.","uniquename":"PMID:35049972"}


id: PMID:9884240
data:
  {"abstract":"Fission yeast cells grow by extension at the ends (poles) and divide by transverse fission. It has previously been reported that Schizosaccharomyces japonicus var. japonicus can switch to unipolar, filamentous growth. Here it is shown that the yeast-to-mycelium transition is a gradual process involving a changeover to unipolar growth associated with asymmetric divisions, the development of large polarly located vacuoles, the modifications of the actin and microtubular cytoskeleton and the repression of cell separation after division. High concentrations of glucose in the medium or supplementation of the medium with caffeine or cAMP support the bipolar yeast phase, inhibit the transition to the mycelial phase and induce the conversion of hyphae to yeasts. These effects suggest that cAMP may be involved in the regulation of dimorphism. Temperatures below 18 degrees C or over 35 degrees C are restrictive for the mycelial phase and provoke a return to yeast phase.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-10-07","authors":"Sipiczki M, Takeo K, Grallert A","authors_abbrev":"Sipiczki M et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-10-07 12:31:51","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-10-07 12:31:51","canto_session_key":"5ac54d09f220d215","canto_session_submitted_date":"2021-09-30 09:01:47","canto_triage_status":"Curatable","citation":"Microbiology (Reading) 1998 Dec;144 ( Pt 12):3475-3485","cv_annotations":{},"doi":"10.1099/00221287-144-12-3475","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1998","pubmed_entrez_date":"1999-01-12","pubmed_publication_date":"Dec 1998","terms_by_termid":{},"title":"Growth polarity transitions in a dimorphic fission yeast.","uniquename":"PMID:9884240"}


id: PMID:28228545
data:
  {"abstract":"Inactivation of retrotransposons is accompanied by the emergence of centromere-binding protein-B (CENPB) in  Schizosaccharomyces , as well as in metazoans. The RNA interference (RNAi)-induced transcriptional silencing (RITS) complex, comprising chromodomain protein-1 (Chp1), Tas3 (protein with unknown function), and Argonaute (Ago1), plays an important role in RNAi-mediated heterochromatinization. We find that whereas the Ago1 subunit of the RITS complex is highly conserved, Tas3 is lost and Chp1 is truncated in  Schizosaccharomyces cryophilus  and  Schizosaccharomyces octosporus  We show that truncated Chp1 loses the property of heterochromatin localization and silencing when transformed in  Schizosaccharomyces pombe  Furthermore, multiple copies of CENPB, related to  Tc1/mariner and Tc5  transposons, occur in all  Schizosaccharomyces  species, as well as in humans, but with loss of transposase function (except  Schizosaccharomyces japonicus ). We propose that acquisition of  Tc1/mariner and Tc5  elements by horizontal transfer in  S. pombe  (and humans) is accompanied by alteration of their function from a transposase/endonuclease to a heterochromatin protein, designed to suppress transposon expression and recombination. The resulting redundancy of RITS may have eased the selection pressure, resulting in progressive loss or truncation of  tas3  and  chp1  genes in  S. octosporus  and  S. cryophilus  and triggered similar evolutionary dynamics in the metazoan orthologues.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Upadhyay U, Srivastava S, Khatri I, Nanda JS, Subramanian S, Arora A, Singh J","authors_abbrev":"Upadhyay U et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Phylogeny and evolutionary studies","citation":"Mol Biol Cell 2017 Apr 15;28(8):1132-1146","cv_annotations":{},"doi":"10.1091/mbc.E16-07-0485","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2017","pubmed_entrez_date":"2017-02-24","pubmed_publication_date":"15 Apr 2017","terms_by_termid":{},"title":"Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB.","uniquename":"PMID:28228545"}


id: PMID:34353908
data:
  {"abstract":"Biosynthesis of sterols, which are key constituents of canonical eukaryotic membranes, requires molecular oxygen. Anaerobic protists and deep-branching anaerobic fungi are the only eukaryotes in which a mechanism for sterol-independent growth has been elucidated. In these organisms, tetrahymanol, formed through oxygen-independent cyclization of squalene by a squalene-tetrahymanol cyclase, acts as a sterol surrogate. This study confirms an early report [C. J. E. A. Bulder,  Antonie Van Leeuwenhoek , 37, 353-358 (1971)] that  Schizosaccharomyces japonicus  is exceptional among yeasts in growing anaerobically on synthetic media lacking sterols and unsaturated fatty acids. Mass spectrometry of lipid fractions of anaerobically grown  Sch. japonicus  showed the presence of hopanoids, a class of cyclic triterpenoids not previously detected in yeasts, including hop-22(29)-ene, hop-17(21)-ene, hop-21(22)-ene, and hopan-22-ol. A putative gene in  Sch. japonicus  showed high similarity to bacterial squalene-hopene cyclase (SHC) genes and in particular to those of  Acetobacter  species. No orthologs of the putative  Sch. japonicus  SHC were found in other yeast species. Expression of the  Sch. japonicus  SHC gene ( Sjshc1 ) in  Saccharomyces cerevisiae  enabled hopanoid synthesis and stimulated anaerobic growth in sterol-free media, thus indicating that one or more of the hopanoids produced by SjShc1 could at least partially replace sterols. Use of hopanoids as sterol surrogates represents a previously unknown adaptation of eukaryotic cells to anaerobic growth. The fast anaerobic growth of  Sch. japonicus  in sterol-free media is an interesting trait for developing robust fungal cell factories for application in anaerobic industrial processes.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Bouwknegt J, Wiersma SJ, Ortiz-Merino RA, Doornenbal ESR, Buitenhuis P, Giera M, Müller C, Pronk JT","authors_abbrev":"Bouwknegt J et al.","canto_added_date":"2023-05-04 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Proc Natl Acad Sci U S A 2021 Aug 10;118(32)","cv_annotations":{},"doi":"10.1073/pnas.2105225118","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2021-08-06","pubmed_publication_date":"10 Aug 2021","terms_by_termid":{},"title":"A squalene-hopene cyclase in  Schizosaccharomyces japonicus  represents a eukaryotic adaptation to sterol-limited anaerobic environments.","uniquename":"PMID:34353908"}


id: GO_REF:0000047
data:
  {"abstract":"This describes a method for supplying a NOT-qualified, IKR-evidenced GO annotation to a gene product, when general sequence homology considerations would suggest a function or location, or a role in a biological process, but where a curator has determined that the absence of key sequence residues, known to be required for an expected activity or location, indicating the gene product is unlikely to be able to carry out the implied activity, involvement in a process or cellular component location. This reference should only be used used when an IKR-evidenced annotation is made based on curator judgement from manually reviewing the sequence of the gene product and where no publication can be found to support the curators conclusion. It is preferable to cite a peer-reviewed publication (such as a PubMed identifier) for IKR-evidenced annotations whenever possible. Curators will have carefully reviewed the sequence of the annotated protein, and established that the key residues known to be required for an expected activity or location are not present. Inclusion of an identifier in the 'with/from' field, that highlights to the user the lacking residues(e.g. an alignment, domain or rule identifier) is absolutely required when annotating to IKR with this GO_REF. Documentation on the GOC website provides more details on the <a href = \"http://www.geneontology.org/GO.evidence.shtml#ikr\">correct use of the IKR evidence code</a>.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Gene Ontology annotation based on absence of key sequence residues.","uniquename":"GO_REF:0000047"}


id: GO_REF:0000115
data:
  {"abstract":"Rfam (http://rfam.org, PMID:29112718) is a database of non-coding RNA families which are manually","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"RNAcentral (1). (1) European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridgeshire, United Kingdom","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Automatic Gene Ontology annotation of non-coding RNA sequences through association of Rfam records with GO terms","uniquename":"GO_REF:0000115"}


id: PMID:27734801
data:
  {"abstract":"Many eukaryotes assemble a ring-shaped actomyosin network that contracts to drive cytokinesis. Unlike actomyosin in sarcomeres, which cycles through contraction and relaxation, the cytokinetic ring disassembles during contraction through an unknown mechanism. Here we find in  Schizosaccharomyces japonicus  and  Schizosaccharomyces pombe  that, during actomyosin ring contraction, actin filaments associated with actomyosin rings are expelled as micron-scale bundles containing multiple actomyosin ring proteins. Using functional isolated actomyosin rings we show that expulsion of actin bundles does not require continuous presence of cytoplasm. Strikingly, mechanical compression of actomyosin rings results in expulsion of bundles predominantly at regions of high curvature. Our work unprecedentedly reveals that the increased curvature of the ring itself promotes its disassembly. It is likely that such a curvature-induced mechanism may operate in disassembly of other contractile networks.","alleles_by_uniquename":{},"annotation_curators":[{"annotation_count":2,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Huang J, Chew TG, Gu Y, Palani S, Kamnev A, Martin DS, Carter NJ, Cross RA, Oliferenko S, Balasubramanian MK","authors_abbrev":"Huang J et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-07-09 15:10:46","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 15:10:46","canto_session_key":"f47401f00ac444e0","canto_session_submitted_date":"2021-07-09 15:10:39","canto_triage_status":"Curatable","citation":"Elife 2016 10 13;5","cv_annotations":{"cellular_component":[{"annotations":[115645],"is_not":false,"summary":null,"term":"GO:0032432"},{"annotations":[115644],"is_not":false,"summary":null,"term":"GO:0005826"}]},"doi":"10.7554/eLife.21383","gene_count":1,"genes_by_uniquename":{"SJAG_04887":null},"genotypes_by_uniquename":{},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2016","pubmed_entrez_date":"2016-10-14","pubmed_publication_date":"13 10 2016","terms_by_termid":{"GO:0005826":null,"GO:0032432":null},"title":"Curvature-induced expulsion of actomyosin bundles during cytokinetic ring contraction.","uniquename":"PMID:27734801"}


id: PMID:37684233
data:
  {"abstract":"Cellular metabolism relies on just a few redox cofactors. Selective compartmentalization may prevent competition between metabolic reactions requiring the same cofactor. Is such compartmentalization necessary for optimal cell function? Is there an optimal compartment size? Here we probe these fundamental questions using peroxisomal compartmentalization of the last steps of lysine and histidine biosynthesis in the fission yeast Schizosaccharomyces japonicus. We show that compartmentalization of these NAD +  dependent reactions together with a dedicated NADH/NAD +  recycling enzyme supports optimal growth when an increased demand for anabolic reactions taxes cellular redox balance. In turn, compartmentalization constrains the size of individual organelles, with larger peroxisomes accumulating all the required enzymes but unable to support both biosynthetic reactions at the same time. Our reengineering and physiological experiments indicate that compartmentalized biosynthetic reactions are sensitive to the size of the compartment, likely due to scaling-dependent changes within the system, such as enzyme packing density.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Gu Y, Alam S, Oliferenko S","authors_abbrev":"Gu Y et al.","canto_added_date":"2023-09-10 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Nat Commun 2023 Sep 08;14(1):5544","cv_annotations":{},"doi":"10.1038/s41467-023-41347-x","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2023","pubmed_entrez_date":"2023-09-08","pubmed_publication_date":"08 Sep 2023","terms_by_termid":{},"title":"Peroxisomal compartmentalization of amino acid biosynthesis reactions imposes an upper limit on compartment size.","uniquename":"PMID:37684233"}


id: GO_REF:0000061
data:
  {"abstract":"We have created a standard template for classes describing molecular function involved in other biological processes. The underlying equivalence axiom template is \"P and 'part_of' some W\", where P is a molecular function and W is a biological processes.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of a molecular function involved in a biological process in the Gene Ontology","uniquename":"GO_REF:0000061"}


id: GO_REF:0000066
data:
  {"abstract":"We have created a standard template for classes describing the transport of a chemical entity (ChEBI) as a molecular function. The underlying equivalence axiom template is \"GO:0005215 and 'transports or maintains localization of' some X\", where X is a chemical entity (CHEBI:24431). The approach to combine GO and ChEBI has been described in the following publication: PMID:23895341.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of transport of a chemical entity as molecular function in the Gene Ontology","uniquename":"GO_REF:0000066"}


id: PMID:32243490
data:
  {"abstract":"The nuclear envelope (NE) undergoes dynamic remodeling to maintain NE integrity, a process involving the inner nuclear membrane protein LEM2 recruiting CHMP7/Cmp7 and then ESCRT-III. However, prior work has hinted at CHMP7/ESCRT-independent mechanisms. To identify such mechanisms, we studied NE assembly in Schizosaccharomyces japonicus, a fission yeast that undergoes partial mitotic NE breakdown and reassembly. S. japonicus cells lacking Cmp7 have compromised NE sealing after mitosis but are viable. A genetic screen identified mutations that promote NE integrity in cmp7Δ cells. Unexpectedly, loss of Lem2 or its interacting partner Nur1 suppressed cmp7Δ defects. In the absence of Cmp7, Lem2 formed aggregates that appear to interfere with ESCRT-independent NE sealing. A gain-of-function mutation implicated a membrane and ESCRT-III regulator, Alx1, in this alternate pathway. Additional results suggest a potentially general role for unsaturated fatty acids in NE integrity. These findings establish the existence of mechanisms for NE sealing independent of the canonical ESCRT pathway.","alleles_by_uniquename":{"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_03891:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03891","name":"alx1delta","uniquename":"SJAG_03891:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_curators":[{"annotation_count":21,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"},{"annotation_count":4,"community_curator":false,"file_name":null,"file_type":null,"name":"Val Wood","orcid":"0000-0001-6330-7526"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-09","authors":"Lee IJ, Stokasimov E, Dempsey N, Varberg JM, Jacob E, Jaspersen SL, Pellman D","authors_abbrev":"Lee IJ et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-07-14 11:10:55","canto_approver_orcid":"0000-0001-6330-7526","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-09 15:55:25","canto_session_key":"e134ba05c345c3f5","canto_session_submitted_date":"2021-07-09 15:55:19","canto_triage_status":"Curatable","citation":"J Cell Biol 2020 06 01;219(6)","cv_annotations":{"biological_process":[{"annotations":[115565,115566,115567,115568],"is_not":false,"summary":null,"term":"GO:0007084"}],"cellular_component":[{"annotations":[115564],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[115550,115552,115562],"is_not":false,"summary":null,"term":"GO:0044732"},{"annotations":[115551,115553,115561],"is_not":false,"summary":null,"term":"GO:0005635"}],"single_locus_phenotype":[{"annotations":[115554],"is_not":false,"summary":null,"term":"FYPO:0001375"},{"annotations":[115559],"is_not":false,"summary":null,"term":"FYPO:0000080"},{"annotations":[115555,115556,115563],"is_not":false,"summary":null,"term":"FYPO:0007772"},{"annotations":[115560],"is_not":false,"summary":null,"term":"FYPO:0000714"},{"annotations":[115557,115558],"is_not":false,"summary":null,"term":"FYPO:0001234"}]},"doi":"10.1083/jcb.201908232","gene_count":6,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01242":null,"SJAG_01745":null,"SJAG_03891":null,"SJAG_03943":null,"SJAG_05207":null},"genetic_interactions":[[{"gene_a_uniquename":"SJAG_01242","gene_b_uniquename":"SJAG_01745","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_01242","gene_b_uniquename":"SJAG_03891","interaction_type":"Phenotypic Enhancement"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_05207","gene_b_uniquename":"SJAG_03943","interaction_type":"Dosage Rescue"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_05207","gene_b_uniquename":"SJAG_01745","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_01745","gene_b_uniquename":"SJAG_01050","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]],[{"gene_a_uniquename":"SJAG_01242","gene_b_uniquename":"SJAG_01050","interaction_type":"Phenotypic Suppression"},[{"reference_uniquename":"PMID:32243490","throughput":"low"}]]],"genotypes_by_uniquename":{"alx1delta":{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]}},"ltp_gene_count":6,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2020","pubmed_entrez_date":"2020-04-04","pubmed_publication_date":"01 06 2020","terms_by_termid":{"FYECO:0000006":null,"FYPO:0000080":null,"FYPO:0000714":null,"FYPO:0001234":null,"FYPO:0001375":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000003":null,"GO:0005635":null,"GO:0005783":null,"GO:0007084":null,"GO:0044732":null},"title":"Factors promoting nuclear envelope assembly independent of the canonical ESCRT pathway.","uniquename":"PMID:32243490"}


id: PMID:23150598
data:
  {"abstract":"A key question in developmental biology addresses the mechanism of asymmetric cell division. Asymmetry is crucial for generating cellular diversity required for development in multicellular organisms. As one of the potential mechanisms, chromosomally borne epigenetic difference between sister cells that changes mating/cell type has been demonstrated only in the Schizosaccharomyces pombe fission yeast. For technical reasons, it is nearly impossible to determine the existence of such a mechanism operating during embryonic development of multicellular organisms. Our work addresses whether such an epigenetic mechanism causes asymmetric cell division in the recently sequenced fission yeast, S. japonicus (with 36% GC content), which is highly diverged from the well-studied S. pombe species (with 44% GC content). We find that the genomic location and DNA sequences of the mating-type loci of S. japonicus differ vastly from those of the S. pombe species. Remarkably however, similar to S. pombe, the S. japonicus cells switch cell/mating type after undergoing two consecutive cycles of asymmetric cell divisions: only one among four \"granddaughter\" cells switches. The DNA-strand-specific epigenetic imprint at the mating-type locus1 initiates the recombination event, which is required for cellular differentiation. Therefore the S. pombe and S. japonicus mating systems provide the first two examples in which the intrinsic chirality of double helical structure of DNA forms the primary determinant of asymmetric cell division. Our results show that this unique strand-specific imprinting/segregation epigenetic mechanism for asymmetric cell division is evolutionary conserved. Motivated by these findings, we speculate that DNA-strand-specific epigenetic mechanisms might have evolved to dictate asymmetric cell division in diploid, higher eukaryotes as well.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Yu C, Bonaduce MJ, Klar AJ","authors_abbrev":"Yu C et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Genetics 2013 Jan;193(1):85-94","cv_annotations":{},"doi":"10.1534/genetics.112.146233","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2013","pubmed_entrez_date":"2012-11-15","pubmed_publication_date":"Jan 2013","terms_by_termid":{},"title":"Defining the epigenetic mechanism of asymmetric cell division of Schizosaccharomyces japonicus yeast.","uniquename":"PMID:23150598"}


id: GO_REF:0000105
data:
  {"abstract":"Gene Ontology annotation based on predicted cytoplasmic tRNAs using tRNAscan-SE analysis (doi: 10.1093/nar/25.5.0955) of the Drosophila melanogaster genome (2002). Annotations have been reviewed by FlyBase (2015) and found to be consistent when compared with the most recent tRNAscan-SE analysis of the genome (http://gtrnadb.ucsc.edu/genomes/eukaryota/Dmela6/).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"FlyBase","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Gene Ontology annotation of transfer RNAs based on tRNAscan-SE analysis of the Drosophila melanogaster genome (2002).","uniquename":"GO_REF:0000105"}


id: PMID:23786411
data:
  {"abstract":"Three types of mitosis, which are open, closed or semi-open mitosis, function in eukaryotic cells, respectively. The open mitosis involves breakage of the nuclear envelope before nuclear division, whereas the closed mitosis proceeds with an intact nuclear envelope. To understand the mechanism and significance of three types of mitotic division in eukaryotes, we investigated the process of semi-open mitosis, in which the nuclear envelope is only partially broken, in the fission yeast Schizosaccharomyces japonicus. In anaphase-promoting complex/cyclosome (APC/C) mutants of Sz. japonicus, the nuclear envelope remained relatively intact during anaphase, resulting in impaired semi-open mitosis. As a suppressor of apc2 mutant, a mutation of Oar2, which was a 3-oxoacyl-[acyl carrier protein] reductase, was obtained. The level of the Oar2, which had two destruction-box motifs recognized by APC/C, was increased in APC/C mutants. Furthermore, the defective semi-open mitosis observed in an apc2 mutant was restored by mutated oar2+. Based on these findings, we propose that APC/C regulates the dynamics of the nuclear envelope through degradation of Oar2 dependent on APC/C during the metaphase-to-anaphase transition of semi-open mitosis in Sz. japonicus.","alleles_by_uniquename":{"SJAG_01946:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01946","name":"cem1delta","uniquename":"SJAG_01946:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03198:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03198","name":"oar2delta","uniquename":"SJAG_03198:allele-1"},"SJAG_03198:allele-2":{"allele_type":"amino_acid_mutation","description":"Y189D cold sensitive","gene_uniquename":"SJAG_03198","name":"oar2-51","uniquename":"SJAG_03198:allele-2"},"SJAG_03198:allele-3":{"allele_type":"amino_acid_mutation","description":"R72A,L75A,R106A,L109A","gene_uniquename":"SJAG_03198","name":"oar2-dm12","synonyms":[{"name":"destruction box mutations","reference":"PMID:23786411","type":"exact"}],"uniquename":"SJAG_03198:allele-3"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_curators":[{"annotation_count":22,"community_curator":true,"file_name":null,"file_type":null,"name":"Sho Okamoto","orcid":null}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-11-21","authors":"Aoki K, Shiwa Y, Takada H, Yoshikawa H, Niki H","authors_abbrev":"Aoki K et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2022-11-21 18:57:14","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Sho Okamoto","canto_curator_role":"community","canto_first_approved_date":"2022-11-21 18:57:14","canto_session_key":"a0c3e1394f326db9","canto_session_submitted_date":"2022-11-21 18:57:00","canto_triage_status":"Curatable","citation":"Genes Cells 2013 Sep;18(9):733-52","cv_annotations":{"cellular_component":[{"annotations":[115276],"is_not":false,"summary":null,"term":"GO:0005730"}],"multi_locus_phenotype":[{"annotations":[115290,115291,115292,115294],"is_not":false,"summary":null,"term":"FYPO:0000674"}],"single_locus_phenotype":[{"annotations":[115277,115278,115279,115293],"is_not":false,"summary":null,"term":"FYPO:0000080"},{"annotations":[115286,115287,115288],"is_not":false,"summary":null,"term":"FYPO:0000618"},{"annotations":[115295,115296,115297],"is_not":false,"summary":null,"term":"FYPO:0001327"},{"annotations":[115283,115284,115285],"is_not":false,"summary":null,"term":"FYPO:0001387"},{"annotations":[115280,115281,115282],"is_not":false,"summary":null,"term":"FYPO:0000324"},{"annotations":[115289],"is_not":false,"summary":null,"term":"FYPO:0004683"}]},"doi":"10.1111/gtc.12072","gene_count":6,"genes_by_uniquename":{"SJAG_00259":null,"SJAG_01946":null,"SJAG_01956":null,"SJAG_03198":null,"SJAG_03351":null,"SJAG_03575":null},"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta":{"display_name":"apc2-361(E548K ts) cem1delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts) oar2-51(Y189D cold sensitive)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Not assayed or wild type"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression":{"display_name":"apc2-361(E548K ts) oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta":{"display_name":"apc2-361(E548K ts) oar2delta","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type__oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]},"cem1delta":{"display_name":"cem1delta","display_uniquename":"cem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01946:allele-1","expression":"Null"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]},"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}]},"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-dm12(R72A,L75A,R106A,L109A aa)[Overexpression]","display_uniquename":"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-3","expression":"Overexpression"}]}]},"oar2delta":{"display_name":"oar2delta","display_uniquename":"oar2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-1","expression":"Null"}]}]}},"ltp_gene_count":6,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2013","pubmed_entrez_date":"2013-06-22","pubmed_publication_date":"Sep 2013","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000006":null,"FYECO:0000137":null,"FYPO:0000080":null,"FYPO:0000324":null,"FYPO:0000618":null,"FYPO:0000674":null,"FYPO:0001327":null,"FYPO:0001387":null,"FYPO:0004683":null,"FYPO_EXT:0000001":null,"GO:0005730":null},"title":"Regulation of nuclear envelope dynamics via APC/C is necessary for the progression of semi-open mitosis in Schizosaccharomyces japonicus.","uniquename":"PMID:23786411"}


id: GO_REF:0000063
data:
  {"abstract":"We have created a standard template for classes describing processes regulated by other regulating processes. The underlying equivalence axiom template is \"R and 'results_in' some P\", where R is a biological process and P is a regulation of biological process subclass.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of processes regulated by other regulating processes in the Gene Ontology","uniquename":"GO_REF:0000063"}


id: PMID:27678009
data:
  {"abstract":"The cAMP cascade plays an important role in several biological processes. Thus, study of its molecular details can contribute to a better understanding of these processes, treatment of diseases, or even finding antifungal drug targets. To gain further information about the PKA pathway, and its evolutionarily conserved and species-specific features, the central regulator pka1 gene, which encodes the cAMP-dependent protein kinase catalytic subunit, was studied in the less known haplontic, dimorphic fission yeast Schizosaccharomyces japonicus. Namely, this species belongs to a highly divergent phylogenetic branch of fungi. Furthermore, S. japonicus had only a single copy pka1 gene in contrast to the budding yeasts. Therefore, the pka1 deleted mutant was created, whose RNA sequencing and phenotypic studies revealed that the Pka1 regulated at least 373 genes, among them further kinases, phosphatases and transcriptional regulators. It regulated elongation of hyphae, cell size, aging and stress response. Furthermore, half of the pka1 target genes seemed to be conserved in Schizosaccharomyces pombe and S. japonicus. However, there were oppositely regulated genes in the two closely related species. The target genes suggest that this single gene must be able to fulfill all the functions of TPK1-3 of Saccharomyces cerevisiae. Thus, our results shed light on certain similarities and differences of the PKA pathway of S. japonicus compared to the budding yeasts and confirmed the multifunctionality of the pka1 gene, but further experiments are needed to prove its involvement in the metabolic processes and transport.","alleles_by_uniquename":{"SJAG_04312:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04312","name":"pka1delta","uniquename":"SJAG_04312:allele-1"}},"annotation_curators":[{"annotation_count":6,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-07","authors":"Papp L, Sipiczki M, Miklós I","authors_abbrev":"Papp L et al.","canto_added_date":"2021-05-10 08:46:37","canto_annotation_status":"APPROVED","canto_approved_date":"2021-07-07 12:57:27","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-07 12:57:27","canto_session_key":"9dc3302039d46818","canto_session_submitted_date":"2021-07-07 12:56:39","canto_triage_status":"Curatable","citation":"Curr Genet 2017 Jun;63(3):487-497","cv_annotations":{"single_locus_phenotype":[{"annotations":[115543],"is_not":false,"summary":null,"term":"FYPO:0007773"},{"annotations":[115542],"is_not":false,"summary":null,"term":"FYPO:0001122"},{"annotations":[115544],"is_not":false,"summary":null,"term":"FYPO:0000245"},{"annotations":[115546],"is_not":false,"summary":null,"term":"FYPO:0000097"},{"annotations":[115545],"is_not":false,"summary":null,"term":"FYPO:0000087"},{"annotations":[115547],"is_not":false,"summary":null,"term":"FYPO:0001214"}]},"doi":"10.1007/s00294-016-0651-x","gene_count":1,"genes_by_uniquename":{"SJAG_04312":null},"genotypes_by_uniquename":{"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]}},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2017","pubmed_entrez_date":"2016-09-29","pubmed_publication_date":"Jun 2017","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000102":null,"FYECO:0000137":null,"FYPO:0000087":null,"FYPO:0000097":null,"FYPO:0000245":null,"FYPO:0001122":null,"FYPO:0001214":null,"FYPO:0007773":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null},"title":"Expression pattern and phenotypic characterization of the mutant strain reveals target genes and processes regulated by pka1 in the dimorphic fission yeast Schizosaccharomyces japonicus.","uniquename":"PMID:27678009"}


id: PMID:21802294
data:
  {"abstract":"Eukaryotes segregate chromosomes in \"open\" or \"closed\" mitosis, depending on whether their nuclear envelopes (NEs) break down or remain intact. Here we show that the control of the nuclear surface area may determine the choice between these two modes. The dividing nucleus does not expand its surface in the fission yeast Schizosaccharomyces japonicus, confining the mitotic spindle and causing it to buckle. The NE ruptures in anaphase, releasing the compressive stress and allowing chromosome segregation. Blocking the NE expansion in the related species Schizosaccharomyces pombe that undergoes closed mitosis induces spindle buckling and collapse in the absence of an intrinsic NE rupture mechanism. We propose that scaling considerations could have shaped the evolution of eukaryotic mitosis by necessitating either nuclear surface expansion or the NE breakdown.","alleles_by_uniquename":{"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"}},"annotation_curators":[{"annotation_count":16,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"},{"annotation_count":1,"community_curator":false,"file_name":null,"file_type":null,"name":"Val Wood","orcid":"0000-0001-6330-7526"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-07-05","authors":"Yam C, He Y, Zhang D, Chiam KH, Oliferenko S","authors_abbrev":"Yam C et al.","canto_added_date":"2021-05-10 02:38:30","canto_annotation_status":"APPROVED","canto_approved_date":"2021-09-01 07:44:20","canto_approver_orcid":"0000-0001-6330-7526","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-07-05 11:58:24","canto_session_key":"ec486c9b0898d3c4","canto_session_submitted_date":"2021-07-05 12:18:55","canto_triage_status":"Curatable","citation":"Curr Biol 2011 Aug 09;21(15):1314-9","cv_annotations":{"biological_process":[{"annotations":[115387],"is_not":false,"summary":null,"term":"GO:0101024"}],"cellular_component":[{"annotations":[115376],"is_not":false,"summary":null,"term":"GO:0000785"},{"annotations":[115380,115381],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[115382],"is_not":false,"summary":null,"term":"GO:0098826"},{"annotations":[115375],"is_not":false,"summary":null,"term":"GO:0000776"},{"annotations":[115372],"is_not":false,"summary":null,"term":"GO:0005874"},{"annotations":[115377,115378,115379,115383],"is_not":false,"summary":null,"term":"GO:0005643"},{"annotations":[115373,115374],"is_not":false,"summary":null,"term":"GO:0005730"}],"single_locus_phenotype":[{"annotations":[115385],"is_not":false,"summary":null,"term":"FYPO:0003779"},{"annotations":[115384],"is_not":false,"summary":null,"term":"FYPO:0004318"},{"annotations":[115386],"is_not":false,"summary":null,"term":"FYPO:0007772"}]},"doi":"10.1016/j.cub.2011.06.052","gene_count":13,"genes_by_uniquename":{"SJAG_00175":null,"SJAG_00471":null,"SJAG_00684":null,"SJAG_00943":null,"SJAG_01006":null,"SJAG_01330":null,"SJAG_01374":null,"SJAG_01460":null,"SJAG_01745":null,"SJAG_02509":null,"SJAG_02830":null,"SJAG_03299":null,"SJAG_03603":null},"genotypes_by_uniquename":{"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]}},"ltp_gene_count":13,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2011","pubmed_entrez_date":"2011-08-02","pubmed_publication_date":"09 Aug 2011","terms_by_termid":{"FYECO:0000162":null,"FYPO:0003779":null,"FYPO:0004318":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"GO:0000776":null,"GO:0000785":null,"GO:0005643":null,"GO:0005730":null,"GO:0005783":null,"GO:0005874":null,"GO:0098826":null,"GO:0101024":null},"title":"Divergent strategies for controlling the nuclear membrane satisfy geometric constraints during nuclear division.","uniquename":"PMID:21802294"}


id: PMID:34427722
data:
  {"abstract":"Fungal pathogens, from phytopathogenic fungus to human pathogens, are able to alternate between the yeast-like form and filamentous forms. This morphological transition (dimorphism) is in close connection with their pathogenic lifestyles and with their responses to changing environmental conditions. The mechanisms governing these morphogenetic conversions are still not fully understood. Therefore, we studied the filamentous growth of the less-known, non-pathogenic dimorphic fission yeast, S. japonicus, which belongs to an ancient and early evolved branch of the Ascomycota. Its RNA sequencing revealed that several hundred genes were up- or down-regulated in the hyphae compared to the yeast-phase cells. These genes belonged to different GO categories, confirming that mycelial growth is a rather complex process. The genes of transport- and metabolic processes appeared especially in high numbers among them. High expression of genes involved in glycolysis and ethanol production was found in the hyphae, while other results pointed to the regulatory role of the protein kinase A (PKA) pathway. The homologues of 49 S. japonicus filament-associated genes were found by sequence alignments also in seven distantly related dimorphic and filamentous species. The comparative genomic analyses between S. japonicus and the closely related but non-dimorphic S. pombe shed some light on the differences in their genomes. All these data can contribute to a better understanding of hyphal growth and those genomic rearrangements that underlie it.","alleles_by_uniquename":{},"annotation_curators":[{"annotation_count":2,"community_curator":true,"file_name":null,"file_type":null,"name":"Ida Miklos","orcid":"0000-0002-7074-4019"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-10-06","authors":"Papp LA, Ács-Szabó L, Batta G, Miklós I","authors_abbrev":"Papp LA et al.","canto_added_date":"2021-09-29 13:11:40","canto_annotation_status":"APPROVED","canto_approved_date":"2021-10-06 13:34:09","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Ida Miklos","canto_curator_role":"community","canto_first_approved_date":"2021-10-06 13:34:09","canto_session_key":"acb5c82405799ef1","canto_session_submitted_date":"2021-09-29 13:38:18","canto_triage_status":"Curatable","citation":"Curr Genet 2021 Dec;67(6):953-968","cv_annotations":{"biological_process":[{"annotations":[115754,115755],"is_not":false,"summary":null,"term":"GO:0030448"}]},"doi":"10.1007/s00294-021-01206-y","gene_count":2,"genes_by_uniquename":{"SJAG_00124":null,"SJAG_04312":null},"genotypes_by_uniquename":{},"ltp_gene_count":2,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2021-08-24","pubmed_publication_date":"Dec 2021","terms_by_termid":{"GO:0030448":null},"title":"Molecular and comparative genomic analyses reveal evolutionarily conserved and unique features of the Schizosaccharomyces japonicus mycelial growth and the underlying genomic changes.","uniquename":"PMID:34427722"}


id: PMID:37457408
data:
  {"abstract":"The online version contains supplementary material available at 10.1007/s10068-023-01265-6.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Choi J, Park SY, Park MK, Kim YS, Ahn C, Kim YJ, Park CS","authors_abbrev":"Choi J et al.","canto_added_date":"2023-07-18 00:40:02","canto_curator_role":"JaponicusDB","canto_triage_status":"Biotech","citation":"Food Sci Biotechnol 2023 Sep;32(10):1383-1393","cv_annotations":{},"doi":"10.1007/s10068-023-01265-6","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2023","pubmed_entrez_date":"2023-07-17","pubmed_publication_date":"Sep 2023","terms_by_termid":{},"title":"Application of  Schizosaccharomyces japonicus  in  makgeolli  fermentation and its brewing characteristics.","uniquename":"PMID:37457408"}


id: GO_REF:0000012
data:
  {"abstract":"Pairwise alignments are generated by taking two sequences and aligning them so that the maximum number of amino acids in each protein match, or are similar to, each other. Tools such as BLAST work by comparing a protein-of-interest individually with every protein in a database of known protein sequences and retaining only those matches with a high probability of being significant. Basic BLAST generates local alignments between proteins for regions of high similarity. Other pairwise alignment tools attempt to generate global (full-length) protein alignments. A tool called Blast_Extend_repraze (BER, http://ber.sourceforge.net) has some benefits over basic BLAST. Input into the BER tool includes the underlying DNA sequence for each protein as well as 300 nucleotides upstream and downstream of the predicted boundaries of the protein coding sequence. This allows annotators to see the DNA sequence that underlies the query protein as part of the alignment. In addition, the BER tool is able to look for continuation of regions of similarity through frameshifts and in-frame stop codons.  If such regions are found the alignment is continued. BER searches are done in a two-step process: step one is a BLAST search against a non-redundant protein database, significant BLAST hits are stored in a mini-database for each query protein; step two is a modified Smith-Waterman alignment between the query and the proteins in its mini-database. In order to assess whether a given BER alignment is good enough to assert that the query shares the function of the match protein, one must look at a several factors. First of all, the match protein must itself be experimentally characterized in order to avoid transitive annotation errors. In addition, any residues or secondary structures known to be important for function in the match protein must be conserved in the query. The alignment should be visually inspected to look for any areas of lesser quality that might indicate the two proteins do not share the same function. Although it is impossible to set cutoff values for percent identity and length of match that will apply for every alignment, there are some guidelines. In general at least 40% identity that extends over the full lengths of both proteins is required in order to even consider functional equivalence. However, this percentage is highly dependent on the length and complexity of the proteins. 40% identity between two proteins 500 amino acids long is much more significant that 40% identity between two proteins that are only 100 amino acids long. Therefore, the annotator's experience and knowledge of what is considered significant for the organism and protein family in question is very important. Some sets of proteins are much more highly conserved than others and therefore tolerances for percent identity may have to be adjusted. Finally, the alignment must be considered in the context of what else is known about the query protein and the organism as a whole.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Michelle Gwinn, TIGR curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Pairwise alignment (TIGR)","uniquename":"GO_REF:0000012"}


id: PMID:2226803
data:
  {"abstract":"In the fission yeast Schizosaccharomyces pombe, the enzyme RNAse P copurifies with two RNAs, K1- and K2-RNA, which are identical except for their termini [1] and which are encoded by a single gene [2]. We have undertaken the cloning of the K-RNA genes in related organisms in order to gain comparative structural information. Because the K-RNA sequence is poorly conserved across species, we have cloned the K-RNA genes in the Schizosaccharomyces species S. malidevorans, S. japonicus, S. versatilis, and S. octosporus. Of the 4 species, only S. octosporus contains a K-RNA gene different from that in S. pombe; the gene diverges by 20%. Based on the two sequences, nuclease protection data and computer analysis, we have proposed a secondary structure model for the K-RNA. Northern analysis shows the K-RNA genes in all four Schizosaccharomyces species to be expressed as two RNAs, as in S. pombe.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Zimmerly S, Gamulin V, Burkard U, Söll D","authors_abbrev":"Zimmerly S et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Sequence feature or region","citation":"FEBS Lett 1990 Oct 01;271(1-2):189-93","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1990","pubmed_entrez_date":"1990-10-01","pubmed_publication_date":"01 Oct 1990","terms_by_termid":{},"title":"The RNA component of RNase P in Schizosaccharomyces species.","uniquename":"PMID:2226803"}


id: PMID:7612397
data:
  {"abstract":"The ultrastructure of isolated cell walls of Schizosaccharomyces pombe was studied by electron microscopy after treatment with the following purified enzymes: endo-beta-(1-->3)-glucanase, endo-beta-(-->6)-glucanase, and endo-alpha-(1-->3)-glucanase produced by Bacillus circulans; exo-beta-(1-->3)-glucanase and endo-beta-(1-->3)-glucanase produced by Schizosaccharomyces japonicus var. versatilis. The exo-beta-(1-->3)-glucanase had no detectable effect on the walls, but amorphous wall material was removed by action of the endo-beta-(1-->3)- and endo-beta-(1-->6)-glucanases of B. circulans to reveal a wall component consisting of densely interwoven microfibrils. The fibrils were hydrolyzed by treatment with the Schiz. japonicus endo-beta-(1-->3)-glucanase followed by B. circulans endo-alpha-(1-->3)-glucanase--suggesting that they were composed of -beta-(1-->3)-linked glucan and alpha-(1-->3)-linked glucan. The presence of a fibrillar component in untreated walls was evident after negative staining.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Kopecká M, Fleet GH, Phaff HJ","authors_abbrev":"Kopecká M et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"J Struct Biol 1995 Mar;114(2):140-52","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"1995","pubmed_entrez_date":"1995-03-01","pubmed_publication_date":"Mar 1995","terms_by_termid":{},"title":"Ultrastructure of the cell wall of Schizosaccharomyces pombe following treatment with various glucanases.","uniquename":"PMID:7612397"}


id: PMID:22300943
data:
  {"abstract":"The fission yeasts (Schizosaccharomyces) representing a highly divergent phylogenetic branch of Fungi evolved from filamentous ancestors by gradual transition from mycelial growth to yeast morphology. For the transition, a mechanism had been developed that separates the sister cells after the completion of cytokinesis. Numerous components of the separation mechanism have been characterised in Schizosaccharomycespombe, including the zinc-finger transcription factor Ace2p and the fork-head transcription factor Sep1p. Here we show that both regulators have regions conserved within the genus. The most conserved parts contain the DNA-binding domains whose amino-acid sequences perfectly reflect the phylogenetic positions of the species. The less conserved parts of the proteins contain sequence blocks specific for the whole genus or only for the species propagating predominantly or exclusively as yeasts. Inactivation of either gene in the dimorphic species Schizosaccharomycesjaponicus abolished cell separation in the yeast phase conferring hypha-like morphology but did not change the growth pattern to unipolar and did not cause extensive polar vacuolation characteristic of the true mycelium. Neither mutation affected the mycelial phase, but both mutations hampered the hyphal fragmentation at the mycelium-to-yeast transition. Ace2p(Sj) acts downstream of Sep1p(Sj) and regulates the orthologues of the Ace2p-dependent S.pombe genes agn1(+) (1,3-alpha-glucanase) and eng1(+) (1,3-beta-glucanase) but does not regulate the orthologue of cfh4(+) (chitin synthase regulatory factor). These results and the complementation of the cell separation defects of the ace2(-) and sep1(-) mutations of S.pombe by heterologously expressed ace2(Sj) and sep1(Sj) indicate that the cell separation mechanism is conserved in the Schizosaccharomyces genus.","alleles_by_uniquename":{"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_03143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03143","name":"sep1delta","uniquename":"SJAG_03143:allele-1"}},"annotation_curators":[{"annotation_count":7,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2022-12-09","authors":"Balazs A, Batta G, Miklos I, Acs-Szabo L, Vazquez de Aldana CR, Sipiczki M","authors_abbrev":"Balazs A et al.","canto_added_date":"2022-12-09 17:19:01","canto_annotation_status":"APPROVED","canto_approved_date":"2022-12-09 17:39:12","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2022-12-09 17:39:12","canto_session_key":"f106e12e6366fbad","canto_session_submitted_date":"2022-12-09 17:38:34","canto_triage_status":"Curatable","citation":"Fungal Genet Biol 2012 Mar;49(3):235-49","cv_annotations":{"single_locus_phenotype":[{"annotations":[115312,115313],"is_not":false,"summary":null,"term":"FYPO:0006557"}]},"doi":"10.1016/j.fgb.2012.01.003","gene_count":2,"genes_by_uniquename":{"SJAG_02252":null,"SJAG_03143":null},"genotypes_by_uniquename":{"ace2delta":{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]},"sep1delta":{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}},"ltp_gene_count":2,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2012","pubmed_entrez_date":"2012-02-04","pubmed_publication_date":"Mar 2012","terms_by_termid":{"FYECO:0000137":null,"FYPO:0006557":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null},"title":"Conserved regulators of the cell separation process in Schizosaccharomyces.","uniquename":"PMID:22300943"}


id: PMID:34200466
data:
  {"abstract":"The Rho family of GTPases represents highly conserved molecular switches involved in a plethora of physiological processes. Fission yeast  Schizosaccharomyces pombe  has become a fundamental model organism to study the functions of Rho GTPases over the past few decades. In recent years, another fission yeast species,  Schizosaccharomyces japonicus , has come into focus offering insight into evolutionary changes within the genus. Both fission yeasts contain only six Rho-type GTPases that are spatiotemporally controlled by multiple guanine-nucleotide exchange factors (GEFs) and GTPase-activating proteins (GAPs), and whose intricate regulation in response to external cues is starting to be uncovered. In the present review, we will outline and discuss the current knowledge and recent advances on how the fission yeasts Rho family GTPases regulate essential physiological processes such as morphogenesis and polarity, cellular integrity, cytokinesis and cellular differentiation.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Vicente-Soler J, Soto T, Franco A, Cansado J, Madrid M","authors_abbrev":"Vicente-Soler J et al.","canto_added_date":"2023-05-04 00:40:04","canto_curator_role":"JaponicusDB","canto_triage_status":"Review or comment","citation":"Cells 2021 Jun 07;10(6)","cv_annotations":{},"doi":"10.3390/cells10061422","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2021","pubmed_entrez_date":"2021-07-02","pubmed_publication_date":"07 Jun 2021","terms_by_termid":{},"title":"The Multiple Functions of Rho GTPases in Fission Yeasts.","uniquename":"PMID:34200466"}


id: PMID:23145069
data:
  {"abstract":"The ERH gene encodes a highly conserved small nuclear protein with a unique amino acid sequence and three-dimensional structure but unknown function. The gene is present in animals, plants, and protists but to date has only been found in few fungi. Here we report that ERH homologs are also present in all four species from the genus Schizosaccharomyces, S. pombe, S. octosporus, S. cryophilus, and S. japonicus, which, however, are an exception in this respect among Ascomycota and Basidiomycota. The ERH protein sequence is moderately conserved within the genus (58% identity between S. pombe and S.japonicus), but the intron-rich genes have almost identical intron-exon organizations in all four species. In S. pombe, erh1(+) is expressed at a roughly constant level during vegetative growth and adaptation to unfavorable conditions such as nutrient limitation and hyperosmotic stress caused by sorbitol. Erh1p localizes preferentially to the nucleus with the exception of the nucleolus, but is also present in the cytoplasm. Cells lacking erh1(+) have an aberrant cell morphology and a comma-like shape when cultured to the stationary phase, and exhibit a delayed recovery from this phase followed by slower growth. Loss of erh1(+) in an auxotrophic background results in enhanced arrest in the G1 phase following nutritional stress, and also leads to hypersensitivity to agents inducing hyperosmotic stress (sorbitol), inhibiting DNA replication (hydroxyurea), and destabilizing the plasma membrane (SDS); this hypersensitivity can be abolished by expression of S. pombe erh1(+) and, to a lesser extent, S. japonicus erh1(+) or human ERH. Erh1p fails to interact with the human Ciz1 and PDIP46/SKAR proteins, known molecular partners of human ERH. Our data suggest that in Schizosaccharomyces sp. erh1(+) is non-essential for normal growth and Erh1p could play a role in response to adverse environmental conditions and in cell cycle regulation.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Krzyzanowski MK, Kozlowska E, Kozlowski P","authors_abbrev":"Krzyzanowski MK et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Sequence feature or region","citation":"PLoS One 2012;7(11):e49059","cv_annotations":{},"doi":"10.1371/journal.pone.0049059","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2012","pubmed_entrez_date":"2012-11-13","pubmed_publication_date":"2012","terms_by_termid":{},"title":"Identification and functional analysis of the erh1(+) gene encoding enhancer of rudimentary homolog from the fission yeast Schizosaccharomyces pombe.","uniquename":"PMID:23145069"}


id: GO_REF:0000114
data:
  {"abstract":"Method for transferring manual annotations to an entry based on a curator's judgment of its similarity to a putative homolog that has annotations that are supported with experimental evidence. Annotations are created when a curator judges that the sequence, composition and function of a complex shows high similarity to another complex that has annotation(s) supported by experimental evidence (and therefore display one of the evidence codes ECO:0000353 [IPI] or ECO:0005543). Annotations resulting from the transfer of GO terms display the ECO:0005610, ECO:0005544 or ECO:0005546 evidence codes and include an accession for the complex from which the annotation was projected in the 'with/from' field (column 8). This field MUST contain a Complex Portal accession identifier. Putative homologs are chosen using information combined from a variety of complementary sources. Potential homologs are initially identified using sequence similarity search programs such as BLAST. Homologous relationships are then verified manually using a combination of resources including sequence analysis tools, phylogenetic and comparative genomics databases such as Ensembl Compara, INPARANOID and OrthoMCL, as well as other specialised databases such as species-specific collections (e.g. HGNC's HCOP). In all cases curators check the alignments for each complex component and use their experience to assess whether similarity is considered to be strong enough to infer that the two proteins have a common function so that they can confidently project an annotation. While there is no fixed cut-off point in percentage sequence similarity, generally proteins which have greater than 70% identity that covers greater than 90% of the length of both proteins are examined further. Whilst we expect subunit composition to be conserved between closely related species, this is not an absolute rule and orthologous complexes may differ if a subunit cannot be traced in one species or is experimentally shown not to be present. When there is evidence of multiple paralogs for a single species, multiple variants of the complex can be inferred.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Birgit Meldal and Sandra Orchard (1). (1) European Bioinformatics Institute (EBI), Hinxton, Cambridgeshire, United Kingdom","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Manual transfer of experimentally-verified manual GO annotation data to homologous complexes by curator judgment of sequence, composition and function similarity","uniquename":"GO_REF:0000114"}


id: GO_REF:0000090
data:
  {"abstract":"We have created a rule-based approach to create relations between the branches of the Gene Ontology. The approach uses the equivalence axioms and a given pattern to create non-subClassOf relationships between the three different branches of the Gene Ontology (biological process, molecular function, cellular component). Currently, there are the following rules: \"'transporter activity' and 'transports_or_maintains_localization_of' some X' -part_of-> \"transport and 'transports_or_maintains_localization_of' some X\"; \"'transmembrane transporter activity' and 'transports_or_maintains_localization_of' some X -part_of-> 'transmembrane transport' and 'transports_or_maintains_localization_of' some X\"","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Automatic creation of relationships between ontology branches in the Gene Ontology","uniquename":"GO_REF:0000090"}


id: PMID:25318672
data:
  {"abstract":"Excess fatty acids and sterols are stored as triacylglycerols and sterol esters in specialized cellular organelles, called lipid droplets. Understanding what determines the cellular amount of neutral lipids and their packaging into lipid droplets is of fundamental and applied interest. Using two species of fission yeast, we show that cycling cells deficient in the function of the ER-resident CDP-DG synthase Cds1 exhibit markedly increased triacylglycerol content and assemble large lipid droplets closely associated with the ER membranes. We demonstrate that these unusual structures recruit the triacylglycerol synthesis machinery and grow by expansion rather than by fusion. Our results suggest that interfering with the CDP-DG route of phosphatidic acid utilization rewires cellular metabolism to adopt a triacylglycerol-rich lifestyle reliant on the Kennedy pathway. ","alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"}},"annotation_curators":[{"annotation_count":8,"community_curator":false,"file_name":null,"file_type":null,"name":"Snezhana Oliferenko","orcid":"0000-0002-8138-6851"}],"annotation_details":{},"annotation_file_curators":[],"approved_date":"2021-05-17","authors":"He Y, Yam C, Pomraning K, Chin JS, Yew JY, Freitag M, Oliferenko S","authors_abbrev":"He Y et al.","canto_added_date":"2021-05-10 02:38:06","canto_annotation_status":"APPROVED","canto_approved_date":"2021-05-17 12:42:41","canto_approver_orcid":"0000-0002-8138-6851","canto_curator_name":"Snezhana Oliferenko","canto_curator_role":"JaponicusDB","canto_first_approved_date":"2021-05-17 12:42:41","canto_session_key":"f89ee2d26032c510","canto_session_submitted_date":"2021-05-17 12:42:28","canto_triage_status":"Curatable","citation":"Mol Biol Cell 2014 Dec 15;25(25):4083-95","cv_annotations":{"biological_process":[{"annotations":[115767],"is_not":false,"summary":null,"term":"GO:0016024"}],"cellular_component":[{"annotations":[115768],"is_not":false,"summary":null,"term":"GO:0005783"}],"molecular_function":[{"annotations":[115766],"is_not":false,"summary":null,"term":"GO:0004605"}],"single_locus_phenotype":[{"annotations":[115770],"is_not":false,"summary":null,"term":"FYPO:0000356"},{"annotations":[115769],"is_not":false,"summary":null,"term":"FYPO:0006433"},{"annotations":[115772],"is_not":false,"summary":null,"term":"FYPO:0004695"},{"annotations":[115771],"is_not":false,"summary":null,"term":"FYPO:0002227"},{"annotations":[115773],"is_not":false,"summary":null,"term":"FYPO:0001357"}]},"doi":"10.1091/mbc.E14-03-0832","gene_count":1,"genes_by_uniquename":{"SJAG_00426":null},"genotypes_by_uniquename":{"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]}},"ltp_gene_count":1,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2014","pubmed_entrez_date":"2014-10-17","pubmed_publication_date":"15 Dec 2014","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000006":null,"FYECO:0000162":null,"FYPO:0000356":null,"FYPO:0001357":null,"FYPO:0002227":null,"FYPO:0004695":null,"FYPO:0006433":null,"FYPO_EXT:0000001":null,"GO:0004605":null,"GO:0005783":null,"GO:0008654":null,"GO:0016024":null},"title":"Increase in cellular triacylglycerol content and emergence of large ER-associated lipid droplets in the absence of CDP-DG synthase function.","uniquename":"PMID:25318672"}


id: GO_REF:0000041
data:
  {"abstract":"Transitive assignment of GO terms based on the UniPathway pathway vocabulary. UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways. Descriptions of the pathway(s) that a particular protein is involved in are included in UniProtKB records.<br>UniPathway data are cross-linked to existing pathway resources such as KEGG and MetaCyc. Further information on the UniPathway resource is available at http://www.unipathway.org/obiwarehouse/unipathway.<br>When a UniPathway pathway describes a concept that is within the scope of the Gene Ontology, it is investigated to determine whether it is appropriate to map the term to an equivalent term in GO. The mapping between UniPathway terms and GO terms is carried out manually. Definitions and hierarchies of the terms in the two resources are compared and the mapping generated will reflect the most correct correspondence. The translation table between GO terms and UniPathway pathways is maintained by the UniPathway team and is available at http://www.grenoble.prabi.fr/dev/obiwarehouse/download/unipathway/public/unipathway2go.tsv.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"UniProt-GOA","canto_curator_role":"JaponicusDB","cv_annotations":{"biological_process":[{"annotations":[65177],"is_not":false,"summary":null,"term":"GO:0006021"},{"annotations":[66662],"is_not":false,"summary":null,"term":"GO:0006782"},{"annotations":[57718],"is_not":false,"summary":null,"term":"GO:0006048"}]},"gene_count":3,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_00519":null,"SJAG_03739":null},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{"GO:0006021":null,"GO:0006048":null,"GO:0006782":null},"title":"Gene Ontology annotation based on UniPathway vocabulary mapping. ","uniquename":"GO_REF:0000041"}


id: GO_REF:0000116
data:
  {"abstract":"Rhea (https://www.rhea-db.org/, PMID:30272209) is an expert-curated knowledgebase of chemical and transport reactions of biological interest - and the standard for enzyme and transporter annotation in UniProtKB (PMID:31688925). Rhea uses the chemical dictionary ChEBI (Chemical Entities of Biological Interest) to describe reaction participants and their chemical transformations in a computationally tractable manner. GO terms corresponding to Rhea reactions are assigned a Rhea database cross-reference. The corresponding GO term is automatically applied to all UniProt entries annotated with a Rhea reaction. The mapping file is available at: http://current.geneontology.org/ontology/external2go/rhea2go.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO Central curators, GOA curators, Rhea curators","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Automatic Gene Ontology annotation based on Rhea mapping.","uniquename":"GO_REF:0000116"}


id: PMID:25308606
data:
  {"abstract":"The non-pathogenic dimorphic fission yeast, Schizosaccharomyces japonicus, could be a suitable model organism for investigation of the genetic background of mycelial growth, as it has a haploid chromosome set and its genome is sequenced. Since earlier results have suggested that its morphological transition required solid substrates, but molecular biological experiments would require hyphae production in a liquid medium, we wanted to find circumstances which would enable hyphae production in liquid media. Several external conditions were investigated, but the strongest inducer was fetal bovine serum (FBS). Its positive effect could be hampered by heat and was dependent on pH, temperature and concentration of the serum. Other protein-containing compounds, such as peptone and bovine serum albumin or amino acids, proved to be ineffective or weak. Generally, the uninduced and induced mycelial growth of Sz. japonicus could be improved by lower external pH and higher temperature.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Papp L, Sipiczki M, Holb IJ, Miklós I","authors_abbrev":"Papp L et al.","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Cell composition or WT feature","citation":"Yeast 2014 Dec;31(12):475-82","cv_annotations":{},"doi":"10.1002/yea.3048","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2014","pubmed_entrez_date":"2014-10-14","pubmed_publication_date":"Dec 2014","terms_by_termid":{},"title":"Optimal conditions for mycelial growth of Schizosaccharomyces japonicus cells in liquid medium: it enables the molecular investigation of dimorphism.","uniquename":"PMID:25308606"}


id: GO_REF:0000086
data:
  {"abstract":"We have created a standard template for classes describing the differentiation process for a cell type as a biological process. The underlying equivalence axiom template is \"GO:0030154 and 'results in acquisition of features of' some C\", where C is a native cell (CL:0000003).","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"GO ontology editors","canto_curator_role":"JaponicusDB","cv_annotations":{},"gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{},"title":"Representation of cell differentiation as biological process in the Gene Ontology","uniquename":"GO_REF:0000086"}


id: GO_REF:0000104
data:
  {"abstract":"GO terms are manually assigned to each rule in UniRule. These rules are prepared manually by UniProt curators based on the annotations present in reviewed UniProtKB/Swiss-Prot records that share sequence features, sequence similarity and taxonomy. The assigned GO terms are then transferred to all unreviewed UniProtKB/TrEMBL proteins that meet the conditions given in the UniRule rule. GO annotations using this technique receive the evidence code Inferred from Electronic Annotation (IEA; ECO:0000501). These annotations are updated regularly by UniProt and are available for download on both the GO and GOA EBI ftp sites. To report an annotation error or inconsistency, or for further information, please contact the UniProt Automated Annotation team at automated_annotation@ebi.ac.uk. UniRule is a collaboration between the European Bioinformatics Institute (EMBL-EBI), the Swiss Institute of Bioinformatics (SIB), and the Protein Information Resource at Georgetown University (PIR). For further information, please see UniProt: a hub for protein information Nucleic Acids Res. 2015, 43, D204, doi: 10.1093/nar/gku989 or www.uniprot.org.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"UniProt curators","canto_curator_role":"JaponicusDB","cv_annotations":{"biological_process":[{"annotations":[64150],"is_not":false,"summary":null,"term":"GO:0030041"},{"annotations":[61873],"is_not":false,"summary":null,"term":"GO:0006308"},{"annotations":[58455,65372,67671],"is_not":false,"summary":null,"term":"GO:0006281"},{"annotations":[61007],"is_not":false,"summary":null,"term":"GO:0006488"},{"annotations":[63960],"is_not":false,"summary":null,"term":"GO:0071788"},{"annotations":[56891,60327,62129,62803,63675,66522,66729,67702],"is_not":false,"summary":null,"term":"GO:0006541"},{"annotations":[64885],"is_not":false,"summary":null,"term":"GO:0006071"},{"annotations":[67028],"is_not":false,"summary":null,"term":"GO:0043647"},{"annotations":[67669],"is_not":false,"summary":null,"term":"GO:0016226"},{"annotations":[58131],"is_not":false,"summary":null,"term":"GO:0016042"},{"annotations":[61105],"is_not":false,"summary":null,"term":"GO:0051321"},{"annotations":[58883],"is_not":false,"summary":null,"term":"GO:0045292"},{"annotations":[61046,63427,64107],"is_not":false,"summary":null,"term":"GO:0006397"},{"annotations":[57994,63914],"is_not":false,"summary":null,"term":"GO:0051028"},{"annotations":[61002],"is_not":false,"summary":null,"term":"GO:0016095"},{"annotations":[68016],"is_not":false,"summary":null,"term":"GO:1903599"},{"annotations":[63959],"is_not":false,"summary":null,"term":"GO:1903373"},{"annotations":[65803,67565],"is_not":false,"summary":null,"term":"GO:0045901"},{"annotations":[65804,67566],"is_not":false,"summary":null,"term":"GO:0045905"},{"annotations":[60718,67001],"is_not":false,"summary":null,"term":"GO:0097354"},{"annotations":[59846],"is_not":false,"summary":null,"term":"GO:0006612"},{"annotations":[60839,64344],"is_not":false,"summary":null,"term":"GO:0015031"},{"annotations":[68135],"is_not":false,"summary":null,"term":"GO:0042176"},{"annotations":[65259],"is_not":false,"summary":null,"term":"GO:0042254"},{"annotations":[59258],"is_not":false,"summary":null,"term":"GO:0031167"}],"cellular_component":[{"annotations":[64346,66876],"is_not":false,"summary":null,"term":"GO:0005737"},{"annotations":[58965],"is_not":false,"summary":null,"term":"GO:0030659"},{"annotations":[59456,61664,62792,66950],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[58964,59648,60961,62171,67313],"is_not":false,"summary":null,"term":"GO:0005789"},{"annotations":[63957],"is_not":false,"summary":null,"term":"GO:0098826"},{"annotations":[60368],"is_not":false,"summary":null,"term":"GO:0010008"},{"annotations":[58028,59162,60852,65186,65879],"is_not":false,"summary":null,"term":"GO:0000139"},{"annotations":[57024,57402,57721,64623],"is_not":false,"summary":null,"term":"GO:0016020"},{"annotations":[57854,62949,67473],"is_not":false,"summary":null,"term":"GO:0005743"},{"annotations":[66132,66659],"is_not":false,"summary":null,"term":"GO:0005759"},{"annotations":[67875],"is_not":false,"summary":null,"term":"GO:0031533"},{"annotations":[60103],"is_not":false,"summary":null,"term":"GO:0031965"},{"annotations":[56916,59658,60222,61239],"is_not":false,"summary":null,"term":"GO:0005634"},{"annotations":[58700],"is_not":false,"summary":null,"term":"GO:0005681"}],"molecular_function":[{"annotations":[61004],"is_not":false,"summary":null,"term":"GO:0003865"},{"annotations":[67315],"is_not":false,"summary":null,"term":"GO:0030246"},{"annotations":[60223,60374,63441,64057],"is_not":false,"summary":null,"term":"GO:0003677"},{"annotations":[60392,68137],"is_not":false,"summary":null,"term":"GO:0030234"},{"annotations":[60512],"is_not":false,"summary":null,"term":"GO:0005525"},{"annotations":[60265,67167],"is_not":false,"summary":null,"term":"GO:0016829"},{"annotations":[56824,57457,59251,59893,60149,60279,60549,61026,61211,61681,61870,62399,62840,62892,63436,63647,64059,64917,66082,66482,67026,67948,68427,68625],"is_not":false,"summary":null,"term":"GO:0046872"},{"annotations":[61319,65133],"is_not":false,"summary":null,"term":"GO:0008509"},{"annotations":[64591],"is_not":false,"summary":null,"term":"GO:0045131"},{"annotations":[56978,57067,58564,59259,59757,61274,66235,66902,66904,67212,67525],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[59260],"is_not":false,"summary":null,"term":"GO:0000179"},{"annotations":[57910],"is_not":false,"summary":null,"term":"GO:0008270"}]},"gene_count":110,"genes_by_uniquename":{"SJAG_00054":null,"SJAG_00083":null,"SJAG_00097":null,"SJAG_00159":null,"SJAG_00231":null,"SJAG_00249":null,"SJAG_00261":null,"SJAG_00328":null,"SJAG_00339":null,"SJAG_00396":null,"SJAG_00471":null,"SJAG_00473":null,"SJAG_00525":null,"SJAG_00530":null,"SJAG_00537":null,"SJAG_00583":null,"SJAG_00616":null,"SJAG_00634":null,"SJAG_00645":null,"SJAG_00691":null,"SJAG_00811":null,"SJAG_00887":null,"SJAG_01004":null,"SJAG_01044":null,"SJAG_01075":null,"SJAG_01184":null,"SJAG_01260":null,"SJAG_01355":null,"SJAG_01375":null,"SJAG_01385":null,"SJAG_01409":null,"SJAG_01415":null,"SJAG_01455":null,"SJAG_01542":null,"SJAG_01574":null,"SJAG_01630":null,"SJAG_01672":null,"SJAG_01677":null,"SJAG_01702":null,"SJAG_01720":null,"SJAG_01941":null,"SJAG_01949":null,"SJAG_02019":null,"SJAG_02189":null,"SJAG_02203":null,"SJAG_02245":null,"SJAG_02261":null,"SJAG_02275":null,"SJAG_02287":null,"SJAG_02320":null,"SJAG_02345":null,"SJAG_02408":null,"SJAG_02416":null,"SJAG_02425":null,"SJAG_02463":null,"SJAG_02524":null,"SJAG_02532":null,"SJAG_02557":null,"SJAG_02583":null,"SJAG_02627":null,"SJAG_02655":null,"SJAG_02720":null,"SJAG_02794":null,"SJAG_02812":null,"SJAG_02821":null,"SJAG_02866":null,"SJAG_02907":null,"SJAG_03038":null,"SJAG_03070":null,"SJAG_03158":null,"SJAG_03250":null,"SJAG_03289":null,"SJAG_03328":null,"SJAG_03355":null,"SJAG_03396":null,"SJAG_03479":null,"SJAG_03539":null,"SJAG_03574":null,"SJAG_03588":null,"SJAG_03593":null,"SJAG_03594":null,"SJAG_03609":null,"SJAG_03638":null,"SJAG_03650":null,"SJAG_03775":null,"SJAG_03810":null,"SJAG_03812":null,"SJAG_03866":null,"SJAG_03877":null,"SJAG_03997":null,"SJAG_04021":null,"SJAG_04088":null,"SJAG_04096":null,"SJAG_04111":null,"SJAG_04183":null,"SJAG_04208":null,"SJAG_04217":null,"SJAG_04233":null,"SJAG_04350":null,"SJAG_04368":null,"SJAG_04474":null,"SJAG_04488":null,"SJAG_04502":null,"SJAG_04634":null,"SJAG_04757":null,"SJAG_04837":null,"SJAG_04880":null,"SJAG_04954":null,"SJAG_05024":null,"SJAG_05323":null},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"terms_by_termid":{"GO:0000139":null,"GO:0000179":null,"GO:0003677":null,"GO:0003723":null,"GO:0003865":null,"GO:0005525":null,"GO:0005634":null,"GO:0005681":null,"GO:0005737":null,"GO:0005743":null,"GO:0005759":null,"GO:0005783":null,"GO:0005789":null,"GO:0006071":null,"GO:0006281":null,"GO:0006308":null,"GO:0006397":null,"GO:0006488":null,"GO:0006541":null,"GO:0006612":null,"GO:0008270":null,"GO:0008509":null,"GO:0010008":null,"GO:0015031":null,"GO:0016020":null,"GO:0016042":null,"GO:0016095":null,"GO:0016226":null,"GO:0016829":null,"GO:0030041":null,"GO:0030234":null,"GO:0030246":null,"GO:0030659":null,"GO:0031167":null,"GO:0031533":null,"GO:0031965":null,"GO:0042176":null,"GO:0042254":null,"GO:0043647":null,"GO:0045131":null,"GO:0045292":null,"GO:0045901":null,"GO:0045905":null,"GO:0046872":null,"GO:0051028":null,"GO:0051321":null,"GO:0071788":null,"GO:0097354":null,"GO:0098826":null,"GO:1903373":null,"GO:1903599":null},"title":"Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features.","uniquename":"GO_REF:0000104"}


id: PMID:24375690
data:
  {"abstract":"The clade of Schizosaccharomyces includes 4 species: S. pombe, S. octosporus, S. cryophilus, and S. japonicus. Although all 4 species exhibit unicellular growth with a binary fission mode of cell division, S. japonicus alone is dimorphic yeast, which can transit from unicellular yeast to long filamentous hyphae. Recently it was found that the hyphal cells response to light and then synchronously activate cytokinesis of hyphae. In addition to hyphal growth, S. japonicas has many properties that aren't shared with other fission yeast. Mitosis of S. japonicas is referred to as semi-open mitosis because dynamics of nuclear membrane is an intermediate mode between open mitosis and closed mitosis. Novel genetic tools and the whole genomic sequencing of S. japonicas now provide us with an opportunity for revealing unique characters of the dimorphic yeast.","alleles_by_uniquename":{},"annotation_curators":[],"annotation_details":{},"annotation_file_curators":[],"authors":"Niki H","authors_abbrev":"Niki H","canto_added_date":"2021-05-10 08:46:37","canto_curator_role":"JaponicusDB","canto_triage_status":"Review or comment","citation":"Yeast 2014 Mar;31(3):83-90","cv_annotations":{},"doi":"10.1002/yea.2996","gene_count":0,"genes_by_uniquename":{},"genotypes_by_uniquename":{},"ltp_gene_count":0,"ortholog_annotations":[],"paralog_annotations":[],"physical_interactions":[],"publication_year":"2014","pubmed_entrez_date":"2013-12-31","pubmed_publication_date":"Mar 2014","terms_by_termid":{},"title":"Schizosaccharomyces japonicus: the fission yeast is a fusion of yeast and hyphae.","uniquename":"PMID:24375690"}


id: GO_REF:0000107
data:
  {"abstract":"GO terms from a source species are projected onto one or more target species based on gene orthology obtained from Ensembl Compara. One-to-one, one-to-many and many-to-many orthology relations and anntations are transferred between orthologs that have at least a 40% peptide identity to each other. Only GO annotations with evidence codes ECO:0000314 (IDA), ECO:0000270 (IEP), ECO:0000316 (IGI), ECO:0000315 (IMP), and ECO:0000353 (IPI), or their descendants, are transferred; annotations with a 'NOT' qualifier are not transferred, and neither are annotations to GO:0005515 (protein binding). Annotations that are transferred using this method receive the evidence code ECO:0000265 (sequence orthology evidence used in automatic assertion), which maps up to the GO Inferred from Electronic Annotation (IEA) evidence code.  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