# terms

id: PBO:0017437
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-related_via_localization_to","termid":"PBO:0017437"}


id: GO:0070900
data:
  {"annotated_genes":["SJAG_04113","SJAG_04367","SJAG_02302","SJAG_00358","SJAG_00255","SJAG_04700","SJAG_00865"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97462],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070901"},{"annotations":[110400,114789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072670"},{"annotations":[113135,90306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990799"},{"annotations":[88825,104606],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070899"}]},"cv_name":"biological_process","definition":"The covalent alteration of one or more nucleotides within a mitochondrial tRNA molecule to produce a mitochondrial tRNA molecule with a sequence that differs from that coded genetically.","definition_xrefs":["GOC:mah","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"},{"relation_name":"is_a","term_name":"tRNA threonylcarbamoyladenosine metabolic process","termid":"GO:0070525"},{"relation_name":"is_a","term_name":"mitochondrial tRNA processing","termid":"GO:0090646"},{"relation_name":"is_a","term_name":"mitochondrial RNA modification","termid":"GO:1900864"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00255":null,"SJAG_00358":null,"SJAG_00865":null,"SJAG_02302":null,"SJAG_04113":null,"SJAG_04367":null,"SJAG_04700":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0140053","GO:0008150","GO:0010467","GO:0006399"],"is_obsolete":false,"name":"mitochondrial tRNA modification","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070900","terms_by_termid":{"GO:0070899":null,"GO:0070901":null,"GO:0072670":null,"GO:1990799":null}}


id: PBO:0060052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 40","termid":"PBO:0060052"}


id: PBO:0060027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 15","termid":"PBO:0060027"}


id: GO:1904345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of gastric mucosal blood circulation.","definition_xrefs":["GO_REF:0000058","PMID:10807413","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of blood circulation","termid":"GO:1903523"},{"relation_name":"is_a","term_name":"regulation of gastric mucosal blood circulation","termid":"GO:1904344"},{"relation_name":"negatively_regulates","term_name":"gastric mucosal blood circulation","termid":"GO:1990768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of gastric mucosal blood circulation","synonyms":[{"name":"down regulation of gastric mucosal blood circulation","type":"exact"},{"name":"down regulation of stomach mucosal blood circulation","type":"exact"},{"name":"down-regulation of gastric mucosal blood circulation","type":"exact"},{"name":"down-regulation of stomach mucosal blood circulation","type":"exact"},{"name":"downregulation of gastric mucosal blood circulation","type":"exact"},{"name":"downregulation of stomach mucosal blood circulation","type":"exact"},{"name":"inhibition of gastric mucosal blood circulation","type":"narrow"},{"name":"inhibition of stomach mucosal blood circulation","type":"narrow"},{"name":"negative regulation of stomach mucosal blood circulation","type":"exact"}],"termid":"GO:1904345"}


id: GO:0062102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Division of a female germline stem cell to produce two germline stem cells of the same type as the parent.","definition_xrefs":["PMID:30248087","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germline stem cell symmetric division","termid":"GO:0098729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"female germline stem cell symmetric division","termid":"GO:0062102"}


id: FYPO:0002185
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of germinated spores and tapered vegetative cells. The tapered cells arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including germinated spores and tapered cells (obsolete FYPO:0002185)","synonyms":[{"name":"inviable mixed population including germinated spores and bottle/skittle cells","type":"related"},{"name":"inviable mixed population including germinated spores and skittle-shaped cells","type":"exact"}],"termid":"FYPO:0002185"}


id: PBO:0091273
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"low complexity gene-free region","termid":"PBO:0091273"}


id: GO:0106192
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates linked to the hydrolysis of a nucleoside triphosphate.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on inorganic cations and their chelates linked to the hydrolysis of a nucleoside triphosphate (obsolete GO:0106192)","termid":"GO:0106192"}


id: GO:0033509
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including propionate.","definition_xrefs":["MetaCyc:PWY-5088","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate catabolic process","termid":"GO:0006538"},{"relation_name":"is_a","term_name":"propionate metabolic process","termid":"GO:0019541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006629","GO:0006520","GO:0008150","GO:0044248","GO:0044281"],"is_obsolete":false,"name":"glutamate catabolic process to propionate","synonyms":[{"name":"glutamate breakdown to propionate","type":"exact"},{"name":"glutamate degradation to propionate","type":"exact"}],"termid":"GO:0033509"}


id: FYPO:0000201
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone deacetylation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone modification during vegetative growth","termid":"FYPO:0000330"},{"relation_name":"is_a","term_name":"abnormal protein deacetylation during vegetative growth","termid":"FYPO:0004485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"abnormal histone deacetylation during vegetative growth","synonyms":[{"name":"abnormal histone deacetylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000201"}


id: PBO:0004253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calreticulin/calnexin homolog (predicted)","termid":"PBO:0004253"}


id: PBO:0048637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein alpha 6, pseudogene","termid":"PBO:0048637"}


id: GO:1901953
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anterograde dense core granule transport.","definition_xrefs":["PMID:23358451","GOC:TermGenie","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vesicle transport along microtubule","termid":"GO:1901610"},{"relation_name":"is_a","term_name":"regulation of anterograde dense core granule transport","termid":"GO:1901951"},{"relation_name":"is_a","term_name":"positive regulation of dense core granule transport","termid":"GO:1904811"},{"relation_name":"positively_regulates","term_name":"anterograde neuronal dense core vesicle transport","termid":"GO:1990048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of anterograde dense core granule transport","synonyms":[{"name":"activation of anterograde dense core granule transport","type":"narrow"},{"name":"up regulation of anterograde dense core granule transport","type":"exact"},{"name":"up-regulation of anterograde dense core granule transport","type":"exact"},{"name":"upregulation of anterograde dense core granule transport","type":"exact"}],"termid":"GO:1901953"}


id: GO:0005791
data:
  {"annotated_genes":["SJAG_02208","SJAG_00064","SJAG_02588","SJAG_00959","SJAG_03955","SJAG_01558","SJAG_00360","SJAG_00175","SJAG_02354","SJAG_02330"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[94120,102282,104437,105466],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005784"},{"annotations":[106541,86611,91791,105760],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031207"},{"annotations":[90318,105886],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005785"},{"annotations":[94121],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071261"}]},"cv_name":"cellular_component","definition":"The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum","termid":"GO:0005783"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00064":null,"SJAG_00175":null,"SJAG_00360":null,"SJAG_00959":null,"SJAG_01558":null,"SJAG_02208":null,"SJAG_02330":null,"SJAG_02354":null,"SJAG_02588":null,"SJAG_03955":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005783","GO:0005575"],"is_obsolete":false,"name":"rough endoplasmic reticulum","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["NIF_Subcellular:sao1881364067","Wikipedia:Endoplasmic_reticulum#Rough_endoplasmic_reticulum"],"synonyms":[{"name":"RER","type":"exact"},{"name":"rough ER","type":"exact"}],"termid":"GO:0005791","terms_by_termid":{"GO:0005784":null,"GO:0005785":null,"GO:0031207":null,"GO:0071261":null}}


id: PBO:0000228
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"domain combination not observed in other organisms","termid":"PBO:0000228"}


id: FYPO:0003838
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actomyosin contractile ring contraction does not occur. Contractile ring contraction is the part of cytokinesis in which the actomyosin contractile ring constricts.","definition_xrefs":["PomBase:mah","GO:1902404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring contraction","termid":"FYPO:0001364"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0004803","FYPO:0005447","FYPO:0000631","FYPO:0001320","FYPO:0000032","FYPO:0001985"],"is_obsolete":false,"name":"abolished actomyosin contractile ring contraction","synonyms":[{"name":"abolished actomyosin contractile ring constriction","type":"exact"},{"name":"abolished actomyosin contractile ring contraction during mitotic cell cycle","type":"related"},{"name":"abolished actomyosin contractile ring contraction during vegetative growth","type":"exact"},{"name":"abolished cytokinesis with stable actinomyosin ring","type":"related"},{"name":"abolished cytokinetic contractile ring contraction","type":"exact"},{"name":"abolished mitotic actomyosin contractile ring contraction","type":"exact"},{"name":"abolished mitotic contractile ring contraction","type":"exact"},{"name":"actomyosin contractile ring contraction abolished","type":"exact"}],"termid":"FYPO:0003838"}


id: GO:0036375
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An apical protein complex that contains the proteins Kibra, Expanded and Merlin (Mer), or orthologs thereof. In humans, the complex contains KIBRA, FDM6 and NF2.","definition_xrefs":["PMID:20159598"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"apical part of cell","termid":"GO:0045177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Kibra-Ex-Mer complex","synonyms":[{"name":"KEM complex","type":"exact"},{"name":"Kbr, Ex and Mer complex","type":"exact"}],"termid":"GO:0036375"}


id: PBO:0073997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 4","termid":"PBO:0073997"}


id: PBO:0047043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 106 member D, pseudogene","termid":"PBO:0047043"}


id: GO:0021602
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the cranial nerves are generated and organized. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions.","definition_xrefs":["ISBN:0838580343","GOC:dph","GO_REF:0000021","GOC:cls","GOC:jid","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"cranial nerve development","termid":"GO:0021545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cranial nerve morphogenesis","termid":"GO:0021602"}


id: GO:0021930
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of neuroblasts that will give rise to granule cells. A granule cell is a glutamatergic interneuron found in the cerebellar cortex.","definition_xrefs":["GOC:dph","GOC:cls","GOC:jid","GO_REF:0000021","PMID:15157725","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell proliferation in external granule layer","termid":"GO:0021924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar granule cell precursor proliferation","termid":"GO:0021930"}


id: PBO:0029664
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_DNA_topoisomerase_type_I_activity","termid":"PBO:0029664"}


id: GO:0060677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental growth in which the ureteric bud grows along its axis beginning with the growth of the primary ureteric bud and ending when the branches of the bud have elongated.","definition_xrefs":["PMID:16916378","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"},{"relation_name":"part_of","term_name":"ureteric bud morphogenesis","termid":"GO:0060675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ureteric bud elongation","termid":"GO:0060677"}


id: GO:0060363
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which any suture between cranial bones is generated and organized.","definition_xrefs":["GOC:pr","GOC:dph","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"craniofacial suture morphogenesis","termid":"GO:0097094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cranial suture morphogenesis","termid":"GO:0060363"}


id: GO:0008929
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycerone phosphate = methylglyoxal + phosphate.","definition_xrefs":["EC:4.2.3.3","RHEA:17937"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"methylglyoxal synthase activity","secondary_identifiers":["KEGG_REACTION:R01016","MetaCyc:METHGLYSYN-RXN"],"synonyms":[{"name":"glycerone-phosphate phospho-lyase (methylglyoxal-forming)","type":"related"},{"name":"glycerone-phosphate phospho-lyase activity","type":"related"},{"name":"methylglyoxal synthetase activity","type":"related"}],"termid":"GO:0008929"}


id: PATO:0002292
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient","synonyms":[{"name":"transient structure","type":"exact"}],"termid":"PATO:0002292"}


id: PBO:0061667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUP50 divergent transcript","termid":"PBO:0061667"}


id: GO:0009503
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A thylakoid membrane complex of chlorophylls a and b together with chlorophyll a-b binding proteins. In addition, LHCs contain a number of other proteins, the function of which is speculative, together with accessory pigments. The LHCs capture and transfer energy to photosystems I and II. An example of this is found in Arabidopsis thaliana.","definition_xrefs":["GOC:mtg_sensu","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"light-harvesting complex","termid":"GO:0030076"},{"relation_name":"is_a","term_name":"chloroplast thylakoid membrane protein complex","termid":"GO:0098807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"thylakoid light-harvesting complex","termid":"GO:0009503"}


id: GO:0006293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The stabilization of the multiprotein complex involved in damage recognition, DNA helix unwinding, and endonucleolytic cleavage at the site of DNA damage as well as the unwound DNA. The stabilization of the protein-DNA complex ensures proper positioning of the preincision complex before the phosphodiester backbone of the damaged strand is cleaved 3' and 5' of the site of DNA damage.","definition_xrefs":["PMID:10197977","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"part_of","term_name":"nucleotide-excision repair","termid":"GO:0006289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0006259","GO:0008150","GO:0006281","GO:0044085"],"is_obsolete":false,"name":"nucleotide-excision repair, preincision complex stabilization","termid":"GO:0006293"}


id: GO:0050216
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + propane-1,2-diol 1-phosphate = H+ + hydroxyacetone phosphate + NADH.","definition_xrefs":["EC:1.1.1.7","RHEA:21584"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"propanediol-phosphate dehydrogenase activity","secondary_identifiers":["MetaCyc:PROPANEDIOL-PHOSPHATE-DEHYDROGENASE-RXN","KEGG_REACTION:R04236"],"termid":"GO:0050216"}


id: PBO:0077819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP53 regulating kinase","termid":"PBO:0077819"}


id: PATO:0000052
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphology","termid":"PATO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shape","secondary_identifiers":["PATO:0001647"],"synonyms":[{"name":"relational shape quality","type":"exact"}],"termid":"PATO:0000052"}


id: PBO:0074306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLX9 ribosome biogenesis factor","termid":"PBO:0074306"}


id: GO:2000157
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin-specific protease (deubiquitinase) activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of peptidase activity","termid":"GO:0010466"},{"relation_name":"is_a","term_name":"regulation of ubiquitin-specific protease activity","termid":"GO:2000152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of ubiquitin-specific protease activity","synonyms":[{"name":"negative regulation of UBP","type":"related"},{"name":"negative regulation of UCH2","type":"related"},{"name":"negative regulation of deubiquitinase activity","type":"exact"},{"name":"negative regulation of ubiquitin hydrolase activity","type":"exact"}],"termid":"GO:2000157"}


id: PBO:0069151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 402, pseudogene","termid":"PBO:0069151"}


id: GO:0071429
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a ribonucleoprotein complex that contains small nuclear RNA from the nucleus to the cytoplasm.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete snRNA-containing ribonucleoprotein complex export from nucleus (obsolete GO:0071429)","synonyms":[{"name":"snRNA-containing RNP export from nucleus","type":"exact"},{"name":"snRNA-containing ribonucleoprotein complex export from cell nucleus","type":"exact"},{"name":"snRNA-containing ribonucleoprotein complex nucleus export","type":"exact"},{"name":"snRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm","type":"exact"}],"termid":"GO:0071429"}


id: PBO:0065226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 7, synaptic","termid":"PBO:0065226"}


id: PBO:0083559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene PMT1/YDL095W; YDL096C is not essential","termid":"PBO:0083559"}


id: GO:0070794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of conidiophore development, a process that leads to the formation of a conidiophore. The conidiophore is a specialized hypha that extends aerially from the growth substrate and bears conidia, or asexual spores.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of conidiophore development","termid":"GO:0070793"},{"relation_name":"is_a","term_name":"negative regulation of spore-bearing organ development","termid":"GO:0075262"},{"relation_name":"negatively_regulates","term_name":"conidiophore development","termid":"GO:0070787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of conidiophore development","termid":"GO:0070794"}


id: PBO:0060160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-RNR2 like 8 (pseudogene)","termid":"PBO:0060160"}


id: GO:0051344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or reduces the rate of cyclic nucleotide phosphodiesterase activity, the catalysis of the reaction: nucleotide 3',5'-cyclic phosphate + H2O = nucleotide 5'-phosphate.","definition_xrefs":["GOC:tb","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cyclic-nucleotide phosphodiesterase activity","termid":"GO:0051342"},{"relation_name":"is_a","term_name":"negative regulation of hydrolase activity","termid":"GO:0051346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cyclic-nucleotide phosphodiesterase activity","synonyms":[{"name":"3',5' cyclic nucleotide phosphodiesterase inhibitor","type":"exact"},{"name":"3',5'-cyclic-AMP phosphodiesterase inhibitor","type":"narrow"},{"name":"cAMP phosphodiesterase inhibitor","type":"narrow"},{"name":"down regulation of cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"down-regulation of cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"downregulation of cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"inhibition of cyclic nucleotide phosphodiesterase activity","type":"narrow"},{"name":"negative regulation of 3',5' cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"negative regulation of 3',5'-cyclic-AMP phosphodiesterase activity","type":"narrow"},{"name":"negative regulation of cAMP phosphodiesterase activity","type":"narrow"},{"name":"negative regulation of cGMP phosphodiesterase activity","type":"narrow"},{"name":"negative regulation of cyclic nucleotide phosphodiesterase activity","type":"exact"},{"name":"phosphodiesterase inhibitor","type":"related"}],"termid":"GO:0051344"}


id: GO:0070550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the chromatin structure of the rDNA repeats is compacted. In S. cerevisiae, condensation and resolution of the rDNA occurs during anaphase.","definition_xrefs":["GOC:dgf","PMID:15137940","PMID:10811823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome condensation","termid":"GO:0030261"},{"relation_name":"part_of","term_name":"nucleolar chromatin organization","termid":"GO:1990700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0008150","GO:0006325"],"is_obsolete":false,"name":"rDNA chromatin condensation","synonyms":[{"name":"rDNA condensation","type":"exact"},{"name":"rDNA packaging","type":"exact"}],"termid":"GO:0070550"}


id: FYPO:0005990
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein is localized to the cell cortex of the cell tip during karyogamy involved in conjugation with cellular fusion, but does not remain there continuously.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during mating","termid":"FYPO:0005989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abnormal maintenance of protein location in cell cortex of cell tip during karyogamy","synonyms":[{"name":"abnormal maintenance of protein localization in cell cortex of cell tip during karyogamy","type":"exact"},{"name":"abnormal maintenance of protein location in cell cortex of cell tip during karyogamy involved in conjugation with cellular fusion","type":"exact"},{"name":"abnormal maintenance of protein location in cell cortex of cell tip during nuclear fusion during mating","type":"exact"},{"name":"unstable protein localisation to cell cortex of cell tip during karyogamy","type":"exact"},{"name":"unstable protein localization to cell cortex of cell tip during karyogamy","type":"exact"}],"termid":"FYPO:0005990"}


id: GO:0018496
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,6-dihydroxycyclohexane-1-carboxyl-CoA = 2 H+ + 2 e- + 6-oxo-2-hydroxycyclohexane-1-carboxyl-CoA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,6-dihydroxycyclohexane-1-carboxyl-CoA dehydrogenase activity (obsolete GO:0018496)","termid":"GO:0018496"}


id: PBO:0049178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GREB1 like retinoic acid receptor coactivator","termid":"PBO:0049178"}


id: PBO:0083209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified ORF RPC19/YNL113W, an RNA polymerase subunit","termid":"PBO:0083209"}


id: PBO:0085460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Predicted malonyl-CoA:ACP transferase; putative component of a type-II mitochondrial fatty acid synthase that produces intermediates for phospholipid remodeling","termid":"PBO:0085460"}


id: GO:0003872
data:
  {"annotated_genes":["SJAG_00605"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100583],"is_not":false,"summary":null,"term":"GO:0003872"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + D-fructose-6-phosphate = ADP + D-fructose 1,6-bisphosphate.","definition_xrefs":["EC:2.7.1.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphofructokinase activity","termid":"GO:0008443"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00605":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016301","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"6-phosphofructokinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-70467","RHEA:16109","MetaCyc:6PFRUCTPHOS-RXN"],"synonyms":[{"name":"6-phosphofructokinase reduction","type":"exact"},{"name":"6-phosphofructose 1-kinase activity","type":"related"},{"name":"ATP-dependent phosphofructokinase activity","type":"related"},{"name":"ATP:D-fructose-6-phosphate 1-phosphotransferase activity","type":"related"},{"name":"D-fructose-6-phosphate 1-phosphotransferase activity","type":"related"},{"name":"PFK","type":"related"},{"name":"fructose 6-phosphate kinase activity","type":"related"},{"name":"fructose 6-phosphokinase activity","type":"related"},{"name":"nucleotide triphosphate-dependent phosphofructokinase activity","type":"related"},{"name":"phospho-1,6-fructokinase activity","type":"related"},{"name":"phosphofructokinase (phosphorylating)","type":"related"},{"name":"phosphofructokinase I activity","type":"related"},{"name":"phosphohexokinase activity","type":"broad"}],"termid":"GO:0003872","terms_by_termid":{"GO:0003872":null}}


id: PBO:0061876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oocyte secreted protein 1","termid":"PBO:0061876"}


id: PBO:0090655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uracil phosphoribosyltransferase","termid":"PBO:0090655"}


id: PBO:0109040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PET117 pseudogene 1","termid":"PBO:0109040"}


id: PBO:0001282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein","termid":"PBO:0001282"}


id: GO:0051659
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a mitochondrion is maintained in a specific location within a cell and prevented from moving elsewhere.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrion localization","termid":"GO:0051646"},{"relation_name":"is_a","term_name":"maintenance of organelle location","termid":"GO:0051657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"maintenance of mitochondrion location","synonyms":[{"name":"maintenance of mitochondria localization","type":"exact"},{"name":"maintenance of mitochondrion localization","type":"related"}],"termid":"GO:0051659"}


id: PBO:0052162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium inwardly rectifying channel subfamily J member 10","termid":"PBO:0052162"}


id: PBO:0017447
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-participates_in_a_biotic-biotic_interaction_with","termid":"PBO:0017447"}


id: PBO:0079639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2Q2 pseudogene 10","termid":"PBO:0079639"}


id: GO:0006950
data:
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id: GO:0046771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The envelopment of a virus, in which the nucleocapsid evaginates from the host inner nuclear membrane system into the perinuclear space, thus acquiring a membrane envelope.","definition_xrefs":["ISBN:0072370319"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral budding from nuclear membrane","termid":"GO:0046765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral budding from inner nuclear membrane","synonyms":[{"name":"inner nuclear membrane viral budding during viral capsid envelopment","type":"related"},{"name":"viral budding from inner nuclear membrane by viral capsid envelopment","type":"related"},{"name":"viral budding from inner nuclear membrane during viral capsid envelopment","type":"related"},{"name":"virus budding from inner nuclear membrane by viral capsid envelopment","type":"exact"},{"name":"virus budding from inner nuclear membrane during viral capsid envelopment","type":"related"}],"termid":"GO:0046771"}


id: GO:0044359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change in the function of proteins in a second organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of process of another organism","termid":"GO:0035821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of molecular function in another organism","synonyms":[{"name":"modulation of molecular function in other organism","type":"exact"}],"termid":"GO:0044359"}


id: GO:0019598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (R)-mandelate into other compounds, including catechol.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound biosynthetic process","termid":"GO:0009713"},{"relation_name":"is_a","term_name":"mandelate catabolic process","termid":"GO:0019596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"(R)-mandelate catabolic process to catechol","synonyms":[{"name":"(R)-mandelate breakdown to catechol","type":"exact"},{"name":"(R)-mandelate degradation to catechol","type":"exact"}],"termid":"GO:0019598"}


id: PBO:0054664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2070","termid":"PBO:0054664"}


id: GO:0050777
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"negatively_regulates","term_name":"immune response","termid":"GO:0006955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of immune response","synonyms":[{"name":"down regulation of immune response","type":"exact"},{"name":"down-regulation of immune response","type":"exact"},{"name":"downregulation of immune response","type":"exact"},{"name":"inhibition of immune response","type":"narrow"}],"termid":"GO:0050777"}


id: GO:1990825
data:
  {"annotated_genes":["SJAG_00338"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87120],"is_not":false,"summary":null,"term":"GO:1990825"}]},"cv_name":"molecular_function","definition":"Binding to messenger RNA (mRNA) of a specific nucleotide composition or a specific sequence motif.","definition_xrefs":["PMID:11886857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA binding","termid":"GO:0003729"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00338":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"sequence-specific mRNA binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990825","terms_by_termid":{"GO:1990825":null}}


id: PBO:0042802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"choline/ethanolamine phosphotransferase 1","termid":"PBO:0042802"}


id: GO:0043304
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of mast cell degranulation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myeloid leukocyte mediated immunity","termid":"GO:0002886"},{"relation_name":"is_a","term_name":"regulation of leukocyte degranulation","termid":"GO:0043300"},{"relation_name":"regulates","term_name":"mast cell degranulation","termid":"GO:0043303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"regulation of mast cell degranulation","synonyms":[{"name":"regulation of mast cell granule exocytosis","type":"exact"}],"termid":"GO:0043304"}


id: GO:0008718
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor.","definition_xrefs":["RHEA:18125"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors","termid":"GO:0016638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"D-amino-acid dehydrogenase activity","synonyms":[{"name":"D-amino-acid:(acceptor) oxidoreductase (deaminating)","type":"exact"},{"name":"D-amino-acid:acceptor oxidoreductase (deaminating)","type":"exact"}],"termid":"GO:0008718"}


id: MOD:00666
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with an octanoyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylated residue","termid":"MOD:00649"},{"relation_name":"is_a","term_name":"lipoconjugated residue","termid":"MOD:01155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"octanoylated residue","synonyms":[{"name":"OctRes","type":"exact"}],"termid":"MOD:00666"}


id: GO:0160083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an activated T cell acquires specialized features of an exhausted T cell.","definition_xrefs":["PMID:31570879","PMID:21739672"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell differentiation","termid":"GO:0030217"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"exhausted T cell differentiation","synonyms":[{"name":"T cell dysfuction","type":"related"},{"name":"T cell exhaustion","type":"exact"}],"termid":"GO:0160083"}


id: PBO:0004469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KRE9 family cell wall biosynthesis protein (predicted)","termid":"PBO:0004469"}


id: GO:0008456
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D-galactosaminides.","definition_xrefs":["EC:3.2.1.49"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosaminidase activity","termid":"GO:0015929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016798","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"alpha-N-acetylgalactosaminidase activity","secondary_identifiers":["MetaCyc:3.2.1.49-RXN","RHEA:15085"],"synonyms":[{"name":"N-acetyl-alpha-D-galactosaminidase activity","type":"related"},{"name":"N-acetyl-alpha-galactosaminidase activity","type":"related"},{"name":"alpha-N-acetyl-D-galactosaminide N-acetylgalactosaminohydrolase activity","type":"related"},{"name":"alpha-NAGA activity","type":"related"},{"name":"alpha-acetylgalactosaminidase activity","type":"related"},{"name":"alpha-galactosidase B activity","type":"related"}],"termid":"GO:0008456"}


id: PBO:0056188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member A2","termid":"PBO:0056188"}


id: FYPO:0004877
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) is decreased at specific genes that are transcriptionally up-regulated during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased chromatin binding","termid":"FYPO:0002577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707","FYPO:0000702"],"is_obsolete":false,"name":"decreased chromatin binding at mitotically up-regulated genes","synonyms":[{"name":"decreased chromatin binding at mitotically upregulated gene","type":"exact"},{"name":"reduced chromatin binding at mitotically up-regulated genes","type":"exact"}],"termid":"FYPO:0004877"}


id: PBO:0038662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA synthetase bubblegum family member 1","termid":"PBO:0038662"}


id: PR:P40236
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hhp2 gene.","definition_xrefs":["UniProtKB:P40236","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"casein kinase I homolog hhp2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C4.12","synonyms":[{"name":"Spom972h-hhp2","type":"exact"}],"termid":"PR:P40236"}


id: PBO:0050720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 6","termid":"PBO:0050720"}


id: GO:0009911
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of flower development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of flower development","termid":"GO:0009909"},{"relation_name":"is_a","term_name":"positive regulation of post-embryonic development","termid":"GO:0048582"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"flower development","termid":"GO:0009908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of flower development","synonyms":[{"name":"activation of flower development","type":"narrow"},{"name":"stimulation of flower development","type":"narrow"},{"name":"up regulation of flower development","type":"exact"},{"name":"up-regulation of flower development","type":"exact"},{"name":"upregulation of flower development","type":"exact"}],"termid":"GO:0009911"}


id: PBO:0081680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 601, pseudogene","termid":"PBO:0081680"}


id: PR:P09627
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pma1 gene.","definition_xrefs":["UniProtKB:P09627","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane ATPase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1071.10c","synonyms":[{"name":"Spom972h-pma1","type":"exact"},{"name":"proton pump 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P09627"}


id: MOD:00199
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-isoleucine residue to a D-allo-isoleucine.","definition_xrefs":["ChEBI:30007","RESID:AA0192","PubMed:8223491"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 113.084064 Da","termid":"MOD:00306"},{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"},{"relation_name":"is_a","term_name":"modified L-isoleucine residue","termid":"MOD:00910"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-allo-isoleucine","synonyms":[{"name":"(2R,3S)-2-amino-3-methylpentanoic acid","type":"exact"},{"name":"2-azanyl-3-methylpentanoic acid","type":"exact"},{"name":"3-methyl-norvaline","type":"exact"},{"name":"D-Ile","type":"exact"},{"name":"D-allo-isoleucine","type":"exact"},{"name":"D-threo-isoleucine","type":"exact"},{"name":"MOD_RES D-allo-isoleucine","type":"exact"},{"name":"allo-D-isoleucine","type":"exact"},{"name":"alpha-amino-beta-methylvaleric acid","type":"exact"}],"termid":"MOD:00199"}


id: PBO:0076404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 2","termid":"PBO:0076404"}


id: PBO:0049491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A.B variant histone 1","termid":"PBO:0049491"}


id: PR:O43030
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fes1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O43030"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hsp70 nucleotide exchange factor fes1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B9.01","synonyms":[{"name":"Spom972h-fes1","type":"exact"}],"termid":"PR:O43030"}


id: PBO:0061591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurotrophic receptor tyrosine kinase 2","termid":"PBO:0061591"}


id: FYPO:0004152
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of pyridoxal measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular pyridoxal level","synonyms":[{"name":"increased cellular pyridoxal level during mitotic cell cycle","type":"related"},{"name":"increased cellular pyridoxal level during vegetative growth","type":"exact"},{"name":"increased pyridoxal accumulation","type":"related"}],"termid":"FYPO:0004152"}


id: PBO:0002983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine acetyltransferase (predicted)","termid":"PBO:0002983"}


id: GO:0097129
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin D2 and cyclin-dependent kinase 4 (CDK4). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["PMID:15935619","GOC:so"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cyclin D2-CDK4 complex","termid":"GO:0097129"}


id: GO:0014049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the controlled release of glutamate.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glutamate secretion","termid":"GO:0014048"},{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of amino acid transport","termid":"GO:0051957"},{"relation_name":"is_a","term_name":"positive regulation of secretion by cell","termid":"GO:1903532"},{"relation_name":"positively_regulates","term_name":"glutamate secretion","termid":"GO:0014047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of glutamate secretion","synonyms":[{"name":"activation of glutamate secretion","type":"narrow"},{"name":"stimulation of glutamate secretion","type":"narrow"},{"name":"up regulation of glutamate secretion","type":"exact"},{"name":"up-regulation of glutamate secretion","type":"exact"},{"name":"upregulation of glutamate secretion","type":"exact"}],"termid":"GO:0014049"}


id: PBO:0042896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement factor H","termid":"PBO:0042896"}


id: PBO:0049934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HHIP antisense RNA 1","termid":"PBO:0049934"}


id: PBO:0083890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FG-nucleoporin component of central core of the nuclear pore complex; also part of the nuclear pore complex (NPC) cytoplasmic filaments; contributes directly to nucleocytoplasmic transport and maintenance of the NPC permeability barrier and is involved in gene tethering at the nuclear periphery; interacts with Gle1p; human homolog NUP42 can complement yeast mutant","termid":"PBO:0083890"}


id: GO:0071421
data:
  {"annotated_genes":["SJAG_04867","SJAG_04096","SJAG_01007","SJAG_03850"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61034,63618,86732,87223,91377,99912,104795],"is_not":false,"summary":null,"term":"GO:0071421"}]},"cv_name":"biological_process","definition":"A process in which a manganese ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"manganese ion transport","termid":"GO:0006828"},{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transport","termid":"GO:0098655"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01007":null,"SJAG_03850":null,"SJAG_04096":null,"SJAG_04867":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"manganese ion transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"manganese ion membrane transport","type":"exact"},{"name":"transmembrane manganese transport","type":"exact"}],"termid":"GO:0071421","terms_by_termid":{"GO:0071421":null}}


id: FYPO:0001291
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of CDP-diacylglycerol-serine O-phosphatidyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000661","FYPO:0000654","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abnormal CDP-diacylglycerol-serine O-phosphatidyltransferase activity","termid":"FYPO:0001291"}


id: PATO:0001714
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A diameter which is relatively large.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"increased length","termid":"PATO:0000573"},{"relation_name":"is_a","term_name":"diameter","termid":"PATO:0001334"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased diameter","termid":"PATO:0001714"}


id: GO:0090617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in forming the mature 5' end of an mRNA molecule that derives from the mitochondrial genome.","definition_xrefs":["PMID:25181358","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial mRNA processing","termid":"GO:0090615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0140053","GO:0016071","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"mitochondrial mRNA 5'-end processing","termid":"GO:0090617"}


id: PBO:0052443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF2 divergent transcript","termid":"PBO:0052443"}


id: FYPO:0007862
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which centromeres and kinetochores remain associated with the spindle pole body during nuclear division in a that does not form a mitotic spindle or undergo cytokinesis.","definition_xrefs":["PomBase:mah","PomBase:jh","PMID:20967237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"},{"relation_name":"part_of","term_name":"nuclear division in absence of mitotic spindle","termid":"FYPO:0007859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000631","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000337"],"is_obsolete":false,"name":"centromere clustering at nuclear periphery during nuclear division in absence of mitotic spindle","synonyms":[{"name":"abnormal centromere-SPB association at mitosis","type":"related"},{"name":"centromere clustering at nuclear periphery during nuclear division in absence of mitotic spindle during mitotic cell cycle","type":"related"},{"name":"centromere clustering at nuclear periphery during nuclear division in absence of mitotic spindle during vegetative growth","type":"exact"},{"name":"centromere clustering at nuclear periphery during nuclear fission","type":"exact"},{"name":"chromosome SPB attachment during nuclear fission","type":"exact"}],"termid":"FYPO:0007862"}


id: PBO:0068030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 335","termid":"PBO:0068030"}


id: PBO:0085756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase involved in cell proliferation in response to nutrients; glucose-repressible; involved in signal transduction during cell proliferation in response to nutrients, specifically the establishment of stationary phase; identified as a regulator of IME2; phosphorylates Igo1p and Igo2p; substrate of Pho80p-Pho85p kinase","termid":"PBO:0085756"}


id: GO:0019044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The perpetuation of a latent state, generally by repressing the viruses own lytic genes expression and ensuring expression of viral genes which function to keep the viral genome from being detected by the host defense mechanisms.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral latency","termid":"GO:0019042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of viral latency","secondary_identifiers":["GO:0032360","GO:0075716"],"synonyms":[{"name":"latent virus maintenance","type":"exact"},{"name":"prophage maintenance","type":"exact"},{"name":"provirus maintenance","type":"exact"}],"termid":"GO:0019044"}


id: GO:2000534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of renal albumin absorption.","definition_xrefs":["GOC:obol","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of renal albumin absorption","termid":"GO:2000532"},{"relation_name":"positively_regulates","term_name":"renal albumin absorption","termid":"GO:0097018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of renal albumin absorption","termid":"GO:2000534"}


id: GO:0090289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the multiplication or reproduction of osteoclasts, resulting in the expansion of an osteoclast cell population.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte proliferation","termid":"GO:0070663"},{"relation_name":"regulates","term_name":"osteoclast proliferation","termid":"GO:0002158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of osteoclast proliferation","termid":"GO:0090289"}


id: PBO:0003898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene, DUF1773 family","termid":"PBO:0003898"}


id: PBO:0042314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD28 molecule","termid":"PBO:0042314"}


id: PBO:0113532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar membrane polyphosphate polymerase; subunit of vacuolar transporter chaperone (VTC) complex involved in synthesis and transfer of polyP to vacuole; regulates membrane trafficking; role in non-autophagic vacuolar fusion; targeted to vacuole via AP-3 pathway; protein abundance increases in response to DNA replication stress","termid":"PBO:0113532"}


id: GO:0004410
data:
  {"annotated_genes":["SJAG_04688"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98016],"is_not":false,"summary":null,"term":"GO:0004410"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + acetyl-CoA + H2O = CoA + H+ + homocitrate.","definition_xrefs":["RHEA:12929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, acyl groups converted into alkyl on transfer","termid":"GO:0046912"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04688":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"homocitrate synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:HOMOCITRATE-SYNTHASE-RXN","EC:2.3.3.14","KEGG_REACTION:R00271"],"synonyms":[{"name":"2-hydroxybutane-1,2,4-tricarboxylate 2-oxoglutarate-lyase (CoA- acetylating) activity","type":"related"},{"name":"2-hydroxybutane-1,2,4-tricarboxylate 2-oxoglutarate-lyase (CoA-acetylating)","type":"related"},{"name":"acetyl-CoA:2-oxoglutarate C-acetyltransferase (thioester-hydrolysing, carboxymethyl forming)","type":"related"},{"name":"acetyl-coenzyme A:2-ketoglutarate C-acetyl transferase activity","type":"related"},{"name":"homocitrate synthetase activity","type":"related"}],"termid":"GO:0004410","terms_by_termid":{"GO:0004410":null}}


id: PBO:0047728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fructosamine 3 kinase","termid":"PBO:0047728"}


id: PBO:0068225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 532","termid":"PBO:0068225"}


id: PBO:0072051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 21","termid":"PBO:0072051"}


id: GO:0036515
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemotaxis process that directs the migration of an axon growth cone of a serotonergic neuron to a specific target site in response to a combination of attractive and repulsive cues.","definition_xrefs":["GOC:PARL","PMID:21106844","GOC:bf","CL:0000850"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axon guidance","termid":"GO:0007411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"serotonergic neuron axon guidance","synonyms":[{"name":"5-HT axon guidance","type":"exact"},{"name":"serotonergic axon guidance","type":"exact"}],"termid":"GO:0036515"}


id: PBO:0050405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein C pseudogene 7","termid":"PBO:0050405"}


id: PBO:0065774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaminyl-peptide cyclotransferase like","termid":"PBO:0065774"}


id: MOD:00647
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to either N-acetyl-L-serine, O-acetyl-L-serine, or N,O-diacetyl-L-serine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylated residue","termid":"MOD:00394"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"acetylated L-serine","synonyms":[{"name":"AcSer","type":"exact"}],"termid":"MOD:00647"}


id: PBO:0029949
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_tyrosine_phosphorylation","termid":"PBO:0029949"}


id: GO:0039542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the rate or extent of K63-linked ubiquitination of RIG-I (also known as DDX58), thereby suppressing RIG-I signal transduction. Lys63-linked ubiquitination of the N-terminal CARD domains of RIG-I is crucial for the cytosolic RIG-I signaling pathway to elicit host antiviral innate immunity.","definition_xrefs":["PMID:21890623","PMID:19454348"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host RIG-I K63-linked ubiquitination (obsolete GO:0039542)","synonyms":[{"name":"inhibition by virus of TRIM25-mediated ubiquitination of host RIG-I","type":"exact"},{"name":"inhibition by virus of host DDX58 K63-linked ubiquitination","type":"exact"},{"name":"inhibition by virus of host RIG-I activity by inhibition of RIG-I ubiquitination","type":"broad"}],"termid":"GO:0039542"}


id: GO:0019203
data:
  {"annotated_genes":["SJAG_02713","SJAG_05314","SJAG_00685","SJAG_01646","SJAG_01862","SJAG_00039"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74896,85726,85007,96028],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004331"},{"annotations":[87876,93209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004805"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: carbohydrate phosphate + H2O = carbohydrate + phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00039":null,"SJAG_00685":null,"SJAG_01646":null,"SJAG_01862":null,"SJAG_02713":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"carbohydrate phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-3781011","Reactome:R-HSA-3781018","Reactome:R-HSA-3791349"],"termid":"GO:0019203","terms_by_termid":{"GO:0004331":null,"GO:0004805":null}}


id: GO:0018074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The bromination of peptidyl-histidine to form peptidyl-L-bromohistidine; the position of the bromine substitution is unknown.","definition_xrefs":["RESID:AA0173"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-histidine bromination (obsolete GO:0018074)","termid":"GO:0018074"}


id: PR:O94627
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1347.08c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94627"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease H2 subunit B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1347.08c","synonyms":[{"name":"RNase H(202) (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNase H2 subunit B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Rnh2B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPBC1347.08c","type":"exact"},{"name":"ribonuclease HI subunit B (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94627"}


id: GO:0045133
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-dihydroxybenzoate + O2 = 2-hydroxy-3-(3-oxoprop-1-enyl)but-2-enedioate + H+.","definition_xrefs":["EC:1.13.11.14","RHEA:18477"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"2,3-dihydroxybenzoate 3,4-dioxygenase activity","secondary_identifiers":["MetaCyc:1.13.11.14-RXN","KEGG_REACTION:R01507"],"synonyms":[{"name":"2,3-dihydroxybenzoate 1,2-dioxygenase activity","type":"related"},{"name":"2,3-dihydroxybenzoate oxygenase activity","type":"related"},{"name":"2,3-dihydroxybenzoate:oxygen 3,4-oxidoreductase (decyclizing)","type":"related"},{"name":"2,3-dihydroxybenzoic oxygenase activity","type":"related"},{"name":"o-pyrocatechuate oxygenase activity","type":"related"}],"termid":"GO:0045133"}


id: PBO:0075912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST13, Hsp70 interacting protein pseudogene 4","termid":"PBO:0075912"}


id: PBO:0003396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein Gap1","termid":"PBO:0003396"}


id: PR:Q9P7S4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- taf4 gene.","definition_xrefs":["UniProtKB:Q9P7S4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription initiation factor TFIID subunit 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23G3.09","synonyms":[{"name":"Spom972h-taf4","type":"exact"},{"name":"TBP-associated factor 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7S4"}


id: GO:0021674
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of rhombomere 8 is generated and organized. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in an anterior to posterior order.","definition_xrefs":["GOC:cls","GOC:curators","GOC:jid","GOC:dgh","GO_REF:0000021","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere morphogenesis","termid":"GO:0021593"},{"relation_name":"part_of","term_name":"rhombomere 8 development","termid":"GO:0021574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 8 morphogenesis","termid":"GO:0021674"}


id: GO:0070336
data:
  {"annotated_genes":["SJAG_01076","SJAG_03994","SJAG_03780","SJAG_04671","SJAG_04752"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90777,99304,108679,112990],"is_not":false,"summary":null,"term":"GO:0070336"},{"annotations":[95444],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070337"}]},"cv_name":"molecular_function","definition":"Binding to a flap structure in DNA. A DNA flap structure is one in which a single-stranded length of DNA or RNA protrudes from a double-stranded DNA molecule.","definition_xrefs":["GOC:mah","PMID:15189154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA binding","termid":"GO:0003677"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01076":null,"SJAG_03780":null,"SJAG_03994":null,"SJAG_04671":null,"SJAG_04752":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"flap-structured DNA binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070336","terms_by_termid":{"GO:0070336":null,"GO:0070337":null}}


id: PBO:0059295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L45 pseudogene 1","termid":"PBO:0059295"}


id: PBO:0000843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RCC domain protein Ats1 (predicted)","termid":"PBO:0000843"}


id: PBO:0113064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Paf1p complex; binds to and modulates the activity of RNA polymerases I and II; required for expression of certain genes, modification of some histones, and telomere maintenance; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay; role in preventing L-A mycovirus pathogenesis; protein abundance increases in response to DNA replication stress; human homolog, parafibromin, is a tumour suppressor linked to breast, renal and gastric cancers","termid":"PBO:0113064"}


id: PBO:0044380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYP1B1 antisense RNA 1","termid":"PBO:0044380"}


id: GO:0022876
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + galactosamine(out) = protein histidine + galactosamine phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"},{"relation_name":"is_a","term_name":"galactosamine transmembrane transporter activity","termid":"GO:0019196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0022857","GO:0016740","GO:0005215","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-galactosamine phosphotransferase system transporter activity","synonyms":[{"name":"galactosamine PTS transporter activity","type":"exact"}],"termid":"GO:0022876"}


id: FYPO:0004603
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an inviable cell that does not divide and is elongated.","definition_xrefs":["PomBase:mah","PMID:7957061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable elongated vegetative cell","termid":"FYPO:0001490"},{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division","termid":"FYPO:0001991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000004","FYPO:0000005","FYPO:0001320"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, elongated cell","synonyms":[{"name":"inviable following spore germination, without cell division, elongated cell","type":"exact"},{"name":"inviable germinated spore, without cell division, elongated cell","type":"exact"},{"name":"lethal after spore germination, without cell division, elongated cell","type":"exact"}],"termid":"FYPO:0004603"}


id: GO:0004463
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + leukotriene A(4) = leukotriene B(4).","definition_xrefs":["EC:3.3.2.6","RHEA:22324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether hydrolase activity","termid":"GO:0016803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"leukotriene-A4 hydrolase activity","secondary_identifiers":["MetaCyc:LEUKOTRIENE-A4-HYDROLASE-RXN","Reactome:R-HSA-266072","KEGG_REACTION:R03057"],"synonyms":[{"name":"(7E,9E,11Z,14Z)-(5S,6S)-5,6-epoxyicosa-7,9,11,14-tetraenoate hydrolase activity","type":"related"},{"name":"LTA-4 hydrolase activity","type":"related"},{"name":"LTA4 hydrolase activity","type":"related"},{"name":"LTA4H","type":"related"},{"name":"leukotriene A(4) hydrolase activity","type":"related"},{"name":"leukotriene A4 hydrolase activity","type":"related"}],"termid":"GO:0004463"}


id: PBO:0046585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 27","termid":"PBO:0046585"}


id: PBO:0045232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C19","termid":"PBO:0045232"}


id: PBO:0056407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane associated ring-CH-type finger 5","termid":"PBO:0056407"}


id: PBO:0067504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 644, pseudogene","termid":"PBO:0067504"}


id: PBO:0000082
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"new gene","termid":"PBO:0000082"}


id: GO:0072766
data:
  {"annotated_genes":["SJAG_01745","SJAG_00727","SJAG_02737","SJAG_05196"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85625,87364,98920,113118],"is_not":false,"summary":null,"term":"GO:0072766"}]},"cv_name":"biological_process","definition":"The process in which chromatin, or kinetochores are anchored to the nuclear envelope. This process involves the microtubule cytoskeleton, and nuclear tethering factors and is responsible for the Rabl-like configuration of chromosomes in the interphase nuclei.","definition_xrefs":["GOC:mah","GOC:vw","PMID:23166349","PMID:21965289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome attachment to the nuclear envelope","termid":"GO:0097240"},{"relation_name":"is_a","term_name":"centromere clustering","termid":"GO:0098653"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00727":null,"SJAG_01745":null,"SJAG_02737":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0007049","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"centromere clustering at the mitotic interphase nuclear envelope","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"centromere clustering at the mitotic nuclear envelope","type":"related"},{"name":"centromere clustering at the nuclear periphery","type":"broad"},{"name":"centromere-SPB clustering","type":"broad"},{"name":"kinetochore clustering at SPB","type":"broad"},{"name":"kinetochore clustering at spindle pole body","type":"broad"},{"name":"kinetochore clustering at the old mitotic spindle pole body","type":"exact"},{"name":"kinetochore localization at spindle pole body","type":"broad"},{"name":"rabl configuration","type":"related"}],"termid":"GO:0072766","terms_by_termid":{"GO:0072766":null}}


id: FYPO:0002865
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to polypeptone. Cells stop growing (and may die) at a concentration of polypeptone that allows wild type cells to grow. Polypeptone is a mixture of peptones made up of equal parts of pancreatic digest of casein and peptic digest of animal used in media.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0002683","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to polypeptone","synonyms":[{"name":"hypersensitive to polypeptone","type":"exact"},{"name":"sensitive to polypeptone during mitotic cell cycle","type":"related"},{"name":"sensitive to polypeptone during vegetative growth","type":"exact"}],"termid":"FYPO:0002865"}


id: FYPO:0000432
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of fermentation is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal fermentation","termid":"FYPO:0000430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased fermentation","synonyms":[{"name":"decreased fermentation during mitotic cell cycle","type":"related"},{"name":"decreased fermentation during vegetative growth","type":"exact"},{"name":"decreased fermentative metabolism","type":"exact"},{"name":"fermentative metabolism: decreased","type":"related"},{"name":"reduced fermentation","type":"exact"}],"termid":"FYPO:0000432"}


id: PR:P78774
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An actin-related protein 2/3 complex subunit 1A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03179"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-related protein 2/3 complex subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14C8.06","secondary_identifiers":["UniProtKB:P78774"],"synonyms":[{"name":"Spom972h-ARPC1A","type":"exact"},{"name":"arp2/3 complex 41 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"p41-ARC (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78774"}


id: PBO:0034239
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-target_participant_in","termid":"PBO:0034239"}


id: PBO:0038414
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_o_transports_or_maintains_localization_of","termid":"PBO:0038414"}


id: GO:0016822
data:
  {"annotated_genes":["SJAG_00493"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102895],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0018773"},{"annotations":[102896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047621"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of any acid carbon-carbon bond.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity","termid":"GO:0016787"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00493":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"hydrolase activity, acting on acid carbon-carbon bonds","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:3.7.-.-"],"termid":"GO:0016822","terms_by_termid":{"GO:0018773":null,"GO:0047621":null}}


id: PBO:0087033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L16A; N-terminally acetylated, binds 5.8 S rRNA; transcriptionally regulated by Rap1p; homologous to mammalian ribosomal protein L13A and bacterial L13; RPL16A has a paralog, RPL16B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress","termid":"PBO:0087033"}


id: GO:0018260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of phospho-guanosine to a protein amino acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein nucleotidylation","termid":"GO:0018175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein guanylylation","synonyms":[{"name":"protein amino acid guanylylation","type":"exact"}],"termid":"GO:0018260"}


id: GO:0035666
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a toll-like receptor where the TRIF adaptor mediates transduction of the signal. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate an innate immune response.","definition_xrefs":["PMID:12855817","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MyD88-independent toll-like receptor signaling pathway","termid":"GO:0002756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"TRIF-dependent toll-like receptor signaling pathway","synonyms":[{"name":"TRIF-dependent TLR signaling pathway","type":"exact"},{"name":"TRIF-dependent toll-like receptor signalling pathway","type":"exact"},{"name":"Toll/IL-1 receptor (TIR) domain-containing adaptor-dependent TLR signaling pathway","type":"exact"}],"termid":"GO:0035666"}


id: MOD:01678
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively coverts L-lysine to N6-carbamoyl-L-lysine.","definition_xrefs":["DeltaMass:56","OMSSA:31","PubMed:12203680","PubMed:10978403","Unimod:5#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbamoylated residue","termid":"MOD:00398"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6-carbamoyl-L-lysine","synonyms":[{"name":"2-amino-6-ureido-hexanoic acid","type":"exact"},{"name":"Carbamyl","type":"related"},{"name":"Carbamylation","type":"related"},{"name":"N6-(aminocarbonyl)-L-lysine","type":"exact"},{"name":"N6CbmLys","type":"exact"},{"name":"carbamylk","type":"exact"},{"name":"homocitrulline","type":"exact"}],"termid":"MOD:01678"}


id: PBO:0082451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2H2-type zinc finger protein required for ribosome assembly; shuttling factor which associates with pre-60S particles in the nucleus, accompanying them to the cytoplasm; cytoplasmic dissociation of Bud20p requires Drg1p; N-terminus harbors a nuclear localization signal (NLS) and a nuclear export signal (NES); cytoplasmic Bud20p is reimported by Kap123-dependent pathway; involved in bud-site selection; diploid mutants display a random budding pattern; similar to human ZNF593","termid":"PBO:0082451"}


id: PBO:0013746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protoporphyrinogen oxidase Hem14 (predicted)","termid":"PBO:0013746"}


id: PBO:0028979
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_population_growth_on_methionine_sulfur_source","termid":"PBO:0028979"}


id: PBO:0059031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MMP20 antisense RNA 1","termid":"PBO:0059031"}


id: PBO:0050408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein C pseudogene 10","termid":"PBO:0050408"}


id: FYPO:0000945
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is shaped in the form of a spheroid, and has a larger volume than normal. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"spheroid vegetative cell","termid":"FYPO:0000021"},{"relation_name":"has_part","term_name":"swollen vegetative cell","termid":"FYPO:0000646"},{"relation_name":"is_a","term_name":"spheroid vegetative cell","termid":"FYPO:0000021"},{"relation_name":"is_a","term_name":"swollen vegetative cell","termid":"FYPO:0000646"},{"relation_name":"is_a","term_name":"swollen spheroid cell","termid":"FYPO:0002941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"swollen spheroid vegetative cell","synonyms":[{"name":"enlarged spheroid vegetative cell","type":"related"},{"name":"enlarged volume spheroid vegetative cell","type":"exact"},{"name":"large spheroid vegetative cell","type":"related"},{"name":"spheroid vegetative cell with increased cell size","type":"related"},{"name":"spheroid vegetative cell with increased cell volume","type":"exact"},{"name":"swollen rounded vegetative cell","type":"exact"},{"name":"swollen spheroid cell during vegetative growth","type":"exact"},{"name":"swollen spheroid vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000945"}


id: FYECO:0000323
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Cells were cold shocked followed by recovery at a temperature range higher than normal for standard pombe growth.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping sequential growth conditions","termid":"FYECO:0000094"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cold shock and recovery at high temperature","termid":"FYECO:0000323"}


id: PBO:0003164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex subunit Apc1","termid":"PBO:0003164"}


id: GO:0102117
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gibberellin A9 + S-adenosyl-L-methionine = gibberellin A9 methyl ester + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz","EC:2.1.1.275"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"gibberellin A9 carboxyl methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-11358","RHEA:36119"],"termid":"GO:0102117"}


id: PATO:0000545
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000545 relative photosensitivity value (obsolete PATO:0000545)","termid":"PATO:0000545"}


id: GO:0102695
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose + cis-zeatin = H+ + cis-zeatin-7-N-glucoside + UDP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete UDP-glucose:cis-zeatin 7-N-glucosyltransferase activity (obsolete GO:0102695)","termid":"GO:0102695"}


id: PBO:0070984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L19 pseudogene 8","termid":"PBO:0070984"}


id: PBO:0070903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 11","termid":"PBO:0070903"}


id: GO:0090087
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"peptide transport","termid":"GO:0015833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of peptide transport","termid":"GO:0090087"}


id: GO:0002715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of natural killer cell mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lymphocyte mediated immunity","termid":"GO:0002706"},{"relation_name":"is_a","term_name":"regulation of innate immune response","termid":"GO:0045088"},{"relation_name":"regulates","term_name":"natural killer cell mediated immunity","termid":"GO:0002228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of natural killer cell mediated immunity","secondary_identifiers":["GO:0045845"],"synonyms":[{"name":"regulation of NK cell mediated immunity","type":"exact"},{"name":"regulation of natural killer cell activity","type":"related"}],"termid":"GO:0002715"}


id: PBO:0083822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential subunit of the Dam1 complex (aka DASH complex); complex couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; is transferred to the kinetochore prior to mitosis","termid":"PBO:0083822"}


id: GO:0102162
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 8'-apo-beta,psi-caroten-8'-al + O2 = all-trans-retinal + 2,6-dimethylocta-2,4,6-trienedial.","definition_xrefs":["GOC:pz","EC:1.13.11.75"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"all-trans-8'-apo-beta-carotenal 15,15'-oxygenase activity","secondary_identifiers":["RHEA:26385","MetaCyc:RXN-11783"],"termid":"GO:0102162"}


id: PBO:0070860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13 pseudogene 13","termid":"PBO:0070860"}


id: PBO:0040779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bet1 golgi vesicular membrane trafficking protein","termid":"PBO:0040779"}


id: PBO:0090692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIH complex subunit Tfb6","termid":"PBO:0090692"}


id: PBO:0087112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosome-associated chaperone; zuotin functions in ribosome biogenesis and as a chaperone for nascent polypeptide chains in partnership with Ssz1p and SSb1/2; contains a DnaJ domain and functions as a J-protein partner for Ssb1p and Ssb2p; human gene DNAJC2 can partially complement yeast zuo1 null mutant","termid":"PBO:0087112"}


id: PBO:0049112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 174","termid":"PBO:0049112"}


id: PBO:0082081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-methylthioribose-1-phosphate isomerase; catalyzes the isomerization of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate in the methionine salvage pathway","termid":"PBO:0082081"}


id: PBO:0072756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S100A11 pseudogene 6","termid":"PBO:0072756"}


id: PBO:0082473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calpain-like cysteine protease; involved in proteolytic activation of Rim101p in response to alkaline pH; localizes to punctate structures in alkaline conditions and in vps4 mutant; has similarity to A. nidulans palB","termid":"PBO:0082473"}


id: PBO:0003701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HMG box protein","termid":"PBO:0003701"}


id: PBO:0017544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, G-patch type, splicing factor 45 ortholog (predicted)","termid":"PBO:0017544"}


id: GO:2000801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endocardial cushion to mesenchymal transition involved in heart valve formation.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of endocardial cushion to mesenchymal transition","termid":"GO:0140050"},{"relation_name":"is_a","term_name":"regulation of endocardial cushion to mesenchymal transition involved in heart valve formation","termid":"GO:2000800"},{"relation_name":"negatively_regulates","term_name":"endocardial cushion to mesenchymal transition involved in heart valve formation","termid":"GO:0003199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of endocardial cushion to mesenchymal transition involved in heart valve formation","synonyms":[{"name":"negative regulation of endocardial cushion to mesenchymal transition involved in valve formation","type":"exact"}],"termid":"GO:2000801"}


id: PBO:0033755
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_spindle_pole_body_organization","termid":"PBO:0033755"}


id: GO:0015850
data:
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id: GO:2000612
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id: PBO:0113757
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id: FYPO:0008134
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id: GO:0045786
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id: PBO:0029339
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id: PBO:0005366
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id: RO:0009001
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id: PBO:0049185
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id: GO:0001561
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id: SO:0002045
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id: PBO:0064929
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id: GO:0051016
data:
  {"annotated_genes":["SJAG_02700","SJAG_01993","SJAG_00279","SJAG_01894"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84292,88347,94973,110477],"is_not":false,"summary":null,"term":"GO:0051016"}]},"cv_name":"biological_process","definition":"The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits.","definition_xrefs":["ISBN:071673706X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament capping","termid":"GO:0051693"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_01894":null,"SJAG_01993":null,"SJAG_02700":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"negatively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0030036","GO:0065003","GO:0044085","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"barbed-end actin filament capping","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"barbed-end F-actin capping activity","type":"exact"},{"name":"barbed-end actin capping activity","type":"exact"},{"name":"plus-end F-actin capping activity","type":"exact"},{"name":"plus-end actin filament capping activity","type":"exact"}],"termid":"GO:0051016","terms_by_termid":{"GO:0051016":null}}


id: GO:0052512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The increase by an organism of the levels of hormones or growth regulators in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of hormone or growth regulator levels in symbiont (obsolete GO:0052512)","synonyms":[{"name":"positive modulation of hormone or growth regulator levels in symbiont","type":"exact"},{"name":"positive regulation by organism of hormone or growth regulator levels in symbiont","type":"exact"}],"termid":"GO:0052512"}


id: GO:0102302
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + mycinamicin VI = S-adenosyl-L-homocysteine + mycinamicin III(1+) + H+.","definition_xrefs":["EC:2.1.1.238","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"mycinamicin VI 2''-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-12801","RHEA:31643"],"termid":"GO:0102302"}


id: PBO:0082386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta 6 subunit of the 20S proteasome","termid":"PBO:0082386"}


id: PBO:0088335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L22","termid":"PBO:0088335"}


id: FYPO:0004131
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of succinate dehydrogenase (ubiquinone) activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal succinate dehydrogenase (ubiquinone) activity","termid":"FYPO:0003322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"increased succinate dehydrogenase (ubiquinone) activity","termid":"FYPO:0004131"}


id: GO:0034944
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA + NAD+ = 2,6-dimethyl-5-methylene-3-oxo-heptanoyl-CoA + NADH+ + H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA dehydrogenase activity (obsolete GO:0034944)","termid":"GO:0034944"}


id: PBO:0035893
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_protein_modification_during_vegetative_growth","termid":"PBO:0035893"}


id: GO:1905245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of aspartic-type peptidase activity.","definition_xrefs":["PMID:21745575","GOC:TermGenie","GO_REF:0000059","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of peptidase activity","termid":"GO:0052547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of aspartic-type peptidase activity","termid":"GO:1905245"}


id: GO:0001308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process, which occurs as a dividing cell ages, leading to expression of genes that are typically not expressed due to silencing by regulatory proteins.","definition_xrefs":["GOC:jh","PMID:12044934"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of chromatin silencing involved in replicative cell aging (obsolete GO:0001308)","synonyms":[{"name":"loss of chromatin silencing during replicative cell ageing","type":"related"},{"name":"loss of chromatin silencing involved in replicative cell aging","type":"exact"}],"termid":"GO:0001308"}


id: PBO:0077238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane and coiled-coil domain family 3","termid":"PBO:0077238"}


id: PBO:0040089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase family member I","termid":"PBO:0040089"}


id: PBO:0039843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGAP11A-SCG5 readthrough","termid":"PBO:0039843"}


id: GO:0015111
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of iodide ions from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion transmembrane transporter activity","termid":"GO:0008509"},{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"iodide transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-5627802","Reactome:R-HSA-209910","Reactome:R-HSA-5627870"],"termid":"GO:0015111"}


id: GO:0002491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.","definition_xrefs":["PMID:15531770","GOC:add","PMID:16181338"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous peptide antigen","termid":"GO:0002483"},{"relation_name":"is_a","term_name":"antigen processing and presentation of peptide antigen via MHC class II","termid":"GO:0002495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous peptide antigen via MHC class II","synonyms":[{"name":"endogenous peptide antigen processing and presentation via MHC class II","type":"exact"}],"termid":"GO:0002491"}


id: PBO:0069686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 965, pseudogene","termid":"PBO:0069686"}


id: PBO:0081694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 616","termid":"PBO:0081694"}


id: GO:0018343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a farnesyl group to a protein.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein prenylation","termid":"GO:0018342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein farnesylation","secondary_identifiers":["GO:0018347"],"synonyms":[{"name":"C-terminal protein farnesylation","type":"narrow"},{"name":"protein amino acid farnesylation","type":"exact"}],"termid":"GO:0018343"}


id: PBO:0051625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inflammation and lipid regulator with UBA-like and NBR1-like domains","termid":"PBO:0051625"}


id: FYPO:0007769
data:
  {"alleles_by_uniquename":{"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115692],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007770"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which heterochromatin tethering at the nuclear periphery persists after the onset of mitosis. Normally, heterochromatic parts of chromosomes, such as centromeres and telomeres, are maintained at the nuclear periphery during interphase and released during mitosis.","definition_xrefs":["PMID:32109380","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal heterochromatin tethering at nuclear periphery","termid":"FYPO:0007768"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03892":null},"genotype_count":1,"genotypes_by_uniquename":{"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"increased heterochromatin tethering at nuclear periphery during mitosis","references_by_uniquename":{"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_03892"],"single_locus_genotype_uniquenames":["vps4delta"],"synonyms":[{"name":"increased heterochromatin anchoring at nuclear periphery during mitosis","type":"exact"},{"name":"increased heterochromatin tethering at nuclear periphery during mitosis during mitotic cell cycle","type":"related"},{"name":"increased heterochromatin tethering at nuclear periphery during mitosis during vegetative growth","type":"exact"},{"name":"increased heterochromatin tethering at nuclear periphery during mitotic M phase","type":"related"},{"name":"increased heterochromatin tethering at nuclear periphery during mitotic nuclear division","type":"exact"}],"termid":"FYPO:0007769","terms_by_termid":{"FYPO:0007770":null,"FYPO_EXT:0000001":null}}


id: PR:P50530
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sck1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P50530"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase sck1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B9.02c","synonyms":[{"name":"Spom972h-sck1","type":"exact"}],"termid":"PR:P50530"}


id: GO:0051305
data:
  {"annotated_genes":["SJAG_02814","SJAG_00794","SJAG_03683","SJAG_01805","SJAG_03540","SJAG_01613","SJAG_01297","SJAG_02761","SJAG_02336","SJAG_02624","SJAG_04076"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114317],"is_not":false,"summary":null,"term":"GO:0051305"},{"annotations":[112090,95300,91359,96463,114319,89836,98532,114836,105276],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990571"},{"annotations":[100010,104386,96465],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007079"}]},"cv_name":"biological_process","definition":"The directed movement of chromosomes in the center of the spindle towards the spindle poles, mediated by the shortening of microtubules attached to the chromosomes.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule-based movement","termid":"GO:0007018"},{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"chromosome localization","termid":"GO:0050000"},{"relation_name":"part_of","term_name":"nuclear chromosome segregation","termid":"GO:0098813"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00794":null,"SJAG_01297":null,"SJAG_01613":null,"SJAG_01805":null,"SJAG_02336":null,"SJAG_02624":null,"SJAG_02761":null,"SJAG_02814":null,"SJAG_03540":null,"SJAG_03683":null,"SJAG_04076":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"chromosome movement towards spindle pole","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"chromosome migration to spindle pole","type":"exact"},{"name":"chromosome movement","type":"broad"},{"name":"chromosome movement to spindle pole","type":"exact"}],"termid":"GO:0051305","terms_by_termid":{"GO:0007079":null,"GO:0051305":null,"GO:1990571":null}}


id: FYPO:0006435
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of FAD binding by a gene product (usually a protein) in a mutant is increased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"increased FAD binding","synonyms":[{"name":"increased oxidized flavin adenine dinucleotide binding","type":"exact"}],"termid":"FYPO:0006435"}


id: GO:0048318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the axial mesoderm over time, from its formation to the mature structure. The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesoderm development","termid":"GO:0007498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axial mesoderm development","termid":"GO:0048318"}


id: GO:1901339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of store-operated calcium channel activity.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of calcium ion transmembrane transporter activity","termid":"GO:1901019"},{"relation_name":"is_a","term_name":"regulation of cation channel activity","termid":"GO:2001257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of store-operated calcium channel activity","termid":"GO:1901339"}


id: PBO:0077883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin polymerization promoting protein family member 3","termid":"PBO:0077883"}


id: PBO:0046425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPH receptor A10","termid":"PBO:0046425"}


id: FYPO:0004268
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of septum disassembly is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum disassembly","termid":"FYPO:0000132"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased septum disassembly","synonyms":[{"name":"decreased septum disassembly during mitotic cell cycle","type":"related"},{"name":"decreased septum disassembly during vegetative growth","type":"exact"},{"name":"reduced septum disassembly","type":"exact"}],"termid":"FYPO:0004268"}


id: PBO:0004828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk22 (predicted)","termid":"PBO:0004828"}


id: PBO:0027759
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mislocalized_protein_during_meiotic_cell_cycle","termid":"PBO:0027759"}


id: PBO:0042546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 11A","termid":"PBO:0042546"}


id: PBO:0076587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 9B","termid":"PBO:0076587"}


id: PBO:0005488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2B Htb1","termid":"PBO:0005488"}


id: GO:0005879
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A microtubule in the axoneme of a eukaryotic cilium or flagellum; an axoneme contains nine modified doublet microtubules, which may or may not surround a pair of single microtubules.","definition_xrefs":["ISBN:0815316194","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic microtubule","termid":"GO:0005881"},{"relation_name":"part_of","term_name":"axoneme","termid":"GO:0005930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0015630","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"axonemal microtubule","termid":"GO:0005879"}


id: PBO:0081614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 542, pseudogene","termid":"PBO:0081614"}


id: PBO:0108511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 and Rpd3L histone deacetylase complex subunit Sds3","termid":"PBO:0108511"}


id: PBO:0075548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPECC1 pseudogene 2","termid":"PBO:0075548"}


id: GO:0035699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a T-helper 17 cell from the blood vessels into the surrounding tissue.","definition_xrefs":["CL:0000899","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"helper T cell extravasation","termid":"GO:0035684"},{"relation_name":"is_a","term_name":"CD8-positive, alpha-beta T cell extravasation","termid":"GO:0035697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T-helper 17 cell extravasation","termid":"GO:0035699"}


id: GO:0010770
data:
  {"annotated_genes":["SJAG_03581","SJAG_02392","SJAG_00514"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85895,90620,91900],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of cell morphogenesis contributing to cell differentiation. Cell morphogenesis involved in differentiation is the change in form (cell shape and size) that occurs when relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell development","termid":"GO:0010720"},{"relation_name":"is_a","term_name":"regulation of cell morphogenesis","termid":"GO:0022604"},{"relation_name":"positively_regulates","term_name":"cell morphogenesis","termid":"GO:0000902"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_02392":null,"SJAG_03581":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell morphogenesis","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010770","terms_by_termid":{"GO:0051519":null}}


id: PBO:0055046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2461","termid":"PBO:0055046"}


id: GO:0009103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.","definition_xrefs":["GOC:mr","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide biosynthetic process","termid":"GO:0000271"},{"relation_name":"is_a","term_name":"lipid biosynthetic process","termid":"GO:0008610"},{"relation_name":"is_a","term_name":"lipopolysaccharide metabolic process","termid":"GO:0008653"},{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"lipopolysaccharide biosynthetic process","secondary_identifiers":["KEGG_PATHWAY:map00540"],"synonyms":[{"name":"LPS biosynthetic process","type":"exact"},{"name":"lipopolysaccharide anabolism","type":"exact"},{"name":"lipopolysaccharide biosynthesis","type":"exact"},{"name":"lipopolysaccharide formation","type":"exact"},{"name":"lipopolysaccharide synthesis","type":"exact"}],"termid":"GO:0009103"}


id: PBO:0079590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 D3 pseudogene 2","termid":"PBO:0079590"}


id: PBO:0077722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNR intronic transcript 1","termid":"PBO:0077722"}


id: GO:0031668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular response to extracellular stimulus (obsolete GO:0031668)","termid":"GO:0031668"}


id: PBO:0063042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatase domain containing paladin 1","termid":"PBO:0063042"}


id: PBO:0055908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 32","termid":"PBO:0055908"}


id: GO:0050835
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The incorporation of iron into a 4Fe-4S iron-sulfur cluster via tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide.","definition_xrefs":["RESID:AA0356"],"gene_count":0,"genotype_count":0,"name":"obsolete iron incorporation into iron-sulfur cluster via tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide (obsolete GO:0050835)","termid":"GO:0050835"}


id: GO:0002887
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of myeloid leukocyte mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte mediated immunity","termid":"GO:0002704"},{"relation_name":"is_a","term_name":"regulation of myeloid leukocyte mediated immunity","termid":"GO:0002886"},{"relation_name":"negatively_regulates","term_name":"myeloid leukocyte mediated immunity","termid":"GO:0002444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of myeloid leukocyte mediated immunity","synonyms":[{"name":"down regulation of myeloid leukocyte mediated immunity","type":"exact"},{"name":"down-regulation of myeloid leukocyte mediated immunity","type":"exact"},{"name":"downregulation of myeloid leukocyte mediated immunity","type":"exact"},{"name":"inhibition of myeloid leukocyte mediated immunity","type":"narrow"}],"termid":"GO:0002887"}


id: GO:0010771
data:
  {"annotated_genes":["SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86756],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051517"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of cell morphogenesis contributing to cell differentiation. Cell morphogenesis involved in differentiation is the change in form (cell shape and size) that occurs when relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell development","termid":"GO:0010721"},{"relation_name":"is_a","term_name":"regulation of cell morphogenesis","termid":"GO:0022604"},{"relation_name":"negatively_regulates","term_name":"cell morphogenesis","termid":"GO:0000902"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02169":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell morphogenesis","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010771","terms_by_termid":{"GO:0051517":null}}


id: PBO:0050114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 24","termid":"PBO:0050114"}


id: GO:0044314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 27 of the ubiquitin monomers, is added to a protein.","definition_xrefs":["PMID:19345326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein polyubiquitination","termid":"GO:0000209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"protein K27-linked ubiquitination","synonyms":[{"name":"protein K27-linked polyubiquitination","type":"exact"}],"termid":"GO:0044314"}


id: PBO:0034802
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"residue T239 is T275 in the updated structure","termid":"PBO:0034802"}


id: GO:0002625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of T cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"is_a","term_name":"regulation of T cell mediated immunity","termid":"GO:0002709"},{"relation_name":"regulates","term_name":"T cell antigen processing and presentation","termid":"GO:0002457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T cell antigen processing and presentation","synonyms":[{"name":"regulation of T lymphocyte antigen processing and presentation","type":"exact"},{"name":"regulation of T-cell antigen processing and presentation","type":"exact"},{"name":"regulation of T-lymphocyte antigen processing and presentation","type":"exact"}],"termid":"GO:0002625"}


id: GO:0031438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of mRNA cleavage.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of mRNA cleavage (obsolete GO:0031438)","synonyms":[{"name":"down regulation of mRNA cleavage","type":"exact"},{"name":"down-regulation of mRNA cleavage","type":"exact"},{"name":"downregulation of mRNA cleavage","type":"exact"},{"name":"inhibition of mRNA cleavage","type":"narrow"}],"termid":"GO:0031438"}


id: GO:0070339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bacterial lipopeptide stimulus.","definition_xrefs":["GOC:add","PMID:12077222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to bacterial lipoprotein","termid":"GO:0032493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to bacterial lipopeptide","termid":"GO:0070339"}


id: GO:0002259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in the morphology or behavior of an endothelial cell within a high endothelial venule resulting from exposure to an activating factor such as a cellular or soluble ligand, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial cell activation involved in immune response","termid":"GO:0002264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endothelial cell activation within high endothelial venule involved in immune response","synonyms":[{"name":"endothelial cell activation within high endothelial venule during immune response","type":"related"}],"termid":"GO:0002259"}


id: GO:1990777
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A spherical particle containing non-covalently associated proteins and lipids. Examples are plasma lipoprotein particles which transport lipids in the blood or lymph.","definition_xrefs":["GOC:vesicles"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lipid complex","termid":"GO:0032994"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"lipoprotein particle","termid":"GO:1990777"}


id: GO:1901381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of potassium ion transmembrane transport.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of potassium ion transport","termid":"GO:0043268"},{"relation_name":"is_a","term_name":"regulation of potassium ion transmembrane transport","termid":"GO:1901379"},{"relation_name":"is_a","term_name":"positive regulation of cation transmembrane transport","termid":"GO:1904064"},{"relation_name":"positively_regulates","term_name":"potassium ion transmembrane transport","termid":"GO:0071805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of potassium ion transmembrane transport","synonyms":[{"name":"activation of potassium ion transmembrane transport","type":"narrow"},{"name":"positive regulation of potassium ion membrane transport","type":"exact"},{"name":"up regulation of potassium ion transmembrane transport","type":"exact"},{"name":"up-regulation of potassium ion transmembrane transport","type":"exact"},{"name":"upregulation of potassium ion transmembrane transport","type":"exact"}],"termid":"GO:1901381"}


id: PBO:0068955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 199, pseudogene","termid":"PBO:0068955"}


id: PBO:0051034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IGFL2 antisense RNA 1","termid":"PBO:0051034"}


id: PBO:0063652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 1 pseudogene 9","termid":"PBO:0063652"}


id: PBO:0076141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUCLG2 divergent transcript","termid":"PBO:0076141"}


id: FYPO:0002655
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain more exocytic vesicles than normal, and the vesicles are larger than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"exocytic vesicles present in increased numbers","termid":"FYPO:0002086"},{"relation_name":"has_part","term_name":"enlarged exocytic vesicles","termid":"FYPO:0002654"},{"relation_name":"is_a","term_name":"exocytic vesicles present in increased numbers","termid":"FYPO:0002086"},{"relation_name":"is_a","term_name":"enlarged exocytic vesicles","termid":"FYPO:0002654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"enlarged exocytic vesicles present in increased numbers","synonyms":[{"name":"accumulation of enlarged exocytic vesicles","type":"related"},{"name":"additional enlarged exocytic vesicles present","type":"exact"},{"name":"enlarged exocytic vesicles present in greater numbers","type":"exact"},{"name":"enlarged exocytic vesicles present in increased numbers during mitotic cell cycle","type":"related"},{"name":"enlarged exocytic vesicles present in increased numbers during vegetative growth","type":"exact"},{"name":"enlarged exocytotic vesicles present in increased numbers","type":"exact"},{"name":"enlarged post-Golgi secretory vesicles present in increased numbers","type":"related"},{"name":"extra enlarged exocytic vesicles","type":"exact"}],"termid":"FYPO:0002655"}


id: PATO:0000523
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000523 insecticide sensitivity value (obsolete PATO:0000523)","termid":"PATO:0000523"}


id: PR:Q9UTH9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA-dihydrouridine synthase 3-like that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01833","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-dihydrouridine(47) synthase [NAD(P)(+)] (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16.04","secondary_identifiers":["UniProtKB:Q9UTH9"],"synonyms":[{"name":"Spom972h-DUS3L","type":"exact"},{"name":"tRNA-dihydrouridine synthase 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTH9"}


id: PBO:0050997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intraflagellar transport 140","termid":"PBO:0050997"}


id: PBO:0091357
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catabolism of ARginine, after S. cerevisiae","termid":"PBO:0091357"}


id: PBO:0031098
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-spindle_checkpoint_required_(obsolete_FYPO:0000275)","termid":"PBO:0031098"}


id: GO:1902832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cell proliferation in dorsal spinal cord.","definition_xrefs":["GOC:mr","GO_REF:0000058","GOC:TermGenie","PMID:21730158"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell proliferation in dorsal spinal cord","termid":"GO:0021921"},{"relation_name":"is_a","term_name":"negative regulation of neural precursor cell proliferation","termid":"GO:2000178"},{"relation_name":"negatively_regulates","term_name":"cell proliferation in dorsal spinal cord","termid":"GO:0010456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell proliferation in dorsal spinal cord","synonyms":[{"name":"down regulation of cell proliferation in dorsal spinal cord","type":"exact"},{"name":"down-regulation of cell proliferation in dorsal spinal cord","type":"exact"},{"name":"downregulation of cell proliferation in dorsal spinal cord","type":"exact"},{"name":"inhibition of cell proliferation in dorsal spinal cord","type":"narrow"}],"termid":"GO:1902832"}


id: PBO:0047330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box DNA helicase 1","termid":"PBO:0047330"}


id: GO:0030647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving an aminoglycoside antibiotic, any member of a group of broad spectrum antibiotics, of similar toxicity and pharmacology, that contain an aminodeoxysugar, an amino- or guanidino-substituted inositol ring, and one or more residues of other sugars. The group includes streptomycin, neomycin, framycetin, kanamycin, paromomycin, and gentamicin.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aminoglycoside antibiotic metabolic process","synonyms":[{"name":"aminoglycoside antibiotic metabolism","type":"exact"}],"termid":"GO:0030647"}


id: PBO:0086938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab GTPase; Myo2p-binding protein implicated in mother-to-bud transport of cortical endoplasmic reticulum (ER), late Golgi, and mitochondria during cell division; function is regulated at multiple levels; abundance of active Ypt11p forms is controlled by phosphorylation status and degradation; normally a low-abundance protein whose ER localization is only detected when protein is highly over expressed","termid":"PBO:0086938"}


id: PBO:0061417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuropeptide Y receptor Y2","termid":"PBO:0061417"}


id: GO:0047239
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxymandelonitrile + UDP-D-glucose = H+ + taxiphyllin + UDP.","definition_xrefs":["RHEA:15961","EC:2.4.1.178"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"hydroxymandelonitrile glucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.178-RXN","KEGG_REACTION:R02709"],"synonyms":[{"name":"UDP-glucose:4-hydroxymandelonitrile glucosyltransferase activity","type":"related"},{"name":"UDPglucose:4-hydroxymandelonitrile glucosyltransferase activity","type":"related"},{"name":"cyanohydrin glucosyltransferase activity","type":"related"}],"termid":"GO:0047239"}


id: GO:0042780
data:
  {"annotated_genes":["SJAG_04885","SJAG_00195","SJAG_02288","SJAG_02993","SJAG_00997","SJAG_03761","SJAG_01704"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88176,89050,94555,94556,95018,106034],"is_not":false,"summary":null,"term":"GO:0042780"},{"annotations":[79067,83771,106033,114103],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990180"},{"annotations":[83772,114104],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001680"}]},"cv_name":"biological_process","definition":"The process in which the 3' end of a pre-tRNA molecule is converted to that of a mature tRNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA processing","termid":"GO:0008033"},{"relation_name":"is_a","term_name":"RNA 3'-end processing","termid":"GO:0031123"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00195":null,"SJAG_00997":null,"SJAG_01704":null,"SJAG_02288":null,"SJAG_02993":null,"SJAG_03761":null,"SJAG_04885":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006399","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"tRNA 3'-end processing","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"tRNA 3' processing","type":"exact"}],"termid":"GO:0042780","terms_by_termid":{"GO:0001680":null,"GO:0042780":null,"GO:1990180":null}}


id: PBO:0047841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast proliferation associated lncRNA","termid":"PBO:0047841"}


id: GO:0000393
data:
  {"annotated_genes":["SJAG_01214","SJAG_02295","SJAG_01504","SJAG_01152","SJAG_01200","SJAG_02455","SJAG_04497","SJAG_01315","SJAG_00859"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94087,96717],"is_not":false,"summary":null,"term":"GO:0000393"},{"annotations":[102519,96774,101891],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000349"},{"annotations":[104996,105678,100966,110518],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000350"},{"annotations":[96718],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000388"}]},"cv_name":"biological_process","definition":"Structural rearrangements of the spliceosome complex, containing RNA to be spliced, to generate a catalytic conformation.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"},{"relation_name":"part_of","term_name":"mRNA splicing, via spliceosome","termid":"GO:0000398"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00859":null,"SJAG_01152":null,"SJAG_01200":null,"SJAG_01214":null,"SJAG_01315":null,"SJAG_01504":null,"SJAG_02295":null,"SJAG_02455":null,"SJAG_04497":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0044085","GO:0016071","GO:0010467","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"spliceosomal conformational changes to generate catalytic conformation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"3'-splice site cleavage, exon ligation","type":"broad"}],"termid":"GO:0000393","terms_by_termid":{"GO:0000349":null,"GO:0000350":null,"GO:0000388":null,"GO:0000393":null}}


id: SO:0000259
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has a glutamine anticodon, and a 3' glutamine binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"glutamic_acid_tRNA_primary_transcript","termid":"SO:0000216"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaminyl_tRNA","synonyms":[{"name":"glutaminyl tRNA","type":"exact"},{"name":"glutaminyl-transfer RNA","type":"exact"},{"name":"glutaminyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000259"}


id: PBO:0049259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"goosecoid homeobox","termid":"PBO:0049259"}


id: _global:participates_in
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"a relation between a continuant and a process, in which the continuant is somehow involved in the process","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"participates_in","secondary_identifiers":["RO:0000056"],"termid":"_global:participates_in"}


id: PBO:0036071
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_methylation_during_vegetative_growth","termid":"PBO:0036071"}


id: PBO:0016934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium transport regulatory factor (predicted)","termid":"PBO:0016934"}


id: FYPO:0001416
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of sulfide:quinone oxidoreductase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased oxidoreductase activity","termid":"FYPO:0000690"},{"relation_name":"is_a","term_name":"abnormal sulfide:quinone oxidoreductase activity","termid":"FYPO:0001415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000661","FYPO:0000652","FYPO:0000654","FYPO:0001985"],"is_obsolete":false,"name":"decreased sulfide:quinone oxidoreductase activity","synonyms":[{"name":"decreased sulfide-quinone reductase activity","type":"exact"},{"name":"decreased sulfide:quinone reductase activity","type":"exact"},{"name":"decreased sulphide:quinone oxidoreductase activity","type":"exact"},{"name":"reduced sulfide:quinone oxidoreductase activity","type":"exact"}],"termid":"FYPO:0001416"}


id: GO:0060077
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A synapse in which an action potential in the presynaptic cell reduces the probability of an action potential occurring in the postsynaptic cell.","definition_xrefs":["GOC:ef","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse","termid":"GO:0045202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"inhibitory synapse","secondary_identifiers":["Wikipedia:Inhibitory_postsynaptic_potential"],"termid":"GO:0060077"}


id: GO:0019653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic chemical reactions and pathways resulting in the breakdown of purine nucleobases, yielding energy in the form of ATP.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleobase catabolic process","termid":"GO:0006145"},{"relation_name":"is_a","term_name":"nitrogenous compound fermentation","termid":"GO:0019666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0006091","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"anaerobic purine nucleobase catabolic process","synonyms":[{"name":"anaerobic purine base catabolic process","type":"exact"},{"name":"anaerobic purine base catabolism","type":"exact"},{"name":"anaerobic purine catabolic process","type":"related"},{"name":"purine base fermentation","type":"exact"},{"name":"purine fermentation","type":"related"}],"termid":"GO:0019653"}


id: PBO:0070765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L11 pseudogene 1","termid":"PBO:0070765"}


id: PBO:0032702
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9K14_acetylation","termid":"PBO:0032702"}


id: PBO:0075838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSTR5 antisense RNA 1","termid":"PBO:0075838"}


id: PBO:0064030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 64","termid":"PBO:0064030"}


id: PBO:0048142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FXYD domain containing ion transport regulator 6","termid":"PBO:0048142"}


id: PBO:0057320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 519a-1","termid":"PBO:0057320"}


id: PBO:0056984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 30c-2","termid":"PBO:0056984"}


id: PBO:0017980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WISH/DIP/SPIN90 ortholog, endocytosis protein Dip1","termid":"PBO:0017980"}


id: PBO:0034265
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_biological_homology_relationship_with","termid":"PBO:0034265"}


id: MOD:00392
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-decanoyl-L-threonine.","definition_xrefs":["Unimod:449#T","PubMed:11546772","RESID:AA0387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-decanoylated residue","termid":"MOD:00668"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"O-decanoyl-L-threonine","synonyms":[{"name":"(2S)-2-amino-3-(decanoyloxy)propanoic acid","type":"exact"},{"name":"Decanoyl","type":"related"},{"name":"L-threonine decanoate ester","type":"exact"},{"name":"LIPID O-decanoyl threonine","type":"exact"},{"name":"O-decanoyl-L-threonine","type":"exact"},{"name":"O-decanoylated L-threonine","type":"exact"},{"name":"O3-decanoyl-L-threonine","type":"exact"},{"name":"ODecThr","type":"exact"},{"name":"lipid","type":"related"}],"termid":"MOD:00392"}


id: GO:0035978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H2A by the addition of an phosphate group to a serine residue at position 139 of the histone.","definition_xrefs":["GOC:yaf","PMID:16061642"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2A-S139 phosphorylation (obsolete GO:0035978)","synonyms":[{"name":"histone H2A.x phosphorylation at S139","type":"narrow"}],"termid":"GO:0035978"}


id: GO:0035196
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process leading to the generation of a functional miRNA. Includes the cleavage of stem-loop RNA precursors into microRNAs (miRNAs). miRNAs are a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein, or by increasing the degradation of non-protein-coding RNA transcripts.","definition_xrefs":["GOC:aruk","PMID:15066275","GOC:tb","PMID:23985560","GOC:rl","PMID:28379604","GOC:dph","GOC:bc","PMID:15066283"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory ncRNA processing","termid":"GO:0070918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"miRNA processing","secondary_identifiers":["GO:0030918"],"synonyms":[{"name":"gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"miRNA biogenesis","type":"related"},{"name":"miRNA biosynthetic process","type":"broad"},{"name":"miRNA maturation","type":"exact"},{"name":"miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"microRNA biogenesis","type":"exact"},{"name":"microRNA biosynthesis","type":"broad"},{"name":"microRNA biosynthetic process","type":"broad"},{"name":"microRNA metabolic process","type":"broad"},{"name":"microRNA metabolism","type":"broad"},{"name":"microRNA processing","type":"exact"},{"name":"microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"production of miRNAs involved in gene silencing by miRNA","type":"exact"},{"name":"production of microRNAs involved in gene silencing by microRNA","type":"exact"}],"termid":"GO:0035196"}


id: PBO:0074638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 31","termid":"PBO:0074638"}


id: PBO:0084523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the ChAPs family (Chs5p-Arf1p-binding proteins); members include Bch1p, Bch2p, Bud7p, and Chs6p; ChAPs family proteins form the exomer complex with Chs5p to mediate export of specific cargo proteins from the Golgi to the plasma membrane; interacts selectively with the activated, GTP-bound form of Arf1p; may interact with ribosomes; protein abundance increases and forms cytoplasmic foci in response to DNA replication stress","termid":"PBO:0084523"}


id: GO:0070661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a leukocyte population by cell division.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte proliferation","termid":"GO:0070661"}


id: PBO:0058506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5696","termid":"PBO:0058506"}


id: GO:0051697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The breakage of covalent bonds to detach lipid groups from a protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein delipidation","termid":"GO:0051697"}


id: PBO:0049689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heart and neural crest derivatives expressed 2","termid":"PBO:0049689"}


id: GO:0002539
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis or release of any prostaglandin following a stimulus as part of an inflammatory response, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arachidonate metabolite production involved in inflammatory response","termid":"GO:0002538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prostaglandin production involved in inflammatory response","synonyms":[{"name":"prostaglandin production involved in acute inflammatory response","type":"broad"}],"termid":"GO:0002539"}


id: PBO:0027625
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_cycle_arrest_in_mitotic_G1_phase_in_response_to_nitrogen_starvation","termid":"PBO:0027625"}


id: GO:0018208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-proline.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-amino acid modification","termid":"GO:0018193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-proline modification","termid":"GO:0018208"}


id: GO:0015616
data:
  {"annotated_genes":["SJAG_03832","SJAG_00980","SJAG_00871","SJAG_02460"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85332,89282,99284,109544],"is_not":false,"summary":null,"term":"GO:0015616"}]},"cv_name":"molecular_function","definition":"Generation of movement along a single- or double-stranded DNA molecule, driven by ATP hydrolysis.","definition_xrefs":["PMID:17631491","PMID:16428451","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent activity, acting on DNA","termid":"GO:0008094"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00871":null,"SJAG_00980":null,"SJAG_02460":null,"SJAG_03832":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140097","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"DNA translocase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015616","terms_by_termid":{"GO:0015616":null}}


id: FYPO:0007004
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone exchange occurs to a lower extent than normal in regions containing protein coding genes. Histone exchange is replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.","definition_xrefs":["GO:0005721","GO:0043486","PomBase:mah","PMID:26518661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"},{"relation_name":"is_a","term_name":"abnormal chromatin organization during vegetative growth","termid":"FYPO:0001352"},{"relation_name":"is_a","term_name":"abnormal chromatin remodeling","termid":"FYPO:0006356"},{"relation_name":"is_a","term_name":"abnormal histone turnover","termid":"FYPO:0007472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000641","FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"decreased histone turnover at protein coding gene during vegetative growth","synonyms":[{"name":"decreased histone exchange at protein coding gene during mitotic cell cycle","type":"related"},{"name":"reduced histone exchange at protein coding gene during vegetative growth","type":"exact"}],"termid":"FYPO:0007004"}


id: GO:0050945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of iridophore differentiation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of iridophore differentiation","termid":"GO:0050937"},{"relation_name":"is_a","term_name":"positive regulation of pigment cell differentiation","termid":"GO:0050942"},{"relation_name":"positively_regulates","term_name":"iridophore differentiation","termid":"GO:0050935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of iridophore differentiation","synonyms":[{"name":"activation of iridophore differentiation","type":"narrow"},{"name":"stimulation of iridophore differentiation","type":"narrow"},{"name":"up regulation of iridophore differentiation","type":"exact"},{"name":"up-regulation of iridophore differentiation","type":"exact"},{"name":"upregulation of iridophore differentiation","type":"exact"}],"termid":"GO:0050945"}


id: GO:0004810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a tRNA precursor + ATP + 2 CTP = a tRNA with a 3' CCA end + 3 diphosphate.","definition_xrefs":["RHEA:14433","PMID:2247609"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytidylyltransferase activity","termid":"GO:0070567"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016779"}],"interesting_parent_ids":["GO:0003674","GO:0140101","GO:0016740","GO:0003824","GO:0016779","GO:0140098"],"is_obsolete":false,"name":"CCA tRNA nucleotidyltransferase activity","secondary_identifiers":["EC:2.7.7.72","MetaCyc:TRNA-CYTIDYLYLTRANSFERASE-RXN","GO:0016437"],"synonyms":[{"name":"ATP(CTP)-tRNA nucleotidyltransferase","type":"broad"},{"name":"ATP(CTP):tRNA nucleotidyltransferase activity","type":"broad"},{"name":"CCA-adding enzyme activity","type":"related"},{"name":"CTP(ATP):tRNA nucleotidyltransferase","type":"broad"},{"name":"CTP:tRNA cytidylyltransferase activity","type":"broad"},{"name":"ribonucleic cytidylic cytidylic adenylic pyrophosphorylase","type":"broad"},{"name":"ribonucleic cytidylyltransferase","type":"broad"},{"name":"tRNA CCA-diphosphorylase activity","type":"related"},{"name":"tRNA adenylyl(cytidylyl)transferase","type":"broad"},{"name":"tRNA cytidylyltransferase activity","type":"related"},{"name":"tRNA-nucleotidyltransferase activity","type":"broad"},{"name":"transfer RNA adenylyltransferase","type":"broad"},{"name":"transfer ribonucleate adenyltransferase activity","type":"related"},{"name":"transfer ribonucleate adenylyltransferase","type":"broad"},{"name":"transfer ribonucleate nucleotidyltransferase","type":"broad"},{"name":"transfer ribonucleic acid nucleotidyl transferase","type":"broad"},{"name":"transfer ribonucleic adenylyl (cytidylyl) transferase","type":"broad"},{"name":"transfer ribonucleic-terminal trinucleotide nucleotidyltransferase","type":"broad"},{"name":"transfer-RNA nucleotidyltransferase","type":"broad"}],"termid":"GO:0004810"}


id: PBO:0082728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Rix1 complex and pre-replicative complexes (pre-RCs); required for processing of ITS2 sequences from 35S pre-rRNA; component of the pre-60S ribosomal particle with the dynein-related AAA-type ATPase Mdn1p; required for pre-RC formation and maintenance during DNA replication licensing; highly conserved protein which contains several WD40 motifs; IPI3 is an essential gene; other members include Rix1p, Ipi1p, and Ipi3p","termid":"PBO:0082728"}


id: PBO:0083790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein involved in the TOR signaling pathway; physically associates with the protein phosphatase 2A and the SIT4 protein phosphatase catalytic subunits","termid":"PBO:0083790"}


id: PBO:0001906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional repressor Sak1","termid":"PBO:0001906"}


id: GO:0043468
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of fucose.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"regulates","term_name":"fucose catabolic process","termid":"GO:0019317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of fucose catabolic process","termid":"GO:0043468"}


id: PBO:0043377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clustered mitochondria homolog pseudogene 7","termid":"PBO:0043377"}


id: PBO:0017896
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human Int6","termid":"PBO:0017896"}


id: FYPO:0007106
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of all or part of the mitotic spindle is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"},{"relation_name":"is_a","term_name":"normal spindle","termid":"FYPO:0004568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal mitotic spindle morphology","synonyms":[{"name":"normal mitotic spindle morphology during vegetative growth","type":"exact"},{"name":"normal spindle morphology during mitosis","type":"exact"},{"name":"normal spindle morphology during mitotic cell cycle","type":"exact"}],"termid":"FYPO:0007106"}


id: GO:0014735
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of muscle atrophy.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle adaptation","termid":"GO:0043502"},{"relation_name":"regulates","term_name":"muscle atrophy","termid":"GO:0014889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of muscle atrophy","termid":"GO:0014735"}


id: PBO:0003212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nem1-Spo7 complex regulatory subunit Spo7 (predicted)","termid":"PBO:0003212"}


id: FYPO:0003720
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the 2'-O-methylation of a nucleotide residue does not occur at a specific site in an rRNA molecule that is normally modified.","definition_xrefs":["PMID:17222800","GO:0000452","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal snRNA modification","termid":"FYPO:0008111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000294","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"snoRNA guided rRNA 2'-O-methylation abolished at specific site","termid":"FYPO:0003720"}


id: GO:0060164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process controlling the activation and/or rate at which a relatively unspecialized cell acquires features of a neuron.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neuron differentiation","termid":"GO:0045664"},{"relation_name":"is_a","term_name":"regulation of timing of cell differentiation","termid":"GO:0048505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of timing of neuron differentiation","termid":"GO:0060164"}


id: PBO:0087179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I second largest subunit A135","termid":"PBO:0087179"}


id: PBO:0045379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPP3 divergent transcript","termid":"PBO:0045379"}


id: BFO:0000050
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"a core relation that holds between a part and its whole","direct_ancestors":[{"relation_name":"is_a","term_name":"overlaps","termid":"RO:0002131"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"overlaps","termid":"_global:overlaps"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"part_of","secondary_identifiers":["BFO:0000050","OBO_REL:part_of"],"synonyms":[{"name":"part of","type":"exact"}],"termid":"BFO:0000050"}


id: PBO:0033829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannose-6-phosphate isomerase Mpi1 (predicted)","termid":"PBO:0033829"}


id: GO:0043654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell interprets signals (in the form of specific proteins and lipids) on the surface of a dying cell which it will engulf and remove by phagocytosis.","definition_xrefs":["GOC:rk","PMID:15536015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phagocytosis, recognition","termid":"GO:0006910"},{"relation_name":"part_of","term_name":"apoptotic cell clearance","termid":"GO:0043277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"recognition of apoptotic cell","synonyms":[{"name":"detection of apoptotic cell","type":"exact"},{"name":"detection of apoptotic cell corpse","type":"exact"},{"name":"detection of cell corpse","type":"exact"},{"name":"recognition of apoptotic cell corpse","type":"exact"},{"name":"recognition of cell corpse","type":"exact"}],"termid":"GO:0043654"}


id: PBO:NCBI Taxonomy id
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase organism property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taxon_id","termid":"PBO:NCBI Taxonomy id"}


id: GO:0016921
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the release of the N-terminal pyroglutamyl group from pGlu-His-Xaa tripeptides and pGlu-His-Xaa-Gly tetrapeptides.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete pyroglutamyl-peptidase II activity (obsolete GO:0016921)","synonyms":[{"name":"pyroglutamyl-peptidase II activity","type":"exact"}],"termid":"GO:0016921"}


id: GO:0036322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of pancreatic polypeptide (PP) from a cell. Pancreatic polypeptide is a 36 amino acid polypeptide secreted by islets of Langerhans cells in the pancreas.","definition_xrefs":["GOC:cjm","Wikipedia:Pancreatic_polypeptide","PMID:12730894"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone secretion","termid":"GO:0030072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0023052"],"is_obsolete":false,"name":"pancreatic polypeptide secretion","synonyms":[{"name":"PP secretion","type":"narrow"}],"termid":"GO:0036322"}


id: PBO:0044188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chymotrypsinogen B1","termid":"PBO:0044188"}


id: FYPO:0005185
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that contains one or more septa, has condensed chromatin, and undergoes two or more rounds of cell division, and then dies.","definition_xrefs":["PMID:8557037","PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions","termid":"FYPO:0002430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, septated cell with condensed chromatin","synonyms":[{"name":"inviable following spore germination, multiple cell divisions, septated cell with condensed chromatin","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, septated cell with condensed chromatin","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, septated cell with condensed chromatin","type":"exact"}],"termid":"FYPO:0005185"}


id: PBO:0057593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 922","termid":"PBO:0057593"}


id: PBO:0058082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4300","termid":"PBO:0058082"}


id: PBO:0039753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein O pseudogene 4","termid":"PBO:0039753"}


id: PBO:0090405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxycytidyl transferase Rev1","termid":"PBO:0090405"}


id: GO:0018897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of the sulfur atom from dibenzothiophene, a substance composed of two benzene rings linked by one sulfide bond and one carbon-carbon bond.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dibenzothiophene metabolic process","termid":"GO:0018895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"dibenzothiophene desulfurization","secondary_identifiers":["UM-BBD_pathwayID:dbt","MetaCyc:PWY-681"],"synonyms":[{"name":"dibenzothiophene desulphurization","type":"exact"}],"termid":"GO:0018897"}


id: PBO:0063345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PEST containing nuclear protein pseudogene 5","termid":"PBO:0063345"}


id: PR:Q9P6R2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- leo1 gene.","definition_xrefs":["UniProtKB:Q9P6R2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C13E7.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13E7.08c","synonyms":[{"name":"Spom972h-leo1","type":"exact"}],"termid":"PR:Q9P6R2"}


id: GO:1901658
data:
  {"annotated_genes":["SJAG_03771","SJAG_04927","SJAG_02580","SJAG_02959","SJAG_01673","SJAG_01359","SJAG_00957"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83623,83622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006154"},{"annotations":[104506,85227],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009972"},{"annotations":[108321,86683,87098],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006152"},{"annotations":[86684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046135"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glycosyl compound.","definition_xrefs":["GOC:TermGenie","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative catabolic process","termid":"GO:1901136"},{"relation_name":"is_a","term_name":"glycosyl compound metabolic process","termid":"GO:1901657"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00957":null,"SJAG_01359":null,"SJAG_01673":null,"SJAG_02580":null,"SJAG_02959":null,"SJAG_03771":null,"SJAG_04927":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycosyl compound catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glycosyl compound breakdown","type":"exact"},{"name":"glycosyl compound catabolism","type":"exact"},{"name":"glycosyl compound degradation","type":"exact"}],"termid":"GO:1901658","terms_by_termid":{"GO:0006152":null,"GO:0006154":null,"GO:0009972":null,"GO:0046135":null}}


id: PBO:0080834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosyl-tRNA synthetase 2","termid":"PBO:0080834"}


id: GO:0046946
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving hydroxylysine (5-hydroxy-2,6-diaminohexanoic acid), a chiral alpha-amino acid. Hydroxylysine is found in collagen and commonly has galactose and then glucose added sequentially by glycosyltransferases.","definition_xrefs":["ISBN:0198506732","PubChem_Compound:1029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"aspartate family amino acid metabolic process","termid":"GO:0009066"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"hydroxylysine metabolic process","synonyms":[{"name":"hydroxylysine metabolism","type":"exact"}],"termid":"GO:0046946"}


id: PBO:0052638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 6","termid":"PBO:0052638"}


id: FYPO:0004644
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000661","FYPO:0000652","FYPO:0000707","FYPO:0000654"],"is_obsolete":false,"name":"abnormal bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity","termid":"FYPO:0004644"}


id: SO:0001113
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A peptide region which hydrogen bonded to another region of peptide running in the oposite direction (both running N-terminal to C-terminal). This orientation is slightly less stable because it introduces nonplanarity in the inter-strand hydrogen bonding pattern. Hydrogen bonding occurs between every other C=O from one strand to every other N-H on the adjacent strand. In this case, if two atoms C-alpha (i)and C-alpha (j) are adjacent in two hydrogen-bonded beta strands, then they do not hydrogen bond to each other; rather, one residue forms hydrogen bonds to the residues that flank the other (but not vice versa). For example, residue i may form hydrogen bonds to residues j - 1 and j + 1; this is known as a wide pair of hydrogen bonds. By contrast, residue j may hydrogen-bond to different residues altogether, or to none at all. The dihedral angles (phi, psi) are about (-120 degrees, 115 degrees) in parallel sheets.","definition_xrefs":["EBIBS:GAR","UniProt:curation_manual"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta_strand","termid":"SO:0001111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"parallel_beta_strand","secondary_identifiers":["BS:00151"],"synonyms":[{"name":"parallel beta strand","type":"exact"}],"termid":"SO:0001113"}


id: PBO:0076181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfotransferase family 6B member 1","termid":"PBO:0076181"}


id: GO:0031910
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Stable, specialized structure for the ingestion of food by the cell into phagosomes.","definition_xrefs":["PMID:10503189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0005575"],"is_obsolete":false,"name":"cytostome","secondary_identifiers":["Wikipedia:Cytostome"],"termid":"GO:0031910"}


id: PBO:0053293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIMK2 pseudogene 1","termid":"PBO:0053293"}


id: PBO:0110194
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canto_needs_approval_timestamp","termid":"PBO:0110194"}


id: PBO:0080808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-ray repair cross complementing 4","termid":"PBO:0080808"}


id: GO:1902127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving (-)-lariciresinol.","definition_xrefs":["PMID:15949826","GOC:TermGenie","PMID:9872995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignan metabolic process","termid":"GO:0009806"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"(-)-lariciresinol metabolic process","synonyms":[{"name":"(-)-lariciresinol metabolism","type":"exact"}],"termid":"GO:1902127"}


id: GO:0045487
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gibberellin metabolic process","termid":"GO:0009685"},{"relation_name":"is_a","term_name":"diterpenoid catabolic process","termid":"GO:0016103"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"gibberellin catabolic process","synonyms":[{"name":"gibberellic acid breakdown","type":"narrow"},{"name":"gibberellic acid catabolic process","type":"narrow"},{"name":"gibberellic acid catabolism","type":"narrow"},{"name":"gibberellic acid degradation","type":"narrow"},{"name":"gibberellin catabolism","type":"exact"}],"termid":"GO:0045487"}


id: GO:0036300
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A receptor-mediated endocytosis process that results in the movement of a B cell receptor from the plasma membrane to the inside of the cell.","definition_xrefs":["GOC:add","GOC:amm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor internalization","termid":"GO:0031623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"B cell receptor internalization","synonyms":[{"name":"B cell receptor uptake of antigen","type":"narrow"},{"name":"BCR endocytosis","type":"exact"},{"name":"BCR receptor internalization","type":"exact"}],"termid":"GO:0036300"}


id: PBO:0088330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi multispanning membrane VanZ-like family protein","termid":"PBO:0088330"}


id: FYPO:0007583
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cytoplasm is decreased during telophase of mitosis.","definition_xrefs":["PMID:19736319","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to cytoplasm","termid":"FYPO:0006099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to cytoplasm during mitotic telophase","synonyms":[{"name":"decreased protein localisation to cytoplasm during mitotic telophase","type":"exact"},{"name":"decreased protein localization to cytoplasm during telophase during vegetative growth","type":"exact"},{"name":"decreased protein localization to cytoplasm during telophase of mitotic cell cycle","type":"exact"},{"name":"reduced protein localization to cytoplasm during mitotic telophase","type":"exact"}],"termid":"FYPO:0007583"}


id: PBO:0058743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6867","termid":"PBO:0058743"}


id: PBO:0060185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucin 5AC, oligomeric mucus/gel-forming","termid":"PBO:0060185"}


id: PBO:0085254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peripheral membrane protein of the plasma membrane; interacts with Mid2p; regulates the cell integrity pathway mediated by Pkc1p and Slt2p; the authentic protein is detected in a phosphorylated state in highly purified mitochondria","termid":"PBO:0085254"}


id: GO:0051839
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the cytolysis by that organism of cells in its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:add"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation by host of cytolysis of symbiont cells (obsolete GO:0051839)","termid":"GO:0051839"}


id: PBO:0067161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 214, pseudogene","termid":"PBO:0067161"}


id: GO:0003876
data:
  {"annotated_genes":["SJAG_04123"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97900],"is_not":false,"summary":null,"term":"GO:0003876"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: AMP + H2O = IMP + NH3.","definition_xrefs":["EC:3.5.4.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenosine-phosphate deaminase activity","termid":"GO:0047623"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04123":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016810","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"AMP deaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:14777","Reactome:R-HSA-76590","MetaCyc:AMP-DEAMINASE-RXN"],"synonyms":[{"name":"5-AMP deaminase activity","type":"related"},{"name":"5-adenylate deaminase activity","type":"related"},{"name":"5-adenylic acid deaminase activity","type":"related"},{"name":"AMP aminase activity","type":"related"},{"name":"AMP aminohydrolase activity","type":"related"},{"name":"adenosine 5-monophosphate deaminase activity","type":"related"},{"name":"adenosine 5-phosphate aminohydrolase activity","type":"related"},{"name":"adenosine monophosphate deaminase activity","type":"related"},{"name":"adenyl deaminase activity","type":"related"},{"name":"adenylate aminohydrolase activity","type":"related"},{"name":"adenylate deaminase activity","type":"related"},{"name":"adenylate deaminase reaction","type":"exact"},{"name":"adenylate desaminase activity","type":"related"},{"name":"adenylic acid deaminase activity","type":"related"},{"name":"adenylic deaminase activity","type":"related"},{"name":"myoadenylate deaminase activity","type":"narrow"}],"termid":"GO:0003876","terms_by_termid":{"GO:0003876":null}}


id: PBO:0062900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidoreductase like domain containing 1","termid":"PBO:0062900"}


id: PBO:0029673
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-actomyosin_contractile_ring_displaced_from_midpoint","termid":"PBO:0029673"}


id: GO:0090446
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the consistent predetermined time point at which a nematode larva progresses from an initial condition to a later condition and decreases the rate at which this time point is reached.","definition_xrefs":["PMID:17550772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of development, heterochronic","termid":"GO:0045961"},{"relation_name":"is_a","term_name":"negative regulation of nematode larval development","termid":"GO:0061064"},{"relation_name":"is_a","term_name":"regulation of nematode larval development, heterochronic","termid":"GO:0090444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of nematode larval development, heterochronic","termid":"GO:0090446"}


id: PBO:0088970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhomboid family protease, unknown biological role, associated with COP1 coated vesicle","termid":"PBO:0088970"}


id: PBO:0052403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 4","termid":"PBO:0052403"}


id: GO:0004037
data:
  {"annotated_genes":["SJAG_00035"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88483],"is_not":false,"summary":null,"term":"GO:0004037"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: allantoate + H2O = (S)-ureidoglycolate + urea.","definition_xrefs":["RHEA:11016","EC:3.5.3.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00035":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"allantoicase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R02422","MetaCyc:ALLANTOICASE-RXN"],"synonyms":[{"name":"allantoate amidinohydrolase activity","type":"related"},{"name":"allantoine amidinohydrolase activity","type":"exact"}],"termid":"GO:0004037","terms_by_termid":{"GO:0004037":null}}


id: GO:0040031
data:
  {"annotated_genes":["SJAG_00083","SJAG_01958","SJAG_01234","SJAG_03572","SJAG_00566","SJAG_04754","SJAG_00088"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91237],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120049"},{"annotations":[110452,102404,91403,97249,86045,102343],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031120"}]},"cv_name":"biological_process","definition":"The covalent alteration of one or more nucleotides within snRNA, resulting in a change in the properties of the snRNA.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA modification","termid":"GO:0009451"},{"relation_name":"is_a","term_name":"snRNA processing","termid":"GO:0016180"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00083":null,"SJAG_00088":null,"SJAG_00566":null,"SJAG_01234":null,"SJAG_01958":null,"SJAG_03572":null,"SJAG_04754":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016073"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016073","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"snRNA modification","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0040031","terms_by_termid":{"GO:0031120":null,"GO:0120049":null}}


id: PR:O13903
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An exosome complex component RRP40 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR21321:SF1","PRO:DNx","OMA:SCHPO00475"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome complex component rrp40 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22A12.12c","secondary_identifiers":["UniProtKB:O13903"],"synonyms":[{"name":"Spom972h-EXOSC3","type":"exact"},{"name":"ribosomal RNA-processing protein 40 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13903"}


id: FYPO:0002737
data:
  {"alleles_by_uniquename":{"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"},"SJAG_03596:allele-1":{"allele_type":"amino_acid_mutation","description":"L264P,P442T","gene_uniquename":"SJAG_03596","name":"cdc15-A","uniquename":"SJAG_03596:allele-1"},"SJAG_04280:allele-1":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-1"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115617],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000231"},{"annotations":[115622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000729"},{"annotations":[115407],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"},{"annotations":[115618],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0000118"}],"single_locus_phenotype":[{"annotations":[115610],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000231"},{"annotations":[115787,115788,115789],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"FYPO:0000671"},{"annotations":[115571,115393],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002998"},{"annotations":[115696,115384],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"},{"annotations":[115643],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0002026"},{"annotations":[115758,115611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000729"},{"annotations":[115408],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"},{"annotations":[115281,115282,115280],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000324"},{"annotations":[115608,115607],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0000118"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell does not execute a mitotic cell cycle process normally. A mitotic cell cycle process is any of the processes that form part of the mitotic cell cycle, and thereby ensures successive accurate and complete genome replication and chromosome segregation during the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah","GO:0022402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle","termid":"FYPO:0000059"},{"relation_name":"is_a","term_name":"abnormal cell cycle 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mitotic cell cycle process during mitotic cell cycle","type":"related"},{"name":"abnormal mitotic cell cycle process during vegetative growth","type":"exact"}],"termid":"FYPO:0002737","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000248":null,"FYECO:0000338":null,"FYPO:0000118":null,"FYPO:0000231":null,"FYPO:0000324":null,"FYPO:0000671":null,"FYPO:0000729":null,"FYPO:0001369":null,"FYPO:0002026":null,"FYPO:0002998":null,"FYPO:0004318":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0018167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The linkage of the chromophore phycoerythrobilin to phycoerythrin via phycoerythrobilin-bis-L-cysteine.","definition_xrefs":["RESID:AA0259"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-phycoerythrobilin linkage via phycoerythrobilin-bis-L-cysteine (obsolete GO:0018167)","termid":"GO:0018167"}


id: PBO:0084169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Highly conserved SUMO E3 ligase subunit of SMC5-SMC6 complex; required for anchoring dsDNA breaks to the nuclear periphery; SMC5-SMC6 plays a key role in removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; required for efficient sister chromatid cohesion; mutants are sensitive to MMS, show increased spontaneous mutation and mitotic recombination; SUMOylates and inhibits Snf1p function; supports nucleolar function","termid":"PBO:0084169"}


id: FYPO:0002325
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a sterol measured in a cell differs from normal. A sterol is any natural product derived from the steroid skeleton and containing a hydroxy group in the 3 position, closely related to cholestan-3-ol.","definition_xrefs":["PomBase:mah","CHEBI:15889"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered cellular sterol level","synonyms":[{"name":"abnormal sterol level","type":"exact"},{"name":"altered cellular sterol level during mitotic cell cycle","type":"related"},{"name":"altered cellular sterol level during vegetative growth","type":"exact"},{"name":"altered sterol level","type":"exact"}],"termid":"FYPO:0002325"}


id: PBO:0050008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemojuvelin BMP co-receptor","termid":"PBO:0050008"}


id: PBO:0078061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 51 (pseudogene)","termid":"PBO:0078061"}


id: PBO:0108559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA recombination mediator Swi5","termid":"PBO:0108559"}


id: PBO:0030193
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_multinucleate_aseptate_vegetative_cell","termid":"PBO:0030193"}


id: MOD:01951
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-glutamine residue and an L-serine residue by an ester bond and releasing ammonia to form O-(L-isoglutamyl)-L-serine.","definition_xrefs":["PubMed:17051152","RESID:AA0597#QSX"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues with loss of ammonia","termid":"MOD:00946"},{"relation_name":"is_a","term_name":"O-(L-isoglutamyl)-L-serine","termid":"MOD:01977"},{"relation_name":"is_a","term_name":"crosslinked L-glutamine residue","termid":"MOD:02046"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(L-isoglutamyl)-L-serine (Gln-Ser)","synonyms":[{"name":"(2S)-2-amino-5-[(2S)-2-amino-2-carboxyethoxy]-5-oxopentanoic acid","type":"exact"},{"name":"O(beta)-(gamma-glutamyl)serine","type":"exact"},{"name":"O-(L-isoglutamyl)-L-serine","type":"exact"},{"name":"O3-(isoglutamyl)-serine","type":"exact"}],"termid":"MOD:01951"}


id: GO:0090349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of the chemical reactions and pathways involving organohalogen compounds, as carried out by individual cells.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular metabolic process","termid":"GO:0031324"},{"relation_name":"is_a","term_name":"regulation of cellular organohalogen metabolic process","termid":"GO:0090347"},{"relation_name":"negatively_regulates","term_name":"cellular organohalogen metabolic process","termid":"GO:0090345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellular organohalogen metabolic process","termid":"GO:0090349"}


id: MOD:01979
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-(L-isoglutamyl)-L-threonine, using free L-glutamine and releasing ammonia, or using a peptidyl L-glutamine and releasing ammonia.","definition_xrefs":["RESID:AA0536","PubMed:8706862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"crosslinked L-threonine residue","termid":"MOD:02056"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(L-isoglutamyl)-L-threonine","synonyms":[{"name":"(2S)-2-amino-5-([(1S,2R)-1-amino-1-carboxypropan-2-yl]oxy)-5-oxopentanoic acid","type":"exact"},{"name":"(2S,3R)-2-amino-3-([(4S)-4-amino-4-carboxybutanoyl]oxy)-propanoic acid","type":"exact"},{"name":"5-(threon-O3-yl)glutamate","type":"exact"},{"name":"O(beta)-(gamma-glutamyl)threonine","type":"exact"},{"name":"O-(L-isoglutamyl)-L-threonine","type":"exact"},{"name":"O3-(isoglutamyl)threonine","type":"exact"}],"termid":"MOD:01979"}


id: PBO:0088648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA recombination mediator, RecA family ATPase Rad57/Rhp57","termid":"PBO:0088648"}


id: PBO:0039096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylhomocysteinase like 2","termid":"PBO:0039096"}


id: PBO:0073945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 19 member 3","termid":"PBO:0073945"}


id: PBO:0034662
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_plasma_membrane_to_vacuole_transport","termid":"PBO:0034662"}


id: PBO:0060371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myozenin 1","termid":"PBO:0060371"}


id: GO:1903112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of single-strand break repair via homologous recombination.","definition_xrefs":["GOC:bhm","GOC:TermGenie","PMID:24339919","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA recombination","termid":"GO:0045911"},{"relation_name":"is_a","term_name":"regulation of single-strand break repair via homologous recombination","termid":"GO:1903110"},{"relation_name":"is_a","term_name":"positive regulation of single strand break repair","termid":"GO:1903518"},{"relation_name":"positively_regulates","term_name":"single-strand break repair via homologous recombination","termid":"GO:1990396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006281"},{"rel_name":"positively_regulates","termid":"GO:0006310"},{"rel_name":"regulates","termid":"GO:0006281"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0006281","GO:0006310","GO:0008150"],"is_obsolete":false,"name":"positive regulation of single-strand break repair via homologous recombination","synonyms":[{"name":"activation of single-strand break repair via homologous recombination","type":"narrow"},{"name":"up regulation of single-strand break repair via homologous recombination","type":"exact"},{"name":"up-regulation of single-strand break repair via homologous recombination","type":"exact"},{"name":"upregulation of single-strand break repair via homologous recombination","type":"exact"}],"termid":"GO:1903112"}


id: GO:0099560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of presynaptic membrane to postsynaptic membrane via adhesion molecules that are at least partially embedded in the plasma membrane.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion via plasma-membrane adhesion molecules","termid":"GO:0098742"},{"relation_name":"part_of","term_name":"synapse organization","termid":"GO:0050808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"synaptic membrane adhesion","synonyms":[{"name":"synapse adhesion between pre- and post-synapse","type":"exact"}],"termid":"GO:0099560"}


id: GO:0007367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Division of the 14 parasegments of the embryo into anterior and posterior compartments; exemplified by the actions of the segment polarity gene products.","definition_xrefs":["ISBN:0879694238","ISBN:0632030488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"periodic partitioning","termid":"GO:0007365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"segment polarity determination","termid":"GO:0007367"}


id: GO:0031455
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving glycine betaine, N-trimethylglycine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine metabolic process","termid":"GO:0006577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycine betaine metabolic process","synonyms":[{"name":"N-trimethylglycine metabolic process","type":"exact"},{"name":"N-trimethylglycine metabolism","type":"exact"},{"name":"glycine betaine metabolism","type":"exact"}],"termid":"GO:0031455"}


id: PR:O42843
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC23A1.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C23A1.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23A1.05","synonyms":[{"name":"Spom972h-SPAC23A1.05","type":"exact"}],"termid":"PR:O42843"}


id: GO:0071232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to amino acid stimulus","termid":"GO:0071230"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"response to histidine","termid":"GO:0080052"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to histidine","termid":"GO:0071232"}


id: PBO:0042049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 106","termid":"PBO:0042049"}


id: GO:0003972
data:
  {"annotated_genes":["SJAG_00956"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86678],"is_not":false,"summary":null,"term":"GO:0003972"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + (ribonucleotide)n-3'-hydroxyl + 5'-phospho-(ribonucleotide)m = (ribonucleotide)n+m + AMP + diphosphate.","definition_xrefs":["EC:6.5.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA ligase activity","termid":"GO:0008452"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00956":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0140098","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"RNA ligase (ATP) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RNA-LIGASE-ATP-RXN","Reactome:R-HSA-5696816"],"synonyms":[{"name":"poly(ribonucleotide):poly(ribonucleotide) ligase (AMP-forming)","type":"related"},{"name":"polyribonucleotide ligase activity","type":"related"},{"name":"polyribonucleotide synthase (ATP) activity","type":"related"},{"name":"ribonucleic ligase activity","type":"broad"}],"termid":"GO:0003972","terms_by_termid":{"GO:0003972":null}}


id: PBO:0047420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and WD repeat domain containing 10B","termid":"PBO:0047420"}


id: SO:0001095
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with cobalt ions.","definition_xrefs":["SO:cb","EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_metal_contact","termid":"SO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_cobalt_ion_contact_site","secondary_identifiers":["BS:00136"],"synonyms":[{"name":"Co_contact_site","type":"exact"},{"name":"polypeptide cobalt ion contact site","type":"exact"}],"termid":"SO:0001095"}


id: GO:0004432
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A class I PI3K activated by tyrosine phosphorylation events.","definition_xrefs":["PMID:11050418"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-phosphatidylinositol-4-phosphate kinase, class IA (obsolete GO:0004432)","synonyms":[{"name":"1-phosphatidylinositol-4-phosphate kinase, class IA","type":"exact"}],"termid":"GO:0004432"}


id: PBO:0055704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LLPH pseudogene 3","termid":"PBO:0055704"}


id: GO:0045029
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity, activated by UDP.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled pyrimidinergic nucleotide receptor activity","termid":"GO:0071553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled UDP receptor activity","synonyms":[{"name":"UDP-activated nucleotide receptor activity","type":"broad"}],"termid":"GO:0045029"}


id: GO:0004999
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with vasoactive intestinal polypeptide to initiate a change in cell activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"vasoactive intestinal polypeptide receptor activity","termid":"GO:0004999"}


id: GO:0072427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to an intra-S DNA damage checkpoint.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of DNA damage stimulus involved in intra-S DNA damage checkpoint (obsolete GO:0072427)","synonyms":[{"name":"intra-S DNA damage checkpoint sensor mechanism","type":"related"},{"name":"intra-S DNA damage checkpoint sensor process","type":"related"},{"name":"sensing involved in intra-S DNA damage checkpoint","type":"related"}],"termid":"GO:0072427"}


id: PBO:0012249
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Loss Of Zinc sensing","termid":"PBO:0012249"}


id: GO:1901795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 3-(3-hydroxyphenyl)propanoate.","definition_xrefs":["GOC:TermGenie","GOC:yaf","PMID:10537203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"},{"relation_name":"is_a","term_name":"3-(3-hydroxyphenyl)propanoate metabolic process","termid":"GO:1901793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"3-(3-hydroxyphenyl)propanoate biosynthetic process","synonyms":[{"name":"3-(3-hydroxyphenyl)propanoate anabolism","type":"exact"},{"name":"3-(3-hydroxyphenyl)propanoate biosynthesis","type":"exact"},{"name":"3-(3-hydroxyphenyl)propanoate formation","type":"exact"},{"name":"3-(3-hydroxyphenyl)propanoate synthesis","type":"exact"}],"termid":"GO:1901795"}


id: GO:0047243
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a flavanone + UDP-D-glucose = a flavanone 7-O-beta-D-glucoside + UDP.","definition_xrefs":["EC:2.4.1.185","MetaCyc:2.4.1.185-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"flavanone 7-O-beta-glucosyltransferase activity","synonyms":[{"name":"UDP-glucose:flavanone 7-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:flavanone 7-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"hesperetin 7-O-glucosyl-transferase activity","type":"related"},{"name":"naringenin 7-O-glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-flavanone 7-O-glucosyltransferase activity","type":"related"}],"termid":"GO:0047243"}


id: SO:0000104
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"CDS","termid":"SO:0000316"},{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypeptide","secondary_identifiers":["SO:0000358","http://en.wikipedia.org/wiki/Polypeptide"],"synonyms":[{"name":"protein","type":"exact"}],"termid":"SO:0000104"}


id: MOD:00352
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to L-glutamyl 5-omega-hydroxyceramide ester.","definition_xrefs":["PubMed:10411887","RESID:AA0347","PubMed:9651377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamine residue","termid":"MOD:00907"},{"relation_name":"is_a","term_name":"lipoconjugated residue","termid":"MOD:01155"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamyl 5-omega-hydroxyceramide ester","synonyms":[{"name":"(S)-2-amino-5-[30-((2S,3R,4E)-1,3-dihydroxyicos-4-en-2-ylamino)-30-oxotriacontan-1-yloxy]-5-oxopentanoic acid","type":"exact"},{"name":"2-[30-(isoglutamyloxy)triacontanoyl]icosasphingosine","type":"exact"},{"name":"L-glutamyl 5-omega-hydroxyceramide ester","type":"exact"},{"name":"LIPID Omega-hydroxyceramide glutamate ester","type":"exact"}],"termid":"MOD:00352"}


id: GO:0035208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) that are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:bf","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune system process","termid":"GO:0002684"},{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of hemocyte proliferation","termid":"GO:0035206"},{"relation_name":"positively_regulates","term_name":"hemocyte proliferation","termid":"GO:0035172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hemocyte proliferation","synonyms":[{"name":"activation of hemocyte proliferation","type":"narrow"},{"name":"positive regulation of arthropod blood cell proliferation","type":"exact"},{"name":"stimulation of hemocyte proliferation","type":"narrow"},{"name":"up regulation of hemocyte proliferation","type":"exact"},{"name":"up-regulation of hemocyte proliferation","type":"exact"},{"name":"upregulation of hemocyte proliferation","type":"exact"}],"termid":"GO:0035208"}


id: PR:P54789
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An origin recognition complex subunit 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A10.15","secondary_identifiers":["UniProtKB:P54789"],"synonyms":[{"name":"SPBC29A10.15","type":"related"},{"name":"Spom972h-ORC1","type":"exact"},{"name":"orp1","type":"related"}],"termid":"PR:P54789"}


id: PBO:0091619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-aminocyclopropane-1-carboxylate deaminase","termid":"PBO:0091619"}


id: PBO:0082824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved oxidoreductase involved in lipid droplet morphology; mutant shows defects in CPY processing and vacuolar morphology; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; homologus to human RDH12 linked to Leber Congenital Amaurosis","termid":"PBO:0082824"}


id: MOD:01828
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue sulfhydryl hydrogen with a Thermo Scientific cysTMT6plex-131 reporter+balance group.","definition_xrefs":["URL:http://www.piercenet.com/files/2162220.pdf","PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysTMT6plex reporter+balance reagent cysteine disulfide","termid":"MOD:01821"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysTMT6plex-131 reporter+balance reagent cysteine disulfide","synonyms":[{"name":"S-(2-{3-[2-(2,6-dimethylpiperidin-1-yl)acetamido]propanamido}ethyl)sulfanyl","type":"exact"},{"name":"cysTMT6plex","type":"related"},{"name":"cysteine-reactive Sixplex Tandem Mass Tag(TM)","type":"related"}],"termid":"MOD:01828"}


id: GO:0018663
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,6-dihydroxypyridine + H+ + NADH + O2 = 2,3,6-trihydroxypyridine + H2O + NAD+.","definition_xrefs":["EC:1.14.13.10","RHEA:16917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"2,6-dihydroxypyridine 3-monooxygenase activity","secondary_identifiers":["MetaCyc:1.14.13.10-RXN","UM-BBD_reactionID:r0479","KEGG_REACTION:R04130"],"synonyms":[{"name":"2,6-dihydroxypyridine oxidase activity","type":"exact"},{"name":"2,6-dihydroxypyridine,NADH:oxygen oxidoreductase (3-hydroxylating)","type":"related"}],"termid":"GO:0018663"}


id: PBO:0005307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp13 (predicted)","termid":"PBO:0005307"}


id: PBO:0045746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous Bornavirus like nucleoprotein 3, pseudogene","termid":"PBO:0045746"}


id: GO:1903443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoic acid stimulus.","definition_xrefs":["GO_REF:0000071","GOC:sl","GOC:TermGenie","PMID:23232760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to fatty acid","termid":"GO:0071398"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"response to lipoic acid","termid":"GO:1903442"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to lipoic acid","termid":"GO:1903443"}


id: PBO:0056086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LY86 antisense RNA 1","termid":"PBO:0056086"}


id: PBO:0032724
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_chromatin_silencing_at_centromere_central_core","termid":"PBO:0032724"}


id: PR:Q9UTG4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps2602 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTG4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S26-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1805.11c","synonyms":[{"name":"Spom972h-rps2602","type":"exact"}],"termid":"PR:Q9UTG4"}


id: GO:0042600
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish.","definition_xrefs":["ISBN:0721662544","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external encapsulating structure","termid":"GO:0030312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"egg chorion","termid":"GO:0042600"}


id: PBO:0063022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 2","termid":"PBO:0063022"}


id: PBO:0080373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-set pre-B cell surrogate light chain 3","termid":"PBO:0080373"}


id: PBO:0087185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I termination factor; binds to rDNA terminator element, required for efficient Pol I termination; required for rDNA silencing at NTS1; facilities association of Sir2p with NTS1, contributes to rDNA stability and cell longevity; interacts physically with Fob1p and RENT subunits, Sir2p and Net1p; may interact with ribosomes, based on co-purification experiments; Myb-like DNA-binding protein; NSI1 has a paralog, REB1, that arose from the whole genome duplication","termid":"PBO:0087185"}


id: GO:1900241
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of phenotypic switching.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"regulation of phenotypic switching","termid":"GO:1900239"},{"relation_name":"positively_regulates","term_name":"phenotypic switching","termid":"GO:0036166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of phenotypic switching","synonyms":[{"name":"activation of phenotypic dimorphism","type":"related"},{"name":"activation of phenotypic switching","type":"narrow"},{"name":"positive regulation of phenotypic dimorphism","type":"related"},{"name":"up regulation of phenotypic dimorphism","type":"related"},{"name":"up regulation of phenotypic switching","type":"exact"},{"name":"up-regulation of phenotypic dimorphism","type":"related"},{"name":"up-regulation of phenotypic switching","type":"exact"},{"name":"upregulation of phenotypic dimorphism","type":"related"},{"name":"upregulation of phenotypic switching","type":"exact"}],"termid":"GO:1900241"}


id: _global:affected_by
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD_extension_relations","definition":"Identifies a gene product that influences the modification, where the experiment does not distinguish between direct action (e.g. adds or removes a modification) and indirect effects.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"affected_by","termid":"_global:affected_by"}


id: PBO:0046944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 72 member A","termid":"PBO:0046944"}


id: GO:0031331
data:
  {"annotated_genes":["SJAG_00824","SJAG_05346","SJAG_04502","SJAG_04496","SJAG_00169","SJAG_01716","SJAG_05000","SJAG_02765","SJAG_04249","SJAG_02433","SJAG_05289","SJAG_03851","SJAG_01184","SJAG_04435","SJAG_00704"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104783,104693],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000786"},{"annotations":[93690],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901098"},{"annotations":[95526,103527,90215,94953,107992,105810,110734,107098],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010508"},{"annotations":[68016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903599"},{"annotations":[94078,102374],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016239"},{"annotations":[85552],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140501"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of cellular metabolic process","termid":"GO:0031325"},{"relation_name":"is_a","term_name":"regulation of cellular catabolic process","termid":"GO:0031329"},{"relation_name":"positively_regulates","term_name":"cellular catabolic process","termid":"GO:0044248"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00704":null,"SJAG_00824":null,"SJAG_01184":null,"SJAG_01716":null,"SJAG_02433":null,"SJAG_02765":null,"SJAG_03851":null,"SJAG_04249":null,"SJAG_04435":null,"SJAG_04496":null,"SJAG_04502":null,"SJAG_05000":null,"SJAG_05289":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cellular catabolic process","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"activation of cellular catabolic process","type":"narrow"},{"name":"positive regulation of cellular breakdown","type":"exact"},{"name":"positive regulation of cellular catabolism","type":"exact"},{"name":"positive regulation of cellular degradation","type":"exact"},{"name":"stimulation of cellular catabolic process","type":"narrow"},{"name":"up regulation of cellular catabolic process","type":"exact"},{"name":"up-regulation of cellular catabolic process","type":"exact"},{"name":"upregulation of cellular catabolic process","type":"exact"}],"termid":"GO:0031331","terms_by_termid":{"GO:0010508":null,"GO:0016239":null,"GO:0140501":null,"GO:1901098":null,"GO:1903599":null,"GO:2000786":null}}


id: GO:2001266
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any Roundabout signaling pathway that is involved in axon guidance.","definition_xrefs":["PMID:21820427","PMID:14527427","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Roundabout signaling pathway","termid":"GO:0035385"},{"relation_name":"part_of","term_name":"axon guidance","termid":"GO:0007411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Roundabout signaling pathway involved in axon guidance","synonyms":[{"name":"ROBO signaling pathway involved in axon chemotaxis","type":"related"},{"name":"ROBO signaling pathway involved in axon growth cone guidance","type":"related"},{"name":"ROBO signaling pathway involved in axon guidance","type":"exact"},{"name":"ROBO signaling pathway involved in axon pathfinding","type":"exact"},{"name":"ROBO/SLIT signaling pathway involved in axon chemotaxis","type":"related"},{"name":"ROBO/SLIT signaling pathway involved in axon growth cone guidance","type":"related"},{"name":"ROBO/SLIT signaling pathway involved in axon guidance","type":"exact"},{"name":"ROBO/SLIT signaling pathway involved in axon pathfinding","type":"exact"},{"name":"Roundabout signaling pathway involved in axon chemotaxis","type":"related"},{"name":"Roundabout signaling pathway involved in axon growth cone guidance","type":"related"},{"name":"Roundabout signaling pathway involved in axon pathfinding","type":"exact"},{"name":"Roundabout signalling pathway involved in axon chemotaxis","type":"related"},{"name":"Roundabout signalling pathway involved in axon growth cone guidance","type":"related"},{"name":"Roundabout signalling pathway involved in axon guidance","type":"exact"},{"name":"Roundabout signalling pathway involved in axon pathfinding","type":"exact"}],"termid":"GO:2001266"}


id: PBO:0065741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PXN antisense RNA 1","termid":"PBO:0065741"}


id: GO:0020022
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An electron-dense acidic membrane-bounded organelle which contains a matrix of pyrophosphate and polyphosphates with bound calcium and other cations.","definition_xrefs":["GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"acidocalcisome","synonyms":[{"name":"metachromatic granule","type":"exact"},{"name":"polyphosphate vacuole","type":"related"},{"name":"volutin granule","type":"exact"}],"termid":"GO:0020022"}


id: MOD:00269
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-(sn-1-glycerophosphoryl)-L-serine.","definition_xrefs":["Unimod:419#S","RESID:AA0264","PubMed:8645220"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(sn-1-glycerophosphoryl)-L-serine","synonyms":[{"name":"O-(sn-1-glycerophosphoryl)-L-serine","type":"exact"},{"name":"(2S)-2-amino-3-[(2Xi)-2,3-dihydroxypropyl]phosphonoxypropanoic acid","type":"exact"},{"name":"Glycerophospho","type":"related"},{"name":"MOD_RES O-(sn-1-glycerophosphoryl)serine","type":"exact"},{"name":"O3-(sn-1-glycerophosphoryl)-L-serine","type":"exact"},{"name":"O3-2,3-dihydroxypropyl hydrogen phosphate-L-serine ester","type":"exact"},{"name":"O3-L-serine glyceryl-1-phosphodiester","type":"exact"},{"name":"alpha-glycerophosphoryl serine","type":"exact"},{"name":"glycerophospho","type":"related"},{"name":"glycerophosphoserine","type":"exact"}],"termid":"MOD:00269"}


id: GO:0090057
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The radial pattern formation process that results in the formation of the different tissues of the root around its radial axis.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radial pattern formation","termid":"GO:0009956"},{"relation_name":"part_of","term_name":"root development","termid":"GO:0048364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root radial pattern formation","termid":"GO:0090057"}


id: PBO:0030620
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_alpha-glucosidase_activity","termid":"PBO:0030620"}


id: PBO:0013463
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichostatin A suppresses accumulation of septated cells, but does not restore wild-type checkpoint function, in rad3delta or rad3-36 mutant","termid":"PBO:0013463"}


id: SO:0000537
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"12 or 23 nucleotide spacer between the V-heptamer and the V-nonamer of a V-gene recombination feature of an immunoglobulin/T-cell receptor gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immune_system_gene_recombination_spacer","termid":"SO:0000563"},{"relation_name":"part_of","term_name":"V_gene_recombination_feature","termid":"SO:0000538"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_spacer","synonyms":[{"name":"V spacer","type":"exact"},{"name":"V-SPACER","type":"exact"}],"termid":"SO:0000537"}


id: GO:0007195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway initiated by dopamine binding to its receptor, and ending with the regulation of a downstream cellular process.","definition_xrefs":["GOC:dph","GOC:signaling","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway","termid":"GO:0007193"},{"relation_name":"is_a","term_name":"G protein-coupled dopamine receptor signaling pathway","termid":"GO:0007212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"adenylate cyclase-inhibiting dopamine receptor signaling pathway","synonyms":[{"name":"dopamine receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"dopamine receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"exact"}],"termid":"GO:0007195"}


id: FYPO:0004138
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in telomeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000873"},{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation at telomere during vegetative growth","termid":"FYPO:0005064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at telomere during vegetative growth","synonyms":[{"name":"increased histone H3 K9 dimethylation at telomere during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at telomere during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 dimethylation at telomere during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at telomere during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at telomere during vegetative growth","type":"exact"},{"name":"increased telomeric histone H3-K9 dimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0004138"}


id: PBO:0078843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro (anticodon TGG) 5-1","termid":"PBO:0078843"}


id: PR:O42962
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cog5 gene.","definition_xrefs":["UniProtKB:O42962","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved oligomeric Golgi complex subunit 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19G7.14c","synonyms":[{"name":"COG complex subunit 5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cog5","type":"exact"}],"termid":"PR:O42962"}


id: GO:0050971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events involved in magnetoception in which a mechanical stimulus is received and converted into a molecular signal. The stimulus is in the form of torque on particles such as magnetite which respond to a magnetic field.","definition_xrefs":["GOC:ai","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of mechanical stimulus involved in sensory perception","termid":"GO:0050974"},{"relation_name":"part_of","term_name":"magnetoreception by sensory perception of mechanical stimulus","termid":"GO:0050979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of mechanical stimulus involved in magnetoreception","synonyms":[{"name":"magnetoception, sensory transduction of mechanical stimulus","type":"exact"},{"name":"magnetoreception, detection of mechanical stimulus","type":"exact"},{"name":"magnetoreception, sensory detection of mechanical stimulus","type":"exact"},{"name":"magnetoreception, sensory transduction of mechanical stimulus","type":"exact"},{"name":"sensory detection of mechanical stimulus during magnetoreception","type":"exact"},{"name":"sensory transduction of mechanical stimulus during magnetoreception","type":"exact"}],"termid":"GO:0050971"}


id: GO:0090688
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The part of the cleavage furrow closest to the cell surface.","definition_xrefs":["GOC:vw","PMID:27082518"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cleavage furrow","termid":"GO:0032154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"cleavage furrow rim","termid":"GO:0090688"}


id: GO:1904421
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a D-galactosamine stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:12057922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to D-galactosamine","termid":"GO:1904421"}


id: FYPO:0007997
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized to only the new end of a cell following cell division.","definition_xrefs":["PMID:15184402","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monopolar actin cortical patch localization during vegetative growth","termid":"FYPO:0001019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0004803","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"monopolar actin cortical patch localization to new end","termid":"FYPO:0007997"}


id: GO:0014727
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of extraocular skeletal muscle development. Extraocular skeletal muscle development is the process whose specific outcome is the progression of the extraocular skeletal muscle over time, from its formation to the mature structure. The extraocular muscle is derived from cranial mesoderm and controls eye movements. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of extraocular skeletal muscle development","termid":"GO:0014725"},{"relation_name":"is_a","term_name":"positive regulation of skeletal muscle tissue development","termid":"GO:0048643"},{"relation_name":"positively_regulates","term_name":"extraocular skeletal muscle development","termid":"GO:0002074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of extraocular skeletal muscle development","termid":"GO:0014727"}


id: PBO:0028720
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_peroxisome_size","termid":"PBO:0028720"}


id: PBO:0048991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glypican 3","termid":"PBO:0048991"}


id: GO:2000808
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle clustering.","definition_xrefs":["PMID:21513708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle clustering","termid":"GO:2000807"},{"relation_name":"negatively_regulates","term_name":"synaptic vesicle clustering","termid":"GO:0097091"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of synaptic vesicle clustering","termid":"GO:2000808"}


id: PBO:0075592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine peptidase inhibitor, Kunitz type 4","termid":"PBO:0075592"}


id: PBO:0069917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1209, pseudogene","termid":"PBO:0069917"}


id: PBO:0047801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box J1","termid":"PBO:0047801"}


id: PBO:0049407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanylyl cyclase domain containing 1","termid":"PBO:0049407"}


id: PBO:0089217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1 ubiquitin ligase complex SEL1/TPR repeat subunit","termid":"PBO:0089217"}


id: FYPO:0000138
data:
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id: GO:1901153
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id: PBO:0077741
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id: GO:0018613
data:
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id: GO:0061482
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id: PBO:0004281
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id: GO:0009206
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id: PBO:0064574
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id: PR:O13773
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id: MOD:00095
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamine residue to L-glutamine amide.","definition_xrefs":["RESID:AA0086","PubMed:7673220","PubMed:9048550"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-glutamine residue","termid":"MOD:00907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamine amide","synonyms":[{"name":"(2S)-2-aminopentanediamide","type":"exact"},{"name":"GlnN","type":"exact"},{"name":"L-glutamine amide","type":"exact"},{"name":"MOD_RES Glutamine amide","type":"exact"},{"name":"amidated L-glutamine","type":"exact"},{"name":"glutaminamide","type":"exact"}],"termid":"MOD:00095"}


id: GO:0007276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The generation and maintenance of gametes in a multicellular organism. A gamete is a haploid reproductive cell.","definition_xrefs":["GOC:ems","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"sexual reproduction","termid":"GO:0019953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gamete generation","secondary_identifiers":["GO:0009552"],"synonyms":[{"name":"gametogenesis","type":"related"}],"termid":"GO:0007276"}


id: GO:0052325
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pectin biosynthetic process","termid":"GO:0045489"},{"relation_name":"is_a","term_name":"cell wall pectin metabolic process","termid":"GO:0052546"},{"relation_name":"is_a","term_name":"cell wall polysaccharide biosynthetic process","termid":"GO:0070592"},{"relation_name":"part_of","term_name":"plant-type cell wall biogenesis","termid":"GO:0009832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0071554","GO:0044085","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"cell wall pectin biosynthetic process","synonyms":[{"name":"cell wall pectin biosynthesis","type":"exact"},{"name":"pectin biosynthesis during cell wall organization and biogenesis","type":"related"}],"termid":"GO:0052325"}


id: PBO:0030009
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-RNA_absent_from_cell","termid":"PBO:0030009"}


id: PBO:0068929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 172, pseudogene","termid":"PBO:0068929"}


id: FYPO:0006703
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of UDP measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular pentose phosphate level","termid":"FYPO:0006705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular UDP level","synonyms":[{"name":"decreased cellular UDP level during mitotic cell cycle","type":"related"},{"name":"decreased cellular UDP level during vegetative growth","type":"exact"},{"name":"reduced cellular UDP level","type":"exact"}],"termid":"FYPO:0006703"}


id: GO:0043950
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process which activates, maintains or increases the frequency, rate or extent of cAMP-mediated signaling.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cAMP-mediated signaling","termid":"GO:0043949"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"positively_regulates","term_name":"cAMP-mediated signaling","termid":"GO:0019933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cAMP-mediated signaling","synonyms":[{"name":"positive regulation of cAMP-mediated signalling","type":"exact"}],"termid":"GO:0043950"}


id: GO:2001169
data:
  {"annotated_genes":["SJAG_04422"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114179],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905706"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ATP biosynthetic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of purine nucleotide biosynthetic process","termid":"GO:1900371"},{"relation_name":"is_a","term_name":"regulation of ATP metabolic process","termid":"GO:1903578"},{"relation_name":"regulates","term_name":"ATP biosynthetic process","termid":"GO:0006754"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04422":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"regulation of ATP biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of ATP anabolism","type":"exact"},{"name":"regulation of ATP biosynthesis","type":"exact"},{"name":"regulation of ATP formation","type":"exact"},{"name":"regulation of ATP regeneration","type":"related"},{"name":"regulation of ATP synthesis","type":"exact"}],"termid":"GO:2001169","terms_by_termid":{"GO:1905706":null}}


id: PR:O74492
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 5-hydroxyisourate hydrolase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04832","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-hydroxyisourate hydrolase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC285.04","secondary_identifiers":["UniProtKB:O74492"],"synonyms":[{"name":"HIU hydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"HIUHase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-Urah","type":"exact"},{"name":"transthyretin-like protein C285.04 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74492"}


id: PBO:0028549
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_RNA_level_during_cellular_response_to_phosphate_starvation","termid":"PBO:0028549"}


id: GO:0036305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of an ameloblast, a cylindrical epithelial cell in the innermost layer of the enamel organ.","definition_xrefs":["CL:0000059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"columnar/cuboidal epithelial cell differentiation","termid":"GO:0002065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ameloblast differentiation","termid":"GO:0036305"}


id: GO:0006923
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The proteolytic degradation of cytoskeletal proteins that contributes to apoptosis, leading to the collapse of cytoskeletal structures.","definition_xrefs":["GOC:mah","GOC:mtg_apoptosis","GOC:dph","GOC:tb","ISBN:0815332181"],"gene_count":0,"genotype_count":0,"name":"obsolete cleavage of cytoskeletal proteins involved in execution phase of apoptosis (obsolete GO:0006923)","synonyms":[{"name":"apoptotic cleavage of cytoskeletal proteins","type":"exact"},{"name":"cleavage of cytoskeletal proteins involved in apoptosis","type":"broad"},{"name":"cleavage of cytoskeletal proteins involved in execution phase of apoptosis","type":"exact"}],"termid":"GO:0006923"}


id: PBO:0025502
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate carboxylase deficiency","termid":"PBO:0025502"}


id: PR:000035569
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A BUB1:BUB3 complex whose components are encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PMID:22660415","PRO:KER"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BUB1:BUB3 complex (Schizosaccharomyces pombe 972h-)","synonyms":[{"name":"Spom972h-(BUB1:BUB3)","type":"exact"}],"termid":"PR:000035569"}


id: PBO:0077901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tryptase delta 1","termid":"PBO:0077901"}


id: GO:0038087
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by vascular endothelial growth factor (VEGF) binding to an alpha-type platelet-derived growth factor receptor (PDGFR) on the surface of a cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:17470632","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"platelet-derived growth factor receptor-alpha signaling pathway","termid":"GO:0035790"},{"relation_name":"is_a","term_name":"VEGF-activated platelet-derived growth factor receptor signaling pathway","termid":"GO:0038086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"VEGF-activated platelet-derived growth factor receptor-alpha signaling pathway","synonyms":[{"name":"VEGF-A/PDGFRalpha signaling","type":"narrow"},{"name":"VEGF-activated PDGFRalpha signalling pathway","type":"exact"},{"name":"VEGF-activated platelet-derived growth factor receptor-alpha signalling pathway","type":"exact"},{"name":"VEGF/PDGFRalpha signaling pathway","type":"exact"},{"name":"vascular endothelial growth factor-activated platelet-derived growth factor receptor-alpha signaling pathway","type":"exact"}],"termid":"GO:0038087"}


id: GO:0002288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a mature or immature natural killer T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["PMID:15771592","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell activation involved in immune response","termid":"GO:0002287"},{"relation_name":"is_a","term_name":"NK T cell activation","termid":"GO:0051132"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"NK T cell activation involved in immune response","synonyms":[{"name":"NK T cell activation during immune response","type":"related"},{"name":"NK T lymphocyte activation during immune response","type":"related"},{"name":"NK T-cell activation during immune response","type":"related"},{"name":"NK T-lymphocyte activation during immune response","type":"related"},{"name":"natural killer T lymphocyte activation during immune response","type":"related"},{"name":"natural killer T-cell activation during immune response","type":"related"},{"name":"natural killer T-lymphocyte activation during immune response","type":"related"}],"termid":"GO:0002288"}


id: RO:0002018
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"w 'has process component' p if p and w are processes,  w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_component","termid":"RO:0002180"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_component_process","termid":"RO:0002018"}


id: PBO:0036322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracellular 5'-nucleotidase, human NT5E family (predicted)","termid":"PBO:0036322"}


id: FYPO:0008211
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of antisense RNA measured in a cell is lower than normal duing heat stress. Antisense RNA is transcribed from the coding, rather than the template, strand of DNA.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased antisense RNA level","termid":"FYPO:0004816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"decreased antisense RNA level during heat stress","termid":"FYPO:0008211"}


id: PBO:0080984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 20","termid":"PBO:0080984"}


id: PR:O14062
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1201 gene.","definition_xrefs":["UniProtKB:O14062","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S12-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC962.04","synonyms":[{"name":"Spom972h-rps1201","type":"exact"}],"termid":"PR:O14062"}


id: GO:2000496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cell proliferation involved in compound eye morphogenesis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of cell proliferation involved in compound eye morphogenesis","termid":"GO:2000495"},{"relation_name":"negatively_regulates","term_name":"cell proliferation involved in compound eye morphogenesis","termid":"GO:0035736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell proliferation involved in compound eye morphogenesis","termid":"GO:2000496"}


id: PBO:0051170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-54 (pseudogene)","termid":"PBO:0051170"}


id: PBO:0072662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reticulon 3 pseudogene 1","termid":"PBO:0072662"}


id: GO:1903552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of extracellular vesicular exosome assembly.","definition_xrefs":["PMID:24105262","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of organelle assembly","termid":"GO:1902116"},{"relation_name":"is_a","term_name":"regulation of extracellular exosome assembly","termid":"GO:1903551"},{"relation_name":"negatively_regulates","term_name":"extracellular exosome assembly","termid":"GO:0071971"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of extracellular exosome assembly","synonyms":[{"name":"down regulation of extracellular vesicular exosome assembly","type":"exact"},{"name":"down-regulation of extracellular vesicular exosome assembly","type":"exact"},{"name":"downregulation of extracellular vesicular exosome assembly","type":"exact"},{"name":"inhibition of extracellular vesicular exosome assembly","type":"narrow"},{"name":"negative regulation of extracellular vesicular exosome assembly","type":"exact"}],"termid":"GO:1903552"}


id: PBO:0039351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylmethionine decarboxylase 1 pseudogene 1","termid":"PBO:0039351"}


id: SO:0001799
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The heterochromatic outer repeat region of a modular centromere. These repeats exist in tandem arrays on both chromosome arms.","definition_xrefs":["SO:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"centromeric_repeat","termid":"SO:0001797"},{"relation_name":"part_of","term_name":"regional_centromere","termid":"SO:0001795"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regional_centromere_outer_repeat_region","synonyms":[{"name":"regional centromere outer repeat region","type":"exact"}],"termid":"SO:0001799"}


id: PBO:0053214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galectin 9D, pseudogene","termid":"PBO:0053214"}


id: FYPO:0005289
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the maintenance of the mitotic actomyosin contractile ring in the correct location is abnormal.","definition_xrefs":["GO:0032189","PMID:26132084","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"actomyosin contractile ring displaced from midpoint","termid":"FYPO:0002026"},{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"},{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0000032","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"actomyosin contractile ring sliding","synonyms":[{"name":"abnormal cytokinetic ring anchoring involved in mitotic cell cycle","type":"related"},{"name":"abnormal maintenance of mitotic actomyosin contractile ring localization","type":"exact"},{"name":"actomyosin contractile ring sliding during mitotic cell cycle","type":"related"},{"name":"actomyosin contractile ring sliding during vegetative growth","type":"exact"}],"termid":"FYPO:0005289"}


id: GO:0102374
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ursolic aldehyde + NADPH + O2 + H+ = ursolic acid + NADP + H2O.","definition_xrefs":["GOC:pz","PMID:22039103"],"gene_count":0,"genotype_count":0,"name":"obsolete ursolic aldehyde 28-monooxygenase activity (obsolete GO:0102374)","termid":"GO:0102374"}


id: PBO:0030998
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_degradation_during_vegetative_growth","termid":"PBO:0030998"}


id: GO:0140483
data:
  {"annotated_genes":["SJAG_00794","SJAG_03217","SJAG_04259","SJAG_04884","SJAG_04076"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91361,98536,101599,106044,109945],"is_not":false,"summary":null,"term":"GO:0140483"}]},"cv_name":"molecular_function","definition":"The binding activity of a protein that brings the kinetochore and another molecule into contact, permitting those molecules to function in a coordinated way.","definition_xrefs":["PMID:22521786"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-macromolecule adaptor activity","termid":"GO:0030674"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00794":null,"SJAG_03217":null,"SJAG_04076":null,"SJAG_04259":null,"SJAG_04884":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0030674","GO:0060090"],"is_obsolete":false,"name":"kinetochore adaptor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"inner kinetochore adaptor activity","type":"narrow"},{"name":"outer kinetochore adaptor activity","type":"narrow"}],"termid":"GO:0140483","terms_by_termid":{"GO:0140483":null}}


id: PBO:0064705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 41","termid":"PBO:0064705"}


id: PR:Q10155
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trz1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10155"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease Z 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1D4.10","synonyms":[{"name":"RNase Z 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-trz1","type":"exact"},{"name":"tRNA 3 endonuclease 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNase Z 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10155"}


id: GO:0090109
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of cell-substrate junction assembly. Cell-substrate junction assembly is the aggregation, arrangement and bonding together of a set of components to form a junction between a cell and its substrate.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-substrate junction organization","termid":"GO:0150116"},{"relation_name":"is_a","term_name":"regulation of cell junction assembly","termid":"GO:1901888"},{"relation_name":"regulates","term_name":"cell-substrate junction assembly","termid":"GO:0007044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of cell-substrate junction assembly","termid":"GO:0090109"}


id: PBO:0043842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase vitellogenic like","termid":"PBO:0043842"}


id: GO:0061427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter and stops, prevents or reduces the frequency, rate or extent of a ceramide biosynthetic process.","definition_xrefs":["PMID:15302821","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter (obsolete GO:0061427)","termid":"GO:0061427"}


id: PBO:0024862
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minor AP lyase activity detected but is not likely to be biologically relevant","termid":"PBO:0024862"}


id: PBO:0081181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger GATA like protein 1","termid":"PBO:0081181"}


id: FYPO:0004358
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein phosphatase activity is increased during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphatase activity","termid":"FYPO:0001758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000654","FYPO:0000661","FYPO:0000707"],"is_obsolete":false,"name":"increased protein phosphatase activity during mitosis","synonyms":[{"name":"increased phosphoprotein phosphatase activity during mitosis","type":"exact"},{"name":"increased protein phosphatase activity during mitotic M phase","type":"related"},{"name":"increased protein phosphatase activity during mitotic nuclear division","type":"exact"}],"termid":"FYPO:0004358"}


id: FYPO:0001572
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing L-methionine as the nitrogen source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002057","FYPO:0000139","FYPO:0002060","FYPO:0002058","FYPO:0005447"],"is_obsolete":false,"name":"abolished cell population growth on methionine nitrogen source","synonyms":[{"name":"abolished growth on methionine nitrogen source","type":"broad"},{"name":"abolished methionine utilization","type":"related"},{"name":"abolished vegetative cell population growth on methionine nitrogen source","type":"exact"},{"name":"cell population growth on methionine nitrogen source abolished","type":"exact"}],"termid":"FYPO:0001572"}


id: GO:0019588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic chemical reactions and pathways resulting in the breakdown of glycerol, yielding energy in the form of ATP.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerol catabolic process","termid":"GO:0019563"},{"relation_name":"is_a","term_name":"non-glycolytic fermentation","termid":"GO:0019662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975","GO:0006091"],"is_obsolete":false,"name":"anaerobic glycerol catabolic process","synonyms":[{"name":"glycerol fermentation","type":"exact"}],"termid":"GO:0019588"}


id: _global:interaction_genotype_b
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_relations","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interaction_genotype_b","termid":"_global:interaction_genotype_b"}


id: PBO:0075724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermidine synthase","termid":"PBO:0075724"}


id: PBO:0085710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in splicing Group I aI5-beta intron from COX1 mRNA; mitochondrial matrix protein","termid":"PBO:0085710"}


id: PBO:0077353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM92 antisense RNA 1","termid":"PBO:0077353"}


id: FYPO:0003235
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 at centromere outer repeat regions is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K9 methylation at centromere during vegetative growth","termid":"FYPO:0008070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal histone H3-K9 methylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"normal histone H3 K9 methylation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"normal histone H3-K9 methylation at centromere otr during vegetative growth","type":"exact"},{"name":"normal histone H3-K9 methylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"normal histone H3-K9 methylation at centromeric outer repeat region during vegetative growth","type":"exact"},{"name":"normal histone H3-K9 methylation at pericentric region during vegetative growth","type":"related"},{"name":"normal histone H3-K9 methylation at pericentromeric region during vegetative growth","type":"related"},{"name":"normal histone H3K9me at centromere outer repeat during vegetative growth","type":"exact"},{"name":"normal histone lysine H3 K9 methylation at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0003235"}


