# terms

id: PATO:0001540
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content.","definition_xrefs":["TO:TO"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylose composition","termid":"PATO:0001539"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutinous","termid":"PATO:0001540"}


id: GO:0045115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of beta 2 integrins.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of integrin biosynthetic process","termid":"GO:0045113"},{"relation_name":"regulates","term_name":"beta 2 integrin biosynthetic process","termid":"GO:0045114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of beta 2 integrin biosynthetic process","synonyms":[{"name":"regulation of beta 2 integrin anabolism","type":"exact"},{"name":"regulation of beta 2 integrin biosynthesis","type":"exact"},{"name":"regulation of beta 2 integrin formation","type":"exact"},{"name":"regulation of beta 2 integrin synthesis","type":"exact"}],"termid":"GO:0045115"}


id: PBO:0047831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box P2","termid":"PBO:0047831"}


id: GO:1904340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dopaminergic neuron differentiation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:15522889"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neuron differentiation","termid":"GO:0045666"},{"relation_name":"is_a","term_name":"regulation of dopaminergic neuron differentiation","termid":"GO:1904338"},{"relation_name":"positively_regulates","term_name":"dopaminergic neuron differentiation","termid":"GO:0071542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dopaminergic neuron differentiation","synonyms":[{"name":"activation of dopaminergic neuron differentiation","type":"narrow"},{"name":"up regulation of dopaminergic neuron differentiation","type":"exact"},{"name":"up-regulation of dopaminergic neuron differentiation","type":"exact"},{"name":"upregulation of dopaminergic neuron differentiation","type":"exact"}],"termid":"GO:1904340"}


id: PBO:0030577
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_vacuolar_valine_level","termid":"PBO:0030577"}


id: SO:0000281
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is engineered and foreign.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"engineered","termid":"SO:0000783"},{"relation_name":"has_quality","term_name":"foreign","termid":"SO:0000784"},{"relation_name":"is_a","term_name":"engineered_gene","termid":"SO:0000280"},{"relation_name":"is_a","term_name":"foreign_gene","termid":"SO:0000285"},{"relation_name":"is_a","term_name":"engineered_foreign_region","termid":"SO:0000805"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engineered_foreign_gene","synonyms":[{"name":"engineered foreign gene","type":"exact"}],"termid":"SO:0000281"}


id: GO:1900237
data:
  {"annotated_genes":["SJAG_01113","SJAG_04009","SJAG_06638","SJAG_00256","SJAG_03346","SJAG_03309","SJAG_02472","SJAG_04813","SJAG_02066","SJAG_05153","SJAG_03067","SJAG_04206"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83888,95581,96578,97469,99471,100557,103175,104704,104934,112448,115268,115269],"is_not":false,"summary":null,"term":"GO:1900237"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of induction of conjugation with cellular fusion.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of conjugation with cellular fusion","termid":"GO:0031139"},{"relation_name":"positively_regulates","term_name":"induction of conjugation with cellular fusion","termid":"GO:0010514"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00256":null,"SJAG_01113":null,"SJAG_02066":null,"SJAG_02472":null,"SJAG_03067":null,"SJAG_03309":null,"SJAG_03346":null,"SJAG_04009":null,"SJAG_04206":null,"SJAG_04813":null,"SJAG_05153":null,"SJAG_06638":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0000747"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0000747"}],"interesting_parent_ids":["GO:0000747","GO:0008150"],"is_obsolete":false,"name":"positive regulation of induction of conjugation with cellular fusion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"up regulation of induction of conjugation with cellular fusion","type":"exact"},{"name":"up-regulation of induction of conjugation with cellular fusion","type":"exact"},{"name":"upregulation of induction of conjugation with cellular fusion","type":"exact"}],"termid":"GO:1900237","terms_by_termid":{"GO:1900237":null}}


id: PBO:0064890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 2 regulatory subunit Bdelta","termid":"PBO:0064890"}


id: MOD:00045
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-histidine residue to pros-phospho-L-histidine (N-pi-phospho-L-histidine, 3'-phospho-L-histidine).","definition_xrefs":["PubMed:7803390","PubMed:6692818","PubMed:5642389","RESID:AA0036","PubMed:7669763","PubMed:1549615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylated L-histidine","termid":"MOD:00890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00696"}],"interesting_parent_ids":["MOD:00696"],"is_obsolete":false,"name":"3'-phospho-L-histidine","synonyms":[{"name":"(2S)-2-amino-3-(3-phosphono-3H-imidazol-4-yl)propanoic acid","type":"exact"},{"name":"2-azanyl-3-(3-phosphono-3H-imidazol-4-yl)propanoic acid","type":"exact"},{"name":"3'-phospho-L-histidine","type":"exact"},{"name":"ACT_SITE Pros-phosphohistidine intermediate","type":"exact"},{"name":"MOD_RES Pros-phosphohistidine","type":"exact"},{"name":"N(pi)-phosphohistidine","type":"exact"},{"name":"N3-phosphonohistidine","type":"exact"},{"name":"ND1-phosphonohistidine","type":"exact"},{"name":"NpPHis","type":"exact"},{"name":"Npi-phosphorylated L-histidine","type":"exact"},{"name":"Phospho","type":"related"},{"name":"Phosphorylation","type":"related"},{"name":"histidine-1-phosphate","type":"related"},{"name":"histidine-N(delta)-phosphate","type":"exact"},{"name":"histidine-N3'-phosphate","type":"exact"},{"name":"pros-phosphohistidine","type":"exact"}],"termid":"MOD:00045"}


id: GO:0045903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the ability of the translational apparatus to interpret the genetic code.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translational fidelity","termid":"GO:0006450"},{"relation_name":"is_a","term_name":"positive regulation of translation","termid":"GO:0045727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of translational fidelity","synonyms":[{"name":"activation of translational fidelity","type":"narrow"},{"name":"stimulation of translational fidelity","type":"narrow"},{"name":"up regulation of translational fidelity","type":"exact"},{"name":"up-regulation of translational fidelity","type":"exact"},{"name":"upregulation of translational fidelity","type":"exact"}],"termid":"GO:0045903"}


id: PBO:0040625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BANF1 pseudogene 4","termid":"PBO:0040625"}


id: PBO:0012547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome complex subunit alpha 3 (predicted)","termid":"PBO:0012547"}


id: PBO:0030536
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_processing","termid":"PBO:0030536"}


id: GO:1990183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A circulatory process that occurs at the level of the lymphatic vasculature.","definition_xrefs":["PMID:21576390"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular process in circulatory system","termid":"GO:0003018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphatic vascular process in circulatory system","termid":"GO:1990183"}


id: GO:0016646
data:
  {"annotated_genes":["SJAG_04156","SJAG_03712","SJAG_00106","SJAG_00120","SJAG_01126","SJAG_01198","SJAG_01061","SJAG_02388","SJAG_01668","SJAG_01466"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110218],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004146"},{"annotations":[83744],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036382"},{"annotations":[100902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004487"},{"annotations":[108569,104480,100903],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004488"},{"annotations":[94489,92708],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004489"},{"annotations":[94490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106312"},{"annotations":[92709,94491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106313"},{"annotations":[97867],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004735"},{"annotations":[83746],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042602"},{"annotations":[89020],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004754"},{"annotations":[105832],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004755"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces NAD or NADP.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors","termid":"GO:0016645"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_00120":null,"SJAG_01061":null,"SJAG_01126":null,"SJAG_01198":null,"SJAG_01466":null,"SJAG_01668":null,"SJAG_02388":null,"SJAG_03712":null,"SJAG_04156":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.5.1.-"],"termid":"GO:0016646","terms_by_termid":{"GO:0004146":null,"GO:0004487":null,"GO:0004488":null,"GO:0004489":null,"GO:0004735":null,"GO:0004754":null,"GO:0004755":null,"GO:0036382":null,"GO:0042602":null,"GO:0106312":null,"GO:0106313":null}}


id: GO:1904173
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of histone demethylase activity (H3-K4 specific).","definition_xrefs":["PMID:24843136","GOC:dph","GO_REF:0000059","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone demethylase activity (H3-K4 specific) (obsolete GO:1904173)","termid":"GO:1904173"}


id: MOD:00673
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to a methylated asparagine, such as N4-methyl-L-asparagine, or N4,N4-dimethyl-L-asparagine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-asparagine residue","termid":"MOD:00903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated asparagine","synonyms":[{"name":"MeAsn","type":"exact"}],"termid":"MOD:00673"}


id: GO:0019985
data:
  {"annotated_genes":["SJAG_03906","SJAG_00406","SJAG_04791","SJAG_00153","SJAG_02667","SJAG_00573","SJAG_04089","SJAG_04190","SJAG_16460","SJAG_00611"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94389,100105,113498],"is_not":false,"summary":null,"term":"GO:0019985"},{"annotations":[100100,99002,100339,95386,113496,98981],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070987"},{"annotations":[100101,91929,100340,99003,109722,95387,113497,98982],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042276"},{"annotations":[107908],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1904332"}]},"cv_name":"biological_process","definition":"The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide.","definition_xrefs":["GOC:elh","GOC:vw","PMID:10535901"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA synthesis involved in DNA repair","termid":"GO:0000731"},{"relation_name":"is_a","term_name":"postreplication repair","termid":"GO:0006301"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00153":null,"SJAG_00406":null,"SJAG_00573":null,"SJAG_00611":null,"SJAG_02667":null,"SJAG_03906":null,"SJAG_04089":null,"SJAG_04190":null,"SJAG_04791":null,"SJAG_16460":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006281","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"translesion synthesis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"bypass DNA synthesis","type":"exact"}],"termid":"GO:0019985","terms_by_termid":{"GO:0019985":null,"GO:0042276":null,"GO:0070987":null,"GO:1904332":null}}


id: PBO:0040196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate synthetase 1 pseudogene 9","termid":"PBO:0040196"}


id: PBO:0046593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K3 member 3","termid":"PBO:0046593"}


id: PBO:0079505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin pseudogene 3","termid":"PBO:0079505"}


id: PBO:0053166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"liver enriched antimicrobial peptide 2","termid":"PBO:0053166"}


id: PBO:0071075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 77","termid":"PBO:0071075"}


id: GO:0010449
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The increase in size or mass of a root meristem, a population of undifferentiated cells in a plant root which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into the growth of the root.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meristem growth","termid":"GO:0035266"},{"relation_name":"part_of","term_name":"root development","termid":"GO:0048364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root meristem growth","termid":"GO:0010449"}


id: PBO:0002258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine-dependent methyltransferase (predicted)","termid":"PBO:0002258"}


id: PBO:0055861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LDL receptor related protein 8","termid":"PBO:0055861"}


id: PBO:0086305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with DNA-dependent ATPase and ssDNA annealing activities; involved in maintenance of genome; interacts functionally with DNA polymerase delta; homolog of human Werner helicase interacting protein (WHIP); forms nuclear foci upon DNA replication stress","termid":"PBO:0086305"}


id: GO:1900029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ruffle assembly.","definition_xrefs":["GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120034"},{"relation_name":"is_a","term_name":"regulation of ruffle assembly","termid":"GO:1900027"},{"relation_name":"positively_regulates","term_name":"ruffle assembly","termid":"GO:0097178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of ruffle assembly","synonyms":[{"name":"positive regulation of membrane ruffle formation","type":"exact"},{"name":"positive regulation of membrane ruffling","type":"exact"},{"name":"up regulation of membrane ruffle formation","type":"exact"},{"name":"up regulation of membrane ruffling","type":"exact"},{"name":"up regulation of ruffle assembly","type":"related"}],"termid":"GO:1900029"}


id: FYPO:0003068
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at replication forks is decreased during a cellular response to hydroxyurea.","definition_xrefs":["PMID:22682245","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to chromatin during vegetative growth","termid":"FYPO:0002909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to chromatin at replication forks during cellular response to hydroxyurea","synonyms":[{"name":"decreased protein localisation to chromatin at replication forks during cellular response to hydroxyurea","type":"exact"},{"name":"decreased protein localization to chromatin at replication forks during cellular response to HU","type":"exact"},{"name":"decreased protein localization to chromatin at replication forks during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to chromatin at replication forks during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"reduced protein localization to chromatin at replication forks during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0003068"}


id: GO:0008353
data:
  {"annotated_genes":["SJAG_01654","SJAG_00150","SJAG_02592","SJAG_03967","SJAG_03061","SJAG_00342"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90422,91863,93906,102163],"is_not":false,"summary":null,"term":"GO:0008353"},{"annotations":[91864,90383,102164,105174],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140834"},{"annotations":[90384,102165,105175],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140836"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + RNA polymerase II large subunit CTD heptapeptide repeat (consensus YSPTSPS) = ADP + H+ + phosphorylated RNA polymerase II.","definition_xrefs":["GOC:mah","PMID:28248323","EC:2.7.11.23"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"},{"relation_name":"is_a","term_name":"RNA polymerase II CTD heptapeptide repeat modifying activity","termid":"GO:0140994"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_00342":null,"SJAG_01654":null,"SJAG_02592":null,"SJAG_03061":null,"SJAG_03967":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004672"}],"interesting_parent_ids":["GO:0140096","GO:0004672","GO:0003674","GO:0016740","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"RNA polymerase II CTD heptapeptide repeat kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-170706","Reactome:R-HSA-167191","Reactome:R-HSA-170704","MetaCyc:RNA-POLYMERASE-SUBUNIT-KINASE-RXN","RHEA:10216"],"synonyms":[{"name":"CTD kinase activity","type":"related"},{"name":"RNA polymerase II carboxy-terminal domain kinase activity","type":"exact"},{"name":"RNA polymerase subunit kinase activity","type":"broad"},{"name":"RNA-polymerase-subunit kinase activity","type":"broad"},{"name":"[RNA-polymerase]-subunit kinase activity","type":"broad"}],"termid":"GO:0008353","terms_by_termid":{"GO:0008353":null,"GO:0140834":null,"GO:0140836":null}}


id: PBO:0046521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane associated RNA degradation","termid":"PBO:0046521"}


id: FYPO:0003685
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain fewer U2/U5/U6 snRNP complexes than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of macromolecular complex during vegetative growth","termid":"FYPO:0003684"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased U2/U5/U6 snRNP complex level","synonyms":[{"name":"U2/U5/U6 snRNP complex present at decreased level","type":"exact"},{"name":"decreased U2-type post-mRNA release spliceosomal complex level","type":"exact"},{"name":"decreased U2/U5/U6 snRNP complex level during mitotic cell cycle","type":"related"},{"name":"decreased U2/U5/U6 snRNP complex level during vegetative growth","type":"exact"},{"name":"decreased level of U2/U5/U6 snRNP complexes","type":"related"},{"name":"reduced U2/U5/U6 snRNP complex level","type":"exact"}],"termid":"FYPO:0003685"}


id: PBO:0042667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule pseudogene 1","termid":"PBO:0042667"}


id: GO:0001777
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The non-specific expansion of T cell populations within a whole or part of an organism to reach to a total number of T cells which will then remain stable over time in the absence of an external stimulus.","definition_xrefs":["ISBN:0781735149","GOC:mgi_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell proliferation","termid":"GO:0042098"},{"relation_name":"part_of","term_name":"T cell homeostasis","termid":"GO:0043029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell homeostatic proliferation","synonyms":[{"name":"T lymphocyte homeostatic proliferation","type":"exact"},{"name":"T-cell homeostatic proliferation","type":"exact"},{"name":"T-lymphocyte homeostatic proliferation","type":"exact"},{"name":"resting T cell proliferation","type":"exact"},{"name":"resting T-cell proliferation","type":"exact"}],"termid":"GO:0001777"}


id: GO:1902137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (-)-secoisolariciresinol.","definition_xrefs":["PMID:8910615","PMID:9872995","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"diol catabolic process","termid":"GO:0034313"},{"relation_name":"is_a","term_name":"lignan catabolic process","termid":"GO:0046273"},{"relation_name":"is_a","term_name":"(-)-secoisolariciresinol metabolic process","termid":"GO:1902136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0044281"],"is_obsolete":false,"name":"(-)-secoisolariciresinol catabolic process","synonyms":[{"name":"(-)-secoisolariciresinol breakdown","type":"exact"},{"name":"(-)-secoisolariciresinol catabolism","type":"exact"},{"name":"(-)-secoisolariciresinol degradation","type":"exact"}],"termid":"GO:1902137"}


id: PR:P10815
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A G2/mitotic-specific cyclin cdc13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"G2/mitotic-specific cyclin cdc13 (Schizosaccharomyces pombe)","termid":"PR:000036302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G2/mitotic-specific cyclin cdc13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC582.03","secondary_identifiers":["UniProtKB:P10815"],"synonyms":[{"name":"SPBC582.03","type":"related"},{"name":"Spom972h-cdc13","type":"exact"}],"termid":"PR:P10815"}


id: PBO:0038286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"average_residue_weight","termid":"PBO:0038286"}


id: GO:0045705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of salivary gland determination.","definition_xrefs":["GOC:go_curators","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of salivary gland boundary specification","termid":"GO:0045704"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"salivary gland boundary specification","termid":"GO:0007432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of salivary gland boundary specification","synonyms":[{"name":"down regulation of salivary gland determination","type":"exact"},{"name":"down-regulation of salivary gland determination","type":"exact"},{"name":"downregulation of salivary gland determination","type":"exact"},{"name":"inhibition of salivary gland determination","type":"narrow"},{"name":"negative regulation of salivary gland determination","type":"exact"}],"termid":"GO:0045705"}


id: GO:0004628
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a fatty acid anion.","definition_xrefs":["EC:3.1.1.4"],"gene_count":0,"genotype_count":0,"name":"obsolete calcium-independent cytosolic phospholipase A2 activity (obsolete GO:0004628)","synonyms":[{"name":"calcium-independent cytosolic phospholipase A2 activity","type":"exact"}],"termid":"GO:0004628"}


id: PBO:0001818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b2 (L-lactate cytochrome-c oxidoreductase) (predicted)","termid":"PBO:0001818"}


id: GO:0048268
data:
  {"annotated_genes":["SJAG_00152"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95402],"is_not":false,"summary":null,"term":"GO:0048268"}]},"cv_name":"biological_process","definition":"The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage.","definition_xrefs":["PMID:9531549","GOC:jid","PMID:11460887","PMID:11977118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00152":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"clathrin coat assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"clathrin cage assembly","type":"exact"}],"termid":"GO:0048268","terms_by_termid":{"GO:0048268":null}}


id: PBO:0085413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane sterol transporter of the ATP-binding cassette family; required, along with Pdr11p, for uptake of exogenous sterols and their incorporation into the plasma membrane; activity is stimulated by phosphatidylserine; sterol uptake is required for anaerobic growth because sterol biosynthesis requires oxygen; AUS1 has a paralog, PDR11, that arose from the whole genome duplication","termid":"PBO:0085413"}


id: PBO:0017006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antibiotic biosynthesis monooxygenase-like domain (predicted)","termid":"PBO:0017006"}


id: PBO:0040944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 15","termid":"PBO:0040944"}


id: FYPO:0002966
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cytoskeleton during vegetative growth","termid":"FYPO:0003184"},{"relation_name":"is_a","term_name":"normal protein localization during mitosis","termid":"FYPO:0004328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to mitotic spindle","synonyms":[{"name":"normal protein localisation to mitotic spindle","type":"exact"},{"name":"normal protein localization to mitotic spindle during vegetative growth","type":"exact"},{"name":"normal protein localization to spindle during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002966"}


id: GO:0050508
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-O-{[(1->4)-beta-D-GlcA-(1->4)-alpha-D-GlcNAc](n)-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl}-L-seryl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-{alpha-D-GlcNAc-[(1->4)-beta-D-GlcA-(1->4)-alpha-D-GlcNAc](n)-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl}-L-seryl-[protein] + H+ + UDP.","definition_xrefs":["MetaCyc:2.4.1.224-RXN","EC:2.4.1.224","RHEA:16213"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity","secondary_identifiers":["Reactome:R-HSA-9036290","Reactome:R-HSA-3656261","Reactome:R-HSA-2022919","Reactome:R-HSA-3656254","Reactome:R-HSA-2022851","Reactome:R-HSA-9036283"],"synonyms":[{"name":"UDP-N-acetyl-D-glucosamine:beta-D-glucuronosyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"alpha-N-acetylglucosaminyltransferase II activity","type":"related"},{"name":"glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-a-N-acetylglucosaminyltransferase activity","type":"exact"},{"name":"glucuronyl-N-acetylglucosaminylproteoglycan alpha-1,4-N-acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0050508"}


id: PBO:0051259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (III)-47-1 (pseudogene)","termid":"PBO:0051259"}


id: PBO:0077293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 35B","termid":"PBO:0077293"}


id: GO:0046453
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dipyrrins (pyrromethanes), compounds containing two pyrrole rings linked through a methine, -CH=, group.","definition_xrefs":["PMID:17430001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dipyrrin metabolic process","synonyms":[{"name":"dipyrrin metabolism","type":"exact"}],"termid":"GO:0046453"}


id: PBO:0091407
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assembly at damage sites is facilitated by Swi5 independently of Rad57","termid":"PBO:0091407"}


id: PBO:0005690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxin Pex28/29 (predicted)","termid":"PBO:0005690"}


id: PBO:0054662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2068","termid":"PBO:0054662"}


id: PBO:0039184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AKAP13 antisense RNA 1","termid":"PBO:0039184"}


id: PBO:0055216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2642","termid":"PBO:0055216"}


id: GO:1903465
data:
  {"annotated_genes":["SJAG_03048","SJAG_02074","SJAG_03160","SJAG_03695"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98474],"is_not":false,"summary":null,"term":"GO:1903465"},{"annotations":[99428,113451,108186],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903468"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitotic cell cycle DNA replication.","definition_xrefs":["GOC:mtg_cell_cycle","GO_REF:0000058","GOC:TermGenie","PMID:1234"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nuclear cell cycle DNA replication","termid":"GO:0010571"},{"relation_name":"is_a","term_name":"positive regulation of mitotic cell cycle","termid":"GO:0045931"},{"relation_name":"is_a","term_name":"regulation of mitotic cell cycle DNA replication","termid":"GO:1903463"},{"relation_name":"positively_regulates","term_name":"mitotic DNA replication","termid":"GO:1902969"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02074":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03695":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006259","GO:0007049","GO:0006260","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mitotic cell cycle DNA replication","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"activation of DNA replication involved in S phase involved in mitotic cell cycle","type":"narrow"},{"name":"activation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"narrow"},{"name":"activation of mitotic cell cycle DNA replication","type":"narrow"},{"name":"activation of mitotic nuclear cell cycle DNA replication","type":"narrow"},{"name":"activation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"positive regulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"positive regulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"positive regulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"positive regulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"positive regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"up regulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"up regulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"up regulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"up regulation of mitotic cell cycle DNA replication","type":"exact"},{"name":"up regulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"up regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"up-regulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"up-regulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"up-regulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"up-regulation of mitotic cell cycle DNA replication","type":"exact"},{"name":"up-regulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"up-regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"upregulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"upregulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"upregulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"upregulation of mitotic cell cycle DNA replication","type":"exact"},{"name":"upregulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"upregulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"}],"termid":"GO:1903465","terms_by_termid":{"GO:1903465":null,"GO:1903468":null}}


id: GO:0045259
data:
  {"annotated_genes":["SJAG_02598","SJAG_MIT09","SJAG_00915","SJAG_00438","SJAG_MIT37","SJAG_03114","SJAG_02564","SJAG_03925","SJAG_00985","SJAG_00542","SJAG_00133","SJAG_07003","SJAG_00836","SJAG_05204","SJAG_02105","SJAG_04122","SJAG_MIT15"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89907,89311,104028,115250,115245,90882,97902,115239,99794],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045263"},{"annotations":[85161],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045267"},{"annotations":[99141,104916,101117,88879],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045269"},{"annotations":[103938,112010,99764],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045265"}]},"cv_name":"cellular_component","definition":"A proton-transporting two-sector ATPase complex that catalyzes the phosphorylation of ADP to ATP during oxidative phosphorylation. The complex comprises a membrane sector (F0) that carries out proton transport and a cytoplasmic compartment sector (F1) that catalyzes ATP synthesis by a rotational mechanism; the extramembrane sector (containing 3 a and 3 b subunits) is connected via the d-subunit to the membrane sector by several smaller subunits. Within this complex, the g and e subunits and the 9-12 c subunits rotate by consecutive 120 degree angles and perform parts of ATP synthesis. This movement is driven by the hydrogen ion electrochemical potential gradient.","definition_xrefs":["ISBN:0716743663","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton-transporting two-sector ATPase complex","termid":"GO:0016469"},{"relation_name":"is_a","term_name":"cation channel complex","termid":"GO:0034703"},{"relation_name":"is_a","term_name":"respiratory chain complex","termid":"GO:0098803"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_02105":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_03114":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_05204":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"proton-transporting ATP synthase complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0045255"],"synonyms":[{"name":"F1-F0 complex","type":"exact"},{"name":"hydrogen-translocating F-type ATPase complex","type":"exact"},{"name":"hydrogen-transporting ATP synthase complex","type":"exact"},{"name":"proton-transporting F-type ATPase complex","type":"related"}],"termid":"GO:0045259","terms_by_termid":{"GO:0045263":null,"GO:0045265":null,"GO:0045267":null,"GO:0045269":null}}


id: PBO:0076935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trefoil factor 3","termid":"PBO:0076935"}


id: PBO:0038328
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-obligate_parasite_of","termid":"PBO:0038328"}


id: PR:000059628
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein rhb1 (Schizosaccharomyces pombe) that is non-covalently bound to GDP.","definition_xrefs":["PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rhb1/GTP-","pombase_gene_id":"SPBC428.16c","synonyms":[{"name":"PomBase_original_PRO_term_name: GTP-binding protein rhb1, GDP-bound form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Rhb1/GTP-","type":"exact"},{"name":"Spom-rhb1/GDP+","type":"exact"}],"termid":"PR:000059628"}


id: CHEBI:3259
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCCP","termid":"CHEBI:3259"}


id: PBO:0017954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial respiratory chain complex II assembly ACN9 family protein Sdh7 (predicted)","termid":"PBO:0017954"}


id: PBO:0090481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-A chaperone, CHD family Hrp1","termid":"PBO:0090481"}


id: GO:1904259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of basement membrane assembly involved in embryonic body morphogenesis.","definition_xrefs":["PMID:23940118","GOC:als","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of embryonic development","termid":"GO:0045995"},{"relation_name":"is_a","term_name":"regulation of basement membrane organization","termid":"GO:0110011"},{"relation_name":"is_a","term_name":"regulation of extracellular matrix assembly","termid":"GO:1901201"},{"relation_name":"regulates","term_name":"basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:2001197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"regulation of basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:1904259"}


id: PBO:0039238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"albumin","termid":"PBO:0039238"}


id: GO:0007217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by tachykinin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process. Tachykinin is a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2).","definition_xrefs":["GOC:mah","PMID:14723970"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"tachykinin receptor signaling pathway","synonyms":[{"name":"tachykinin signalling pathway","type":"exact"}],"termid":"GO:0007217"}


id: PBO:0038545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 16B","termid":"PBO:0038545"}


id: PR:Q10058
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1F5.03c gene.","definition_xrefs":["UniProtKB:Q10058","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidoreductase C1F5.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F5.03c","synonyms":[{"name":"Spom972h-SPAC1F5.03c","type":"exact"}],"termid":"PR:Q10058"}


id: GO:0000181
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cytosolic small ribosomal subunit (obsolete GO:0000181)","synonyms":[{"name":"cytosolic small ribosomal subunit","type":"exact"}],"termid":"GO:0000181"}


id: PBO:0069170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 422, pseudogene","termid":"PBO:0069170"}


id: PBO:0044647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dopachrome tautomerase","termid":"PBO:0044647"}


id: PBO:0027244
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_polyadenylated_5.8S_rRNA_level","termid":"PBO:0027244"}


id: GO:0050589
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: leucocyanidin + 2-oxoglutarate + O2 = cis- or trans-dihydroquercetin + succinate + CO2 + 2 H2O.","definition_xrefs":["EC:1.14.20.4","MetaCyc:1.14.11.19-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"leucocyanidin oxygenase activity","secondary_identifiers":["MetaCyc:RXN-602","GO:0045432"],"synonyms":[{"name":"anthocyanidin synthase activity","type":"related"},{"name":"leucoanthocyanidin dioxygenase activity","type":"related"},{"name":"leucoanthocyanidin hydroxylase","type":"related"},{"name":"leucocyanidin,2-oxoglutarate:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0050589"}


id: GO:0004706
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: JNKK + ATP = JNKK phosphate + ADP. This reaction is the phosphorylation and activation of JUN kinase kinases (JNKKs).","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MAP kinase kinase kinase activity","termid":"GO:0004709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0140096","GO:0004672","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"JUN kinase kinase kinase activity","secondary_identifiers":["EC:2.7.11.25"],"synonyms":[{"name":"JNK kinase kinase activity","type":"related"},{"name":"JNKKK","type":"exact"}],"termid":"GO:0004706"}


id: GO:0106387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of guanosine 5'-monophosphate (GMP) through an inosine 5'-monophosphate (IMP) intermediate.","definition_xrefs":["PMID:25605736"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GMP biosynthetic process","termid":"GO:0006177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"'de novo' GMP biosynthetic process","synonyms":[{"name":"'de novo' guanosine 5'-monophosphate biosynthetic process","type":"exact"}],"termid":"GO:0106387"}


id: PBO:0069823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1109, pseudogene","termid":"PBO:0069823"}


id: PBO:0079090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr (anticodon GTA) 5-3","termid":"PBO:0079090"}


id: PBO:0110231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rixosome complex WD repeat subunit Crb3","termid":"PBO:0110231"}


id: GO:0008784
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-alanine = D-alanine.","definition_xrefs":["EC:5.1.1.1","RHEA:20249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"alanine racemase activity","secondary_identifiers":["MetaCyc:ALARACECAT-RXN","KEGG_REACTION:R00401"],"synonyms":[{"name":"L-alanine racemase activity","type":"related"}],"termid":"GO:0008784"}


id: GO:0042744
data:
  {"annotated_genes":["SJAG_01216","SJAG_01199","SJAG_04823","SJAG_04953","SJAG_00141","SJAG_02515","SJAG_03166"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91244,96083,101155,104962,112904,113544,114462],"is_not":false,"summary":null,"term":"GO:0042744"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrogen peroxide metabolic process","termid":"GO:0042743"},{"relation_name":"is_a","term_name":"cellular catabolic process","termid":"GO:0044248"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_02515":null,"SJAG_03166":null,"SJAG_04823":null,"SJAG_04953":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"hydrogen peroxide catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"H2O2 catabolic process","type":"exact"},{"name":"H2O2 scavenging","type":"related"},{"name":"detoxification of H2O2","type":"related"},{"name":"detoxification of hydrogen peroxide","type":"related"},{"name":"hydrogen peroxide breakdown","type":"exact"},{"name":"hydrogen peroxide catabolism","type":"exact"},{"name":"hydrogen peroxide degradation","type":"exact"},{"name":"hydrogen peroxide removal","type":"related"},{"name":"hydrogen peroxide scavenging","type":"related"}],"termid":"GO:0042744","terms_by_termid":{"GO:0042744":null}}


id: FYPO:0002031
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of actin cables is abnormal. Actin cables are parallel actin filament bundles nucleated by formin, and are the most common form of actin filament bundles found in yeasts.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton morphology during vegetative growth","termid":"FYPO:0000350"},{"relation_name":"is_a","term_name":"abnormal actin cables","termid":"FYPO:0002435"},{"relation_name":"output_of","term_name":"abnormal actin cable organization","termid":"FYPO:0002030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0004803"],"is_obsolete":false,"name":"abnormal actin cable morphology","synonyms":[{"name":"abnormal actin cable morphology during mitotic cell cycle","type":"related"},{"name":"abnormal actin cable morphology during vegetative growth","type":"exact"},{"name":"abnormal formin-nucleated actin cable morphology","type":"exact"},{"name":"disorganized actin cables","type":"exact"}],"termid":"FYPO:0002031"}


id: GO:1905395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a flavonoid stimulus.","definition_xrefs":["GO_REF:0000071","PMID:22700048","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to flavonoid","termid":"GO:1905395"}


id: GO:0018524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: acetophenone + CO2 = H+ + benzoyl acetate.","definition_xrefs":["UM-BBD_reactionID:r0033"],"gene_count":0,"genotype_count":0,"name":"obsolete acetophenone carboxylase activity (obsolete GO:0018524)","termid":"GO:0018524"}


id: PBO:0039392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AMZ2 pseudogene 1","termid":"PBO:0039392"}


id: PR:Q9Y812
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3-like centromeric protein cnp1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["UniProtKB:Q9Y812","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"histone H3-like centromeric protein cnp1 (Schizosaccharomyces pombe)","termid":"PR:000041369"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3-like centromeric protein cnp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1105.17","synonyms":[{"name":"CENP-A homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cnp1","type":"exact"},{"name":"centromere protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"silencing in the middle of the centromere protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y812"}


id: GO:0001547
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Increase in size of antral follicles due to cell proliferation and/or growth of the antral cavity.","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"ovulation cycle process","termid":"GO:0022602"},{"relation_name":"is_a","term_name":"developmental growth","termid":"GO:0048589"},{"relation_name":"part_of","term_name":"ovarian follicle development","termid":"GO:0001541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antral ovarian follicle growth","termid":"GO:0001547"}


id: GO:0052648
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ribitol phosphates, any phosphorylated form of ribitol, the pentitol derived formally by reduction of the -CHO group of either D- or L-ribose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentitol phosphate metabolic process","termid":"GO:0052647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ribitol phosphate metabolic process","synonyms":[{"name":"ribitol phosphate metabolism","type":"exact"}],"termid":"GO:0052648"}


id: FYPO:0005676
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the deubiquitination of one or more specific proteins, or of specific protein sites, does not occur after cells have been exposed to methyl methanesulfonate.","definition_xrefs":["PomBase:mah","PMID:27151298"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein modification during vegetative growth","termid":"FYPO:0000544"},{"relation_name":"is_a","term_name":"abolished proteolysis during vegetative growth","termid":"FYPO:0005377"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0002274","FYPO:0000002","FYPO:0002494","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein deubiquitination following cellular response to methyl methanesulfonate during vegetative growth","synonyms":[{"name":"abolished protein deubiquitination during cellular response to methyl methanesulfonate","type":"related"},{"name":"abolished protein deubiquitination following cellular response to MMS","type":"exact"},{"name":"abolished protein deubiquitination following cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"abolished protein deubiquitylation following cellular response to methyl methanesulfonate","type":"exact"},{"name":"protein deubiquitination following cellular response to methyl methanesulfonate abolished","type":"exact"}],"termid":"FYPO:0005676"}


id: MOD:00122
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-tyrosine residue by a thioether bond to form 2-(S-L-cysteinyl)-L-tyrosine.","definition_xrefs":["PubMed:15917234","PubMed:2002850","DeltaMass:0","RESID:AA0113"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioether crosslinked residues","termid":"MOD:00687"},{"relation_name":"is_a","term_name":"crosslinked L-tyrosine residue","termid":"MOD:02058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-(S-L-cysteinyl)-L-tyrosine","synonyms":[{"name":"(2S)-2-amino-3-(3-[(2R)2-amino-2-carboxyethylsulfanyl]-4-hydroxyphenyl)propanoic acid","type":"exact"},{"name":"2-amino-3-[3-(2-amino-2-carboxyethylthio)-4-hydroxyphenyl]propanoic acid","type":"exact"},{"name":"3'-(L-cystein-S-yl)-L-tyrosine","type":"exact"},{"name":"3'-(cystein-S-yl)tyrosine","type":"exact"},{"name":"CROSSLNK 3'-(S-cysteinyl)-tyrosine (Cys-Tyr)","type":"exact"},{"name":"CROSSLNK 3'-(S-cysteinyl)-tyrosine (Tyr-Cys)","type":"exact"},{"name":"S-(3-Tyr) (Crosslinked to Cysteine)","type":"exact"},{"name":"S-(tyros-3'-yl)cysteine","type":"exact"},{"name":"XLNK-SCys-3'Tyr","type":"exact"}],"termid":"MOD:00122"}


id: GO:0043865
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of methionine from one side of a membrane to the other.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur amino acid transmembrane transporter activity","termid":"GO:0000099"},{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"methionine transmembrane transporter activity","secondary_identifiers":["GO:1990240"],"synonyms":[{"name":"methionine importer","type":"related"},{"name":"methionine importer activity","type":"narrow"},{"name":"methionine importing activity","type":"narrow"},{"name":"methionine-importing activity","type":"narrow"}],"termid":"GO:0043865"}


id: GO:0016433
data:
  {"annotated_genes":["SJAG_01958","SJAG_02821","SJAG_03016","SJAG_03289","SJAG_03713"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83457,94936],"is_not":false,"summary":null,"term":"GO:0016433"},{"annotations":[105230],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052909"},{"annotations":[91238],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052907"},{"annotations":[94484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106142"},{"annotations":[59260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000179"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methyladenine.","definition_xrefs":["GOC:go-curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA methyltransferase activity","termid":"GO:0008649"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01958":null,"SJAG_02821":null,"SJAG_03016":null,"SJAG_03289":null,"SJAG_03713":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0140098","GO:0003674","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"rRNA (adenine) methyltransferase activity","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"termid":"GO:0016433","terms_by_termid":{"GO:0000179":null,"GO:0016433":null,"GO:0052907":null,"GO:0052909":null,"GO:0106142":null}}


id: GO:0009656
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Pigment-protein complex primarily associated to PSII in plants, green algae and cyanobacteria. Involved in state transitions that cause migration to PSI under certain environmental conditions such as high light.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloroplast thylakoid membrane protein complex","termid":"GO:0098807"},{"relation_name":"part_of","term_name":"PSII associated light-harvesting complex II","termid":"GO:0009517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"PSII associated light-harvesting complex II, peripheral complex","termid":"GO:0009656"}


id: GO:0060058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process of mammary epithelial cells during mammary gland involution.","definition_xrefs":["GOC:mtg_apoptosis","GOC:dph","PMID:15282149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of apoptotic process involved in morphogenesis","termid":"GO:1902339"},{"relation_name":"positively_regulates","term_name":"apoptotic process involved in mammary gland involution","termid":"GO:0060057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of apoptotic process involved in mammary gland involution","synonyms":[{"name":"positive regulation of apoptosis involved in mammary gland involution","type":"narrow"}],"termid":"GO:0060058"}


id: GO:0007249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An intracellular signaling cassette characterized by the I-kappaB-kinase (IKK)-dependent activation of NF-kappaB, also known as the canonical NF-kappaB signaling cascade. The cascade begins with activation of a trimeric IKK complex (consisting of catalytic kinase subunits IKKalpha and/or IKKbeta, and the regulatory scaffold protein NEMO) and ends with the regulation of transcription of target genes by NF-kappaB. In a resting state, NF-kappaB dimers are bound to I-kappaB proteins, sequestering NF-kappaB in the cytoplasm. Phosphorylation of I-kappaB targets I-kappaB for ubiquitination and proteasomal degradation, thus releasing the NF-kappaB dimers, which can translocate to the nucleus to bind DNA and regulate transcription. The canonical NF-kappaB pathway is mainly stimulated by proinflammatory cytokines such as IL-1beta, tumor necrosis factor (TNF)-alpha, antigen ligands, and toll-like receptors (TLRs).","definition_xrefs":["GOC:bf","PMID:12773372","PMID:34659217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signaling cassette","termid":"GO:0141124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"canonical NF-kappaB signal transduction","synonyms":[{"name":"I-kappaB kinase/NF-kappaB cascade","type":"exact"},{"name":"I-kappaB kinase/NF-kappaB signal transduction","type":"exact"},{"name":"I-kappaB kinase/NF-kappaB signaling","type":"exact"},{"name":"NF-kappaB cascade","type":"broad"},{"name":"canonical NF-kappaB signaling cascade","type":"exact"},{"name":"p50-dependent NF-kappaB signaling","type":"related"}],"termid":"GO:0007249"}


id: GO:0001711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell differentiation process that results in commitment of a cell to become part of the endoderm.","definition_xrefs":["ISBN:0878932437","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate commitment involved in formation of primary germ layer","termid":"GO:0060795"},{"relation_name":"part_of","term_name":"endodermal cell differentiation","termid":"GO:0035987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endodermal cell fate commitment","synonyms":[{"name":"endoderm cell fate commitment","type":"exact"}],"termid":"GO:0001711"}


id: PBO:0038505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily D member 1","termid":"PBO:0038505"}


id: FYPO:0003842
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that undergoes a single round of cell division in which mitotic sister chromatid separation does not occur, and then dies.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"abolished mitotic sister chromatid separation","termid":"FYPO:0001946"},{"relation_name":"is_a","term_name":"abolished mitotic sister chromatid separation","termid":"FYPO:0001946"},{"relation_name":"is_a","term_name":"inviable after spore germination, single cell division","termid":"FYPO:0002280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000641","FYPO:0001320","FYPO:0000337","FYPO:0000631","FYPO:0005447","FYPO:0000004"],"is_obsolete":false,"name":"inviable following spore germination, single cell division, abolished mitotic sister chromatid separation","synonyms":[{"name":"inviable germinated spore, single cell division, abolished mitotic sister chromatid separation","type":"exact"},{"name":"lethal; following spore germination, single cell division, abolished mitotic sister chromatid separation","type":"exact"}],"termid":"FYPO:0003842"}


id: GO:1904985
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of quinolinate biosynthetic process.","definition_xrefs":["GOC:bf","GOC:TermGenie","GO_REF:0000058","GOC:PARL","PMID:12140278","PMID:19843166"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of quinolinate biosynthetic process","termid":"GO:1904984"},{"relation_name":"negatively_regulates","term_name":"quinolinate biosynthetic process","termid":"GO:0019805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of quinolinate biosynthetic process","synonyms":[{"name":"down regulation of quinolinate anabolism","type":"exact"},{"name":"down regulation of quinolinate biosynthesis","type":"exact"},{"name":"down regulation of quinolinate biosynthetic process","type":"exact"},{"name":"down regulation of quinolinate formation","type":"exact"},{"name":"down regulation of quinolinate synthesis","type":"exact"},{"name":"down-regulation of quinolinate anabolism","type":"exact"},{"name":"down-regulation of quinolinate biosynthesis","type":"exact"},{"name":"down-regulation of quinolinate biosynthetic process","type":"exact"},{"name":"down-regulation of quinolinate formation","type":"exact"},{"name":"down-regulation of quinolinate synthesis","type":"exact"},{"name":"downregulation of quinolinate anabolism","type":"exact"},{"name":"downregulation of quinolinate biosynthesis","type":"exact"},{"name":"downregulation of quinolinate biosynthetic process","type":"exact"},{"name":"downregulation of quinolinate formation","type":"exact"},{"name":"downregulation of quinolinate synthesis","type":"exact"},{"name":"inhibition of quinolinate anabolism","type":"narrow"},{"name":"inhibition of quinolinate biosynthesis","type":"narrow"},{"name":"inhibition of quinolinate biosynthetic process","type":"narrow"},{"name":"inhibition of quinolinate formation","type":"narrow"},{"name":"inhibition of quinolinate synthesis","type":"narrow"},{"name":"negative regulation of quinolinate anabolism","type":"exact"},{"name":"negative regulation of quinolinate biosynthesis","type":"exact"},{"name":"negative regulation of quinolinate formation","type":"exact"},{"name":"negative regulation of quinolinate synthesis","type":"exact"}],"termid":"GO:1904985"}


id: FYPO:0006555
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of two or more proteins to DNA is abnormal. The proteins may bind simultaneously or sequentially, but both or all would normally be present together on DNA at some time. One affected gene product may be encoded by the mutated gene, or all may be encoded by different genes.","definition_xrefs":["PMID:20924116","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA binding","termid":"FYPO:0000656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000653"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707","FYPO:0000653"],"is_obsolete":false,"name":"abnormal multiple protein binding to DNA","synonyms":[{"name":"abnormal cooperative DNA binding","type":"related"},{"name":"abnormal protein-DNA ternary complex formation","type":"narrow"},{"name":"abnormal protein-protein interaction on DNA","type":"related"},{"name":"abnormal ternary complex formation","type":"related"},{"name":"abolished protein-DNA ternary complex formation","type":"narrow"},{"name":"abolished ternary complex formation","type":"related"}],"termid":"FYPO:0006555"}


id: PBO:0072321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 7","termid":"PBO:0072321"}


id: PBO:0059441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane spanning 4-domains A12","termid":"PBO:0059441"}


id: PBO:0065831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB7A, member RAS oncogene family","termid":"PBO:0065831"}


id: GO:0035016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The increase in length of the aristal laterals. The arista is the terminal segment of the antenna and consists of a central core and a series of lateral extensions.","definition_xrefs":["GOC:bf","PMID:11404081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"},{"relation_name":"part_of","term_name":"antennal morphogenesis","termid":"GO:0048800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"elongation of arista lateral","termid":"GO:0035016"}


id: MOD:00428
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces two hydrogen atoms with two hydroxyl groups.","definition_xrefs":["Unimod:425","PubMed:12686488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxylated residue","termid":"MOD:00677"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroxylated residue","synonyms":[{"name":"Dioxidation","type":"related"},{"name":"Hy2Res","type":"exact"},{"name":"dihydroxy","type":"related"}],"termid":"MOD:00428"}


id: PR:Q10149
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- grh1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1D4.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1D4.02c","synonyms":[{"name":"Spom972h-grh1","type":"exact"}],"termid":"PR:Q10149"}


id: PBO:0044896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEP domain containing MTOR interacting protein","termid":"PBO:0044896"}


id: PATO:0001732
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shedability","termid":"PATO:0001729"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-deciduous (any body part)","termid":"PATO:0001732"}


id: GO:1903845
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to transforming growth factor beta stimulus.","definition_xrefs":["PMID:22269326","GOC:rph","GO_REF:0000058","GOC:BHF","GOC:TermGenie","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular response to growth factor stimulus","termid":"GO:0090288"},{"relation_name":"is_a","term_name":"regulation of cellular response to transforming growth factor beta stimulus","termid":"GO:1903844"},{"relation_name":"negatively_regulates","term_name":"cellular response to transforming growth factor beta stimulus","termid":"GO:0071560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellular response to transforming growth factor beta stimulus","synonyms":[{"name":"down regulation of cellular response to TGF-beta stimulus","type":"exact"},{"name":"down regulation of cellular response to TGFbeta stimulus","type":"exact"},{"name":"down regulation of cellular response to transforming growth factor beta stimulus","type":"exact"},{"name":"down-regulation of cellular response to TGF-beta stimulus","type":"exact"},{"name":"down-regulation of cellular response to TGFbeta stimulus","type":"exact"},{"name":"down-regulation of cellular response to transforming growth factor beta stimulus","type":"exact"},{"name":"downregulation of cellular response to TGF-beta stimulus","type":"exact"},{"name":"downregulation of cellular response to TGFbeta stimulus","type":"exact"},{"name":"downregulation of cellular response to transforming growth factor beta stimulus","type":"exact"},{"name":"inhibition of cellular response to TGF-beta stimulus","type":"narrow"},{"name":"inhibition of cellular response to TGFbeta stimulus","type":"narrow"},{"name":"inhibition of cellular response to transforming growth factor beta stimulus","type":"narrow"},{"name":"negative regulation of cellular response to TGF-beta stimulus","type":"exact"},{"name":"negative regulation of cellular response to TGFbeta stimulus","type":"exact"}],"termid":"GO:1903845"}


id: GO:1905498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of triplex DNA binding.","definition_xrefs":["GO_REF:0000059","PMID:26503245","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA binding","termid":"GO:0043388"},{"relation_name":"is_a","term_name":"regulation of triplex DNA binding","termid":"GO:1905496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of triplex DNA binding","synonyms":[{"name":"activation of triplex DNA binding","type":"narrow"},{"name":"up regulation of triplex DNA binding","type":"exact"},{"name":"up-regulation of triplex DNA binding","type":"exact"},{"name":"upregulation of triplex DNA binding","type":"exact"}],"termid":"GO:1905498"}


id: GO:0035686
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoskeletal structure surrounding the axoneme and outer dense fibers of the sperm flagellum. Consists of two longitudinal columns connected by closely arrayed semicircular ribs that assemble from distal to proximal throughout spermiogenesis. The fibrous sheath probably influences the degree of flexibility, plane of flagellar motion, and the shape of the flagellar beat.","definition_xrefs":["PMID:3282552","GOC:cilia","GOC:BHF","GOC:krc","PMID:20731842"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"sperm flagellum","termid":"GO:0036126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"sperm fibrous sheath","synonyms":[{"name":"flagellar fibrous sheath","type":"exact"},{"name":"flagellum fibrous sheath","type":"exact"}],"termid":"GO:0035686"}


id: PBO:0058944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIX23 pseudogene 3","termid":"PBO:0058944"}


id: GO:0046977
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to TAP protein, transporter associated with antigen processing protein. TAP protein is a heterodimeric peptide transporter consisting of the subunits TAP1 and TAP2.","definition_xrefs":["PMID:11133832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"TAP binding","termid":"GO:0046977"}


id: GO:0042193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of methylmercury (MeHg+), a highly toxic organometal.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"methylmercury metabolic process","termid":"GO:0042191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"methylmercury catabolic process","synonyms":[{"name":"methylmercury breakdown","type":"exact"},{"name":"methylmercury catabolism","type":"exact"},{"name":"methylmercury degradation","type":"exact"}],"termid":"GO:0042193"}


id: FYPO:0004649
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle pole body during metaphase does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to mitotic spindle pole body during mitosis","termid":"FYPO:0006825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to mitotic spindle pole body during metaphase","synonyms":[{"name":"abolished protein localization to spindle pole body during metaphase during mitotic cell cycle","type":"exact"},{"name":"protein absent from mitotic spindle pole body during metaphase","type":"related"},{"name":"protein localisation to mitotic spindle pole body abolished during metaphase","type":"exact"},{"name":"protein localization to mitotic SPB abolished during metaphase","type":"exact"},{"name":"protein localization to mitotic spindle pole body abolished during metaphase","type":"exact"},{"name":"protein localization to spindle pole body abolished during metaphase during vegetative growth","type":"exact"}],"termid":"FYPO:0004649"}


id: GO:0008359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the process in which bicoid mRNA is transported to, or maintained in, a specific location.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular mRNA localization","termid":"GO:1904580"},{"relation_name":"regulates","term_name":"bicoid mRNA localization","termid":"GO:0045450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of bicoid mRNA localization","synonyms":[{"name":"regulation of bicoid mRNA localisation","type":"exact"}],"termid":"GO:0008359"}


id: GO:0000478
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any endonucleolytic cleavage involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule. Some endonucleolytic cleavages produce the mature end, while others are a step in the process of generating the mature end from the pre-rRNA.","definition_xrefs":["GOC:krc","PMID:10690410"],"gene_count":0,"genotype_count":0,"name":"obsolete endonucleolytic cleavage involved in rRNA processing (obsolete GO:0000478)","synonyms":[{"name":"endonucleolytic cleavage during rRNA processing","type":"related"}],"termid":"GO:0000478"}


id: GO:0102571
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-O-(N-acetyl-beta-D-glucosaminyl)-L-seryl/L-threonyl-[protein] + H2O = L-seryl//L-threonyl-[protein] + N-acetyl-D-glucosamine.","definition_xrefs":["EC:3.2.1.169"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0016787","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"[protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine/L-threonine O-N-acetyl-alpha-D-glucosaminase activity","secondary_identifiers":["MetaCyc:RXN-15215"],"termid":"GO:0102571"}


id: PBO:0059873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myotubularin related protein 10","termid":"PBO:0059873"}


id: PBO:0074021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 14 pseudogene 1","termid":"PBO:0074021"}


id: GO:0042206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of halogenated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with halogen atoms.","definition_xrefs":["GOC:ai","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"halogenated hydrocarbon metabolic process","termid":"GO:0042197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"halogenated hydrocarbon catabolic process","synonyms":[{"name":"halogenated hydrocarbon breakdown","type":"exact"},{"name":"halogenated hydrocarbon catabolism","type":"exact"},{"name":"halogenated hydrocarbon degradation","type":"exact"}],"termid":"GO:0042206"}


id: SO:0000814
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a region's ability, when introduced to a mutant organism, to re-establish (rescue) a phenotype.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_attribute","termid":"SO:0000733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rescue","termid":"SO:0000814"}


id: GO:0009147
data:
  {"annotated_genes":["SJAG_00533","SJAG_03676","SJAG_02887","SJAG_04665","SJAG_04627","SJAG_04657","SJAG_03708","SJAG_04487","SJAG_00885","SJAG_05024"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044210"},{"annotations":[96153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006241"},{"annotations":[110115],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046036"},{"annotations":[88996,111071],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[88461,114199,85410],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"},{"annotations":[95067],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"},{"annotations":[103389],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009212"},{"annotations":[96155],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006228"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyrimidine nucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate metabolic process","termid":"GO:0009141"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00533":null,"SJAG_00885":null,"SJAG_02887":null,"SJAG_03676":null,"SJAG_03708":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04657":null,"SJAG_04665":null,"SJAG_05024":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"pyrimidine nucleoside triphosphate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine nucleoside triphosphate metabolism","type":"exact"}],"termid":"GO:0009147","terms_by_termid":{"GO:0006228":null,"GO:0006235":null,"GO:0006241":null,"GO:0009212":null,"GO:0044210":null,"GO:0044211":null,"GO:0046036":null,"GO:0046081":null}}


id: GO:0017169
data:
  {"annotated_genes":["SJAG_00168","SJAG_04319","SJAG_00999","SJAG_01233"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109178],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008444"},{"annotations":[88171],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003881"},{"annotations":[110839],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003882"},{"annotations":[89085],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004142"},{"annotations":[89086],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004307"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: CDP + alcohol = CMP + phosphatidyl alcohol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00168":null,"SJAG_00999":null,"SJAG_01233":null,"SJAG_04319":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016780","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"CDP-alcohol phosphatidyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0017169","terms_by_termid":{"GO:0003881":null,"GO:0003882":null,"GO:0004142":null,"GO:0004307":null,"GO:0008444":null}}


id: FYPO:0005327
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the repair of cyclobutane pyrimidine dimers by error-free translesion synthesis does not occur.","definition_xrefs":["PMID:20453833","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal error-free translesion synthesis","termid":"FYPO:0005323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000298","FYPO:0001320","FYPO:0000002","FYPO:0000293","FYPO:0001985"],"is_obsolete":false,"name":"abolished error-free translesion synthesis of cyclobutane pyrimidine dimers","synonyms":[{"name":"abolished error-free translesion synthesis across TT-CPD","type":"exact"},{"name":"abolished error-free translesion synthesis of cyclobutane pyrimidine dimers during mitotic cell cycle","type":"related"},{"name":"abolished error-free translesion synthesis of cyclobutane pyrimidine dimers during vegetative growth","type":"exact"},{"name":"error-free translesion synthesis of cyclobutane pyrimidine dimers abolished","type":"related"}],"termid":"FYPO:0005327"}


id: PBO:0042075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 144B, pseudogene","termid":"PBO:0042075"}


id: PBO:0080029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 15","termid":"PBO:0080029"}


id: PBO:0063116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(ADP-ribose) polymerase 2","termid":"PBO:0063116"}


id: MOD:00575
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:361","PubMed:15174056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidized threonine biotinylated with biotin hydrazide","synonyms":[{"name":"Thrbiotinhydrazide","type":"related"},{"name":"oxidized Threonine biotinylated with biotin hydrazide","type":"related"}],"termid":"MOD:00575"}


id: GO:0033624
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of integrin activation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"regulation of integrin activation","termid":"GO:0033623"},{"relation_name":"negatively_regulates","term_name":"integrin activation","termid":"GO:0033622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"negative regulation of integrin activation","synonyms":[{"name":"negative regulation of integrin complex activation","type":"exact"}],"termid":"GO:0033624"}


id: PBO:0028188
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cell_population_growth_on_raffinose_carbon_source","termid":"PBO:0028188"}


id: PBO:0057185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 340","termid":"PBO:0057185"}


id: FYPO:0002928
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which polyadenylated RNA molecules have poly(A) tails of normal (i.e. indistinguishable from wild type) length.","definition_xrefs":["PomBase:mah","PMID:24081329"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal poly(A) tail length","synonyms":[{"name":"normal polyA sequence length","type":"exact"},{"name":"normal polyA tail length","type":"exact"}],"termid":"FYPO:0002928"}


id: PBO:0000622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIID complex subunit Taf111","termid":"PBO:0000622"}


id: PBO:0030084
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_cell_tip","termid":"PBO:0030084"}


id: PBO:0078462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyrotropin releasing hormone","termid":"PBO:0078462"}


id: FYPO:0000792
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glycerol dehydrogenase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal glycerol dehydrogenase activity","termid":"FYPO:0000792"}


id: PR:P36614
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein phosphatase 6 catalytic subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11668:SF24","PRO:DNx","OMA:SCHPO04922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein phosphatase ppe1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.12","secondary_identifiers":["UniProtKB:P36614"],"synonyms":[{"name":"Spom972h-PPP6C","type":"exact"},{"name":"phosphatase esp1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P36614"}


id: PR:Q9P7V2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- abc4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7V2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-binding cassette transporter abc4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC30.04c","synonyms":[{"name":"ABC transporter abc4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ATP-energized glutathione S-conjugate pump abc4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-abc4","type":"exact"},{"name":"glutathione S-conjugate-transporting ATPase abc4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7V2"}


id: PBO:0081708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 628","termid":"PBO:0081708"}


id: GO:0018479
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: benzaldehyde + NAD+ + H2O = benzoate + NADH + H+.","definition_xrefs":["EC:1.2.1.28"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NAD+) activity","termid":"GO:0004029"},{"relation_name":"is_a","term_name":"benzaldehyde dehydrogenase [NAD(P)+] activity","termid":"GO:0019115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"benzaldehyde dehydrogenase (NAD+) activity","secondary_identifiers":["UM-BBD_reactionID:r0269","RHEA:11840","MetaCyc:BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN"],"synonyms":[{"name":"benzaldehyde (NAD) dehydrogenase activity","type":"related"},{"name":"benzaldehyde:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0018479"}


id: PBO:0046550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group H member 4","termid":"PBO:0046550"}


id: GO:0051778
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ent-7-alpha-hydroxykaurenoate + NADPH + H+ + O2 = gibberellin 12-aldehyde + NADP+ + 2 H2O. This is the second of three successive reactions resulting in the oxidation of ent-kaurenoate (ent-kaurenoic acid) to gibberellin 12 (GA12).","definition_xrefs":["MetaCyc:RXN1F-160","EC:1.14.13.79"],"gene_count":0,"genotype_count":0,"name":"obsolete ent-7-alpha-hydroxykaurenoate oxidase activity (obsolete GO:0051778)","termid":"GO:0051778"}


id: GO:0034358
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A spherical particle with a hydrophobic core of triglycerides and/or cholesterol esters, surrounded by an amphipathic monolayer of phospholipids, cholesterol and apolipoproteins. Plasma lipoprotein particles transport lipids, which are non-covalently associated with the particles, in the blood or lymph.","definition_xrefs":["GOC:rl","GOC:BHF","GOC:expert_pt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipoprotein particle","termid":"GO:1990777"},{"relation_name":"part_of","term_name":"extracellular space","termid":"GO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005576","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"plasma lipoprotein particle","termid":"GO:0034358"}


id: PBO:0058097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4313","termid":"PBO:0058097"}


id: PBO:0074062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 39","termid":"PBO:0074062"}


id: GO:0004914
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with interleukin-5 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:jl","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"interleukin-5 receptor activity","synonyms":[{"name":"IL-5 receptor activity","type":"exact"},{"name":"IL-5R","type":"exact"}],"termid":"GO:0004914"}


id: PBO:0039554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD49 pseudogene 1","termid":"PBO:0039554"}


id: GO:0071577
data:
  {"annotated_genes":["SJAG_02968","SJAG_01078","SJAG_00328","SJAG_01803","SJAG_03528","SJAG_00222","SJAG_01990","SJAG_04185"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97312,100431],"is_not":false,"summary":null,"term":"GO:0071577"},{"annotations":[110498],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140147"},{"annotations":[109369,100290],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071578"},{"annotations":[89811,89810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140209"},{"annotations":[86478,100429],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904257"},{"annotations":[100430,86479],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062111"}]},"cv_name":"biological_process","definition":"A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zinc ion transport","termid":"GO:0006829"},{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transport","termid":"GO:0098655"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00222":null,"SJAG_00328":null,"SJAG_01078":null,"SJAG_01803":null,"SJAG_01990":null,"SJAG_02968":null,"SJAG_03528":null,"SJAG_04185":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"zinc ion transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"zinc II ion transmembrane transport","type":"exact"},{"name":"zinc ion membrane transport","type":"exact"},{"name":"zinc transmembrane transport","type":"exact"}],"termid":"GO:0071577","terms_by_termid":{"GO:0062111":null,"GO:0071577":null,"GO:0071578":null,"GO:0140147":null,"GO:0140209":null,"GO:1904257":null}}


id: SO:0000590
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding.","direct_ancestors":[{"relation_name":"derives_from","term_name":"SRP_RNA_primary_transcript","termid":"SO:0000589"},{"relation_name":"is_a","term_name":"ncRNA","termid":"SO:0000655"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRP_RNA","synonyms":[{"name":"7S RNA","type":"related"},{"name":"INSDC_feature:ncRNA","type":"broad"},{"name":"INSDC_qualifier:SRP_RNA","type":"exact"},{"name":"SRP RNA","type":"exact"},{"name":"signal recognition particle RNA","type":"related"}],"termid":"SO:0000590"}


id: PBO:0028544
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_transcription_regulatory_region_sequence-specific_DNA_binding_during_cellular_response_to_phosphate_starvation","termid":"PBO:0028544"}


id: PBO:0050062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLCS intronic transcript 1","termid":"PBO:0050062"}


id: PR:000049982
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA repair protein rad9 (Schizosaccharomyces pombe) that has been phosphorylated on residues equivalent to Thr-412 and Ser-423 of the amino acid sequence represented by UniProtKB:P26306. Example: UniProtKB:P26306, Thr-412/Ser-423, MOD:00046.","definition_xrefs":["PRO:CNA","PMID:21561865","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA repair protein rad9 (Schizosaccharomyces pombe)","termid":"PR:000044575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rad9/Phos(T412,S423)","pombase_gene_id":"SPAC664.07c","synonyms":[{"name":"PomBase_original_PRO_term_name: DNA repair protein rad9 phosphorylated 3 (Schizosaccharomyces pombe)","type":"exact"},{"name":"rad9/Phos(T412,S423)","type":"exact"}],"termid":"PR:000049982"}


id: PBO:0047977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FSHD region gene 1 family member D, pseudogene","termid":"PBO:0047977"}


id: PBO:0002306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-CHY","termid":"PBO:0002306"}


id: GO:1905367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intralumenal vesicle formation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:PARL","PMID:26911690","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"positive regulation of endosome organization","termid":"GO:1904980"},{"relation_name":"is_a","term_name":"regulation of intralumenal vesicle formation","termid":"GO:1905365"},{"relation_name":"positively_regulates","term_name":"intralumenal vesicle formation","termid":"GO:0070676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0006810"],"is_obsolete":false,"name":"positive regulation of intralumenal vesicle formation","synonyms":[{"name":"activation of endosome membrane budding","type":"narrow"},{"name":"activation of intralumenal vesicle formation","type":"narrow"},{"name":"positive regulation of endosome membrane budding","type":"exact"},{"name":"up regulation of endosome membrane budding","type":"exact"},{"name":"up regulation of intralumenal vesicle formation","type":"exact"},{"name":"up-regulation of endosome membrane budding","type":"exact"},{"name":"up-regulation of intralumenal vesicle formation","type":"exact"},{"name":"upregulation of endosome membrane budding","type":"exact"},{"name":"upregulation of intralumenal vesicle formation","type":"exact"}],"termid":"GO:1905367"}


id: GO:0009237
data:
  {"annotated_genes":["SJAG_00792","SJAG_00469","SJAG_04031","SJAG_04032"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90146,90154],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031169"},{"annotations":[90101],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905569"},{"annotations":[101512],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019290"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00469":null,"SJAG_00792":null,"SJAG_04031":null,"SJAG_04032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"siderophore metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"siderochrome metabolic process","type":"narrow"},{"name":"siderochrome metabolism","type":"narrow"},{"name":"siderophore metabolism","type":"exact"}],"termid":"GO:0009237","terms_by_termid":{"GO:0019290":null,"GO:0031169":null,"GO:1905569":null}}


id: GO:0045942
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of phosphorus utilization.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphorus utilization","termid":"GO:0006795"},{"relation_name":"is_a","term_name":"negative regulation of phosphorus metabolic process","termid":"GO:0010563"},{"relation_name":"negatively_regulates","term_name":"phosphorus utilization","termid":"GO:0006794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of phosphorus utilization","synonyms":[{"name":"down regulation of phosphorus utilization","type":"exact"},{"name":"down-regulation of phosphorus utilization","type":"exact"},{"name":"downregulation of phosphorus utilization","type":"exact"},{"name":"inhibition of phosphorus utilization","type":"narrow"}],"termid":"GO:0045942"}


id: FYPO:0006438
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which DNA molecules corresponding to alkylation damage repair intermediates are absent from the cell during DNA replication.","definition_xrefs":["PomBase:mah","PMID:23071723"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"alkylation damage repair intermediates absent","synonyms":[{"name":"alkylation damage repair intermediates absent during mitotic cell cycle","type":"related"},{"name":"alkylation damage repair intermediates absent during vegetative growth","type":"exact"}],"termid":"FYPO:0006438"}


id: PBO:0059194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X1","termid":"PBO:0059194"}


id: PBO:0035740
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_ubiquitinated_protein_in_cell_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0035740"}


id: PBO:0075764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/arginine repetitive matrix 3","termid":"PBO:0075764"}


id: PBO:0056194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member A5, pseudogene","termid":"PBO:0056194"}


id: PBO:0053375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 301","termid":"PBO:0053375"}


id: GO:0035050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure. The heart tube forms as the heart rudiment from the heart field.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"is_a","term_name":"epithelium development","termid":"GO:0060429"},{"relation_name":"part_of","term_name":"heart development","termid":"GO:0007507"},{"relation_name":"part_of","term_name":"embryonic organ development","termid":"GO:0048568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic heart tube development","termid":"GO:0035050"}


id: PBO:0048888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family like 7","termid":"PBO:0048888"}


id: PR:Q92346
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC6G9.01c gene.","definition_xrefs":["UniProtKB:Q92346","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C6G9.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6G9.01c","synonyms":[{"name":"Spom972h-SPAC6G9.01c","type":"exact"}],"termid":"PR:Q92346"}


id: GO:0003781
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete actin bundling activity (obsolete GO:0003781)","synonyms":[{"name":"actin bundling activity","type":"exact"}],"termid":"GO:0003781"}


id: PBO:0038862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with dual PH domains 2","termid":"PBO:0038862"}


id: GO:0019129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The racemization of peptidyl-leucine.","definition_xrefs":["RESID:AA0197"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-leucine racemization (obsolete GO:0019129)","termid":"GO:0019129"}


id: PBO:0072035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 5","termid":"PBO:0072035"}


id: PBO:0052374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 19","termid":"PBO:0052374"}


id: PBO:0056172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"macrophage erythroblast attacher, E3 ubiquitin ligase","termid":"PBO:0056172"}


id: PBO:0005149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-3 phosphoglycerate dehydrogenase (predicted)","termid":"PBO:0005149"}


id: GO:0106434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reactions involved in isomerization of all trans to all cis retnal.","definition_xrefs":["PMID:21447403"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal metabolic process","termid":"GO:0042574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"retinal isomerization","termid":"GO:0106434"}


id: PBO:0059307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L50 pseudogene 3","termid":"PBO:0059307"}


id: GO:0002521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized hemopoietic precursor cell acquires the specialized features of a leukocyte. A leukocyte is an achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.","definition_xrefs":["GOC:add","PMID:16551264","CL:0000738"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"hemopoiesis","termid":"GO:0030097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte differentiation","synonyms":[{"name":"immune cell differentiation","type":"exact"},{"name":"leucocyte differentiation","type":"exact"}],"termid":"GO:0002521"}


id: FYPO:0003461
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose measured in a cell is normal (i.e. indistinguishable from wild type) when the cell is subject to salt stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular trehalose level","termid":"FYPO:0001449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal cellular trehalose level during cellular response to salt stress","synonyms":[{"name":"normal cellular trehalose accumulation during cellular response to salt stress","type":"related"},{"name":"normal cellular trehalose level during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"normal cellular trehalose level during cellular response to salt stress during vegetative growth","type":"exact"}],"termid":"FYPO:0003461"}


id: PBO:0068442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 16, pseudogene","termid":"PBO:0068442"}


id: PBO:0074470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMS pseudogene 1","termid":"PBO:0074470"}


id: GO:0070621
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the epidermal growth factor receptor (EGFR), Grb2, the adaptor protein SHC and the guanine nucleotide exchange factor Sos (or an ortholog thereof, such as mSos1), and is involved in linking EGFR activation to the p21-Ras pathway.","definition_xrefs":["PMID:8940013","PMID:7798267","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"EGFR-Shc-Grb2-Sos complex","termid":"GO:0070621"}


id: GO:0006368
data:
  {"annotated_genes":["SJAG_03128","SJAG_03118","SJAG_00914","SJAG_03481","SJAG_00540","SJAG_01149","SJAG_04257","SJAG_04933","SJAG_00293","SJAG_00119","SJAG_01713","SJAG_02416","SJAG_02873","SJAG_03211","SJAG_01610","SJAG_04353","SJAG_02238","SJAG_03944","SJAG_02551","SJAG_03967","SJAG_00913","SJAG_00483","SJAG_01707","SJAG_03006","SJAG_03061","SJAG_00139","SJAG_04038","SJAG_00320","SJAG_04670","SJAG_00150","SJAG_02314","SJAG_02698","SJAG_02319","SJAG_02691","SJAG_02097","SJAG_02393","SJAG_01151","SJAG_02209","SJAG_00925"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87997,88666,89988,91260,95229,96010,101623,102280,102941,103827,104017,107626,109341,110229,110553],"is_not":false,"summary":null,"term":"GO:0006368"},{"annotations":[97860],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0001193"},{"annotations":[114112],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0034244"},{"annotations":[111458,99164,105167,91860,113173,101484,102156],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0032968"},{"annotations":[88403,104906,115018,91532,87263,112382,110699,86097,89424,113080,90653,99675,107416,104911,109763],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140673"}]},"cv_name":"biological_process","definition":"The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.","definition_xrefs":["GOC:txnOH","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription elongation","termid":"GO:0006354"},{"relation_name":"part_of","term_name":"transcription by RNA polymerase II","termid":"GO:0006366"}],"gene_count":39,"genes_by_uniquename":{"SJAG_00119":null,"SJAG_00139":null,"SJAG_00150":null,"SJAG_00293":null,"SJAG_00320":null,"SJAG_00483":null,"SJAG_00540":null,"SJAG_00913":null,"SJAG_00914":null,"SJAG_00925":null,"SJAG_01149":null,"SJAG_01151":null,"SJAG_01610":null,"SJAG_01707":null,"SJAG_01713":null,"SJAG_02097":null,"SJAG_02209":null,"SJAG_02238":null,"SJAG_02314":null,"SJAG_02319":null,"SJAG_02393":null,"SJAG_02416":null,"SJAG_02551":null,"SJAG_02691":null,"SJAG_02698":null,"SJAG_02873":null,"SJAG_03006":null,"SJAG_03061":null,"SJAG_03118":null,"SJAG_03128":null,"SJAG_03211":null,"SJAG_03481":null,"SJAG_03944":null,"SJAG_03967":null,"SJAG_04038":null,"SJAG_04257":null,"SJAG_04353":null,"SJAG_04670":null,"SJAG_04933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"transcription elongation by RNA polymerase II","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"RNA elongation from Pol II promoter","type":"exact"},{"name":"RNA polymerase II transcription elongation factor activity","type":"related"},{"name":"transcription elongation by RNA polymerase II promoter","type":"exact"},{"name":"transcription elongation from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0006368","terms_by_termid":{"GO:0001193":null,"GO:0006368":null,"GO:0032968":null,"GO:0034244":null,"GO:0140673":null}}


id: GO:0060376
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of mast cell differentiation, the process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte differentiation","termid":"GO:0002763"},{"relation_name":"is_a","term_name":"regulation of mast cell differentiation","termid":"GO:0060375"},{"relation_name":"positively_regulates","term_name":"mast cell differentiation","termid":"GO:0060374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mast cell differentiation","termid":"GO:0060376"}


id: PBO:0017097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin family Schizosaccharomyces specific protein Mug170","termid":"PBO:0017097"}


id: PBO:0068434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 4","termid":"PBO:0068434"}


id: PBO:0032703
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_level_of_histone_H3_in_cell","termid":"PBO:0032703"}


id: GO:0050651
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dermatan sulfate proteoglycan, any glycoprotein whose glycosaminoglycan units are dermatan sulfate (chondroitin sulfate B). Dermatan sulfate is a glycosaminoglycan with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteoglycan biosynthetic process","termid":"GO:0030166"},{"relation_name":"is_a","term_name":"dermatan sulfate proteoglycan metabolic process","termid":"GO:0050655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dermatan sulfate proteoglycan biosynthetic process","synonyms":[{"name":"chondroitin sulfate B proteoglycan biosynthesis","type":"exact"},{"name":"chondroitin sulfate B proteoglycan biosynthetic process","type":"exact"},{"name":"dermatan sulfate proteoglycan anabolism","type":"exact"},{"name":"dermatan sulfate proteoglycan biosynthesis","type":"exact"},{"name":"dermatan sulfate proteoglycan formation","type":"exact"},{"name":"dermatan sulfate proteoglycan synthesis","type":"exact"},{"name":"dermatan sulphate proteoglycan biosynthesis","type":"exact"},{"name":"dermatan sulphate proteoglycan biosynthetic process","type":"exact"}],"termid":"GO:0050651"}


id: GO:0061556
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of a trigeminal ganglion is generated and organized.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial ganglion morphogenesis","termid":"GO:0061559"},{"relation_name":"part_of","term_name":"trigeminal nerve morphogenesis","termid":"GO:0021636"},{"relation_name":"part_of","term_name":"trigeminal ganglion development","termid":"GO:0061551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trigeminal ganglion morphogenesis","synonyms":[{"name":"trigeminal ganglia morphogenesis","type":"related"}],"termid":"GO:0061556"}


id: GO:0106319
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (4R)-limonene + NADH + H+ + O2 = NAD+ + H2O + (4R)-limonene-1,2-epoxide.","definition_xrefs":["RHEA:26093"],"gene_count":0,"genotype_count":0,"name":"obsolete (R)-limonene 1,2-monooxygenase NADH activity (obsolete GO:0106319)","termid":"GO:0106319"}


id: GO:0004191
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the selected cleavage of the Leu6-Lys7 bond in the pheromone alpha-mating factor.","definition_xrefs":["EC:3.4.23.35"],"gene_count":0,"genotype_count":0,"name":"obsolete barrierpepsin activity (obsolete GO:0004191)","synonyms":[{"name":"Bar proteinase activity","type":"narrow"},{"name":"barrier proteinase activity","type":"related"},{"name":"barrierpepsin activity","type":"exact"},{"name":"extracellular 'barrier' protein activity","type":"related"}],"termid":"GO:0004191"}


id: PBO:0035758
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H3-K4_trimethylation_during_vegetative_growth","termid":"PBO:0035758"}


id: GO:0102907
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) = diphosphoric acid + sesquisabinene.","definition_xrefs":["GOC:pz","EC:4.2.3.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"sesquisabinene synthase activity","secondary_identifiers":["MetaCyc:RXN-8622"],"termid":"GO:0102907"}


id: GO:0070231
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a T cell, a type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex.","definition_xrefs":["ISBN:0781765196","GOC:add","CL:0000084","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte apoptotic process","termid":"GO:0070227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell apoptotic process","synonyms":[{"name":"T cell apoptosis","type":"narrow"},{"name":"T lymphocyte apoptosis","type":"exact"},{"name":"T-cell apoptosis","type":"exact"},{"name":"T-lymphocyte apoptosis","type":"exact"},{"name":"programmed cell death of T cells by apoptosis","type":"exact"}],"termid":"GO:0070231"}


id: GO:0090211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of the establishment of the blood-brain barrier, a selectively permeable structural and functional barrier that exists between the capillaries and the brain.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell development","termid":"GO:0010720"},{"relation_name":"is_a","term_name":"regulation of establishment of blood-brain barrier","termid":"GO:0090210"},{"relation_name":"positively_regulates","term_name":"establishment of blood-brain barrier","termid":"GO:0060856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of establishment of blood-brain barrier","synonyms":[{"name":"positive regulation of establishment of BBB","type":"exact"}],"termid":"GO:0090211"}


id: PBO:0111447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex cyclin-dependent protein kinase subunit Srb10","termid":"PBO:0111447"}


id: SO:0001400
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A post translationally modified lysine amino acid feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_amino_acid_feature","termid":"SO:0001385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_L_lysine","secondary_identifiers":["MOD:00912"],"synonyms":[{"name":"ModLys","type":"exact"},{"name":"modified L lysine","type":"exact"},{"name":"modified L-lysine","type":"exact"}],"termid":"SO:0001400"}


id: PBO:0047393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 33","termid":"PBO:0047393"}


id: GO:0044611
data:
  {"annotated_genes":["SJAG_03182","SJAG_02757","SJAG_00375"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96493,97235,112634],"is_not":false,"summary":null,"term":"GO:0044611"}]},"cv_name":"cellular_component","definition":"A subcomplex of the nuclear pore complex (NPC) that forms the inner rings of the core scaffold, a lattice-like structure that gives the NPC its shape and strength. In S. cerevisiae, the two inner rings are each composed of Nup192p, Nup188p, Nup170p and Nup157p. In vertebrates, the two inner rings are each composed of Nup205, Nup188 and Nup155. Components are arranged in 8-fold symmetrical 'spokes' around the central transport channel. A single 'spoke', can be isolated and is sometimes referred to as the Nup170 complex.","definition_xrefs":["PMID:18046406","PMID:19524430","PMID:20947011","GOC:dgf","PMID:22419078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nuclear pore","termid":"GO:0005643"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00375":null,"SJAG_02757":null,"SJAG_03182":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005643"}],"interesting_parent_ids":["GO:0005643","GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"nuclear pore inner ring","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Nup170 complex","type":"exact"}],"termid":"GO:0044611","terms_by_termid":{"GO:0044611":null}}


id: GO:1900753
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a doxorubicin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["PMID:15090538","PMID:19063901","PMID:19651502","GOC:TermGenie","PMID:12057006","PMID:9651400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"},{"relation_name":"is_a","term_name":"glycoside transport","termid":"GO:1901656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"doxorubicin transport","synonyms":[{"name":"(1S,3S)-3,5,12-trihydroxy-3-(hydroxyacetyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranoside transport","type":"exact"},{"name":"(1S,3S)-3-glycoloyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranoside transport","type":"related"},{"name":"(8S-cis)-10-((3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranosyl)oxy)-7,8,9,10-tetrahydro-6,8,11-trihydroxy-8-(hydroxyacetyl)-1-methoxy-5,12-naphthacenedione transport","type":"related"},{"name":"14-hydroxydaunomycin transport","type":"related"},{"name":"14-hydroxydaunorubicine transport","type":"related"},{"name":"Adriamycin transport","type":"related"},{"name":"doxorubicine transport","type":"related"},{"name":"doxorubicinum transport","type":"related"}],"termid":"GO:1900753"}


id: GO:0071323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chitin","termid":"GO:0010200"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to chitin","termid":"GO:0071323"}


id: GO:0032238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of adenosine, adenine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside transport","termid":"GO:0015858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"adenosine transport","termid":"GO:0032238"}


id: PBO:0042303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD14 molecule","termid":"PBO:0042303"}


id: GO:0009789
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of abscisic acid (ABA) signaling.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of abscisic acid-activated signaling pathway","termid":"GO:0009787"},{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"positively_regulates","term_name":"abscisic acid-activated signaling pathway","termid":"GO:0009738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of abscisic acid-activated signaling pathway","synonyms":[{"name":"activation of abscisic acid mediated signaling","type":"narrow"},{"name":"positive regulation of abscisic acid mediated signaling pathway","type":"related"},{"name":"positive regulation of abscisic acid mediated signalling","type":"exact"},{"name":"stimulation of abscisic acid mediated signaling","type":"narrow"},{"name":"up regulation of abscisic acid mediated signaling","type":"exact"},{"name":"up-regulation of abscisic acid mediated signaling","type":"exact"},{"name":"upregulation of abscisic acid mediated signaling","type":"exact"}],"termid":"GO:0009789"}


id: GO:0034370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acquisition, loss or modification of a protein or lipid within a triglyceride-rich lipoprotein particle, including the hydrolysis of triglyceride by lipoprotein lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride from a triglyceride-rich lipoprotein particle.","definition_xrefs":["GOC:expert_pt","GOC:rl","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma lipoprotein particle remodeling","termid":"GO:0034369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"triglyceride-rich lipoprotein particle remodeling","synonyms":[{"name":"triacylglycerol-rich lipoprotein particle remodeling","type":"exact"},{"name":"triacylglycerol-rich lipoprotein particle remodelling","type":"exact"},{"name":"triglyceride-rich lipoprotein particle remodelling","type":"exact"}],"termid":"GO:0034370"}


id: PBO:0000470
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.14.13.70","termid":"PBO:0000470"}


id: PBO:0057514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 632","termid":"PBO:0057514"}


id: GO:0032612
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interleukin-1 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"interleukin-1 production","secondary_identifiers":["GO:0050701","GO:0042222"],"synonyms":[{"name":"IL-1 production","type":"exact"},{"name":"interleukin-1 biosynthetic process","type":"narrow"},{"name":"interleukin-1 secretion","type":"narrow"}],"termid":"GO:0032612"}


id: GO:0003343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the septum transversum from its initial formation to the mature structure. The septum transversum is a portion of the trunk mesenchyme.","definition_xrefs":["PMID:18722343","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchyme development","termid":"GO:0060485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"septum transversum development","termid":"GO:0003343"}


id: GO:0071410
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cyclopentenone","termid":"GO:0010583"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cyclopentenone","termid":"GO:0071410"}


id: PBO:0087919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor targeting filamentation genes and Ty1 expression; Ste12p activation of most filamentation gene promoters depends on Tec1p and Tec1p transcriptional activity is dependent on its association with Ste12p; binds to TCS elements upstream of filamentation genes, which are regulated by Tec1p/Ste12p/Dig1p complex; competes with Dig2p for binding to Ste12p/Dig1p; positive regulator of chronological life span; TEA/ATTS DNA-binding domain family member","termid":"PBO:0087919"}


id: PBO:0051060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 3-22","termid":"PBO:0051060"}


id: PBO:0069788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1074, pseudogene","termid":"PBO:0069788"}


id: SO:0001492
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory region that is part of an intron.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptional_cis_regulatory_region","termid":"SO:0001055"},{"relation_name":"part_of","term_name":"intron","termid":"SO:0000188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intronic_regulatory_region","synonyms":[{"name":"intronic regulatory region","type":"exact"}],"termid":"SO:0001492"}


id: GO:2000714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of maintenance of meiotic sister chromatid cohesion along the chromosome arms.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of maintenance of meiotic sister chromatid cohesion, arms (obsolete GO:2000714)","synonyms":[{"name":"positive regulation of maintenance of meiotic sister chromatin cohesion along arms","type":"exact"},{"name":"positive regulation of maintenance of sister chromatin cohesion along arms at meiosis I","type":"exact"}],"termid":"GO:2000714"}


id: PBO:0042881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 221","termid":"PBO:0042881"}


id: PATO:0000077
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"response to","synonyms":[{"name":"responsivity","type":"related"}],"termid":"PATO:0000077"}


id: PBO:0062525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily T member 1 pseudogene","termid":"PBO:0062525"}


id: GO:0021708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature Lugaro cell. Differentiation includes the processes involved in commitment of a neuroblast to a Lugaro cell fate. A Lugaro cell is an inhibitory GABAergic interneuron found in the cerebellar cortex.","definition_xrefs":["GOC:dph","GOC:dgh","GOC:jid","GO_REF:0000021","PMID:15157725","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation in hindbrain","termid":"GO:0021533"},{"relation_name":"is_a","term_name":"central nervous system neuron differentiation","termid":"GO:0021953"},{"relation_name":"is_a","term_name":"GABAergic neuron differentiation","termid":"GO:0097154"},{"relation_name":"part_of","term_name":"cerebellar cortex formation","termid":"GO:0021697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Lugaro cell differentiation","termid":"GO:0021708"}


id: PBO:0081481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 358","termid":"PBO:0081481"}


id: PBO:0060315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin light chain kinase family member 4","termid":"PBO:0060315"}


id: PBO:0051140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-16 (non-functional)","termid":"PBO:0051140"}


id: GO:0080177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the plastoglobule. Plastoglobule is a lipoprotein particle present in chloroplasts. They are rich in non-polar lipids (triglycerides, esters) as well as in prenylquinones, plastoquinone and tocopherols. Plastoglobules are often associated with thylakoid membranes, suggesting an exchange of lipids with thylakoids.","definition_xrefs":["PMID:20813909"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"},{"relation_name":"part_of","term_name":"chloroplast organization","termid":"GO:0009658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plastoglobule organization","synonyms":[{"name":"plastoglobule organisation","type":"exact"}],"termid":"GO:0080177"}


id: GO:0030884
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an exogenous lipid antigen (examples include microbial lipids and glycolipids).","definition_xrefs":["PMID:14500461"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid antigen binding","termid":"GO:0030882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008289","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"exogenous lipid antigen binding","termid":"GO:0030884"}


id: PBO:0054319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1711","termid":"PBO:0054319"}


id: PBO:0091214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pdc2-Repressed lncRNA, SPAC212.12 antisense","termid":"PBO:0091214"}


id: PBO:0059201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X8, pseudogene","termid":"PBO:0059201"}


id: GO:0080071
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indol-3-yl-methyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = indol-3-yl-methyl-glucosinolate + adenosine 3',5'-bisphosphate.","definition_xrefs":["PMID:19077143"],"direct_ancestors":[{"relation_name":"is_a","term_name":"desulfoglucosinolate sulfotransferase activity","termid":"GO:0047364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016782"],"is_obsolete":false,"name":"indol-3-yl-methyl-desulfoglucosinolate sulfotransferase activity","secondary_identifiers":["MetaCyc:RXN-1443"],"termid":"GO:0080071"}


id: PR:Q9HDU7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBPB2B2.08 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HDU7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0643 protein PB2B2.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB2B2.08","synonyms":[{"name":"Spom972h-SPBPB2B2.08","type":"exact"}],"termid":"PR:Q9HDU7"}


id: GO:0061727
data:
  {"annotated_genes":["SJAG_01596","SJAG_02106","SJAG_02988","SJAG_04726","SJAG_04674","SJAG_04404","SJAG_02960"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58890,60505,101158],"is_not":false,"summary":null,"term":"GO:0061727"},{"annotations":[84008,98897,88467,108961,96406],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019243"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into lactate.","definition_xrefs":["GOC:dph","PMID:2198020"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactate metabolic process","termid":"GO:0006089"},{"relation_name":"is_a","term_name":"methylglyoxal catabolic process","termid":"GO:0051596"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01596":null,"SJAG_02106":null,"SJAG_02960":null,"SJAG_02988":null,"SJAG_04404":null,"SJAG_04674":null,"SJAG_04726":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"methylglyoxal catabolic process to lactate","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:0061727","terms_by_termid":{"GO:0019243":null,"GO:0061727":null}}


id: PBO:0052943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 27-1","termid":"PBO:0052943"}


id: SO:0000032
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"DNA molecules that have been selected from random pools based on their ability to bind other molecules.","direct_ancestors":[{"relation_name":"is_a","term_name":"aptamer","termid":"SO:0000031"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA_aptamer","synonyms":[{"name":"DNA aptamer","type":"exact"}],"termid":"SO:0000032"}


id: PBO:0108613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acidic nuclear phosphoprotein 32 family member C, pseudogene","termid":"PBO:0108613"}


id: PR:O59702
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- clr6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59702"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase clr6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36.05c","synonyms":[{"name":"Spom972h-clr6","type":"exact"},{"name":"cryptic loci regulator 6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59702"}


id: GO:0018231
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-cysteine to form peptidyl-S-diacylglycerol-L-cysteine; the oleate and palmitate actually represent mixtures of saturated (generally at 3') and unsaturated (generally at 2') fatty acids.","definition_xrefs":["RESID:AA0107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine","synonyms":[{"name":"peptidyl-S-diacylglycerol-L-cysteine anabolism from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-S-diacylglycerol-L-cysteine formation from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-S-diacylglycerol-L-cysteine synthesis from peptidyl-cysteine","type":"exact"}],"termid":"GO:0018231"}


id: PBO:0049575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B.W histone 3, pseudogene","termid":"PBO:0049575"}


id: GO:0061922
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: propionyl-CoA + histone = CoA + propionyl-histone.","definition_xrefs":["PMID:17267393"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein propionyltransferase activity","termid":"GO:0061920"},{"relation_name":"is_a","term_name":"histone modifying activity","termid":"GO:0140993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0140096","GO:0016746","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"histone propionyltransferase activity","termid":"GO:0061922"}


id: PBO:0007590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUR7 family protein Pun1 (predicted)","termid":"PBO:0007590"}


id: PBO:0084616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Metalloprotease subunit of 19S regulatory particle; part of 26S proteasome lid; couples the deubiquitination and degradation of proteasome substrates; involved, independent of catalytic activity, in fission of mitochondria and peroxisomes; protein abundance increases in response to DNA replication stress","termid":"PBO:0084616"}


id: GO:0030182
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a neuron.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"generation of neurons","termid":"GO:0048699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron differentiation","termid":"GO:0030182"}


id: GO:0000194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Downregulation of MAP kinase activity in the context of regulating pseudohyphal or invasive growth.","definition_xrefs":["PMID:9561267"],"gene_count":0,"genotype_count":0,"name":"obsolete inactivation of MAPK (pseudohyphal growth) (obsolete GO:0000194)","synonyms":[{"name":"inactivation of MAPK (pseudohyphal growth)","type":"exact"}],"termid":"GO:0000194"}


id: PBO:0067973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 275","termid":"PBO:0067973"}


id: PBO:0074840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 33","termid":"PBO:0074840"}


id: PBO:0027117
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_premeiotic_DNA_replication_during_azygotic_meiosis","termid":"PBO:0027117"}


id: PBO:0031111
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_reactive_oxygen_species_during_G0_phase","termid":"PBO:0031111"}


id: PBO:0079302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 1","termid":"PBO:0079302"}


id: PBO:0071488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 29","termid":"PBO:0071488"}


id: GO:0090680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dissemination of mature viral particles from a host cell via the destabilization of the cell outer membrane.","definition_xrefs":["PMID:17900620"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral release from host cell by cytolysis","termid":"GO:0044659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral release via disruption of host outer membrane","synonyms":[{"name":"disruption by virus of host outer membrane","type":"related"}],"termid":"GO:0090680"}


id: PBO:0059939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 25","termid":"PBO:0059939"}


id: PBO:0004611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FACT complex component Spt16","termid":"PBO:0004611"}


id: PBO:0084499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis-specific protein required for chromosome synapsis; displays Red1p dependent localization to the unsynapsed axial-lateral elements of the synaptonemal complex; required for chiasma formation; in vitro, displays the ability to promote intra- and intermolecular synapsis between double-stranded DNA molecules and to fold DNA into rigid protein-DNA filaments","termid":"PBO:0084499"}


id: GO:0047280
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: diphosphate + nicotinamide mononucleotide = 5-phospho-alpha-D-ribose 1-diphosphate + H+ + nicotinamide.","definition_xrefs":["RHEA:16149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"nicotinamide phosphoribosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-197250","MetaCyc:2.4.2.12-RXN","EC:2.4.2.12","KEGG_REACTION:R01271"],"synonyms":[{"name":"NMN diphosphorylase activity","type":"related"},{"name":"NMN pyrophosphorylase activity","type":"related"},{"name":"NMN synthetase activity","type":"related"},{"name":"nicotinamide mononucleotide pyrophosphorylase activity","type":"related"},{"name":"nicotinamide mononucleotide synthetase activity","type":"related"},{"name":"nicotinamide-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase activity","type":"related"}],"termid":"GO:0047280"}


id: PBO:0018051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine carboxyl methyltransferase, involved in regulation of autophagy Ppm1 (predicted)","termid":"PBO:0018051"}


id: PBO:0029134
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-spindle_pole_body_absent_from_cell","termid":"PBO:0029134"}


id: PBO:0114530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TREX2 complex subunit-like, poorly characterized, implicated in transcription or RNA surveillance","termid":"PBO:0114530"}


id: PBO:0053054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LINC00240 antisense RNA regulating promoter methylation","termid":"PBO:0053054"}


id: PBO:0067756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 55","termid":"PBO:0067756"}


id: SO:0001331
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"2prime_O_ribosylguanosine_phosphate is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two_prime_O_ribosylguanosine_phosphate","secondary_identifiers":["RNAMOD:036"],"synonyms":[{"name":"2'-O-ribosylguanosine (phosphate)","type":"exact"},{"name":"Gr(p)","type":"exact"},{"name":"two prime O ribosylguanosine phosphate","type":"exact"}],"termid":"SO:0001331"}


id: PBO:0040951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 22","termid":"PBO:0040951"}


id: GO:0034177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of toll-like receptor 12 signaling pathway.","definition_xrefs":["GOC:add","PMID:17328678","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 12 signaling pathway","termid":"GO:0034175"},{"relation_name":"is_a","term_name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"positively_regulates","term_name":"toll-like receptor 12 signaling pathway","termid":"GO:0034174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of toll-like receptor 12 signaling pathway","synonyms":[{"name":"positive regulation of TLR12 signaling pathway","type":"exact"},{"name":"positive regulation of toll-like receptor 12 signalling pathway","type":"exact"}],"termid":"GO:0034177"}


id: GO:0030635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving derivatives of acetic acid.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete acetate derivative metabolic process (obsolete GO:0030635)","synonyms":[{"name":"acetate derivative metabolic process","type":"exact"},{"name":"acetate derivative metabolism","type":"exact"}],"termid":"GO:0030635"}


id: GO:0140972
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of AIM2 inflammasome complex assembly.","definition_xrefs":["PMID:33467177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"regulation of AIM2 inflammasome complex assembly","termid":"GO:0140971"},{"relation_name":"negatively_regulates","term_name":"AIM2 inflammasome complex assembly","termid":"GO:0140970"},{"relation_name":"part_of","term_name":"negative regulation of inflammasome-mediated signaling pathway","termid":"GO:0141086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"negative regulation of AIM2 inflammasome complex assembly","termid":"GO:0140972"}


id: PBO:0040881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bone morphogenetic protein 6","termid":"PBO:0040881"}


id: FYPO:0001474
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the mitotic spindle pole body is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"abnormal spindle pole body morphology","termid":"FYPO:0004607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal mitotic spindle pole body morphology","synonyms":[{"name":"abnormal mitotic SPB morphology","type":"exact"},{"name":"abnormal mitotic spindle pole body structure","type":"narrow"},{"name":"abnormal spindle pole body morphology during mitotic cell cycle","type":"related"},{"name":"abnormal spindle pole body morphology during vegetative growth","type":"exact"}],"termid":"FYPO:0001474"}


id: PATO:0000443
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis.","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000443 narcolepsy (obsolete PATO:0000443)","termid":"PATO:0000443"}


id: FYPO:0001592
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of arginine into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased amino acid import during vegetative growth","termid":"FYPO:0001360"},{"relation_name":"is_a","term_name":"abnormal arginine import","termid":"FYPO:0001654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased arginine import","synonyms":[{"name":"decreased L-arginine import","type":"exact"},{"name":"decreased L-arginine import across plasma membrane","type":"exact"},{"name":"decreased arginine import during mitotic cell cycle","type":"related"},{"name":"decreased arginine import during vegetative growth","type":"exact"},{"name":"decreased arginine import into cell","type":"exact"},{"name":"decreased arginine uptake","type":"exact"},{"name":"reduced arginine import","type":"exact"}],"termid":"FYPO:0001592"}


id: PBO:0057015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 103b-2","termid":"PBO:0057015"}


id: PBO:0091807
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. japonicus rsv1","termid":"PBO:0091807"}


id: GO:0018178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The adenylylation of peptidyl-threonine to form peptidyl-O-(phospho-5'-adenosine)-L-threonine.","definition_xrefs":["RESID:AA0267"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-threonine adenylylation (obsolete GO:0018178)","synonyms":[{"name":"peptidyl-threonine adenylation","type":"exact"}],"termid":"GO:0018178"}


id: PBO:0055173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2597","termid":"PBO:0055173"}


id: PBO:0029281
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_mitotic_spindle_pole_body","termid":"PBO:0029281"}


id: GO:1903951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of AV node cell action potential.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:25281747","GOC:BHF","GOC:mtg_cardiac_conduct_nov11","GOC:nc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of action potential","termid":"GO:0045760"},{"relation_name":"is_a","term_name":"regulation of AV node cell action potential","termid":"GO:0098904"},{"relation_name":"positively_regulates","term_name":"AV node cell action potential","termid":"GO:0086016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of AV node cell action potential","synonyms":[{"name":"activation of AV node cardiac muscle cell action potential","type":"narrow"},{"name":"activation of AV node cell action potential","type":"narrow"},{"name":"activation of atrioventricular node cardiac muscle cell action potential","type":"narrow"},{"name":"positive regulation of AV node cardiac muscle cell action potential","type":"exact"},{"name":"positive regulation of atrioventricular node cardiac muscle cell action potential","type":"exact"},{"name":"up regulation of AV node cardiac muscle cell action potential","type":"exact"},{"name":"up regulation of AV node cell action potential","type":"exact"},{"name":"up regulation of atrioventricular node cardiac muscle cell action potential","type":"exact"},{"name":"up-regulation of AV node cardiac muscle cell action potential","type":"exact"},{"name":"up-regulation of AV node cell action potential","type":"exact"},{"name":"up-regulation of atrioventricular node cardiac muscle cell action potential","type":"exact"},{"name":"upregulation of AV node cardiac muscle cell action potential","type":"exact"},{"name":"upregulation of AV node cell action potential","type":"exact"},{"name":"upregulation of atrioventricular node cardiac muscle cell action potential","type":"exact"}],"termid":"GO:1903951"}


id: GO:0031246
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the cell outer membrane consisting of the gene products that that penetrate the periplasmic side of the cell outer membrane only, either directly or via some covalently attached hydrophobic anchor.","definition_xrefs":["GOC:dos","GOC:mtg_sensu","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of periplasmic side of cell outer membrane (obsolete GO:0031246)","synonyms":[{"name":"intrinsic to external side of cell outer membrane","type":"narrow"},{"name":"intrinsic to internal leaflet of cell outer membrane","type":"exact"},{"name":"intrinsic to internal side of cell outer membrane","type":"exact"},{"name":"intrinsic to internal side of outer membrane","type":"exact"}],"termid":"GO:0031246"}


id: FYPO:0002647
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of threonine residues in one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal during mitosis.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased protein threonine phosphorylation during mitosis (obsolete FYPO:0002647)","synonyms":[{"name":"decreased peptidyl-threonine phosphorylation during mitosis","type":"exact"},{"name":"decreased protein threonine phosphorylation during mitosis during vegetative growth","type":"exact"},{"name":"decreased protein threonine phosphorylation during mitotic M phase","type":"related"},{"name":"decreased protein threonine phosphorylation during mitotic M phase during mitotic cell cycle","type":"related"},{"name":"decreased threonine phosphorylation during mitosis","type":"exact"},{"name":"reduced protein threonine phosphorylation during mitosis","type":"exact"}],"termid":"FYPO:0002647"}


id: PBO:0076594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 15","termid":"PBO:0076594"}


id: PR:P87117
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A beclin-1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00571","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein atg6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20G8.10c","secondary_identifiers":["UniProtKB:P87117"],"synonyms":[{"name":"Spom972h-BECN1","type":"exact"},{"name":"autophagy-related protein 6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87117"}


id: PBO:0088863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM23 translocase complex subunit Mgr2","termid":"PBO:0088863"}


id: GO:0009247
data:
  {"annotated_genes":["SJAG_01227","SJAG_02913","SJAG_04975","SJAG_01860","SJAG_03506","SJAG_00295","SJAG_03672","SJAG_02804","SJAG_04878","SJAG_02488","SJAG_02168","SJAG_01416","SJAG_05311","SJAG_02776","SJAG_02903","SJAG_03115","SJAG_00068","SJAG_04913","SJAG_03066","SJAG_03292","SJAG_00831","SJAG_04337","SJAG_03801","SJAG_04119","SJAG_04165","SJAG_03878","SJAG_02523","SJAG_06383","SJAG_05219","SJAG_06425","SJAG_04881","SJAG_03953","SJAG_05327","SJAG_01570","SJAG_04924","SJAG_00846","SJAG_05278"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89111,111374,102835,85583,108507,94738,94175,87420,99148,96308,89567,99888,83476,94945,103675,84959,104713,106061,112304,88248,90555,87247,84687,92485,89022,99825,96374,110100,107747,110944,113411,97688],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006506"},{"annotations":[86767,108685,91786,87827,91299],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051999"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolipid metabolic process","termid":"GO:0006664"},{"relation_name":"is_a","term_name":"membrane lipid biosynthetic process","termid":"GO:0046467"},{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"}],"gene_count":37,"genes_by_uniquename":{"SJAG_00068":null,"SJAG_00295":null,"SJAG_00831":null,"SJAG_00846":null,"SJAG_01227":null,"SJAG_01416":null,"SJAG_01570":null,"SJAG_01860":null,"SJAG_02168":null,"SJAG_02488":null,"SJAG_02523":null,"SJAG_02776":null,"SJAG_02804":null,"SJAG_02903":null,"SJAG_02913":null,"SJAG_03066":null,"SJAG_03115":null,"SJAG_03292":null,"SJAG_03506":null,"SJAG_03672":null,"SJAG_03801":null,"SJAG_03878":null,"SJAG_03953":null,"SJAG_04119":null,"SJAG_04165":null,"SJAG_04337":null,"SJAG_04878":null,"SJAG_04881":null,"SJAG_04913":null,"SJAG_04924":null,"SJAG_04975":null,"SJAG_05219":null,"SJAG_05278":null,"SJAG_05311":null,"SJAG_05327":null,"SJAG_06383":null,"SJAG_06425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"glycolipid biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-401"],"synonyms":[{"name":"glycolipid anabolism","type":"exact"},{"name":"glycolipid biosynthesis","type":"exact"},{"name":"glycolipid formation","type":"exact"},{"name":"glycolipid synthesis","type":"exact"}],"termid":"GO:0009247","terms_by_termid":{"GO:0006506":null,"GO:0051999":null}}


id: FYPO:0001894
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A sporulation phenotype in which asci that contain more or fewer than four spores form following conjugation and subsequent sporulation.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sporulation","termid":"FYPO:0000121"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000121"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0005447","FYPO:0000121"],"is_obsolete":false,"name":"abnormal sporulation resulting in formation of ascus with more or fewer than four spores","synonyms":[{"name":"abnormal ascospore formation resulting in formation of asci with more or fewer than four spores","type":"exact"},{"name":"abnormal spore number","type":"exact"},{"name":"abnormal sporulation resulting in formation of asci with more or fewer than four spores","type":"exact"}],"termid":"FYPO:0001894"}


id: _global:spatially_disjoint_from
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"A is spatially_disjoint_from B if and only if they have no parts in common","direct_ancestors":[{"relation_name":"is_a","term_name":"mereotopologically_related_to","termid":"_global:mereotopologically_related_to"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spatially_disjoint_from","secondary_identifiers":["RO:0002163"],"termid":"_global:spatially_disjoint_from"}


id: MOD:01480
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue into an 5'-fluoro-L-tryptophan.","definition_xrefs":["PubMed:8172898","PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monofluorinated L-tryptophan","termid":"MOD:01226"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-fluoro-L-tryptophan","synonyms":[{"name":"5-fluorotryptophan","type":"exact"}],"termid":"MOD:01480"}


id: PBO:0072052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 22","termid":"PBO:0072052"}


id: PBO:0085009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Negative regulator of TORC1 in response to limiting leucine; suppresses TORC1 activity with binding partners Psr1p/Psr2p, acting in parallel with SEACIT; regulates cell cycle arrest in stationary phase; inhibits Ras-cAMP-PKA regulation of apoptosis during nutrient depletion; required with Psr1p for activation of the general stress response; role in rapamycin-induced mitophagy; localizes to the cell periphery; human tumor suppressor and Whi2-like protein KCTD11 functionally complements the null","termid":"PBO:0085009"}


id: PR:O74457
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An N-alpha-acetyltransferase 20 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR23091:SF5","PRO:DNx","OMA:SCHPO04414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-terminal acetyltransferase B complex catalytic subunit naa20 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.12","secondary_identifiers":["UniProtKB:O74457"],"synonyms":[{"name":"NatB Nalpha terminal acetyltransferase 3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"NatB complex subunit naa20 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NAA20","type":"exact"}],"termid":"PR:O74457"}


id: FYPO:0005352
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the physical attachment of sister chromatids to mitotic spindle microtubules is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"},{"relation_name":"is_a","term_name":"normal mitotic cell cycle process","termid":"FYPO:0002741"},{"relation_name":"is_a","term_name":"normal attachment of spindle microtubules to kinetochore","termid":"FYPO:0003570"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal attachment of mitotic spindle microtubules to kinetochore","synonyms":[{"name":"abnormal attachment of spindle microtubules to kinetochore mitosis","type":"exact"},{"name":"normal attachment of mitotic spindle microtubules to kinetochore during vegetative growth","type":"exact"},{"name":"normal attachment of spindle microtubules to kinetochore during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005352"}


id: PR:O13948
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC23H4.05c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C23H4.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H4.05c","synonyms":[{"name":"Spom972h-SPAC23H4.05c","type":"exact"}],"termid":"PR:O13948"}


id: GO:1903071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of ER-associated ubiquitin-dependent protein catabolic process.","definition_xrefs":["PMID:17872946","GOC:TermGenie","GO_REF:0000058","GOC:rph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of ER-associated ubiquitin-dependent protein catabolic process (obsolete GO:1903071)","termid":"GO:1903071"}


id: PR:O42964
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- iws1 gene.","definition_xrefs":["UniProtKB:O42964","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor iws1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19G7.16","synonyms":[{"name":"Spom972h-iws1","type":"exact"}],"termid":"PR:O42964"}


id: PomGeneEx:0000014
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneExRNA","definition":"A gene expression qualifier that indicates that an RNA is present under a given set of conditions or at an indicated time.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"present","termid":"PomGeneEx:0000005"},{"relation_name":"is_a","term_name":"RNA expression level","termid":"PomGeneEx:0000009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA present","synonyms":[{"name":"RNA expression present","type":"exact"}],"termid":"PomGeneEx:0000014"}


id: FYPO:0001919
data:
  {"alleles_by_uniquename":{"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115650],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the nucleus is broken into multiple small fragments that are smaller than a normal nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear morphology during vegetative growth","termid":"FYPO:0000062"},{"relation_name":"is_a","term_name":"fragmented nucleus","termid":"FYPO:0006661"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04464":null},"genotype_count":1,"genotypes_by_uniquename":{"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002403","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"fragmented nucleus during vegetative growth","references_by_uniquename":{"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_04464"],"single_locus_genotype_uniquenames":["pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"fragmented nuclear DNA during vegetative growth","type":"related"},{"name":"fragmented nucleus during mitotic cell cycle","type":"related"},{"name":"loss of nuclear integrity during vegetative growth","type":"related"}],"termid":"FYPO:0001919","terms_by_termid":{"FYECO:0000004":null,"FYPO:0003976":null}}


id: GO:0032434
data:
  {"annotated_genes":["SJAG_00052","SJAG_02485","SJAG_02723","SJAG_00071","SJAG_00475","SJAG_00642","SJAG_03048","SJAG_03699","SJAG_01210"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110783],"is_not":false,"summary":null,"term":"GO:0032434"},{"annotations":[98456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905785"},{"annotations":[86431,103071],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032435"},{"annotations":[84979],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905786"},{"annotations":[113250,98478,105023,107861,102770],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032436"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of proteasomal protein catabolic process","termid":"GO:0061136"},{"relation_name":"is_a","term_name":"regulation of ubiquitin-dependent protein catabolic process","termid":"GO:2000058"},{"relation_name":"regulates","term_name":"proteasome-mediated ubiquitin-dependent protein catabolic process","termid":"GO:0043161"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00052":null,"SJAG_00071":null,"SJAG_00475":null,"SJAG_00642":null,"SJAG_01210":null,"SJAG_02485":null,"SJAG_02723":null,"SJAG_03048":null,"SJAG_03699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"regulation of proteasomal ubiquitin-dependent protein catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032434","terms_by_termid":{"GO:0032434":null,"GO:0032435":null,"GO:0032436":null,"GO:1905785":null,"GO:1905786":null}}


id: PR:O13601
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rsp1 gene.","definition_xrefs":["UniProtKB:O13601","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ-related protein rsp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11B10.05c","synonyms":[{"name":"Spom972h-rsp1","type":"exact"}],"termid":"PR:O13601"}


id: PATO:0001256
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of orange color and low brightness.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orange","termid":"PATO:0000953"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dark orange","termid":"PATO:0001256"}


id: GO:1900071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of sulfite transmembrane transport.","definition_xrefs":["PMID:10870099","GOC:TermGenie","PMID:10234785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of inorganic anion transmembrane transport","termid":"GO:1903795"},{"relation_name":"regulates","term_name":"sulfite transmembrane transport","termid":"GO:0000316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of sulfite transmembrane transport","synonyms":[{"name":"regulation of sulfite transport","type":"exact"},{"name":"regulation of sulphite transport","type":"exact"}],"termid":"GO:1900071"}


id: PBO:0046598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K3 member 8","termid":"PBO:0046598"}


id: PR:000037078
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that includes at least one sumoylated lysine.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sumoylated protein","synonyms":[{"name":"Prot/SumoLys+","type":"exact"}],"termid":"PR:000037078"}


id: PBO:0089637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mug129-like protein Mug129a","termid":"PBO:0089637"}


id: SO:0000584
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tmRNA liberates a mRNA from a stalled ribosome. To accomplish this part of the tmRNA is used as a reading frame that ends in a translation stop signal. The broken mRNA is replaced in the ribosome by the tmRNA and translation of the tmRNA leads to addition of a proteolysis tag to the incomplete protein enabling recognition by a protease. Recently a number of permuted tmRNAs genes have been found encoded in two parts. TmRNAs have been identified in eubacteria and some chloroplasts but are absent from archeal and Eukaryote nuclear genomes.","direct_ancestors":[{"relation_name":"is_a","term_name":"small_regulatory_ncRNA","termid":"SO:0000370"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tmRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/TmRNA"],"synonyms":[{"name":"10Sa RNA","type":"related"},{"name":"INSDC_feature:tmRNA","type":"exact"},{"name":"ssrA","type":"related"}],"termid":"SO:0000584"}


id: GO:0070743
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that is composed of an interleukin-23 alpha (p19, product of the IL23A gene) and an interleukin-12 beta (p40, product of the IL12B gene) subunit and is secreted into the extracellular space.","definition_xrefs":["PMID:11114383","GOC:add","PMID:15999093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"extracellular space","termid":"GO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005576"],"is_obsolete":false,"name":"interleukin-23 complex","synonyms":[{"name":"IL-23 complex","type":"exact"},{"name":"IL12B","type":"narrow"},{"name":"IL23A","type":"narrow"},{"name":"p19","type":"narrow"},{"name":"p40","type":"narrow"}],"termid":"GO:0070743"}


id: FYPO:0004276
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transcription regulation phenotype in which any process of negative regulation of transcription is abnormal during G0 phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of transcription","termid":"FYPO:0004526"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"abnormal negative regulation of transcription during G0","synonyms":[{"name":"abnormal down regulation of gene-specific transcription during G0","type":"related"},{"name":"abnormal down regulation of transcription, DNA-dependent, during G0","type":"exact"},{"name":"abnormal down-regulation of gene-specific transcription during G0","type":"related"},{"name":"abnormal down-regulation of transcription, DNA-dependent, during G0","type":"exact"},{"name":"abnormal downregulation of gene-specific transcription during G0","type":"related"},{"name":"abnormal downregulation of transcription, DNA-dependent, during G0","type":"exact"},{"name":"abnormal inhibition of gene-specific transcription during G0","type":"related"},{"name":"abnormal inhibition of transcription, DNA-dependent, during G0","type":"narrow"},{"name":"abnormal negative regulation of cellular transcription, DNA-dependent, during G0","type":"exact"},{"name":"abnormal negative regulation of gene-specific transcription during G0","type":"related"},{"name":"abnormal negative regulation of transcription during cell quiescence","type":"exact"},{"name":"abnormal negative regulation of transcription during quiescence","type":"exact"},{"name":"abnormal negative regulation of transcription, DNA-dependent, during G0","type":"exact"}],"termid":"FYPO:0004276"}


id: FYPO:0000152
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A stress response phenotype in which the response to nitrogen starvation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular response to starvation","termid":"FYPO:0000713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cellular response to nitrogen starvation","synonyms":[{"name":"abnormal cellular response to nitrogen depletion","type":"exact"},{"name":"abnormal cellular response to nitrogen deprivation","type":"exact"}],"termid":"FYPO:0000152"}


id: GO:0043128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the activity of 1-phosphatidylinositol 4-kinase.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of 1-phosphatidylinositol 4-kinase activity (obsolete GO:0043128)","synonyms":[{"name":"activation of 1-phosphatidylinositol 4-kinase activity","type":"narrow"},{"name":"positive regulation of PI4K activity","type":"exact"},{"name":"stimulation of 1-phosphatidylinositol 4-kinase activity","type":"narrow"},{"name":"up regulation of 1-phosphatidylinositol 4-kinase activity","type":"exact"},{"name":"up-regulation of 1-phosphatidylinositol 4-kinase activity","type":"exact"},{"name":"upregulation of 1-phosphatidylinositol 4-kinase activity","type":"exact"}],"termid":"GO:0043128"}


id: GO:0045623
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of T-helper cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"negative regulation of CD4-positive, alpha-beta T cell differentiation","termid":"GO:0043371"},{"relation_name":"is_a","term_name":"regulation of T-helper cell differentiation","termid":"GO:0045622"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"T-helper cell differentiation","termid":"GO:0042093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of T-helper cell differentiation","synonyms":[{"name":"down regulation of T-helper cell differentiation","type":"exact"},{"name":"down-regulation of T-helper cell differentiation","type":"exact"},{"name":"downregulation of T-helper cell differentiation","type":"exact"},{"name":"inhibition of T-helper cell differentiation","type":"narrow"},{"name":"negative regulation of T-helper cell development","type":"related"}],"termid":"GO:0045623"}


id: PBO:0076906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 264, ER-phagy receptor","termid":"PBO:0076906"}


id: PR:O94643
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mis17 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94643"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein mis17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21.01","synonyms":[{"name":"Spom972h-mis17","type":"exact"},{"name":"sim4 complex subunit mis17 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94643"}


id: PBO:0027720
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_acetylation","termid":"PBO:0027720"}


id: PBO:0079592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 D3 pseudogene 4","termid":"PBO:0079592"}


id: PBO:0072144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 21","termid":"PBO:0072144"}


id: PBO:0055845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat, Ig-like and transmembrane domains 1","termid":"PBO:0055845"}


id: PBO:0070537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 3","termid":"PBO:0070537"}


id: PBO:0055124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2543","termid":"PBO:0055124"}


id: GO:0006125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["GOC:mtg_electron_transport"],"gene_count":0,"genotype_count":0,"name":"obsolete thioredoxin pathway (obsolete GO:0006125)","secondary_identifiers":["MetaCyc:THIOREDOX-PWY"],"synonyms":[{"name":"thioredoxin pathway","type":"exact"},{"name":"thioredoxin reduction","type":"narrow"}],"termid":"GO:0006125"}


id: PBO:0054694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2103","termid":"PBO:0054694"}


id: MOD:00849
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a potassium atom for a hydrogen atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal or metal cluster containing modified residue","termid":"MOD:00698"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium containing modified residue","synonyms":[{"name":"KRes","type":"exact"}],"termid":"MOD:00849"}


id: PBO:0001667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT III complex subunit Did4","termid":"PBO:0001667"}


id: PBO:0048827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit gamma 12","termid":"PBO:0048827"}


id: PBO:0067096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 134, pseudogene","termid":"PBO:0067096"}


id: PBO:0079985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 23","termid":"PBO:0079985"}


id: PBO:0088300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha/Beta hydrolase fold","termid":"PBO:0088300"}


id: PBO:0088965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi mannan polymerase I complex subunit Mnn9","termid":"PBO:0088965"}


id: PBO:0029619
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_ATP-dependent_3'-5'_DNA_helicase_activity","termid":"PBO:0029619"}


id: MOD:00533
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["PubMed:12845591","Unimod:172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Shimadzu 12CNBS","synonyms":[{"name":"NBS","type":"related"},{"name":"Shimadzu NBS-12C","type":"related"}],"termid":"MOD:00533"}


id: PBO:0071757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 4","termid":"PBO:0071757"}


id: PBO:0045877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 delta pseudogene 1","termid":"PBO:0045877"}


id: PBO:0063228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin 11 Y-linked","termid":"PBO:0063228"}


id: PBO:0075913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST13, Hsp70 interacting protein pseudogene 5","termid":"PBO:0075913"}


id: FYPO:0005088
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that contains two nuclei and one or more septa, and undergoes two or more rounds of cell division, and then dies.","definition_xrefs":["PomBase:al","PomBase:mah","PMID:15829570"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions","termid":"FYPO:0002430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, binucleate septated cell","synonyms":[{"name":"inviable following spore germination, multiple cell divisions, binucleate septated cell","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, binucleate septated cell","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, binucleate septated cell","type":"exact"}],"termid":"FYPO:0005088"}


id: PBO:0070474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 9","termid":"PBO:0070474"}


id: PBO:0058271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4649","termid":"PBO:0058271"}


id: FYECO:0000308
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which doxorubicin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ doxorubicin","synonyms":[{"name":"+ 14-hydroxydaunomycin ","type":"related"},{"name":"+ 14-hydroxydaunorubicine ","type":"related"},{"name":"+ adriamycin","type":"related"}],"termid":"FYECO:0000308"}


id: PBO:0084178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Histone acetyltransferase catalytic subunit of NuA3 complex; acetylates histone H3, involved in transcriptional silencing; homolog of the mammalian MOZ proto-oncogene; mutant has aneuploidy tolerance; sas3gcn5 double mutation is lethal","termid":"PBO:0084178"}


id: MOD:01667
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by formation of an adduct with epicocconone.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"},{"relation_name":"is_a","term_name":"epicocconone derivatized residue","termid":"MOD:01666"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6-epicoccononyl lysine adduct","synonyms":[{"name":"(6Z,7aS)-3-[(1Z,4E,6E,8E)-1-hydroxy-3-oxodeca-1,4,6,8-tetraen-1-yl]-7a-methyl-6-[([(1S)-1-amino-1-carboxylpentyl]amino)methylidene]-5-[(2S)-2,3-dihydroxypropyl]-1-benzofuran-2,7(6H,7aH)-dione","type":"exact"},{"name":"DeepPurple","type":"exact"},{"name":"LavaPurple","type":"exact"},{"name":"Lightning Fast","type":"exact"}],"termid":"MOD:01667"}


id: GO:0034841
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: mentha-1,3-dione + CoASH = 3,7-dimethyl-5-oxo-octyl-CoA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete mentha-1,3-dione-CoA ligase activity (obsolete GO:0034841)","termid":"GO:0034841"}


id: GO:0005746
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.","definition_xrefs":["GOC:curators","GOC:ecd","ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial respirasome (obsolete GO:0005746)","synonyms":[{"name":"mitochondrial electron transport chain","type":"exact"},{"name":"mitochondrial respiratory chain","type":"exact"},{"name":"mitochondrial respiratory chain supercomplex","type":"exact"},{"name":"mitochondrial respiratory supercomplex","type":"exact"}],"termid":"GO:0005746"}


id: GO:2000940
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of plant-type cell wall cellulose catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of plant-type cell wall cellulose catabolic process","termid":"GO:2000939"},{"relation_name":"is_a","term_name":"negative regulation of cell wall polysaccharide catabolic process","termid":"GO:2000967"},{"relation_name":"negatively_regulates","term_name":"plant-type cell wall cellulose catabolic process","termid":"GO:0044348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of plant-type cell wall cellulose catabolic process","synonyms":[{"name":"negative regulation of plant-type cell wall polysaccharide breakdown","type":"exact"}],"termid":"GO:2000940"}


id: PR:Q9C1W4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A UPF0057 membrane protein YqaE that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02628","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane proteolipid 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC713.11c","secondary_identifiers":["UniProtKB:Q9C1W4"],"synonyms":[{"name":"Spom972h-yqaE","type":"exact"}],"termid":"PR:Q9C1W4"}


id: PBO:0075926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST13, Hsp70 interacting protein pseudogene 18","termid":"PBO:0075926"}


id: GO:0061502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the recycling endosomes.","definition_xrefs":["GOC:dph","GOC:kmv","PMID:21474295"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle-mediated transport between endosomal compartments","termid":"GO:0098927"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"early endosome to recycling endosome transport","termid":"GO:0061502"}


id: GO:0042692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a muscle cell.","definition_xrefs":["CL:0000187","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"muscle structure development","termid":"GO:0061061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle cell differentiation","synonyms":[{"name":"myogenesis","type":"related"}],"termid":"GO:0042692"}


id: GO:0043314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate of neutrophil degranulation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of myeloid leukocyte mediated immunity","termid":"GO:0002887"},{"relation_name":"is_a","term_name":"negative regulation of leukocyte degranulation","termid":"GO:0043301"},{"relation_name":"is_a","term_name":"regulation of neutrophil degranulation","termid":"GO:0043313"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"neutrophil degranulation","termid":"GO:0043312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"negative regulation of neutrophil degranulation","synonyms":[{"name":"down regulation of neutrophil degranulation","type":"exact"},{"name":"down-regulation of neutrophil degranulation","type":"exact"},{"name":"downregulation of neutrophil degranulation","type":"exact"},{"name":"inhibition of neutrophil degranulation","type":"narrow"},{"name":"negative regulation of neutrophil granule exocytosis","type":"exact"}],"termid":"GO:0043314"}


id: PBO:0084930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA-binding protein of the PUF family; binds to specific mRNAs, often in the 3' UTR; has broad specificity and binds to more than 1000 mRNAs (16% of the transcriptome); recruits the CCR4-NOT deadenylase complex to mRNAs along with Dhh1p and Dcp1p to promote deadenylation, decapping, and decay; also interacts with the Caf20p translational initiation repressor, affecting its mRNA target specificity","termid":"PBO:0084930"}


id: PBO:0005827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosine deaminase (predicted)","termid":"PBO:0005827"}


id: PBO:0050687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 8 pseudogene 14","termid":"PBO:0050687"}


id: GO:0075181
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of its transcription as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of symbiont transcription in response to host (obsolete GO:0075181)","termid":"GO:0075181"}


id: PBO:0029710
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_population_growth_at_high_pH","termid":"PBO:0029710"}


id: FYPO:0002184
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of ungerminated spores, germinated spores and tapered vegetative cells. The tapered cells arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including spores, germinated spores and tapered cells (obsolete FYPO:0002184)","synonyms":[{"name":"inviable mixed population including spores, germinated spores and bottle/skittle cells","type":"exact"},{"name":"inviable mixed population including spores, germinated spores and skittle-shaped cells","type":"exact"}],"termid":"FYPO:0002184"}


id: GO:0060885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process that contributes to the shaping of the semicircular canal by removing cells in the fusion plate, forming the loops of the canals.","definition_xrefs":["GOC:dph","GOC:mtg_apoptosis","GOC:tb","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process involved in morphogenesis","termid":"GO:0060561"},{"relation_name":"is_a","term_name":"clearance of cells from fusion plate","termid":"GO:0060884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"clearance of cells from fusion plate by apoptotic process","synonyms":[{"name":"clearance of cells from fusion plate by apoptosis","type":"narrow"}],"termid":"GO:0060885"}


id: PBO:0083592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF Q0017","termid":"PBO:0083592"}


id: GO:0009606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of an organism, or part of an organism, in response to an external source of stimulus, usually toward or away from it.","definition_xrefs":["GOC:curators","ISBN:0877795088"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to external stimulus","termid":"GO:0009605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tropism","secondary_identifiers":["Wikipedia:Tropism"],"termid":"GO:0009606"}


id: PBO:0089304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inorganic diphosphatase","termid":"PBO:0089304"}


id: GO:0038180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by nerve growth factor (NGF) binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:bf","PMID:11520933"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotrophin signaling pathway","termid":"GO:0038179"},{"relation_name":"part_of","term_name":"cellular response to nerve growth factor stimulus","termid":"GO:1990090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"nerve growth factor signaling pathway","secondary_identifiers":["Wikipedia:Nerve_growth_factor"],"synonyms":[{"name":"NGF signaling pathway","type":"exact"},{"name":"nerve growth factor signalling pathway","type":"exact"}],"termid":"GO:0038180"}


id: GO:0004363
data:
  {"annotated_genes":["SJAG_01351"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93087],"is_not":false,"summary":null,"term":"GO:0004363"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-gamma-glutamyl-L-cysteine + ATP + glycine = ADP + glutathione + 2 H+ + phosphate.","definition_xrefs":["RHEA:13557","EC:6.3.2.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"},{"relation_name":"is_a","term_name":"non-ribosomal peptide synthetase activity","termid":"GO:1904091"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01351":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"glutathione synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-174394","KEGG_REACTION:R00497","Reactome:R-HSA-5602901","MetaCyc:GLUTATHIONE-SYN-RXN"],"synonyms":[{"name":"GSH synthetase activity","type":"related"},{"name":"gamma-L-glutamyl-L-cysteine:glycine ligase (ADP-forming)","type":"related"},{"name":"glutathione synthetase activity","type":"related"}],"termid":"GO:0004363","terms_by_termid":{"GO:0004363":null}}


id: GO:0140609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions or pathway resulting in the formation of phycocyanobilin, which involves the oxidative cleavage of heme by a heme oxygenase (HO) to form biliverdin IX alpha. Biliverdin IX alpha is subsequently converted to phycocyanobilin by a ferredoxin-dependent oxidoreductase (PCYA).","definition_xrefs":["PMID:23345435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetrapyrrole biosynthetic process","termid":"GO:0033014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"phycocyanobilin biosynthetic process","synonyms":[{"name":"phycocyanobilin biosynthesis","type":"exact"}],"termid":"GO:0140609"}


id: GO:1900736
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phospholipase C-activating G protein-coupled receptor signaling pathway.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of G protein-coupled receptor signaling pathway","termid":"GO:0008277"},{"relation_name":"regulates","term_name":"phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:0007200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of phospholipase C-activating G protein-coupled receptor signaling pathway","synonyms":[{"name":"regulation of G protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"regulation of G protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"regulation of G-protein coupled receptor signaling pathway coupled to IP3 second messenger","type":"exact"},{"name":"regulation of G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"regulation of G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"exact"},{"name":"regulation of PLC-activating GPCR signaling pathway","type":"exact"},{"name":"regulation of activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger","type":"related"},{"name":"regulation of phospholipase C-activating G-protein coupled receptor signaling pathway","type":"exact"},{"name":"regulation of phospholipase C-activating dopamine receptor signaling pathway","type":"narrow"}],"termid":"GO:1900736"}


id: PBO:0084753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial matrix co-chaperonin; inhibits the ATPase activity of Hsp60p, a mitochondrial chaperonin; involved in protein folding and sorting in the mitochondria; 10 kD heat shock protein with similarity to E. coli groES","termid":"PBO:0084753"}


id: GO:0002579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"is_a","term_name":"positive regulation of immune system process","termid":"GO:0002684"},{"relation_name":"positively_regulates","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of antigen processing and presentation","synonyms":[{"name":"activation of antigen processing and presentation","type":"narrow"},{"name":"stimulation of antigen processing and presentation","type":"narrow"},{"name":"up regulation of antigen processing and presentation","type":"exact"},{"name":"up-regulation of antigen processing and presentation","type":"exact"},{"name":"upregulation of antigen processing and presentation","type":"exact"}],"termid":"GO:0002579"}


id: PBO:0090483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-acylglycerol-3-phosphate O-acyltransferase Vps66","termid":"PBO:0090483"}


id: GO:0060107
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The extracellular matrix that is a regularly spaced circumferential ridge present in the cortical region of the cuticle. Annuli are delineated by annular furrows and are present throughout the cuticle with the exception of lateral regions where longitudinal alae are present.","definition_xrefs":["ISSN:15518507","GOC:dph","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cortical layer of collagen and cuticulin-based cuticle extracellular matrix","termid":"GO:0060106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"annuli extracellular matrix","synonyms":[{"name":"annulae","type":"related"},{"name":"annular rings","type":"related"},{"name":"annule(s)","type":"related"},{"name":"annulus","type":"related"}],"termid":"GO:0060107"}


id: PATO:0000801
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000801 motor function value (obsolete PATO:0000801)","termid":"PATO:0000801"}


id: PBO:0002020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorbose reductase (predicted)","termid":"PBO:0002020"}


id: PBO:0111068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fbp1 upstream regulatory lncRNA c","termid":"PBO:0111068"}


id: PBO:0091341
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWItching","termid":"PBO:0091341"}


id: PBO:0062200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily W member 1 pseudogene","termid":"PBO:0062200"}


id: PR:P78768
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vti1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P78768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicle transport v-SNARE protein vti1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B9.10","synonyms":[{"name":"Spom972h-vti1","type":"exact"}],"termid":"PR:P78768"}


id: PBO:0075085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 135","termid":"PBO:0075085"}


id: PBO:0076249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUZ12 polycomb repressive complex 2 subunit","termid":"PBO:0076249"}


id: PBO:0002860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudouridylate synthase Cbf5 (predicted)","termid":"PBO:0002860"}


id: PBO:0066852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 152","termid":"PBO:0066852"}


id: PBO:0110362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJC9 pseudogene 1","termid":"PBO:0110362"}


id: PBO:0051932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inter-alpha-trypsin inhibitor heavy chain 4","termid":"PBO:0051932"}


id: GO:0051056
data:
  {"annotated_genes":["SJAG_04943","SJAG_03681","SJAG_02379","SJAG_02514","SJAG_00526","SJAG_03353","SJAG_04455","SJAG_00329","SJAG_03508","SJAG_03936","SJAG_04776","SJAG_03488","SJAG_00600","SJAG_03592","SJAG_01790","SJAG_00883","SJAG_03631","SJAG_06270","SJAG_03048","SJAG_00078","SJAG_00229","SJAG_00082","SJAG_01386","SJAG_04329","SJAG_04462","SJAG_01805","SJAG_01464","SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107507],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046580"},{"annotations":[101460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035024"},{"annotations":[106307,87753,95670,86757,95750,88956,103220,88870,91694,112069,97359,103359,103668,101150,89493],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031030"},{"annotations":[87184],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046579"},{"annotations":[89847,98481,106661,83575,86034],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031031"},{"annotations":[69156,112673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032483"},{"annotations":[85994,100616,109520],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031029"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"small GTPase-mediated signal transduction","termid":"GO:0007264"}],"gene_count":28,"genes_by_uniquename":{"SJAG_00078":null,"SJAG_00082":null,"SJAG_00229":null,"SJAG_00329":null,"SJAG_00526":null,"SJAG_00600":null,"SJAG_00883":null,"SJAG_01386":null,"SJAG_01464":null,"SJAG_01790":null,"SJAG_01805":null,"SJAG_02169":null,"SJAG_02379":null,"SJAG_02514":null,"SJAG_03048":null,"SJAG_03353":null,"SJAG_03488":null,"SJAG_03508":null,"SJAG_03592":null,"SJAG_03631":null,"SJAG_03681":null,"SJAG_03936":null,"SJAG_04329":null,"SJAG_04455":null,"SJAG_04462":null,"SJAG_04776":null,"SJAG_04943":null,"SJAG_06270":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of small GTPase mediated signal transduction","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of small GTPase-mediated signal transduction","type":"exact"}],"termid":"GO:0051056","terms_by_termid":{"GO:0031029":null,"GO:0031030":null,"GO:0031031":null,"GO:0032483":null,"GO:0035024":null,"GO:0046579":null,"GO:0046580":null}}


id: PR:Q10065
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trk2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium transport protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1639.02c","synonyms":[{"name":"Spom972h-trk2","type":"exact"}],"termid":"PR:Q10065"}


id: GO:0097646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by an extracellular member of the calcitonin family (e.g. adrenomedullin, adrenomedullin 2 (intermedin), amylin, calcitonin and calcitonin gene-related peptides (CGRPs)) binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process.","definition_xrefs":["PMID:12037140","PMID:18687416","GOC:bhm","PMID:10871296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"calcitonin family receptor signaling pathway","synonyms":[{"name":"calcitonin family receptor signalling pathway","type":"exact"}],"termid":"GO:0097646"}


id: PBO:0046973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 85 member B","termid":"PBO:0046973"}


id: PR:O14310
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- npp106 gene.","definition_xrefs":["UniProtKB:O14310","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin npp106 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.14","synonyms":[{"name":"Spom972h-npp106","type":"exact"},{"name":"nuclear pore protein npp106 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14310"}


id: PBO:0056971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 26a-2","termid":"PBO:0056971"}


id: PBO:0084980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH-dependent aldehyde reductase; reduces many aldehyde compounds including glycolaldehyde, formaldehyde and furfural; transcription unregulated by furfural, 5-hydroxymethylfurfural (HMF) and the mycotoxin patulin; expression increased by multidrug resistance transcription factors Yrm1p and Yrr1p; member of atypical subgroup 7 of the short-chain dehydrogenase/reductase (SDR) family; localizes to the cytoplasm; SWAT-GFP and mCherry fusion proteins localize to the ER and vacuole respectively","termid":"PBO:0084980"}


id: PATO:0001673
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Structure quality that is the presence of closed epithelium bounded capsules containing one or more liquid or solid organism substances.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure, cavities","termid":"PATO:0002014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystic","synonyms":[{"name":"cysts","type":"narrow"}],"termid":"PATO:0001673"}


id: GO:2000156
data:
  {"annotated_genes":["SJAG_02419"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109779],"is_not":false,"summary":null,"term":"GO:2000156"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of retrograde vesicle-mediated transport, Golgi to ER.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vesicle-mediated transport","termid":"GO:0060627"},{"relation_name":"regulates","term_name":"retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum","termid":"GO:0006890"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02419":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of retrograde vesicle-mediated transport, Golgi to ER","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of cis-Golgi to rough ER transport","type":"exact"},{"name":"regulation of cis-Golgi to rough ER vesicle-mediated transport","type":"exact"},{"name":"regulation of cis-Golgi to rough endoplasmic reticulum transport","type":"exact"},{"name":"regulation of cis-Golgi to rough endoplasmic reticulum vesicle-mediated transport","type":"exact"},{"name":"regulation of retrograde (Golgi to ER) transport","type":"exact"},{"name":"regulation of retrograde transport, Golgi to ER","type":"exact"},{"name":"regulation of retrograde transport, Golgi to endoplasmic reticulum","type":"exact"},{"name":"regulation of retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum","type":"related"}],"termid":"GO:2000156","terms_by_termid":{"GO:2000156":null}}


id: PBO:0091512
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"although the specificity is different Imt1/A4GALT are in equivalent pathway postitions","termid":"PBO:0091512"}


id: PBO:0048100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FTO alpha-ketoglutarate dependent dioxygenase","termid":"PBO:0048100"}


id: GO:0005817
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:clt"],"gene_count":0,"genotype_count":0,"name":"obsolete centrosomal mitotic factor (obsolete GO:0005817)","synonyms":[{"name":"centrosomal mitotic factor","type":"exact"}],"termid":"GO:0005817"}


id: SO:0002222
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory_region essential for the specific initiation of transcription at a defined location in a DNA molecule, although this location might not be one single base. It is recognized by a specific RNA polymerase(RNAP)-holoenzyme, and this recognition is not necessarily autonomous.","definition_xrefs":["PMID:32665585"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter","termid":"SO:0000167"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prokaryotic_promoter","synonyms":[{"name":"Prokaryotic promoter","type":"exact"}],"termid":"SO:0002222"}


id: GO:0030413
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A small peptide excreted by a naturally transformable bacterium (e.g. Bacillus subtilis) that transmits a signal required for the establishment of competence.","definition_xrefs":["GOC:mah","PMID:7698645"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pheromone activity","termid":"GO:0005186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0005186"}],"interesting_parent_ids":["GO:0003674","GO:0005186","GO:0140677","GO:0005515","GO:0005488","GO:0098772"],"is_obsolete":false,"name":"competence pheromone activity","termid":"GO:0030413"}


id: PBO:0082936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family; involved in mRNA export from the nucleus, remodeling messenger ribonucleoprotein particles (mRNPs), with ATPase activity stimulated by Gle1p, IP6 and Nup159p; involved in translation termination along with Sup45p (eRF1); role in the cellular response to heat stress","termid":"PBO:0082936"}


id: PBO:0059137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPHOSPH10 pseudogene 4","termid":"PBO:0059137"}


id: PBO:0028432
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cytogamy","termid":"PBO:0028432"}


id: PR:Q9P778
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1711.12 gene.","definition_xrefs":["UniProtKB:Q9P778","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidyl-peptidase 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1711.12","synonyms":[{"name":"DPP V (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DppV (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPBC1711.12","type":"exact"},{"name":"dipeptidyl-peptidase V (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P778"}


id: PBO:0046340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectonucleotide pyrophosphatase/phosphodiesterase family member 5","termid":"PBO:0046340"}


id: GO:0042442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of melatonin (N-acetyl-5-methoxytryptamine).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melatonin metabolic process","termid":"GO:0030186"},{"relation_name":"is_a","term_name":"indole-containing compound catabolic process","termid":"GO:0042436"},{"relation_name":"is_a","term_name":"hormone catabolic process","termid":"GO:0042447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"melatonin catabolic process","secondary_identifiers":["GO:0042449"],"synonyms":[{"name":"melatonin breakdown","type":"exact"},{"name":"melatonin catabolism","type":"exact"},{"name":"melatonin degradation","type":"exact"}],"termid":"GO:0042442"}


id: GO:0044332
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell contributing to the establishment, maintenance and elaboration of the dorsal/ventral axis.","definition_xrefs":["GOC:yaf","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete Wnt signaling pathway involved in dorsal/ventral axis specification (obsolete GO:0044332)","synonyms":[{"name":"Wnt receptor signaling pathway involved in dorsal/ventral axis specification","type":"exact"},{"name":"Wnt receptor signalling pathway involved in dorsal/ventral axis specification","type":"exact"},{"name":"Wnt-activated signaling pathway involved in dorsal/ventral axis specification","type":"exact"}],"termid":"GO:0044332"}


id: SO:0000110
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Any extent of continuous biological sequence.","definition_xrefs":["SO:ke","LAMHDI:mb"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence_feature","synonyms":[{"name":"INSDC_feature:misc_feature","type":"exact"},{"name":"INSDC_note:other","type":"exact"},{"name":"INSDC_note:sequence_feature","type":"exact"},{"name":"located sequence feature","type":"related"},{"name":"located_sequence_feature","type":"exact"},{"name":"sequence feature","type":"exact"}],"termid":"SO:0000110"}


id: PBO:0027864
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K4_acetylation","termid":"PBO:0027864"}


id: PBO:0060862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIMA related kinase 5","termid":"PBO:0060862"}


id: PBO:0028902
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_phosphorylation_during_cellular_response_to_DNA_damage","termid":"PBO:0028902"}


id: PBO:0041369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C4orf46 pseudogene 1","termid":"PBO:0041369"}


id: PBO:0085549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; homologous to mammalian ribosomal protein S14 and bacterial S11; RPS14B has a paralog, RPS14A, that arose from the whole genome duplication","termid":"PBO:0085549"}


id: PBO:0017504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium ion transmembrane transporter Trk2","termid":"PBO:0017504"}


id: GO:0090205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of cholesterol metabolism, the chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.","definition_xrefs":["GOC:dph","GOC:sl","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of steroid metabolic process","termid":"GO:0045940"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of cholesterol metabolic process","termid":"GO:0090181"},{"relation_name":"positively_regulates","term_name":"cholesterol metabolic process","termid":"GO:0008203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cholesterol metabolic process","termid":"GO:0090205"}


id: PBO:0072990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Scm polycomb group protein homolog 1","termid":"PBO:0072990"}


id: PBO:0068590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 41, pseudogene","termid":"PBO:0068590"}


id: FYECO:0000273
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing salts, water, a nitrogen source but no glucose.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose MM, no glucose","termid":"FYECO:0000273"}


id: GO:0016444
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Recombination occurring within or between DNA molecules in somatic cells.","definition_xrefs":["GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA recombination","termid":"GO:0006310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006310","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"somatic cell DNA recombination","termid":"GO:0016444"}


id: PBO:0078725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Met (anticodon CAT) 1-1","termid":"PBO:0078725"}


id: PATO:0001217
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001217 energy_unit (obsolete PATO:0001217)","termid":"PATO:0001217"}


id: PATO:0002032
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam.","definition_xrefs":["PATOC:mc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radiation reflective quality","termid":"PATO:0001294"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forward scatter","termid":"PATO:0002032"}


id: PR:Q9UT23
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fml1 gene.","definition_xrefs":["UniProtKB:Q9UT23","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase fml1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9.05","synonyms":[{"name":"FANCM-like protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-fml1","type":"exact"}],"termid":"PR:Q9UT23"}


id: PBO:0074663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 50C","termid":"PBO:0074663"}


id: GO:0031918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that increases synaptic metaplasticity. Metaplasticity is a higher-order form of plasticity and is manifest as a change in the ability to induce subsequent synaptic plasticity that is the ability of synapses to change as circumstances require.","definition_xrefs":["GOC:mah","PMID:8658594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of synaptic plasticity","termid":"GO:0031915"},{"relation_name":"is_a","term_name":"regulation of synaptic metaplasticity","termid":"GO:0031916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of synaptic metaplasticity","synonyms":[{"name":"activation of synaptic metaplasticity","type":"narrow"},{"name":"stimulation of synaptic metaplasticity","type":"narrow"},{"name":"up regulation of synaptic metaplasticity","type":"exact"},{"name":"up-regulation of synaptic metaplasticity","type":"exact"},{"name":"upregulation of synaptic metaplasticity","type":"exact"}],"termid":"GO:0031918"}


id: GO:1990929
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyzes the hydrolysis of terminal non-reducing alpha-sulfoquinovoside residues in alpha-sulfoquinovosyl diacylglycerides and alpha-sulfoquinovosyl glycerol, generating alpha-sulfoquinovose.","definition_xrefs":["PMID:26878550","GOC:imk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on glycosyl bonds","termid":"GO:0016798"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016798","GO:0016787"],"is_obsolete":false,"name":"sulfoquinovosidase activity","termid":"GO:1990929"}


id: PR:Q9P7X9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A solute carrier family 25 member 39 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized mitochondrial carrier P23A10.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP23A10.06","secondary_identifiers":["UniProtKB:Q9P7X9"],"synonyms":[{"name":"Spom972h-SLC25A39","type":"exact"}],"termid":"PR:Q9P7X9"}


id: PBO:0075938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 and cysteine rich domain","termid":"PBO:0075938"}


id: GO:1904199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of regulation of vascular smooth muscle cell membrane depolarization.","definition_xrefs":["GO_REF:0000058","PMID:20826763","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of membrane depolarization","termid":"GO:1904181"},{"relation_name":"positively_regulates","term_name":"regulation of vascular associated smooth muscle cell membrane depolarization","termid":"GO:1990736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of regulation of vascular associated smooth muscle cell membrane depolarization","synonyms":[{"name":"activation of regulation of vascular smooth muscle cell membrane depolarization","type":"narrow"},{"name":"positive regulation of regulation of vascular smooth muscle cell membrane depolarization","type":"exact"},{"name":"up regulation of regulation of vascular smooth muscle cell membrane depolarization","type":"exact"},{"name":"up-regulation of regulation of vascular smooth muscle cell membrane depolarization","type":"exact"},{"name":"upregulation of regulation of vascular smooth muscle cell membrane depolarization","type":"exact"}],"termid":"GO:1904199"}


id: PBO:0074108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC28A3 regulatory antisense RNA 1","termid":"PBO:0074108"}


id: PR:Q8WZJ9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A solute carrier family 35 member B1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02527","PANTHER:PTHR10778:SF10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-galactose transporter homolog 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC839.11c","secondary_identifiers":["UniProtKB:Q8WZJ9"],"synonyms":[{"name":"Spom972h-SLC35B1","type":"exact"}],"termid":"PR:Q8WZJ9"}


id: GO:1905780
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phosphatidylserine exposure on apoptotic cell surface.","definition_xrefs":["GOC:TermGenie","GOC:kmv","PMID:17401362","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phospholipid translocation","termid":"GO:0061091"},{"relation_name":"is_a","term_name":"regulation of plasma membrane organization","termid":"GO:1903729"},{"relation_name":"regulates","term_name":"phosphatidylserine exposure on apoptotic cell surface","termid":"GO:0070782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of phosphatidylserine exposure on apoptotic cell surface","synonyms":[{"name":"regulation of externalization of phosphatidylserine","type":"exact"}],"termid":"GO:1905780"}


id: GO:0050733
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an RS domain of a protein; RS domains are usually highly phosphorylated and characterized by the presence of arginine (R)/serine (S) dipeptides. The RS domain promotes protein-protein interactions and directs subcellular localization and, in certain situations, nucleocytoplasmic shuttling of individual SR proteins. They also play a role in splicing.","definition_xrefs":["PMID:12215544","PMID:11684676"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"RS domain binding","termid":"GO:0050733"}


id: GO:0050669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving homocysteine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sulfur amino acid metabolic process","termid":"GO:0031336"},{"relation_name":"is_a","term_name":"negative regulation of cellular amino acid metabolic process","termid":"GO:0045763"},{"relation_name":"is_a","term_name":"regulation of homocysteine metabolic process","termid":"GO:0050666"},{"relation_name":"negatively_regulates","term_name":"homocysteine metabolic process","termid":"GO:0050667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0006790","GO:0044281"],"is_obsolete":false,"name":"negative regulation of homocysteine metabolic process","synonyms":[{"name":"down regulation of homocysteine metabolic process","type":"exact"},{"name":"down-regulation of homocysteine metabolic process","type":"exact"},{"name":"downregulation of homocysteine metabolic process","type":"exact"},{"name":"inhibition of homocysteine metabolic process","type":"narrow"},{"name":"negative regulation of Hcy metabolic process","type":"exact"},{"name":"negative regulation of Hcy metabolism","type":"exact"},{"name":"negative regulation of homocysteine metabolism","type":"exact"}],"termid":"GO:0050669"}


id: GO:0061392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.","definition_xrefs":["GOC:dph","PMID:12086627","PMID:9858577"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter in response to osmotic stress (obsolete GO:0061392)","termid":"GO:0061392"}


id: PBO:0091957
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae HEF3","termid":"PBO:0091957"}


id: GO:0048180
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A nonsteroidal regulator, composed of two covalently linked inhibin beta subunits, inhibin beta-A and inhibin beta-B (sometimes known as activin beta or activin/inhibin beta). There are three forms of activin complex, activin A, which is composed of 2 inhibin beta-A subunits, activin B, which is composed of 2 inhibin beta-B subunits, and activin AB, which is composed of an inhibin beta-A and an inhibin beta-B subunit.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"extracellular space","termid":"GO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0032991","GO:0005576","GO:0005575"],"is_obsolete":false,"name":"activin complex","termid":"GO:0048180"}


id: PBO:0059413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S35 pseudogene 3","termid":"PBO:0059413"}


id: PBO:0086868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative serine/threonine protein kinase with unknown cellular role; KKQ8 has a paralog, HAL5, that arose from the whole genome duplication","termid":"PBO:0086868"}


id: GO:0000511
data:
  {"annotated_genes":["SJAG_02314","SJAG_00942","SJAG_03128","SJAG_02035","SJAG_02416"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94220,104235,107418,107419,109764,109765,113083],"is_not":false,"summary":null,"term":"GO:0000511"}]},"cv_name":"molecular_function","definition":"A histone chaperone that carries a H2A-H2B histone complex.","definition_xrefs":["PMID:28053344"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone chaperone activity","termid":"GO:0140713"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00942":null,"SJAG_02035":null,"SJAG_02314":null,"SJAG_02416":null,"SJAG_03128":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140597"},{"rel_name":"is_a","termid":"GO:0140104"}],"interesting_parent_ids":["GO:0140597","GO:0003674","GO:0140104"],"is_obsolete":false,"name":"H2A-H2B histone complex chaperone activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"H2A-H2B histone carrier activity","type":"exact"}],"termid":"GO:0000511","terms_by_termid":{"GO:0000511":null}}


id: PBO:0068987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 231, pseudogene","termid":"PBO:0068987"}


id: PBO:0050933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon alpha 2","termid":"PBO:0050933"}


id: PBO:0052915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 15-1","termid":"PBO:0052915"}


id: PBO:0091867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein, S. japonicus protein (SJAG_00124) predicted on opposite strand, one is likely incorrect, similarity detected with tblastn (S. japonicus 4008650-4008727) in this frame","termid":"PBO:0091867"}


id: PBO:0087940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translation elongation factor 1 beta; stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle; part of the EF-1 complex, which facilitates binding of aminoacyl-tRNA to the ribosomal A site; human homolog EEF1B2 can complement yeast efb1 mutants","termid":"PBO:0087940"}


id: PBO:0070785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 15","termid":"PBO:0070785"}


id: PBO:0083401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps ORF YER134C","termid":"PBO:0083401"}


id: PBO:0078483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile (anticodon AAT) 5-3","termid":"PBO:0078483"}


id: PBO:0061007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NHS like 2","termid":"PBO:0061007"}


id: PBO:0001773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-CSL","termid":"PBO:0001773"}


id: PBO:0030426
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_centromere_clustering_at_nuclear_periphery","termid":"PBO:0030426"}


id: GO:0002253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that initiates an immune response.","definition_xrefs":["GO_REF:0000022","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"},{"relation_name":"is_a","term_name":"positive regulation of immune response","termid":"GO:0050778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"activation of immune response","termid":"GO:0002253"}


id: MOD:01895
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a 3x(12)C-labeled propanoyl group.","definition_xrefs":["PubMed:12175151","PubMed:11999733","PubMed:11857757","Unimod:58#N-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-amino propanoylated residue","termid":"MOD:00451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"alpha-amino 3x(12)C-labeled propanoylated residue","synonyms":[{"name":"Propionate labeling reagent light form (N-term & K)","type":"related"},{"name":"Propionyl","type":"related"}],"termid":"MOD:01895"}


id: PBO:0109610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycolysis associated regulator of LDHA post-transcriptional modification 1","termid":"PBO:0109610"}


id: FYPO:0002064
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a 3'-5'-exoribonuclease activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal 3'-5'-exoribonuclease activity","termid":"FYPO:0002063"},{"relation_name":"is_a","term_name":"abolished ribonuclease activity","termid":"FYPO:0006301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000654","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"abolished 3'-5'-exoribonuclease activity","synonyms":[{"name":"3'-5'-exoribonuclease activity abolished","type":"exact"}],"termid":"FYPO:0002064"}


id: PBO:0060254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYCN proto-oncogene, bHLH transcription factor","termid":"PBO:0060254"}


id: PBO:0065851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB11 family interacting protein 2","termid":"PBO:0065851"}


id: GO:0039641
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer of a virion contained inside the protein capsid.","definition_xrefs":["GOC:bm","PMID:15331712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral membrane","termid":"GO:0036338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"viral inner membrane","synonyms":[{"name":"virion inner membrane","type":"exact"}],"termid":"GO:0039641"}


id: FYPO:0001378
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of calcium ion measured in a cell during a cellular response to salt stress is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular calcium level","termid":"FYPO:0001198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular calcium level during cellular response to salt stress","synonyms":[{"name":"increased calcium accumulation during cellular response to salt stress","type":"related"},{"name":"increased cellular calcium ion level during cellular response to salt stress","type":"exact"},{"name":"increased cellular calcium level during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"increased cellular calcium level during cellular response to salt stress during vegetative growth","type":"exact"}],"termid":"FYPO:0001378"}


id: PBO:0001166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spore wall assembly ADAM family peptidase Mde10","termid":"PBO:0001166"}


id: PBO:0067825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 127","termid":"PBO:0067825"}


id: GO:0150119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to cell-cell junction.","definition_xrefs":["GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to cell-cell junction","termid":"GO:0150106"},{"relation_name":"is_a","term_name":"negative regulation of protein localization","termid":"GO:1903828"},{"relation_name":"negatively_regulates","term_name":"protein localization to cell-cell junction","termid":"GO:0150105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to cell-cell junction","synonyms":[{"name":"negative regulation of protein localisation to cell-cell junction","type":"exact"}],"termid":"GO:0150119"}


id: PBO:0076395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional adaptor 2B","termid":"PBO:0076395"}


id: PBO:0052298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KHDRBS2 3'UTR overlapping transcript 1","termid":"PBO:0052298"}


id: GO:0061507
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 2',3' cyclic GMP-AMP (cGAMP) nucleotide, a cyclic purine dinucleotide that consists of AMP and GMP units cyclized via 2',5' and 3',5' linkages.","definition_xrefs":["GOC:dph","PMID:23910378","PMID:23258412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenyl ribonucleotide binding","termid":"GO:0032559"},{"relation_name":"is_a","term_name":"guanyl ribonucleotide binding","termid":"GO:0032561"},{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"cyclic GMP-AMP binding","termid":"GO:0140702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"2',3'-cyclic GMP-AMP binding","secondary_identifiers":["GO:0098546"],"synonyms":[{"name":"2',3' cGAMP binding","type":"exact"},{"name":"2',3' cyclic GAMP binding","type":"exact"},{"name":"2',3'-cGAMP binding","type":"exact"},{"name":"2',3'-cyclic GAMP binding","type":"exact"},{"name":"2',5-3',5'-cyclic GMP-AMP binding","type":"exact"},{"name":"c[G(2',5')pA(3',5')p] binding","type":"exact"},{"name":"cyclic-GMP-AMP binding","type":"broad"}],"termid":"GO:0061507"}


id: PBO:0060258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYD88 innate immune signal transduction adaptor","termid":"PBO:0060258"}


id: PBO:0042936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ChaC glutathione specific gamma-glutamylcyclotransferase 2","termid":"PBO:0042936"}


id: PBO:0058918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA let-7a-1","termid":"PBO:0058918"}


id: PBO:0090392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex ubiquitin-protein ligase E3 subunit 4","termid":"PBO:0090392"}


id: PBO:0054084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1435","termid":"PBO:0054084"}


id: PBO:0053061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA associated with SART3 regulation of splicing","termid":"PBO:0053061"}


id: PBO:0004216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase Tdh1","termid":"PBO:0004216"}


id: GO:0120291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that inhibits or decreases the rate of mitotic recombination-dependent replication fork processing. Suppression of recombination at replication forks is necessary to prevent template switching.","definition_xrefs":["PMID:28586299","PMID:30667359","GOC:mah","PMID:31149897","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of DNA metabolic process","termid":"GO:0051053"},{"relation_name":"is_a","term_name":"regulation of mitotic recombination-dependent replication fork processing","termid":"GO:1903221"},{"relation_name":"negatively_regulates","term_name":"mitotic recombination-dependent replication fork processing","termid":"GO:1990426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"negatively_regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"negative regulation of mitotic recombination-dependent replication fork processing","synonyms":[{"name":"maintenance of template fidelity during replication fork processing","type":"exact"},{"name":"negative regulation of mitotic recombination involved in replication fork processing","type":"related"},{"name":"negative regulation of template switch recombination involved in replication fork processing","type":"exact"},{"name":"suppression of template switching during replication fork processing","type":"exact"}],"termid":"GO:0120291"}


id: PBO:0062589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily H member 4","termid":"PBO:0062589"}


id: GO:0061319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a nephrocyte. A nephrocyte is an insect renal cell that filters hemolymph. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.","definition_xrefs":["CL:0002520","GOC:dph","PMID:19783135","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal filtration cell differentiation","termid":"GO:0061318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nephrocyte differentiation","termid":"GO:0061319"}


id: PBO:0075049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-12","termid":"PBO:0075049"}


id: GO:0036309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is transported to, and/or maintained in, the M band. The M band is the midline of aligned thick filaments in a sarcomere.","definition_xrefs":["GOC:rl","PMID:18782775","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to organelle","termid":"GO:0033365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to M-band","synonyms":[{"name":"cellular protein localization to M-band","type":"exact"},{"name":"protein localization to M disc","type":"exact"},{"name":"protein localization to M line","type":"narrow"},{"name":"protein localization to mesophragma","type":"exact"}],"termid":"GO:0036309"}


id: SO:0001247
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An oligo composed of synthetic nucleotides.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligo","termid":"SO:0000696"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synthetic_oligo","synonyms":[{"name":"synthetic oligo","type":"exact"}],"termid":"SO:0001247"}


id: PBO:0074525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA C1","termid":"PBO:0074525"}


id: PBO:0113336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; null mutant displays elevated frequency of mitochondrial genome loss; localizes to mitochondria, cytosol and to the peroxisome in a Pex5p-dependent manner in glucose","termid":"PBO:0113336"}


id: GO:0099530
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A G protein-coupled receptor activity occurring in the postsynaptic membrane that is part of a GPCR signaling pathway that positively regulates ion channel activity in the postsynaptic membrane.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"G protein-coupled receptor activity involved in regulation of postsynaptic membrane potential","synonyms":[{"name":"G-protein coupled receptor activity involved in regulation of postsynaptic membrane potential","type":"exact"}],"termid":"GO:0099530"}


id: GO:0141105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which a symbiont interferes with, inhibits or disrupts a toll-like receptor signaling pathway in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:18327267","PMID:17299722","PMID:15944308"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression of host toll-like receptor signal transduction (obsolete GO:0141105)","synonyms":[{"name":"symbiont-mediated disruption of host toll-like receptor signaling pathway","type":"exact"},{"name":"symbiont-mediated suppression of host toll-like receptor signal transduction","type":"related"},{"name":"symbiont-mediated suppression of host toll-like receptor signaling pathway","type":"exact"}],"termid":"GO:0141105"}


id: PBO:0003890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGEF Gef3","termid":"PBO:0003890"}


id: PBO:0065225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 5 like","termid":"PBO:0065225"}


id: PBO:0059754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 28","termid":"PBO:0059754"}


id: FYPO:0003750
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell contains a normal number of nuclear pore complexes.","definition_xrefs":["PMID:9372936","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal nuclear pore density","synonyms":[{"name":"normal NPC density","type":"exact"},{"name":"normal nuclear pore complex density","type":"exact"},{"name":"normal nuclear pore density during mitotic cell cycle","type":"exact"},{"name":"normal nuclear pore density during vegetative growth","type":"exact"},{"name":"nuclear pore complexes present in normal number","type":"exact"},{"name":"nuclear pores present in normal number","type":"exact"}],"termid":"FYPO:0003750"}


id: GO:0001696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system process","termid":"GO:0022600"},{"relation_name":"is_a","term_name":"acid secretion","termid":"GO:0046717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"gastric acid secretion","synonyms":[{"name":"hydrochloric acid secretion","type":"narrow"}],"termid":"GO:0001696"}


id: GO:0031348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of defense response","termid":"GO:0031347"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"negatively_regulates","term_name":"defense response","termid":"GO:0006952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of defense response","synonyms":[{"name":"down regulation of defense response","type":"exact"},{"name":"down-regulation of defense response","type":"exact"},{"name":"downregulation of defense response","type":"exact"},{"name":"inhibition of defense response","type":"narrow"}],"termid":"GO:0031348"}


id: PBO:0084836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial pyrimidine nucleotide transporter; imports pyrimidine nucleoside triphosphates and exports pyrimidine nucleoside monophosphates; member of the mitochondrial carrier family","termid":"PBO:0084836"}


id: GO:0072072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the kidney stroma over time, from its formation to the mature structure. The kidney stroma is the mesenchyme of the mature kidney.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue development","termid":"GO:0061448"},{"relation_name":"is_a","term_name":"kidney mesenchyme development","termid":"GO:0072074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"kidney stroma development","termid":"GO:0072072"}


id: GO:1904992
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of adenylate cyclase-inhibiting dopamine receptor signaling pathway.","definition_xrefs":["GOC:kmv","GO_REF:0000058","PMID:26554819","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of dopamine receptor signaling pathway","termid":"GO:0060161"},{"relation_name":"is_a","term_name":"regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","termid":"GO:1904990"},{"relation_name":"positively_regulates","term_name":"adenylate cyclase-inhibiting dopamine receptor signaling pathway","termid":"GO:0007195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","synonyms":[{"name":"activation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","type":"narrow"},{"name":"activation of dopamine receptor, adenylate cyclase inhibiting pathway","type":"narrow"},{"name":"activation of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"narrow"},{"name":"activation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"activation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"narrow"},{"name":"positive regulation of dopamine receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"positive regulation of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"positive regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"positive regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"exact"},{"name":"up regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","type":"exact"},{"name":"up regulation of dopamine receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"up regulation of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"up regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"up regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"exact"},{"name":"up-regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","type":"exact"},{"name":"up-regulation of dopamine receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"up-regulation of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"up-regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"up-regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"exact"},{"name":"upregulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","type":"exact"},{"name":"upregulation of dopamine receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"upregulation of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"upregulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"upregulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"exact"}],"termid":"GO:1904992"}


id: GO:0051516
data:
  {"annotated_genes":["SJAG_02392","SJAG_02169","SJAG_03581","SJAG_00514","SJAG_00244"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111208],"is_not":false,"summary":null,"term":"GO:0051516"},{"annotations":[90620,85895,91900],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"},{"annotations":[86756],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051517"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of unidimensional cell growth","termid":"GO:0051510"},{"relation_name":"regulates","term_name":"bipolar cell growth","termid":"GO:0042815"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00514":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_03581":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of bipolar cell growth","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0051516","terms_by_termid":{"GO:0051516":null,"GO:0051517":null,"GO:0051519":null}}


id: PBO:0047766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FOSL1 pseudogene 1","termid":"PBO:0047766"}


id: GO:0031690
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an adrenergic receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"adrenergic receptor binding","synonyms":[{"name":"adrenergic receptor ligand","type":"narrow"}],"termid":"GO:0031690"}


id: PBO:0064781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase, Mg2+/Mn2+ dependent 1B","termid":"PBO:0064781"}


id: PBO:0085621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in efficient MVB sorting of proteins to the vacuole; may function as an RSP5 adapter protein for MVB cargos; integral membrane protein localized to vacuolar intralumenal vesicles","termid":"PBO:0085621"}


id: GO:0035615
data:
  {"annotated_genes":["SJAG_01167","SJAG_04609","SJAG_03726","SJAG_02453","SJAG_04931","SJAG_00104","SJAG_02805","SJAG_04565","SJAG_01809","SJAG_00800","SJAG_00152","SJAG_00379","SJAG_00108"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84942,90231,92190,92334,95405,97216,104468,107647,107744,107806,108936,109166,115062],"is_not":false,"summary":null,"term":"GO:0035615"}]},"cv_name":"molecular_function","definition":"Bringing together a cargo protein with clathrin, responsible for the formation of endocytic vesicles.","definition_xrefs":["GOC:BHF","PMID:15728179"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cargo adaptor activity","termid":"GO:0140312"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00104":null,"SJAG_00108":null,"SJAG_00152":null,"SJAG_00379":null,"SJAG_00800":null,"SJAG_01167":null,"SJAG_01809":null,"SJAG_02453":null,"SJAG_02805":null,"SJAG_03726":null,"SJAG_04565":null,"SJAG_04609":null,"SJAG_04931":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0003674","GO:0030674","GO:0060090"],"is_obsolete":false,"name":"clathrin adaptor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"clathrin-associated adaptor activity","type":"exact"}],"termid":"GO:0035615","terms_by_termid":{"GO:0035615":null}}


id: PBO:0082679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the ESCRT-I complex; ESCRT-I is involved in ubiquitin-dependent sorting of proteins into the endosome; prevents polyubiquitination of the arrestin-related protein Rim8p, thereby directing its monoubiquitination by Rsp5p; homologous to the mouse and human Tsg101 tumor susceptibility gene; mutants exhibit a Class E Vps phenotype;","termid":"PBO:0082679"}


id: FYPO:0005803
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the movement of one or more proteins within the plasma membrane of the lateral part of the cell occurs more slowly than normal.","definition_xrefs":["PMID:25837586","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein movement within plasma membrane during vegetative growth","termid":"FYPO:0005800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased rate of protein movement within plasma membrane at cell side","synonyms":[{"name":"decreased rate of protein movement within plasma membrane at cell side during mitotic cell cycle","type":"related"},{"name":"decreased rate of protein movement within plasma membrane at cell side during vegetative growth","type":"exact"},{"name":"decreased rate of protein movement within plasma membrane at lateral part of cell","type":"exact"},{"name":"reduced rate of protein movement within plasma membrane at cell side","type":"exact"},{"name":"slow protein movement within plasma membrane at cell side","type":"exact"}],"termid":"FYPO:0005803"}


id: GO:1901019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of calcium ion transmembrane transporter activity.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of monoatomic ion transmembrane transporter activity","termid":"GO:0032412"},{"relation_name":"is_a","term_name":"regulation of calcium ion transmembrane transport","termid":"GO:1903169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"regulation of calcium ion transmembrane transporter activity","termid":"GO:1901019"}


id: PBO:0087859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator involved in maintenance of ion homeostasis; also involved in protection against DNA damage caused by bleomycin and other oxidants; contains a C-terminal leucine-rich repeat","termid":"PBO:0087859"}


id: GO:0016750
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a succinyl group to an oxygen atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"},{"relation_name":"is_a","term_name":"succinyltransferase activity","termid":"GO:0016748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"O-succinyltransferase activity","termid":"GO:0016750"}


id: GO:1901797
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction by p53 class mediator.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction by p53 class mediator","termid":"GO:1901796"},{"relation_name":"is_a","term_name":"negative regulation of intracellular signal transduction","termid":"GO:1902532"},{"relation_name":"negatively_regulates","term_name":"signal transduction by p53 class mediator","termid":"GO:0072331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of signal transduction by p53 class mediator","synonyms":[{"name":"down regulation of signal transduction by p53 class mediator","type":"exact"},{"name":"down-regulation of signal transduction by p53 class mediator","type":"exact"},{"name":"downregulation of signal transduction by p53 class mediator","type":"exact"},{"name":"inhibition of signal transduction by p53 class mediator","type":"narrow"}],"termid":"GO:1901797"}


id: PBO:0064082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylserine decarboxylase","termid":"PBO:0064082"}


id: PBO:0086706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; mCherry fusion protein localizes to the cytosol and nucleus","termid":"PBO:0086706"}


id: PBO:0086995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Reticulon protein; involved in nuclear pore assembly and maintenance of tubular ER morphology; promotes membrane curvature; regulates the ER asymmetry-induced inheritance block during ER stress; role in ER-derived peroxisomal biogenesis; interacts with Sec6p, Yip3p, and Sbh1p; less abundant than RTN1; member of RTNLA (reticulon-like A) subfamily; protein increases in abundance and relocalizes to plasma membrane upon DNA replication stress","termid":"PBO:0086995"}


id: PBO:0028384
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_silencing_at_centromere_inner_repeat","termid":"PBO:0028384"}


id: FYPO:0005176
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ferric-chelate reductase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal ferric-chelate reductase activity","termid":"FYPO:0001847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000707","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"increased ferric-chelate reductase activity","termid":"FYPO:0005176"}


id: GO:0072067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the early distal convoluted tubule over time, from its formation to the mature structure. The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron epithelium development","termid":"GO:0072009"},{"relation_name":"part_of","term_name":"distal convoluted tubule development","termid":"GO:0072025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"early distal convoluted tubule development","termid":"GO:0072067"}


id: GO:0160042
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the active transport of purine nucleotides across a membrane by a mechanism involving conformational change, where energy for active transport is derived from membrane potential if the solute is charged.","definition_xrefs":["PMID:27477609","PMID:18375752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide transmembrane transporter activity","termid":"GO:0015216"},{"relation_name":"is_a","term_name":"membrane potential driven uniporter activity","termid":"GO:0022810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"purine nucleotide uniporter activity","termid":"GO:0160042"}


id: PBO:0109104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF217 antisense RNA 1","termid":"PBO:0109104"}


id: PBO:0073534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing GRB2 like, endophilin B2","termid":"PBO:0073534"}


id: PBO:0088413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracellular leucine-rich repeat domain, receptor L domain-like Ecm33","termid":"PBO:0088413"}


id: GO:0099557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling between presynapse and postsynapse, mediated by transynaptic protein complexes, that modulates the synaptic transmission properties of the synapse.","definition_xrefs":["GOC:dos","PMID:19029886"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans-synaptic signaling by trans-synaptic complex","termid":"GO:0099545"},{"relation_name":"is_a","term_name":"trans-synaptic signaling, modulating synaptic transmission","termid":"GO:0099550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission","termid":"GO:0099557"}


id: PBO:0067628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 800, pseudogene","termid":"PBO:0067628"}


id: PBO:0108944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Spi-C transcription factor pseudogene 1","termid":"PBO:0108944"}


id: PR:Q9UUD2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- prp38 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUD2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor 38 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19C2.08","synonyms":[{"name":"Spom972h-prp38","type":"exact"}],"termid":"PR:Q9UUD2"}


id: PBO:0050416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HNRNPDL pseudogene 5","termid":"PBO:0050416"}


id: PBO:0059084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MON1 homolog B, secretory trafficking associated","termid":"PBO:0059084"}


id: PBO:0076638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein like 1","termid":"PBO:0076638"}


id: FYPO:0006658
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of acid phosphatase activity is decreased during a cellular response to phosphate starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased acid phosphatase activity","termid":"FYPO:0001045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000661","FYPO:0001985","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"decreased acid phosphatase activity during cellular response to phosphate starvation","synonyms":[{"name":"reduced acid phosphatase activity during cellular response to phosphate starvation","type":"exact"}],"termid":"FYPO:0006658"}


id: PBO:0080809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-ray repair cross complementing 5","termid":"PBO:0080809"}


id: PBO:0072388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 14","termid":"PBO:0072388"}


id: FYPO:0006266
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size of the fungal-type vacuole is normal (i.e. indistinguishable from wild type)..","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vacuolar morphology during vegetative growth","termid":"FYPO:0004247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal vacuole size during vegetative growth","synonyms":[{"name":"normal vacuolar size during vegetative growth","type":"exact"},{"name":"normal vacuole size during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006266"}


id: SO:0002322
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A stop_gained (SO:0001587) variant that allows the transcript to escape nonsense-mediated decay (NMD).","definition_xrefs":["GenCC:AR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stop_gained","termid":"SO:0001587"},{"relation_name":"is_a","term_name":"NMD_escaping_variant","termid":"SO:0002320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stop_gained_NMD_escaping","synonyms":[{"name":"stop gained variant-nonsense-mediated decay escaping","type":"exact"},{"name":"stop gained-NMD escaping","type":"exact"}],"termid":"SO:0002322"}


id: MOD:01132
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:01165. Remap to MOD:01165.","definition_xrefs":["DeltaMass:0"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01132 5'phos Adenosinyl (obsolete MOD:01132)","termid":"MOD:01132"}


id: GO:0042397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of phosphagen, any of a group of guanidine phosphates that occur in muscle and can be used to regenerate ATP from ADP during muscular contraction.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphagen metabolic process","termid":"GO:0006599"},{"relation_name":"is_a","term_name":"cellular modified amino acid catabolic process","termid":"GO:0042219"},{"relation_name":"is_a","term_name":"organophosphate catabolic process","termid":"GO:0046434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phosphagen catabolic process","synonyms":[{"name":"phosphagen breakdown","type":"exact"},{"name":"phosphagen catabolism","type":"exact"},{"name":"phosphagen degradation","type":"exact"}],"termid":"GO:0042397"}


id: PATO:0002059
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"The specific wavelength of light emitted by a fluorescent molecule, such as a labelled probe, upon absorption of light at the (higher) excitation wavelength.","definition_xrefs":["web:http://www.expertglossary.com/"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radiation emitting quality","termid":"PATO:0001299"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"emmision wavelength","termid":"PATO:0002059"}


id: GO:0046110
data:
  {"annotated_genes":["SJAG_04297"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009115"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleobase metabolic process","termid":"GO:0006144"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04297":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"xanthine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"xanthine metabolism","type":"exact"}],"termid":"GO:0046110","terms_by_termid":{"GO:0009115":null}}


id: PBO:0073648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"salt inducible kinase 2","termid":"PBO:0073648"}


id: PR:Q09750
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pst1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09750"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired amphipathic helix protein pst1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12C2.10c","synonyms":[{"name":"SIN3 homolog 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pst1","type":"exact"}],"termid":"PR:Q09750"}


id: GO:0005573
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete telomerase RNA (obsolete GO:0005573)","synonyms":[{"name":"telomerase RNA","type":"exact"}],"termid":"GO:0005573"}


id: PBO:0049506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 13","termid":"PBO:0049506"}


id: GO:0021977
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord.","definition_xrefs":["GOC:cls","GOC:dph","GOC:jid","GO_REF:0000021","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system projection neuron axonogenesis","termid":"GO:0021952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tectospinal tract morphogenesis","termid":"GO:0021977"}


id: PBO:0002374
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rothmund-Thomsom syndrome","termid":"PBO:0002374"}


id: PBO:0002031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp7 (predicted)","termid":"PBO:0002031"}


id: SO:1001283
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A stop codon signal for a UAA stop codon redefinition.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stop_codon_signal","termid":"SO:1001288"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UAA_stop_codon_signal","synonyms":[{"name":"UAA stop codon signal","type":"exact"}],"termid":"SO:1001283"}


id: SO:0002012
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A codon variant that changes at least one base of the canonical start codon.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"initiator_codon_variant","termid":"SO:0001582"},{"relation_name":"is_a","term_name":"nonsynonymous_variant","termid":"SO:0001992"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"start_lost","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html","http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"Jannovar:start_lost","type":"exact"},{"name":"VEP:start_lost","type":"exact"},{"name":"snpEff:START_LOST","type":"exact"}],"termid":"SO:0002012"}


id: GO:0051729
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a germline cell switches cell cycle mode from mitotic to meiotic division.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle switching, mitotic to meiotic cell cycle","termid":"GO:0051728"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"germline cell cycle switching, mitotic to meiotic cell cycle","synonyms":[{"name":"germline cell cycle switching, mitosis to meiosis","type":"narrow"},{"name":"germline conversion to meiosis","type":"narrow"},{"name":"germline conversion to meiotic cell cycle","type":"exact"},{"name":"germline entry into meiosis","type":"narrow"},{"name":"germline entry into meiotic cell cycle","type":"exact"},{"name":"germline initiation of meiosis","type":"narrow"},{"name":"germline initiation of meiotic cell cycle","type":"exact"},{"name":"germline meiotic entry","type":"narrow"}],"termid":"GO:0051729"}


id: PBO:0048508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth differentiation factor 9","termid":"PBO:0048508"}


id: GO:0033638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism modulates the host's tolerance to high temperatures, above the optimal temperature for that organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:17425405","GOC:pamgo_curators","PMID:35350854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by symbiont of host response to abiotic stimulus","termid":"GO:0033635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation by symbiont of host heat acclimation","synonyms":[{"name":"modulation by symbiont of host response to heat","type":"related"},{"name":"response to heat shock","type":"related"}],"termid":"GO:0033638"}


id: PBO:0113257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peripheral peroxisomal membrane protein; required for Vps1-dependent peroxisome fission but not Dnm1-dependent fission; functions to control peroxisome size and number; interacts with Vps1p and Pex25p; accumulates at peroxisomal membrane constrictions; PEX27 has a paralog, PEX25, that arose from the whole genome duplication","termid":"PBO:0113257"}


id: PBO:0063152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pro-apoptotic WT1 regulator","termid":"PBO:0063152"}


id: GO:0050996
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of lipid metabolic process","termid":"GO:0045834"},{"relation_name":"is_a","term_name":"regulation of lipid catabolic process","termid":"GO:0050994"},{"relation_name":"positively_regulates","term_name":"lipid catabolic process","termid":"GO:0016042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of lipid catabolic process","synonyms":[{"name":"activation of lipid catabolic process","type":"narrow"},{"name":"positive regulation of lipid breakdown","type":"exact"},{"name":"positive regulation of lipid catabolism","type":"exact"},{"name":"positive regulation of lipid degradation","type":"exact"},{"name":"stimulation of lipid catabolic process","type":"narrow"},{"name":"up regulation of lipid catabolic process","type":"exact"},{"name":"up-regulation of lipid catabolic process","type":"exact"},{"name":"upregulation of lipid catabolic process","type":"exact"}],"termid":"GO:0050996"}


id: PBO:0035828
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_eMTOC","termid":"PBO:0035828"}


id: PBO:0086402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative FAD transporter, similar to Flc1p and Flc2p; localized to the ER; FLC3 has a paralog, FLC1, that arose from the whole genome duplication","termid":"PBO:0086402"}


id: FYPO:0005732
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which arginase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal arginase activity","termid":"FYPO:0005730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0001985","FYPO:0000707","FYPO:0000654"],"is_obsolete":false,"name":"abolished arginase activity","synonyms":[{"name":"arginase activity abolished","type":"exact"}],"termid":"FYPO:0005732"}


id: PBO:0055047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2462","termid":"PBO:0055047"}


id: PBO:0011415
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-activated_by","termid":"PBO:0011415"}


id: GO:0042016
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with interleukin-20 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"interleukin-20 receptor activity","synonyms":[{"name":"IL-20 receptor activity","type":"exact"},{"name":"IL-20R","type":"exact"}],"termid":"GO:0042016"}


id: PBO:0070896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 4","termid":"PBO:0070896"}


id: PBO:0074210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 41 member 3","termid":"PBO:0074210"}


id: PBO:0043284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain family 4 member G pseudogene 1","termid":"PBO:0043284"}


id: PBO:0060005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 25","termid":"PBO:0060005"}


id: GO:1903477
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any actin filament bundle assembly that is involved in mitotic actomyosin contractile ring assembly.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle","GO_REF:0000060","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actomyosin contractile ring actin filament bundle assembly","termid":"GO:0071519"},{"relation_name":"is_a","term_name":"mitotic actomyosin contractile ring assembly actin filament organization","termid":"GO:1903479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0000281"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0000281","GO:0044085","GO:0007010","GO:0007049","GO:0030036","GO:0008150"],"is_obsolete":false,"name":"mitotic contractile ring actin filament bundle assembly","synonyms":[{"name":"actin filament bundle assembly involved in mitotic actomyosin contractile ring assembly","type":"exact"}],"termid":"GO:1903477"}


id: GO:0015453
data:
  {"annotated_genes":["SJAG_01077","SJAG_MIT13","SJAG_MIT04","SJAG_01355","SJAG_07006","SJAG_MIT03","SJAG_03490","SJAG_02504","SJAG_07007","SJAG_05629","SJAG_MIT20","SJAG_01490","SJAG_00601","SJAG_00976","SJAG_02646","SJAG_04152","SJAG_03337","SJAG_01190","SJAG_00755"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84236,110386,115260,115233,115261,85257,87974,110813,115206,104414,111621,112997,115232],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004129"},{"annotations":[109009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008137"},{"annotations":[100194,109559,113867,114336,100607,115237,104090],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008121"}]},"cv_name":"molecular_function","definition":"Primary active transport of a solute across a membrane, driven by exothermic flow of electrons from a reduced substrate to an oxidized substrate. Primary active transport is catalysis of the transport of a solute across a membrane, up the solute's concentration gradient, by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction and is driven by a primary energy source.","definition_xrefs":["TC:3.D.-.-.-","ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary active transmembrane transporter activity","termid":"GO:0015399"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00601":null,"SJAG_00755":null,"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_01490":null,"SJAG_02504":null,"SJAG_02646":null,"SJAG_03337":null,"SJAG_03490":null,"SJAG_04152":null,"SJAG_05629":null,"SJAG_07006":null,"SJAG_07007":null,"SJAG_MIT03":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"oxidoreduction-driven active transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["TC:3.D"],"synonyms":[{"name":"oxidoreduction-driven transporter","type":"exact"}],"termid":"GO:0015453","terms_by_termid":{"GO:0004129":null,"GO:0008121":null,"GO:0008137":null}}


id: GO:0035051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell that will form part of the cardiac organ of an individual.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"heart development","termid":"GO:0007507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiocyte differentiation","synonyms":[{"name":"cardiac cell differentiation","type":"exact"},{"name":"heart cell differentiation","type":"exact"}],"termid":"GO:0035051"}


id: MOD:01724
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an N'-hydrogen atom of a histidine residue with the Proteome Sciences TMT6plex-126 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent N-acylated residue","termid":"MOD:01717"},{"relation_name":"is_a","term_name":"TMT6plex-126 reporter+balance reagent acylated residue","termid":"MOD:01720"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-126 reporter+balance reagent N'-acylated histidine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01724"}


id: PBO:0051508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IKBKE antisense RNA 1","termid":"PBO:0051508"}


id: PBO:0000731
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-hydroxybutyricaciduria","termid":"PBO:0000731"}


id: GO:0110054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of actin filament annealing, i.e. the end-to-end joining of existing actin filaments.","definition_xrefs":["PMID:10585915","GOC:mah","PMID:15743909","PMID:19244341","PMID:11575927"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of actin filament organization","termid":"GO:0110053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0030036","GO:0008150","GO:0007010"],"is_obsolete":false,"name":"regulation of actin filament annealing","termid":"GO:0110054"}


id: PBO:0026993
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_chloroacetaldehyde","termid":"PBO:0026993"}


id: PR:Q9P7H1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tyrosine-protein phosphatase Clp1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PomBase:MAH","PMID:11683392"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosine-protein phosphatase Clp1","termid":"PR:000027623"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine-protein phosphatase Clp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1782.09c","secondary_identifiers":["PR:000027624","UniProtKB:Q9P7H1"],"synonyms":[{"name":"CDC fourteen-like phosphatase 1","type":"exact"},{"name":"CLP1","type":"related"},{"name":"FLP1","type":"related"},{"name":"SPAC1782.09C","type":"related"},{"name":"Spom972h-clp1","type":"exact"},{"name":"tyrosine-protein phosphatase CDC14 homolog","type":"exact"}],"termid":"PR:Q9P7H1"}


id: PBO:0035745
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cytoplasmic_microtubules_nucleated_from_eMTOC_absent_from_cell","termid":"PBO:0035745"}


id: PBO:0004020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MADS-box transcription factor Mbx1","termid":"PBO:0004020"}


id: PBO:0086640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; YDR476C is not an essential gene","termid":"PBO:0086640"}


id: GO:0001765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a membrane raft, a small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalizes cellular processes.","definition_xrefs":["PMID:12648772","PMID:16645198","PMID:12803918"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane raft organization","termid":"GO:0031579"},{"relation_name":"is_a","term_name":"membrane assembly","termid":"GO:0071709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"membrane raft assembly","synonyms":[{"name":"lipid raft assembly","type":"exact"},{"name":"lipid raft formation","type":"related"},{"name":"membrane raft formation","type":"related"}],"termid":"GO:0001765"}


id: PBO:0074601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 11B","termid":"PBO:0074601"}


id: GO:1900580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (17Z)-protosta-17(20),24-dien-3beta-ol.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid catabolic process","termid":"GO:0006706"},{"relation_name":"is_a","term_name":"triterpenoid catabolic process","termid":"GO:0016105"},{"relation_name":"is_a","term_name":"alcohol catabolic process","termid":"GO:0046164"},{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"(17Z)-protosta-17(20),24-dien-3beta-ol metabolic process","termid":"GO:1900579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044248","GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"(17Z)-protosta-17(20),24-dien-3beta-ol catabolic process","synonyms":[{"name":"(17Z)-protosta-17(20),24-dien-3beta-ol breakdown","type":"exact"},{"name":"(17Z)-protosta-17(20),24-dien-3beta-ol catabolism","type":"exact"},{"name":"(17Z)-protosta-17(20),24-dien-3beta-ol degradation","type":"exact"}],"termid":"GO:1900580"}


id: PBO:0011092
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PhytoCheletin Synthase","termid":"PBO:0011092"}


id: GO:0102834
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:1-2-16:0-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:2-2-16:0-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz","PMID:7948918","PMID:8066133"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:1-2-16:0-monogalactosyldiacylglycerol acyl-lipid omega-6 desaturase activity (obsolete GO:0102834)","termid":"GO:0102834"}


id: PR:O59679
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A rho guanine nucleotide exchange factor 38 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho guanine nucleotide exchange factor gef3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.17","secondary_identifiers":["UniProtKB:O59679"],"synonyms":[{"name":"Spom972h-ARHGEF38","type":"exact"}],"termid":"PR:O59679"}


id: GO:0032725
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of granulocyte macrophage colony-stimulating factor production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of granulocyte macrophage colony-stimulating factor production","termid":"GO:0032645"},{"relation_name":"is_a","term_name":"positive regulation of protein metabolic process","termid":"GO:0051247"},{"relation_name":"positively_regulates","term_name":"granulocyte macrophage colony-stimulating factor production","termid":"GO:0032604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of granulocyte macrophage colony-stimulating factor production","secondary_identifiers":["GO:0045425"],"synonyms":[{"name":"activation of granulocyte macrophage colony-stimulating factor production","type":"narrow"},{"name":"positive regulation of GM-CSF production","type":"exact"},{"name":"positive regulation of granulocyte macrophage colony stimulating factor production","type":"exact"},{"name":"positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process","type":"narrow"},{"name":"stimulation of granulocyte macrophage colony-stimulating factor production","type":"narrow"},{"name":"up regulation of granulocyte macrophage colony-stimulating factor production","type":"exact"},{"name":"up-regulation of granulocyte macrophage colony-stimulating factor production","type":"exact"},{"name":"upregulation of granulocyte macrophage colony-stimulating factor production","type":"exact"}],"termid":"GO:0032725"}


id: GO:0045963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving dopamine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dopamine metabolic process","termid":"GO:0042053"},{"relation_name":"is_a","term_name":"negative regulation of catecholamine metabolic process","termid":"GO:0045914"},{"relation_name":"negatively_regulates","term_name":"dopamine metabolic process","termid":"GO:0042417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dopamine metabolic process","synonyms":[{"name":"down regulation of dopamine metabolic process","type":"exact"},{"name":"down-regulation of dopamine metabolic process","type":"exact"},{"name":"downregulation of dopamine metabolic process","type":"exact"},{"name":"inhibition of dopamine metabolic process","type":"narrow"},{"name":"negative regulation of dopamine metabolism","type":"exact"}],"termid":"GO:0045963"}


id: GO:0106303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving mannogen, a mannose-containing polysaccharide that is a major energy reserve in Leishmania.","definition_xrefs":["PMID:16766650","PMID:31513773","PMID:31662278","PMID:12902334"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide metabolic process","termid":"GO:0005976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"mannogen metabolic process","synonyms":[{"name":"beta-1,2-mannan metabolic process","type":"related"},{"name":"mannogen metabolism","type":"related"}],"termid":"GO:0106303"}


id: GO:0102177
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 24-methylenelophenol + O2 + NADH + H+ = 4alpha-hydroxymethyl-ergosta-7,24(241)-dien-3beta-ol + NAD + H2O.","definition_xrefs":["RHEA:58872","PMID:11707264","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"24-methylenelophenol methyl oxidase activity","secondary_identifiers":["EC:1.14.18.11","MetaCyc:RXN-11930"],"termid":"GO:0102177"}


id: PBO:0005276
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.2.1.2","termid":"PBO:0005276"}


id: GO:0046861
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a glyoxysome.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxisomal membrane","termid":"GO:0005778"},{"relation_name":"part_of","term_name":"glyoxysome","termid":"GO:0009514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005777"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005777","GO:0005575"],"is_obsolete":false,"name":"glyoxysomal membrane","synonyms":[{"name":"glyoxysome membrane","type":"exact"}],"termid":"GO:0046861"}


id: PBO:0046474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELKS/RAB6-interacting/CAST family member 2","termid":"PBO:0046474"}


id: PBO:0066468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication factor C subunit 5","termid":"PBO:0066468"}


id: PBO:0001640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretory pathway protein Sec39 (predicted)","termid":"PBO:0001640"}


id: GO:0052016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of glucan molecules within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete catabolism by symbiont of host glucan (obsolete GO:0052016)","synonyms":[{"name":"catabolism by organism of host glucan","type":"exact"}],"termid":"GO:0052016"}


id: FYPO:0007139
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortical nodes is abolished during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to medial cortical node","termid":"FYPO:0003919"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to medial cortical node during mitotic interphase","synonyms":[{"name":"abolished protein localisation to medial cortical node during mitotic interphase","type":"exact"},{"name":"abolished protein localization to cortical medial dot during mitotic interphase","type":"exact"},{"name":"abolished protein localization to cytokinetic nodes during mitotic interphase","type":"related"},{"name":"abolished protein localization to medial cortical node during interphase during vegetative growth","type":"exact"},{"name":"abolished protein localization to medial cortical node during interphase of mitotic cell cycle","type":"exact"},{"name":"abolished protein localization to medial cortical nodes during mitotic interphase","type":"exact"},{"name":"abolished protein recruitment to medial cortical node during mitotic interphase","type":"related"},{"name":"protein localization to medial cortical node abolished during mitotic interphase","type":"exact"}],"termid":"FYPO:0007139"}


id: GO:0005611
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A laminin complex composed of alpha3, beta1 and gamma1 polypeptide chains.","definition_xrefs":["PMID:10842354","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminin complex","termid":"GO:0043256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"laminin-6 complex","synonyms":[{"name":"laminin-311 complex","type":"exact"},{"name":"laminin-6A complex","type":"exact"}],"termid":"GO:0005611"}


id: PBO:0038374
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-related_via_exposure_to","termid":"PBO:0038374"}


id: PBO:0071145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L22 pseudogene 8","termid":"PBO:0071145"}


id: PBO:0002224
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.5.4.5","termid":"PBO:0002224"}


id: PR:O43025
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC354.11c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O43025"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C354.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC354.11c","synonyms":[{"name":"Spom972h-SPBC354.11c","type":"exact"}],"termid":"PR:O43025"}


id: FYPO:0005979
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin filament bundle organization is abnormal. The process normally results in the assembly, arrangement of constituent parts, or disassembly of an actin filament bundle. Actin filament bundles are assemblies of actin filaments organized along a single axis.","definition_xrefs":["GO:0061572","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin filament organization during vegetative growth","termid":"FYPO:0000727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0004803"],"is_obsolete":false,"name":"abnormal actin filament bundle organization","synonyms":[{"name":"abnormal actin filament bundle organisation during vegetative growth","type":"exact"},{"name":"abnormal actin filament bundle organization during mitotic cell cycle","type":"related"},{"name":"abnormal actin filament bundle organization during vegetative growth","type":"exact"}],"termid":"FYPO:0005979"}


id: GO:0046844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Establishment of the micropyle, a single cone-shaped specialization of the chorion that allows sperm entry into the egg prior to fertilization.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"egg chorion assembly","termid":"GO:0007306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"chorion micropyle formation","termid":"GO:0046844"}


id: PBO:0076782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tec protein tyrosine kinase","termid":"PBO:0076782"}


id: PBO:0055971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LRRFIP2 pseudogene 1","termid":"PBO:0055971"}


id: GO:1905878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The disaggregation of an invadopodium into its constituent components.","definition_xrefs":["GOC:TermGenie","GO_REF:0000079","PMID:15684033"],"gene_count":0,"genotype_count":0,"name":"obsolete invadopodium disassembly (obsolete GO:1905878)","termid":"GO:1905878"}


id: PBO:0047192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 209 member B","termid":"PBO:0047192"}


id: PBO:0056155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"macrophage enriched lincRNA repressor of IFN-gamma signaling","termid":"PBO:0056155"}


id: PBO:0057511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 629","termid":"PBO:0057511"}


id: GO:0009678
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: diphosphate + H+(in) + H2O = 2 H+(out) + 2 phosphate.","definition_xrefs":["Wikipedia:Proton-pumping_pyrophosphatase","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"primary active transmembrane transporter activity","termid":"GO:0015399"},{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"diphosphate hydrolysis-driven proton transmembrane transporter activity","secondary_identifiers":["RHEA:13973","TC:3.A.10","MetaCyc:TRANS-RXN-370","EC:7.1.3.1"],"synonyms":[{"name":"H+-exporting diphosphatase","type":"related"},{"name":"PP(i) hydrolysis-driven proton transmembrane transporter activity","type":"exact"},{"name":"hydrogen-translocating pyrophosphatase activity","type":"related"},{"name":"proton-pumping diphosphatase","type":"related"},{"name":"proton-pumping pyrophosphatase","type":"related"},{"name":"proton-translocating pyrophosphatase activity","type":"exact"},{"name":"pyrophosphate hydrolysis-driven proton transmembrane transporter activity","type":"related"}],"termid":"GO:0009678"}


id: PBO:0041502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C12orf75 antisense RNA 1","termid":"PBO:0041502"}


id: FYPO:0002983
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of serine residues in one or more specific proteins, or of specific protein sites, does not occur during a cellular response to DNA damage.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete abolished protein serine phosphorylation during cellular response to DNA damage (obsolete FYPO:0002983)","synonyms":[{"name":"abolished protein serine phosphorylation during cellular response to DNA damage during mitotic cell cycle","type":"related"},{"name":"abolished protein serine phosphorylation during cellular response to DNA damage during vegetative growth","type":"exact"},{"name":"protein serine phosphorylation abolished during cellular response to DNA damage","type":"exact"}],"termid":"FYPO:0002983"}


id: PBO:0044522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DAB adaptor protein 2","termid":"PBO:0044522"}


id: GO:0042389
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the introduction of an omega-3 double bond into the fatty acid hydrocarbon chain.","definition_xrefs":["GOC:jl","PMID:9037020"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"omega-3 fatty acid desaturase activity","termid":"GO:0042389"}


id: PR:Q09840
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- aah2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23D3.14c","synonyms":[{"name":"1,4-alpha-D-glucan glucanohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-aah2","type":"exact"}],"termid":"PR:Q09840"}


id: GO:0032141
data:
  {"annotated_genes":["SJAG_00634"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94257],"is_not":false,"summary":null,"term":"GO:0032141"}]},"cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing a single cytosine insertion or a deletion that results in an unpaired cytosine.","definition_xrefs":["GOC:mah","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single base insertion or deletion binding","termid":"GO:0032138"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0003677","GO:0005488"],"is_obsolete":false,"name":"single cytosine insertion binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032141","terms_by_termid":{"GO:0032141":null}}


id: GO:0032374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of cholesterol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sterol transport","termid":"GO:0032371"},{"relation_name":"regulates","term_name":"cholesterol transport","termid":"GO:0030301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of cholesterol transport","termid":"GO:0032374"}


id: PBO:0074273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"schlafen family member 14","termid":"PBO:0074273"}


id: PR:O74327
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- avt5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74327"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar amino acid transporter 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1685.07c","synonyms":[{"name":"Spom972h-avt5","type":"exact"}],"termid":"PR:O74327"}


id: GO:0045795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases cell volume.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell volume homeostasis","termid":"GO:0006884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell volume","termid":"GO:0045795"}


id: GO:0002859
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of natural killer cell mediated cytotoxicity directed against tumor cell target.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of natural killer cell mediated immune response to tumor cell","termid":"GO:0002856"},{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated cytotoxicity directed against tumor cell target","termid":"GO:0002858"},{"relation_name":"is_a","term_name":"negative regulation of natural killer cell mediated cytotoxicity","termid":"GO:0045953"},{"relation_name":"negatively_regulates","term_name":"natural killer cell mediated cytotoxicity directed against tumor cell target","termid":"GO:0002420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of natural killer cell mediated cytotoxicity directed against tumor cell target","synonyms":[{"name":"down regulation of natural killer cell mediated cytotoxicity directed against tumor cell target","type":"exact"},{"name":"down-regulation of natural killer cell mediated cytotoxicity directed against tumor cell target","type":"exact"},{"name":"downregulation of natural killer cell mediated cytotoxicity directed against tumor cell target","type":"exact"},{"name":"inhibition of natural killer cell mediated cytotoxicity directed against tumor cell target","type":"narrow"}],"termid":"GO:0002859"}


id: PBO:0026862
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_chromatin_silencing_at_centromere","termid":"PBO:0026862"}


id: GO:0016655
data:
  {"annotated_genes":["SJAG_02697","SJAG_03476","SJAG_04152","SJAG_01539"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93057],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003955"},{"annotations":[109009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008137"},{"annotations":[109010,92786],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050136"},{"annotations":[110859],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003960"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a quinone or a similar acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H","termid":"GO:0016651"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01539":null,"SJAG_02697":null,"SJAG_03476":null,"SJAG_04152":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.6.5.-"],"synonyms":[{"name":"oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor","type":"related"}],"termid":"GO:0016655","terms_by_termid":{"GO:0003955":null,"GO:0003960":null,"GO:0008137":null,"GO:0050136":null}}


id: PBO:0070646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 17","termid":"PBO:0070646"}


id: PBO:0042765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 57 like 1 pseudogene 1","termid":"PBO:0042765"}


id: FYPO:0006469
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mature non-coding RNA (ncRNA) measured in a cell is normal (i.e. indistinguishable from wild type). Total ncRNA or a specific ncRNA may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal mature ncRNA level","synonyms":[{"name":"normal mature ncRNA accumulation","type":"related"},{"name":"normal mature ncRNA level during mitotic cell cycle","type":"related"},{"name":"normal mature ncRNA level during vegetative growth","type":"exact"},{"name":"normal mature ncRNA transcript level","type":"exact"},{"name":"normal mature non-coding RNA level","type":"exact"},{"name":"normal ncRNA level","type":"broad"}],"termid":"FYPO:0006469"}


id: PBO:0064032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 66","termid":"PBO:0064032"}


id: GO:0002731
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of dendritic cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte mediated immunity","termid":"GO:0002704"},{"relation_name":"is_a","term_name":"negative regulation of cytokine production involved in immune response","termid":"GO:0002719"},{"relation_name":"is_a","term_name":"regulation of dendritic cell cytokine production","termid":"GO:0002730"},{"relation_name":"negatively_regulates","term_name":"dendritic cell cytokine production","termid":"GO:0002371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of dendritic cell cytokine production","synonyms":[{"name":"down regulation of dendritic cell cytokine production","type":"exact"},{"name":"down-regulation of dendritic cell cytokine production","type":"exact"},{"name":"downregulation of dendritic cell cytokine production","type":"exact"},{"name":"inhibition of dendritic cell cytokine production","type":"narrow"}],"termid":"GO:0002731"}


id: PBO:0034541
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_iron-sulfur_cluster_binding","termid":"PBO:0034541"}


id: PBO:0013003
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"curator_email","termid":"PBO:0013003"}


id: PATO:0001395
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A diploidy quality inhering in a bearer in by virtue of belonging in a species whose one of the sexes has haploid cells and the other has diploid cells.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Haplodiploid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diploid","termid":"PATO:0001394"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"haplodiploid","termid":"PATO:0001395"}


id: PBO:0086048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function may be involved in glutathione metabolism; function suggested by computational analysis of large-scale protein-protein interaction data; N- and C-terminal fusion proteins localize to the cell periphery","termid":"PBO:0086048"}


id: PBO:0055455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2887","termid":"PBO:0055455"}


id: PR:P36601
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA repair protein RAD51 homolog 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rhp51 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC644.14c","secondary_identifiers":["UniProtKB:P36601"],"synonyms":[{"name":"RAD51 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPAC644.14c","type":"related"},{"name":"Spom972h-RAD51","type":"exact"},{"name":"rad51","type":"related"}],"termid":"PR:P36601"}


id: GO:0039690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A viral genome replication process where the template genome is positive stranded, single stranded RNA ((+)ssRNA). Replication of the positive strand leads to dsRNA formation, which in turn is transcribed into positive single stranded RNA.","definition_xrefs":["GOC:bf","VZ:1116","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral RNA genome replication","termid":"GO:0039694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive stranded viral RNA replication","synonyms":[{"name":"ss(+) viral RNA replication","type":"related"}],"termid":"GO:0039690"}


id: PBO:0090121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial protease Sdd3","termid":"PBO:0090121"}


id: FYPO:0001818
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of phosphoribosylformylglycinamidine cyclo-ligase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000661","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"abnormal phosphoribosylformylglycinamidine cyclo-ligase activity","synonyms":[{"name":"abnormal AIR synthase activity","type":"exact"},{"name":"abnormal AIR synthetase activity","type":"exact"}],"termid":"FYPO:0001818"}


id: PBO:0077359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 98","termid":"PBO:0077359"}


id: GO:0097730
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cilium which may have a variable array of axonemal microtubules but does not contain molecular motors.","definition_xrefs":["PMID:22118931","PMID:17009929","PMID:20144998","GOC:kmv","GOC:cilia","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"non-motile cilium","secondary_identifiers":["GO:0031513"],"synonyms":[{"name":"immotile cilium","type":"exact"},{"name":"immotile primary cilium","type":"related"},{"name":"nonmotile cilium","type":"exact"},{"name":"nonmotile primary cilia","type":"related"},{"name":"nonmotile primary cilium","type":"related"},{"name":"sensory cilium","type":"related"}],"termid":"GO:0097730"}


