# terms

id: GO:0019085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The first phase of viral transcription that occurs after entry of the virus into the host cell, but prior to viral genome replication. It involves the transcription of genes for non-structural proteins, and for lytic viruses, the early gene products are involved in establishing control over the host cell.","definition_xrefs":["GOC:bf","GOC:jl","GOC:jh2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral transcription","termid":"GO:0019083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"early viral transcription","synonyms":[{"name":"immediate early viral mRNA transcription","type":"related"}],"termid":"GO:0019085"}


id: PBO:0109055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat protein Ank1","termid":"PBO:0109055"}


id: GO:0000137
data:
  {"annotated_genes":["SJAG_04095","SJAG_03555","SJAG_04112","SJAG_01276","SJAG_00816","SJAG_04770","SJAG_01025"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[92104,113140],"is_not":false,"summary":null,"term":"GO:0000137"},{"annotations":[108847],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000136"},{"annotations":[114219,101060,93956,83540],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140497"}]},"cv_name":"cellular_component","definition":"The Golgi cisterna closest to the endoplasmic reticulum; the first processing compartment through which proteins pass after export from the ER.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi cisterna","termid":"GO:0031985"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00816":null,"SJAG_01025":null,"SJAG_01276":null,"SJAG_03555":null,"SJAG_04095":null,"SJAG_04112":null,"SJAG_04770":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005794"}],"interesting_parent_ids":["GO:0005794","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"Golgi cis cisterna","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Golgi apparatus cis cisterna","type":"exact"}],"termid":"GO:0000137","terms_by_termid":{"GO:0000136":null,"GO:0000137":null,"GO:0140497":null}}


id: PBO:0057933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR3659 host gene","termid":"PBO:0057933"}


id: GO:1990709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that results in the assembly, arrangement of constituent parts, or disassembly of a presynaptic active zone.","definition_xrefs":["PMID:17068967","PMID:16865347","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"},{"relation_name":"part_of","term_name":"synapse organization","termid":"GO:0050808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"presynaptic active zone organization","synonyms":[{"name":"presynaptic active zone organisation","type":"exact"}],"termid":"GO:1990709"}


id: PBO:0045198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJB8 antisense RNA 1","termid":"PBO:0045198"}


id: PBO:0011506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan, similar to a region of alpha-galactosidase, melibiase, possible pseudogene","termid":"PBO:0011506"}


id: PBO:0044371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cylicin 1","termid":"PBO:0044371"}


id: GO:2000056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of Wnt signaling pathway involved in digestive tract morphogenesis.","definition_xrefs":["GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of Wnt signaling pathway involved in digestive tract morphogenesis (obsolete GO:2000056)","synonyms":[{"name":"regulation of Wnt receptor signaling pathway involved in digestive tract morphogenesis","type":"exact"},{"name":"regulation of Wnt receptor signalling pathway involved in digestive tract morphogenesis","type":"exact"},{"name":"regulation of Wnt-activated signaling pathway involved in digestive tract morphogenesis","type":"related"}],"termid":"GO:2000056"}


id: GO:0071960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the association between sister chromatids of a replicated chromosome along the length of the centromeric region is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a mitotic cell cycle.","definition_xrefs":["GOC:mah","PMID:1708436"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of mitotic sister chromatid cohesion","termid":"GO:0034088"},{"relation_name":"part_of","term_name":"mitotic sister chromatid cohesion, centromeric","termid":"GO:0071962"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"maintenance of mitotic sister chromatid cohesion, centromeric","synonyms":[{"name":"maintenance of centromeric mitotic sister chromatin cohesion","type":"exact"},{"name":"maintenance of mitotic sister chromatin cohesion at centromere","type":"exact"},{"name":"maintenance of sister chromatin cohesion at centromere at mitosis","type":"exact"}],"termid":"GO:0071960"}


id: PATO:0000744
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000744 balance value (obsolete PATO:0000744)","termid":"PATO:0000744"}


id: GO:0052719
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of ester linkages immediately 5' to an apurinic/apyrimidinic (AP; also called abasic) site within a ribonucleic acid molecule by creating internal breaks, generating a single-strand break with 5'-ribose phosphate and 3'-hydroxyl ends.","definition_xrefs":["PMID:19401441"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA endonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140098","GO:0003824","GO:0016787","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"RNA-(apurinic or apyrimidinic site) endonuclease activity","synonyms":[{"name":"AP endoribonuclease activity","type":"exact"},{"name":"abasic endoribonuclease activity","type":"exact"},{"name":"apurinic endoribonuclease activity","type":"narrow"},{"name":"apyrimidinic endoribonuclease activity","type":"narrow"}],"termid":"GO:0052719"}


id: PBO:0038446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAR2 splicing factor","termid":"PBO:0038446"}


id: GO:0044207
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains aminoacylated initiator methionine tRNA, GTP, and initiation factor 2 (either eIF2 in eukaryotes, or IF2 in prokaryotes). In prokaryotes, fMet-tRNA (initiator) is used rather than Met-tRNA (initiator).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoprotein complex","termid":"GO:1990904"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"translation initiation ternary complex","synonyms":[{"name":"Met-tRNA/eIF2.GTP ternary complex","type":"narrow"},{"name":"translation initiation (ternary) complex","type":"exact"}],"termid":"GO:0044207"}


id: PBO:0002898
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.2.1.59","termid":"PBO:0002898"}


id: GO:0071358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a type III interferon stimulus. Interferon lambda is the only member of the type III interferon found so far.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to type III interferon","termid":"GO:0034342"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to type III interferon","synonyms":[{"name":"cellular response to interferon-lambda","type":"narrow"},{"name":"cellular response to type III IFN","type":"exact"}],"termid":"GO:0071358"}


id: PBO:0062345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily K member 4 pseudogene","termid":"PBO:0062345"}


id: PBO:0068296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 2 pseudogene 1","termid":"PBO:0068296"}


id: PBO:0043262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"claudin 20","termid":"PBO:0043262"}


id: PR:Q9HDU5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A galactose-1-phosphate uridylyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11943:SF0","PRO:DNx","OMA:SCHPO04141"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactose-1-phosphate uridylyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB2B2.10c","secondary_identifiers":["UniProtKB:Q9HDU5"],"synonyms":[{"name":"Spom972h-GALT","type":"exact"},{"name":"UDP-glucose--hexose-1-phosphate uridylyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"gal-1-P uridylyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HDU5"}


id: PBO:0062283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily J member 7 pseudogene","termid":"PBO:0062283"}


id: PBO:0003854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF and RSC complex subunit Ssr4","termid":"PBO:0003854"}


id: MOD:00755
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes an iodine atom of a residue for a hydrogen atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogen containing residue","termid":"MOD:00694"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodinated residue","synonyms":[{"name":"IRes","type":"exact"}],"termid":"MOD:00755"}


id: PBO:0030022
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_asymmetric_protein_localization_to_old_or_new_mitotic_spindle_pole_body","termid":"PBO:0030022"}


id: GO:0031147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one, also known as DIF-1, differentiation-inducing factor-1. DIF-1 is a secreted chlorinated molecule that controls cell fate during development of Dictyostelium cells.","definition_xrefs":["GOC:mah","PMID:10706822"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"cellular ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one metabolic process","synonyms":[{"name":"1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one metabolism","type":"exact"},{"name":"DIF-1 metabolic process","type":"exact"},{"name":"DIF-1 metabolism","type":"exact"}],"termid":"GO:0031147"}


id: GO:0008841
data:
  {"annotated_genes":["SJAG_00529"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88970],"is_not":false,"summary":null,"term":"GO:0008841"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + dihydropterate + L-glutamate = ADP + phosphate + dihydrofolate.","definition_xrefs":["EC:6.3.2.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00529":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"dihydrofolate synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:23584","MetaCyc:DIHYDROFOLATESYNTH-RXN"],"synonyms":[{"name":"7,8-dihydrofolate synthetase activity","type":"related"},{"name":"7,8-dihydropteroate:L-glutamate ligase (ADP) activity","type":"related"},{"name":"7,8-dihydropteroate:L-glutamate ligase (ADP-forming)","type":"related"},{"name":"DHFS activity","type":"related"},{"name":"FHFS activity","type":"related"},{"name":"FHFS/FPGS activity","type":"related"},{"name":"H(2)-folate synthetase activity","type":"related"},{"name":"H2-folate synthetase activity","type":"related"},{"name":"dihydrofolate synthetase activity","type":"related"},{"name":"dihydrofolate synthetase-folylpolyglutamate synthetase activity","type":"related"},{"name":"dihydropteroate:L-glutamate ligase (ADP-forming) activity","type":"related"},{"name":"folylpoly-(gamma-glutamate) synthetase-dihydrofolate synthase activity","type":"related"}],"termid":"GO:0008841","terms_by_termid":{"GO:0008841":null}}


id: PBO:0079092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr (anticodon GTA) 5-5","termid":"PBO:0079092"}


id: PR:P10505
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cell division cycle protein 27 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01865","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex subunit 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.01c","secondary_identifiers":["UniProtKB:P10505"],"synonyms":[{"name":"20S cyclosome/APC complex protein apc3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-CDC27","type":"exact"},{"name":"nuclear alteration protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"nuclear scaffold-like protein p76 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P10505"}


id: PBO:0079887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uroplakin 3B pseudogene 1","termid":"PBO:0079887"}


id: GO:0004211
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete caspase-9 activity (obsolete GO:0004211)","synonyms":[{"name":"caspase-9 activity","type":"exact"}],"termid":"GO:0004211"}


id: PR:P41391
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ran GTPase-activating protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02096","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ran GTPase-activating protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.07","secondary_identifiers":["UniProtKB:P41391"],"synonyms":[{"name":"Spom972h-RANGAP1","type":"exact"},{"name":"protein rna1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P41391"}


id: GO:0018835
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alkylphosphonic acid = R-CH3 + phosphate. Substrates include aminomethylphosphonic acid (AMPA) (forms methylamine), dimethylphosphinic acid (forms methylphosphonic acid), glyphosate (forms sarcosine) and methylphosphonic acid (forms phosphate).","definition_xrefs":["PMID:3804975"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lyase activity","termid":"GO:0016829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"carbon phosphorus lyase activity","secondary_identifiers":["GO:0009456","EC:4.7.1.-"],"termid":"GO:0018835"}


id: PBO:0052204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KCNQ1 opposite strand/antisense transcript 1","termid":"PBO:0052204"}


id: PBO:0074348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 7","termid":"PBO:0074348"}


id: PBO:0068062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 367","termid":"PBO:0068062"}


id: FYPO:0006152
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of SUMO-specific protease activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased peptidase activity","termid":"FYPO:0000668"},{"relation_name":"is_a","term_name":"abnormal SUMO-specific protease activity","termid":"FYPO:0006151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"decreased SUMO-specific protease activity","synonyms":[{"name":"reduced SUMO-specific protease activity","type":"exact"}],"termid":"FYPO:0006152"}


id: PBO:0083331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF YER137C","termid":"PBO:0083331"}


id: PBO:0050660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 90 beta family member 3, pseudogene","termid":"PBO:0050660"}


id: PBO:0073865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 9 member B1 pseudogene 1","termid":"PBO:0073865"}


id: FYPO:0000040
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize methionine, and therefore requires methionine in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth auxotrophic for sulfur-containing amino acid","termid":"FYPO:0003355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for methionine","synonyms":[{"name":"growth auxotrophic for methionine during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for methionine during vegetative growth","type":"exact"},{"name":"methionine auxotrophy","type":"exact"}],"termid":"FYPO:0000040"}


id: GO:0036067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors, which occur in the presence of light.","definition_xrefs":["PMID:12242396","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorophyll biosynthetic process","termid":"GO:0015995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"light-dependent chlorophyll biosynthetic process","synonyms":[{"name":"light dependent chlorophyll biosynthetic process","type":"exact"},{"name":"light-dependent chlorophyll anabolism","type":"exact"},{"name":"light-dependent chlorophyll biosynthesis","type":"exact"},{"name":"light-dependent chlorophyll formation","type":"exact"},{"name":"light-dependent chlorophyll synthesis","type":"exact"}],"termid":"GO:0036067"}


id: PBO:0053691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 886","termid":"PBO:0053691"}


id: PBO:0012305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteiasome complex subunit alpha 7, Pre10 (predicted)","termid":"PBO:0012305"}


id: PBO:0035947
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RNA_3'-end_processing_during_cellular_response_to_endoplasmic_reticulum_stress","termid":"PBO:0035947"}


id: SO:0001879
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant, caused by an alteration of the genomic sequence, where the deletion, is greater than the extent of the underlying genomic features.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural_variant","termid":"SO:0001537"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feature_ablation","synonyms":[{"name":"feature ablation","type":"exact"}],"termid":"SO:0001879"}


id: PBO:0072669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor transporter protein 2","termid":"PBO:0072669"}


id: GO:0070291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving N-acylethanolamines. An N-acylethanolamine is an ethanolamine substituted at nitrogen by an acyl group.","definition_xrefs":["PMID:14634025","PMID:15878693","CHEBI:52640","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"},{"relation_name":"is_a","term_name":"ethanolamine-containing compound metabolic process","termid":"GO:0042439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"N-acylethanolamine metabolic process","synonyms":[{"name":"N-acylethanolamine metabolism","type":"exact"},{"name":"NAE metabolic process","type":"exact"},{"name":"NAE metabolism","type":"exact"}],"termid":"GO:0070291"}


id: GO:0033004
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell activation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte activation","termid":"GO:0002695"},{"relation_name":"is_a","term_name":"regulation of mast cell activation","termid":"GO:0033003"},{"relation_name":"negatively_regulates","term_name":"mast cell activation","termid":"GO:0045576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mast cell activation","termid":"GO:0033004"}


id: PBO:0110493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 38","termid":"PBO:0110493"}


id: PBO:0071452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 58","termid":"PBO:0071452"}


id: PBO:0046440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epsin 1","termid":"PBO:0046440"}


id: PBO:0003580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-5 sterol desaturase Erg32","termid":"PBO:0003580"}


id: PBO:0030277
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_processing_during_vegetative_growth","termid":"PBO:0030277"}


id: PBO:0067703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal 1","termid":"PBO:0067703"}


id: GO:0047551
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 2-oxoaldehyde + NAD+ + H2O = a 2-oxo acid + NADH + H+.","definition_xrefs":["EC:1.2.1.23","MetaCyc:2-OXOALDEHYDE-DEHYDROGENASE-NAD+-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NAD+) activity","termid":"GO:0004029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2-oxoaldehyde dehydrogenase (NAD+) activity","secondary_identifiers":["Wikipedia:2-oxoaldehyde_dehydrogenase_(NAD+)","RHEA:22276"],"synonyms":[{"name":"2-ketoaldehyde dehydrogenase","type":"broad"},{"name":"2-oxoaldehyde dehydrogenase (NAD+)","type":"related"},{"name":"2-oxoaldehyde:NAD+ 2-oxidoreductase activity","type":"related"},{"name":"NAD-dependent alpha-ketoaldehyde dehydrogenase activity","type":"related"},{"name":"NAD-linked alpha-ketoaldehyde dehydrogenase activity","type":"related"},{"name":"alpha-ketoaldehyde dehydrogenase activity","type":"broad"},{"name":"methylglyoxal dehydrogenase activity","type":"broad"}],"termid":"GO:0047551"}


id: PBO:0085521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S24, no bacterial homolog; RPS24A has a paralog, RPS24B, that arose from the whole genome duplication","termid":"PBO:0085521"}


id: PBO:0067191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 253, pseudogene","termid":"PBO:0067191"}


id: PBO:0002364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation factor EF-1 alpha Ef1a-b","termid":"PBO:0002364"}


id: PBO:0065067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich protein HaeIII subfamily 1","termid":"PBO:0065067"}


id: PBO:0003052
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pombe Ccc1-Like","termid":"PBO:0003052"}


id: PBO:0027330
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rRNA_transcription","termid":"PBO:0027330"}


id: PBO:0083746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential component of the TIM23 complex; acts as receptor for the translocase of the inner mitochondrial membrane (TIM23) complex guiding incoming precursors from the TOM complex; may control the gating of the Tim23p-Tim17p channel","termid":"PBO:0083746"}


id: GO:0140924
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-kynurenine across a membrane.","definition_xrefs":["PMID:35245456"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-alpha-amino acid transmembrane transport","termid":"GO:1902475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"L-kynurenine transmembrane transport","termid":"GO:0140924"}


id: PBO:0053660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 837","termid":"PBO:0053660"}


id: PBO:0065484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome activator subunit 2 pseudogene 3","termid":"PBO:0065484"}


id: GO:0170044
data:
  {"annotated_genes":["SJAG_02496","SJAG_04827","SJAG_03293","SJAG_00674"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110903],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019478"},{"annotations":[83638],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036088"},{"annotations":[84457,83480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009450"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of non-proteinogenic amino acids.","definition_xrefs":["GOC:ew"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00674":null,"SJAG_02496":null,"SJAG_03293":null,"SJAG_04827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"non-proteinogenic amino acid catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"non-proteinogenic amino acid breakdown","type":"exact"},{"name":"non-proteinogenic amino acid catabolism","type":"exact"},{"name":"non-proteinogenic amino acid degradation","type":"exact"}],"termid":"GO:0170044","terms_by_termid":{"GO:0009450":null,"GO:0019478":null,"GO:0036088":null}}


id: PBO:0038758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACTR3B pseudogene 3","termid":"PBO:0038758"}


id: PBO:0081285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 70","termid":"PBO:0081285"}


id: PBO:0111329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome bigenesis rRNA methyltransferase Spb1","termid":"PBO:0111329"}


id: PR:Q9UST9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC336.05c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UST9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small RNA 2'-O-methyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC336.05c","synonyms":[{"name":"HEN1 methyltransferase homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPBC336.05c","type":"exact"}],"termid":"PR:Q9UST9"}


id: GO:0038057
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to tumor necrosis factor ligand superfamily member 11 (TNFSF11), a member of the tumor necrosis factor (TNF) cytokine family.","definition_xrefs":["GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tumor necrosis factor binding","termid":"GO:0043120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"TNFSF11 binding","synonyms":[{"name":"CD254 binding","type":"exact"},{"name":"ODF binding","type":"exact"},{"name":"OPGL binding","type":"exact"},{"name":"RANKL binding","type":"exact"},{"name":"TNF-related activation-induced cytokine binding","type":"exact"},{"name":"TRANCE binding","type":"exact"},{"name":"osteoclast differentiation factor binding","type":"exact"},{"name":"osteoprotegerin ligand binding","type":"exact"},{"name":"receptor activator of nuclear factor kappa-B ligand binding","type":"exact"},{"name":"tumor necrosis factor (ligand) superfamily member 11 binding","type":"exact"},{"name":"tumor necrosis factor ligand superfamily member 11 binding","type":"exact"},{"name":"tumor necrosis factor superfamily member 11 binding","type":"exact"}],"termid":"GO:0038057"}


id: PBO:0085866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; has similarity to Torpedo californica tCTL1p, which is postulated to be a choline transporter, neither null mutation nor overexpression affects choline transport","termid":"PBO:0085866"}


id: GO:0035076
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A nuclear receptor-mediated signaling pathway initiated by an ecdysone binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear receptor-mediated steroid hormone signaling pathway","termid":"GO:0030518"},{"relation_name":"part_of","term_name":"cellular response to ecdysone","termid":"GO:0071390"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"ecdysone receptor signaling pathway","synonyms":[{"name":"ecdysone receptor-mediated signalling pathway","type":"exact"},{"name":"nuclear receptor-mediated ecdysone signaling pathway","type":"exact"}],"termid":"GO:0035076"}


id: GO:0018915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ethylbenzene (phenylethane), a benzene derivative with an ethyl group attached to the ring. It is a colorless liquid with a pungent odor used as a solvent and as a component of automotive and aviation fuels.","definition_xrefs":["PMID:8795196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"hydrocarbon catabolic process","termid":"GO:0120253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ethylbenzene catabolic process","secondary_identifiers":["UM-BBD_pathwayID:ethb2"],"synonyms":[{"name":"ethylbenzene metabolic process","type":"broad"},{"name":"ethylbenzene metabolism","type":"broad"}],"termid":"GO:0018915"}


id: GO:0016916
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Either of two glycoproteins (designated A and B), secreted by the gonads and present in seminal plasma and follicular fluid, that inhibit pituitary production of follicle-stimulating hormone.","definition_xrefs":["ISBN:0721662544","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete inhibin (obsolete GO:0016916)","synonyms":[{"name":"inhibin","type":"exact"}],"termid":"GO:0016916"}


id: GO:0019158
data:
  {"annotated_genes":["SJAG_04334","SJAG_04495"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90578,94074],"is_not":false,"summary":null,"term":"GO:0019158"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + D-mannose = ADP + D-mannose 6-phosphate.","definition_xrefs":["EC:2.7.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexokinase activity","termid":"GO:0004396"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04334":null,"SJAG_04495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"mannokinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:MANNKIN-RXN","RHEA:11028"],"synonyms":[{"name":"ATP:D-mannose 6-phosphotransferase activity","type":"related"},{"name":"D-fructose (D-mannose) kinase activity","type":"related"},{"name":"mannokinase (phosphorylating)","type":"related"}],"termid":"GO:0019158","terms_by_termid":{"GO:0019158":null}}


id: PBO:0108626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ino80, NuA4 and Swr1 complex actin-like protein Arp4","termid":"PBO:0108626"}


id: MOD:00939
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:500"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolyzed N-methylmaleimide cysteine adduct","synonyms":[{"name":"Nmethylmaleimide+water","type":"related"},{"name":"Nmethylmaleimidehydrolysis","type":"related"}],"termid":"MOD:00939"}


id: PR:O00084
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ure2 gene.","definition_xrefs":["UniProtKB:O00084","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urease (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1952.11c","synonyms":[{"name":"Spom972h-ure2","type":"exact"},{"name":"urea amidohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O00084"}


id: PBO:0073547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 and multiple ankyrin repeat domains 1","termid":"PBO:0073547"}


id: PBO:0088076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-specific protease that cleaves ubiquitin-protein fusions; UBP9 has a paralog, UBP13, that arose from the whole genome duplication","termid":"PBO:0088076"}


id: GO:0033505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the floor plate is generated and organized.","definition_xrefs":["GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"is_a","term_name":"tissue morphogenesis","termid":"GO:0048729"},{"relation_name":"part_of","term_name":"floor plate development","termid":"GO:0033504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"floor plate morphogenesis","termid":"GO:0033505"}


id: PBO:0065489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome activator subunit 3 interacting protein 1","termid":"PBO:0065489"}


id: FYPO:0006552
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cytoplasm is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cytoplasm","termid":"FYPO:0006098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"increased protein localization to cytoplasm","synonyms":[{"name":"increased protein localisation to cytoplasm","type":"exact"},{"name":"increased protein localization to cytoplasm during mitotic cell cycle","type":"related"},{"name":"increased protein localization to cytoplasm during vegetative growth","type":"exact"}],"termid":"FYPO:0006552"}


id: PBO:0069355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 615, pseudogene","termid":"PBO:0069355"}


id: PR:Q10361
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- etp1 gene.","definition_xrefs":["UniProtKB:Q10361","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"electron transfer protein 1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.10c","synonyms":[{"name":"Spom972h-etp1","type":"exact"}],"termid":"PR:Q10361"}


id: PBO:0073492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingosine-1-phosphate phosphatase 1","termid":"PBO:0073492"}


id: PATO:0001630
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dispersed","termid":"PATO:0001630"}


id: PBO:0089181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM22 inner membrane protein insertion complex subunit Tim22","termid":"PBO:0089181"}


id: PBO:0035881
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rate_of_protein_transport_during_vegetative_growth","termid":"PBO:0035881"}


id: GO:1905286
data:
  {"annotated_genes":["SJAG_01750","SJAG_03737","SJAG_03648","SJAG_02867","SJAG_03261","SJAG_02809"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[105323,104203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042720"},{"annotations":[108707,99930,83682,94493],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005787"}]},"cv_name":"cellular_component","definition":"A protein complex which is capable of serine-type peptidase activity.","definition_xrefs":["GO_REF:0000088","GOC:TermGenie","PMID:18640965","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidase complex","termid":"GO:1905368"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01750":null,"SJAG_02809":null,"SJAG_02867":null,"SJAG_03261":null,"SJAG_03648":null,"SJAG_03737":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"serine-type peptidase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Factor VII - TF complex","type":"narrow"}],"termid":"GO:1905286","terms_by_termid":{"GO:0005787":null,"GO:0042720":null}}


id: PBO:0041065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain protein I3","termid":"PBO:0041065"}


id: PBO:0028011
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_horsetail-astral_microtubule_array","termid":"PBO:0028011"}


id: FYPO:0005901
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of actin filament-based movement is increased. Actin filament-based movement is the movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.","definition_xrefs":["GO:0030048","PomBase:mah","PMID:19570908"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin filament-based movement","termid":"FYPO:0005900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased rate of actin filament-based movement","synonyms":[{"name":"increased rate of actin filament-based movement during mitotic cell cycle","type":"related"},{"name":"increased rate of actin filament-based movement during vegetative growth","type":"exact"}],"termid":"FYPO:0005901"}


id: FYPO:0004229
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population growth phenotype in which vegetative cells grow normally (i.e. indistinguishably from wild type) during a cellular response to ionizing radiation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0000003","FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0000257"],"is_obsolete":false,"name":"normal growth during cellular response to ionizing radiation","synonyms":[{"name":"normal cell population growth during cellular response to IR","type":"exact"},{"name":"normal cell population growth during cellular response to ionizing radiation","type":"exact"},{"name":"normal cellular response to ionizing radiation","type":"related"},{"name":"normal sensitivity to ionizing radiation","type":"related"},{"name":"normal vegetative cell population growth during cellular response to ionizing radiation","type":"exact"}],"termid":"FYPO:0004229"}


id: FYPO:0003958
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of diacylglycerol O-acyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000707","FYPO:0000652","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"abnormal diacylglycerol O-acyltransferase activity","synonyms":[{"name":"abnormal DGAT activity","type":"exact"},{"name":"abnormal diacylglycerol acyltransferase activity","type":"broad"}],"termid":"FYPO:0003958"}


id: PR:000050502
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the dis1 gene in Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOG/XMAP215 microtubule plus end tracking polymerase Dis1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPCC736.14","synonyms":[{"name":"SPCC736.14","type":"related"},{"name":"Spom-dis1","type":"exact"},{"name":"dis1","type":"related"},{"name":"phosphoprotein p99","type":"exact"}],"termid":"PR:000050502"}


id: PR:O74893
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 40S ribosomal protein S20 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04938","PANTHER:PTHR11700:SF3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S20 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC576.09","secondary_identifiers":["UniProtKB:O74893"],"synonyms":[{"name":"Spom972h-RPS20","type":"exact"}],"termid":"PR:O74893"}


id: PBO:0060347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin XVB","termid":"PBO:0060347"}


id: GO:0047424
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 H2O + methylenediurea = CO2 + 2 NH3 + N-hydroxymethylurea.","definition_xrefs":["EC:3.5.3.21","RHEA:15929","MetaCyc:3.5.3.21-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"methylenediurea deaminase activity","synonyms":[{"name":"methylenediurea aminohydrolase activity","type":"related"},{"name":"methylenediurease activity","type":"related"}],"termid":"GO:0047424"}


id: PBO:0053278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte immunoglobulin like receptor B4","termid":"PBO:0053278"}


id: GO:0021861
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroepithelial cells of the neural tube give rise to radial glial cells, specialized bipotential progenitors cells of the forebrain. Differentiation includes the processes involved in commitment of a cell to a specific fate.","definition_xrefs":["PMID:16226447","GOC:dph","GOC:cls","GO_REF:0000021","GOC:jid","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radial glial cell differentiation","termid":"GO:0060019"},{"relation_name":"part_of","term_name":"forebrain generation of neurons","termid":"GO:0021872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"forebrain radial glial cell differentiation","synonyms":[{"name":"radial glial cell differentiation in forebrain","type":"exact"}],"termid":"GO:0021861"}


id: PBO:0077696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tankyrase","termid":"PBO:0077696"}


id: GO:0075260
data:
  {"annotated_genes":["SJAG_03501"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114402],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075319"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of spore-bearing organ development, a process in which hyphae grow into special aggregates called fruiting bodies that produce new spores.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"spore-bearing structure development","termid":"GO:0075259"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03501":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of spore-bearing organ development","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0075260","terms_by_termid":{"GO:0075319":null}}


id: PBO:0080838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Y-box binding protein 1 pseudogene 2","termid":"PBO:0080838"}


id: GO:0042435
data:
  {"annotated_genes":["SJAG_05007","SJAG_03167","SJAG_01455","SJAG_02505"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99608,87597,100503,110817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000162"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of compounds that contain an indole (2,3-benzopyrrole) skeleton.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"indole-containing compound metabolic process","termid":"GO:0042430"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01455":null,"SJAG_02505":null,"SJAG_03167":null,"SJAG_05007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"indole-containing compound biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"indole derivative biosynthesis","type":"exact"},{"name":"indole derivative biosynthetic process","type":"exact"},{"name":"indole-containing compound anabolism","type":"exact"},{"name":"indole-containing compound biosynthesis","type":"exact"},{"name":"indole-containing compound formation","type":"exact"},{"name":"indole-containing compound synthesis","type":"exact"}],"termid":"GO:0042435","terms_by_termid":{"GO:0000162":null}}


id: GO:0022835
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a solute by a channel that opens when a specific neurotransmitter has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligand-gated channel activity","termid":"GO:0022834"},{"relation_name":"is_a","term_name":"neurotransmitter receptor activity","termid":"GO:0030594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0038023","GO:0003674"],"is_obsolete":false,"name":"transmitter-gated channel activity","synonyms":[{"name":"extracellular substance gated channel activity","type":"exact"},{"name":"neurotransmitter-gated channel activity","type":"exact"}],"termid":"GO:0022835"}


id: PBO:0044742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 20","termid":"PBO:0044742"}


id: PBO:0081422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF277 antisense RNA 1","termid":"PBO:0081422"}


id: GO:0060933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a His-Purkinje cell over time, from its formation to the mature state. These cells form the fibers that regulate cardiac muscle contraction in the ventricles.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac cell development","termid":"GO:0055006"},{"relation_name":"part_of","term_name":"His-Purkinje system cell differentiation","termid":"GO:0060932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"His-Purkinje system cell development","termid":"GO:0060933"}


id: RO:0002591
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"has_input","termid":"RO:0002233"},{"relation_name":"is_a","term_name":"results_in_organization_of","termid":"RO:0002592"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_remodeling_of","termid":"RO:0002591"}


id: FYPO:0006668
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed during G0 phase in which the size, shape, or structure of the nucleus is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear morphology","termid":"FYPO:0001673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal nuclear morphology during G0","synonyms":[{"name":"normal nuclear morphology during cell quiescence","type":"exact"},{"name":"normal nuclear morphology during quiescence","type":"exact"}],"termid":"FYPO:0006668"}


id: PBO:0004665
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chorea-acanthocytosis","termid":"PBO:0004665"}


id: GO:0120241
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyzes the hydrolytic deamination of imine intermediates formed by several types of pyridoxal-5'-phosphate-dependent dehydratases, such as EC 4.3.1.19 and EC 4.3.1.17.","definition_xrefs":["EC:3.5.99.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"2-iminobutanoate/2-iminopropanoate deaminase","synonyms":[{"name":"2-iminobutanoate deaminase","type":"narrow"},{"name":"2-iminopropanoate deaminase","type":"narrow"},{"name":"enamine/imine deaminase","type":"broad"},{"name":"imine intermediate deaminase activity","type":"related"}],"termid":"GO:0120241"}


id: PBO:0083585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; transcript is predicted to be spliced but there is no evidence that it is spliced in vivo","termid":"PBO:0083585"}


id: PBO:0042111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCDC183 antisense RNA 1","termid":"PBO:0042111"}


id: PBO:0086619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm","termid":"PBO:0086619"}


id: PBO:0086278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a potential role in cell survival pathways; required for the diauxic growth shift; expression in mammalian cells increases survival under conditions inducing apoptosis; mutant has increased aneuploidy tolerance","termid":"PBO:0086278"}


id: GO:1902201
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of bacterial-type flagellum-dependent cell motility.","definition_xrefs":["GOC:jl","GOC:TermGenie","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of bacterial-type flagellum-dependent cell motility","termid":"GO:1902021"},{"relation_name":"is_a","term_name":"negative regulation of cell motility","termid":"GO:2000146"},{"relation_name":"negatively_regulates","term_name":"bacterial-type flagellum-dependent cell motility","termid":"GO:0071973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of bacterial-type flagellum-dependent cell motility","synonyms":[{"name":"down regulation of bacterial-type flagellar cell motility","type":"exact"},{"name":"down regulation of flagellin-based flagellar cell motility","type":"exact"},{"name":"down-regulation of bacterial-type flagellar cell motility","type":"exact"},{"name":"down-regulation of flagellin-based flagellar cell motility","type":"exact"},{"name":"downregulation of bacterial-type flagellar cell motility","type":"exact"},{"name":"downregulation of flagellin-based flagellar cell motility","type":"exact"},{"name":"inhibition of bacterial-type flagellar cell motility","type":"narrow"},{"name":"inhibition of flagellin-based flagellar cell motility","type":"exact"},{"name":"negative regulation of bacterial-type flagellar cell motility","type":"related"},{"name":"negative regulation of flagellin-based flagellar cell motility","type":"exact"}],"termid":"GO:1902201"}


id: PBO:0041475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 58","termid":"PBO:0041475"}


id: MOD:00009
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that removes a residue, or inserts or replaces a residue with a natural, standard or nonstandard, encoded residue.","definition_xrefs":["PubMed:6692818","RESID:AA0000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"natural residue","synonyms":[{"name":"Res","type":"exact"},{"name":"alpha-amino acid","type":"exact"}],"termid":"MOD:00009"}


id: PATO:0001558
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extra or missing processual parts","termid":"PATO:0001564"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lacking processual parts","termid":"PATO:0001558"}


id: GO:0097278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell killing caused by the membrane attack complex formed following complement activation.","definition_xrefs":["GOC:rv","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell killing","termid":"GO:0001906"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"complement-dependent cytotoxicity","termid":"GO:0097278"}


id: GO:2000526
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any positive regulation of glycoprotein biosynthetic process that is involved in immunological synapse formation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of glycoprotein biosynthetic process","termid":"GO:0010560"},{"relation_name":"part_of","term_name":"immunological synapse formation","termid":"GO:0001771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of glycoprotein biosynthetic process involved in immunological synapse formation","synonyms":[{"name":"positive regulation of glycoprotein biosynthetic process of formation of immunological synapse","type":"exact"},{"name":"positive regulation of glycoprotein biosynthetic process of immunological synapse formation","type":"exact"}],"termid":"GO:2000526"}


id: PBO:0110041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NGRN pseudogene 4","termid":"PBO:0110041"}


id: FYPO:0004966
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of horsetail movement is longer than normal. Horsetail movement is the oscillatory movement of the nucleus that takes place during meiotic prophase I.","definition_xrefs":["GO:0030989","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal horsetail movement","termid":"FYPO:0000197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of horsetail movement","synonyms":[{"name":"increased duration of dynein-driven meiotic oscillatory nuclear movement","type":"exact"},{"name":"increased duration of horsetail nuclear movement","type":"exact"},{"name":"prolonged horsetail movement","type":"exact"}],"termid":"FYPO:0004966"}


id: PBO:0040128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and SOCS box containing 14","termid":"PBO:0040128"}


id: GO:2000770
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of establishment or maintenance of cell polarity regulating cell shape.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of cell polarity regulating cell shape","termid":"GO:2000769"},{"relation_name":"negatively_regulates","term_name":"establishment or maintenance of cell polarity regulating cell shape","termid":"GO:0071963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007163"},{"rel_name":"regulates","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"negative regulation of establishment or maintenance of cell polarity regulating cell shape","termid":"GO:2000770"}


id: PBO:0058606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6738","termid":"PBO:0058606"}


id: GO:0032194
data:
  {"annotated_genes":["SJAG_00933"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104298],"is_not":false,"summary":null,"term":"GO:0032194"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ubiquinone, via the intermediates 3,4-dihydroxy-5-polyprenylbenzoate and 3-methoxy-4-hydroxy-5-polyprenylbenzoate.","definition_xrefs":["GOC:mah","PMID:11583838"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquinone biosynthetic process","termid":"GO:0006744"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006744"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006744"],"is_obsolete":false,"name":"ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032194","terms_by_termid":{"GO:0032194":null}}


id: PR:G2TRK5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC110.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRK5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C110.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC110.05","synonyms":[{"name":"Spom972h-SPAC110.05","type":"exact"}],"termid":"PR:G2TRK5"}


id: PBO:0046150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elastase, neutrophil expressed","termid":"PBO:0046150"}


id: PBO:0072801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spalt like transcription factor 4 pseudogene 7","termid":"PBO:0072801"}


id: PBO:0090671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S23","termid":"PBO:0090671"}


id: SO:0000712
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene encoding a transcript that has a translational frameshift.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"translationally_frameshifted","termid":"SO:0000887"},{"relation_name":"is_a","term_name":"gene_with_recoded_mRNA","termid":"SO:0000693"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_with_transcript_with_translational_frameshift","synonyms":[{"name":"gene with transcript with translational frameshift","type":"exact"}],"termid":"SO:0000712"}


id: PBO:0064661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A like 4D","termid":"PBO:0064661"}


id: PBO:0043555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type IV alpha 4 chain","termid":"PBO:0043555"}


id: PBO:0085213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform; shares redundant functions with Yck1p in morphogenesis, proper septin assembly, endocytic trafficking, and glucose sensing; stabilized by Sod1p binding in the presence of glucose and oxygen, causing glucose repression of respiratory metabolism; involved in the phosphorylation and regulation of glucose sensor Rgt2p; YCK2 has a paralog, YCK1, that arose from the whole genome duplication","termid":"PBO:0085213"}


id: PBO:0070191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 111 pseudogene","termid":"PBO:0070191"}


id: GO:0034167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 10 signaling pathway.","definition_xrefs":["PMID:17328678","GOC:add","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pattern recognition receptor signaling pathway","termid":"GO:0062207"},{"relation_name":"regulates","term_name":"toll-like receptor 10 signaling pathway","termid":"GO:0034166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of toll-like receptor 10 signaling pathway","synonyms":[{"name":"regulation of TLR10 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 10 signalling pathway","type":"exact"}],"termid":"GO:0034167"}


id: PBO:0054498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1898","termid":"PBO:0054498"}


id: GO:0052394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of symbiont processes resulting in the thickening of its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by organism of defense-related symbiont cell wall thickening (obsolete GO:0052394)","synonyms":[{"name":"activation by organism of symbiont defense-related cell wall thickening","type":"exact"},{"name":"activation by organism of symbiont defensive cell wall thickening","type":"exact"},{"name":"induction by organism of defense-related symbiont cell wall thickening","type":"exact"},{"name":"induction by organism of symbiont defensive cell wall thickening","type":"exact"}],"termid":"GO:0052394"}


id: PBO:0088421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk9","termid":"PBO:0088421"}


id: PBO:0061064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium/potassium transporting ATPase interacting 3","termid":"PBO:0061064"}


id: PBO:0050252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 30","termid":"PBO:0050252"}


id: FYPO:0007473
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which histone exchange is abnormal during G0 phase. Histone exchange is replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.","definition_xrefs":["GO:0043486","PMID:31315658","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone turnover","termid":"FYPO:0007472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"decreased histone turnover during G0","synonyms":[{"name":"decreased histone exchange during G0 during cell quiescence","type":"exact"},{"name":"decreased histone exchange during G0 during quiescence","type":"exact"}],"termid":"FYPO:0007473"}


id: GO:0030787
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine(1+) + myo-inositol = 1D-4-O-methyl-myo-inositol + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["RHEA:23248","EC:2.1.1.129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"inositol 4-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01190","MetaCyc:2.1.1.129-RXN"],"synonyms":[{"name":"S-adenosyl-L-methionine:1D-myo-inositol 4-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:myo-inositol 4-O-methyltransferase activity","type":"related"},{"name":"myo-inositol 4-O-methyltransferase activity","type":"related"},{"name":"myo-inositol 6-O-methyltransferase activity","type":"related"}],"termid":"GO:0030787"}


id: GO:0045175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is transported to, or maintained in, basal regions of the cell.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"basal protein localization","synonyms":[{"name":"basal protein localisation","type":"exact"},{"name":"establishment and maintenance of basal protein localization","type":"exact"},{"name":"establishment and maintenance of protein localization in basal part of cell","type":"exact"}],"termid":"GO:0045175"}


id: GO:0051665
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which membrane rafts are transported to, or maintained in, a specific location. Membrane rafts are small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes.","definition_xrefs":["GOC:ai","PMID:16645198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization within membrane","termid":"GO:0051668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"membrane raft localization","synonyms":[{"name":"establishment and maintenance of membrane raft localization","type":"exact"},{"name":"lipid raft localization","type":"exact"},{"name":"membrane raft localisation","type":"exact"}],"termid":"GO:0051665"}


id: GO:0072633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interleukin-30 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["PMID:30328794","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"interleukin-30 production","secondary_identifiers":["GO:0072634"],"synonyms":[{"name":"IL-30 production","type":"exact"},{"name":"interleukin-30 complex production","type":"exact"},{"name":"interleukin-30 secretion","type":"narrow"}],"termid":"GO:0072633"}


id: GO:1990260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter using a mechanism that involves the localization of a transcription factor and initiated in response to the DNA damage checkpoint signaling.","definition_xrefs":["PMID:24006488"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transcription from RNA polymerase II promoter by transcription factor localization involved in response to DNA damage checkpoint signaling (obsolete GO:1990260)","termid":"GO:1990260"}


id: MOD:01458
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with an acetyl group.","definition_xrefs":["Unimod:1#N-term","OMSSA:10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylated residue","termid":"MOD:00408"},{"relation_name":"is_a","term_name":"alpha-amino acylated residue","termid":"MOD:01696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"alpha-amino acetylated residue","synonyms":[{"name":"N2AcRes","type":"exact"},{"name":"ntermacetyl","type":"exact"}],"termid":"MOD:01458"}


id: PBO:0109120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolase Hhy1","termid":"PBO:0109120"}


id: PBO:0053274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte immunoglobulin like receptor B1","termid":"PBO:0053274"}


id: MOD:00137
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue into L-3-phenyllactic acid.","definition_xrefs":["Unimod:7#F","PubMed:1973541","RESID:AA0128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-phenylalanine residue","termid":"MOD:00914"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-3-phenyllactic acid","synonyms":[{"name":"(2S)-2-hydroxy-3-phenylpropanoic acid","type":"exact"},{"name":"Deamidated","type":"related"},{"name":"Deamidation","type":"related"},{"name":"L-3-phenyllactic acid","type":"exact"},{"name":"MOD_RES 3-phenyllactic acid","type":"exact"}],"termid":"MOD:00137"}


id: PBO:0062178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OR4M2 overlapping transcript 1","termid":"PBO:0062178"}


id: PBO:0076807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tektin 5","termid":"PBO:0076807"}


id: GO:0030760
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine(1+) + pyridine = N-methylpyridinium + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.87","RHEA:16893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"pyridine N-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R02862","MetaCyc:PYRIDINE-N-METHYLTRANSFERASE-RXN","Reactome:R-HSA-175987"],"synonyms":[{"name":"S-adenosyl-L-methionine:pyridine N-methyltransferase activity","type":"related"},{"name":"pyridine methyltransferase activity","type":"related"}],"termid":"GO:0030760"}


id: PBO:0028990
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_splicing_at_cryptic_splice_sites","termid":"PBO:0028990"}


id: GO:0006606
data:
  {"annotated_genes":["SJAG_03907","SJAG_02425","SJAG_04148","SJAG_03002","SJAG_02998","SJAG_01909","SJAG_02520","SJAG_03299","SJAG_01328","SJAG_01083","SJAG_04366","SJAG_01834","SJAG_03986","SJAG_02274","SJAG_03593","SJAG_03048","SJAG_03729","SJAG_00840","SJAG_00471","SJAG_00065","SJAG_03959","SJAG_04411","SJAG_01185","SJAG_00586","SJAG_02592","SJAG_03300","SJAG_01013","SJAG_00968","SJAG_00383","SJAG_01584","SJAG_00375","SJAG_01621","SJAG_01655","SJAG_01374","SJAG_00093","SJAG_03470","SJAG_01311","SJAG_03453","SJAG_03693","SJAG_01065","SJAG_02210","SJAG_01789","SJAG_02757","SJAG_04645","SJAG_03662","SJAG_01449"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65721,84946,85041,85459,86977,87948,89433,89487,90030,90326,91021,91815,92180,93897,96494,98654,98751,99104,99486,99779,100678,101171,101501,102450,102685,103054,103900,104599,106567,109402,110614,111051,111149,111677,111968,111994,113437,114876],"is_not":false,"summary":null,"term":"GO:0006606"},{"annotations":[101928],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0042308"},{"annotations":[114875,102270,87741,97237,112591,99778],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006607"},{"annotations":[98480,90413,86877],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0042307"}]},"cv_name":"biological_process","definition":"The directed movement of a protein from the cytoplasm to the nucleus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"},{"relation_name":"is_a","term_name":"protein localization to nucleus","termid":"GO:0034504"},{"relation_name":"is_a","term_name":"import into nucleus","termid":"GO:0051170"},{"relation_name":"is_a","term_name":"establishment of protein localization to organelle","termid":"GO:0072594"}],"gene_count":46,"genes_by_uniquename":{"SJAG_00065":null,"SJAG_00093":null,"SJAG_00375":null,"SJAG_00383":null,"SJAG_00471":null,"SJAG_00586":null,"SJAG_00840":null,"SJAG_00968":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01083":null,"SJAG_01185":null,"SJAG_01311":null,"SJAG_01328":null,"SJAG_01374":null,"SJAG_01449":null,"SJAG_01584":null,"SJAG_01621":null,"SJAG_01655":null,"SJAG_01789":null,"SJAG_01834":null,"SJAG_01909":null,"SJAG_02210":null,"SJAG_02274":null,"SJAG_02425":null,"SJAG_02520":null,"SJAG_02592":null,"SJAG_02757":null,"SJAG_02998":null,"SJAG_03002":null,"SJAG_03048":null,"SJAG_03299":null,"SJAG_03300":null,"SJAG_03453":null,"SJAG_03470":null,"SJAG_03593":null,"SJAG_03662":null,"SJAG_03693":null,"SJAG_03729":null,"SJAG_03907":null,"SJAG_03959":null,"SJAG_03986":null,"SJAG_04148":null,"SJAG_04366":null,"SJAG_04411":null,"SJAG_04645":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006913"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006913","GO:0006810"],"is_obsolete":false,"name":"protein import into nucleus","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"establishment of protein localization to nucleus","type":"exact"},{"name":"protein import into cell nucleus","type":"exact"},{"name":"protein nucleus import","type":"exact"},{"name":"protein transport from cytoplasm to nucleus","type":"exact"}],"termid":"GO:0006606","terms_by_termid":{"GO:0006606":null,"GO:0006607":null,"GO:0042307":null,"GO:0042308":null}}


id: PBO:0041132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 10 pseudogene 2","termid":"PBO:0041132"}


id: PBO:0088369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-arabinono-1,4-lactone oxidase","termid":"PBO:0088369"}


id: MOD:01020
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioanisyl","termid":"MOD:01020"}


id: PBO:0028284
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_Ku-0063794","termid":"PBO:0028284"}


id: PBO:0082566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chaperone required for correct maturation of the 20S proteasome; short-lived chaperone; may inhibit premature dimerization of proteasome half-mers; degraded by proteasome upon completion of its assembly","termid":"PBO:0082566"}


id: PBO:0053341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 210","termid":"PBO:0053341"}


id: GO:0141043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a symbiont avoids recognition by host's innate immune response by altering, concealing or destroying a conserved symbiont molecule recognized by the host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:26502908","PMID:29101229","PMID:15014080","PMID:22131330"],"direct_ancestors":[{"relation_name":"is_a","term_name":"evasion of host immune response","termid":"GO:0042783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated evasion of host innate immune response","synonyms":[{"name":"evasion of host innate immune recognition","type":"related"},{"name":"evasion of host innate immune response","type":"exact"}],"termid":"GO:0141043"}


id: PATO:0002128
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering a bearer by virtue of the bearer's containing or resembling serum.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serous","termid":"PATO:0002128"}


id: GO:1903566
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to cilium.","definition_xrefs":["GOC:krc","GO_REF:0000058","PMID:22072986","GOC:cilia","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to cilium","termid":"GO:1903564"},{"relation_name":"is_a","term_name":"positive regulation of protein localization","termid":"GO:1903829"},{"relation_name":"positively_regulates","term_name":"protein localization to cilium","termid":"GO:0061512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to cilium","synonyms":[{"name":"activation of protein localization to cilium","type":"narrow"},{"name":"up regulation of protein localization to cilium","type":"exact"},{"name":"up-regulation of protein localization to cilium","type":"exact"},{"name":"upregulation of protein localization to cilium","type":"exact"}],"termid":"GO:1903566"}


id: PBO:0029516
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_vegetative_cell_population_with_abnormal_cell_shape_(obsolete_FYPO:0002198)","termid":"PBO:0029516"}


id: GO:0003395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed, self-propelled movement of a neuron that contributes to the process of retrograde extension of a dendrite.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron migration involved in retrograde extension","termid":"GO:0003393"},{"relation_name":"part_of","term_name":"dendrite development by retrograde extension","termid":"GO:0003390"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron migration involved in dendrite retrograde extension","termid":"GO:0003395"}


id: PBO:0113224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Multigene complex, polymeric locus for maltose fermentation; encodes the MAL23 trans-acting MAL-activator, MAL21 maltose permease, and MAL22 maltase; on the right arm of Chromosome III, but not in strain S288C; mapped to 95.0 cM on chrIII","termid":"PBO:0113224"}


id: GO:0110067
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"High affinity ammonium transporter complex that enables the transfer of ammonium from one side of a membrane to the other.","definition_xrefs":["GOC:bhm","PMID:17026539","PMID:23463773"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter complex","termid":"GO:1902495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"ammonium transmembrane transporter complex","synonyms":[{"name":"AMT1 complex","type":"narrow"}],"termid":"GO:0110067"}


id: GO:0018615
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-indanone + NADPH + 1/2 O2 = NADP+ + 3-isochromanone.","definition_xrefs":["UM-BBD_reactionID:r0424"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-indanone monooxygenase activity (obsolete GO:0018615)","termid":"GO:0018615"}


id: PBO:0111822
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAT repeat protein","termid":"PBO:0111822"}


id: FYPO:0000713
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A stress response phenotype in which the response to starvation for one or more nutrients is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular response to stress","termid":"FYPO:0000162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal cellular response to starvation","synonyms":[{"name":"abnormal cellular response to depletion","type":"exact"},{"name":"abnormal cellular response to deprivation","type":"exact"}],"termid":"FYPO:0000713"}


id: PR:O14170
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pop2 gene.","definition_xrefs":["UniProtKB:O14170","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat-containing protein pop2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4D7.03","synonyms":[{"name":"Spom972h-pop2","type":"exact"},{"name":"proteolysis factor sud1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14170"}


id: PBO:0046230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 23","termid":"PBO:0046230"}


id: PBO:0002083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosamine-phosphate N-acetyltransferase (predicted)","termid":"PBO:0002083"}


id: PBO:0004415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk24","termid":"PBO:0004415"}


id: PBO:0112982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5' to 3' exonuclease, 5' flap endonuclease; required for Okazaki fragment processing and maturation, for long-patch base-excision repair and large loop repair (LLR), ribonucleotide excision repair; cleaves off RNA flap in a RNA:DNA hybrid intermediate during processing of DNA lagging strand; relocalizes to the cytosol in response to hypoxia; member of the S. pombe RAD2/FEN1 family","termid":"PBO:0112982"}


id: PBO:0111849
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PUA domain","termid":"PBO:0111849"}


id: PBO:0001389
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wolf-Hirschhorn syndrome","termid":"PBO:0001389"}


id: PBO:0042610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDRT15 pseudogene 10","termid":"PBO:0042610"}


id: PBO:0000703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SR family","termid":"PBO:0000703"}


id: PBO:0049351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIi pseudogene 9","termid":"PBO:0049351"}


id: PBO:0061494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neural retina leucine zipper","termid":"PBO:0061494"}


id: GO:0004018
data:
  {"annotated_genes":["SJAG_02850"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99529],"is_not":false,"summary":null,"term":"GO:0004018"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: N6-(1,2-dicarboxyethyl)AMP = fumarate + AMP.","definition_xrefs":["RHEA:16853"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amidine-lyase activity","termid":"GO:0016842"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02850":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:4.3.2.2","KEGG_REACTION:R01083","MetaCyc:AMPSYN-RXN"],"synonyms":[{"name":"6-N-(1,2-dicarboxyethyl)AMP AMP-lyase activity","type":"related"},{"name":"N6-(1,2-dicarboxyethyl)AMP AMP-lyase activity","type":"related"},{"name":"adenylosuccinase activity","type":"broad"},{"name":"adenylosuccinate lyase activity","type":"broad"},{"name":"succino AMP-lyase activity","type":"broad"}],"termid":"GO:0004018","terms_by_termid":{"GO:0004018":null}}


id: GO:0038123
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding of a heterodimeric TLR1:TLR2 complex, followed by transmission of the signal by the activated receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:17318230","GOC:signaling","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toll-like receptor signaling pathway","termid":"GO:0002224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"toll-like receptor TLR1:TLR2 signaling pathway","synonyms":[{"name":"TLR2:TLR1 signaling pathway","type":"exact"},{"name":"toll-like receptor TLR1:TLR2 signalling pathway","type":"exact"}],"termid":"GO:0038123"}


id: GO:0045671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of osteoclast differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of myeloid leukocyte differentiation","termid":"GO:0002762"},{"relation_name":"is_a","term_name":"regulation of osteoclast differentiation","termid":"GO:0045670"},{"relation_name":"negatively_regulates","term_name":"osteoclast differentiation","termid":"GO:0030316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of osteoclast differentiation","synonyms":[{"name":"down regulation of osteoclast differentiation","type":"exact"},{"name":"down-regulation of osteoclast differentiation","type":"exact"},{"name":"downregulation of osteoclast differentiation","type":"exact"},{"name":"inhibition of osteoclast differentiation","type":"narrow"}],"termid":"GO:0045671"}


id: GO:0015361
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: dicarboxylate(out) + Na+(out) = dicarboxylate(in) + Na+(in). In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations.","definition_xrefs":["TC:2.A.47.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium:dicarboxylate symporter activity","termid":"GO:0017153"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"low-affinity sodium:dicarboxylate symporter activity","secondary_identifiers":["Reactome:R-HSA-433131"],"synonyms":[{"name":"low affinity sodium:dicarboxylate cotransporter activity","type":"broad"},{"name":"low affinity sodium:dicarboxylate symporter activity","type":"exact"}],"termid":"GO:0015361"}


id: PBO:0071425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 31","termid":"PBO:0071425"}


id: PBO:0065853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB11 family interacting protein 4","termid":"PBO:0065853"}


id: GO:0045247
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex located in the cytosol containing flavin adenine dinucleotide (FAD) that, together with an acyl-CoA dehydrogenase, forms a system that oxidizes an acyl-CoA molecule and reduces ubiquinone and other acceptors.","definition_xrefs":["GOC:mtg_sensu","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"electron transfer flavoprotein complex","termid":"GO:0045251"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"}],"interesting_parent_ids":["GO:0005829","GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"cytosolic electron transfer flavoprotein complex","termid":"GO:0045247"}


id: PBO:0084295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Intra-Golgi v-SNARE; required for transport of proteins between an early and a later Golgi compartment","termid":"PBO:0084295"}


id: PBO:0028495
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_degradation_via_N-end_rule_pathway_during_vegetative_growth","termid":"PBO:0028495"}


id: PBO:0036479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase copper chaperone Cox17 (predicted)","termid":"PBO:0036479"}


id: GO:0031591
data:
  {"annotated_genes":["SJAG_04735","SJAG_05334","SJAG_01261","SJAG_04265"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90742,94141,102046,109978],"is_not":false,"summary":null,"term":"GO:0031591"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of wybutosine, 3H-imidazo[1,2-alpha]purine-7-butanoic acid, 4,9-dihydro- alpha-[(methoxycarbonyl)amino]- 4,6-dimethyl-9-oxo- 3-beta-D-ribofuranosyl methyl ester, a modified nucleoside found in some tRNA molecules.","definition_xrefs":["GOC:hjd","GOC:mah","RNAmods:037"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"},{"relation_name":"is_a","term_name":"wybutosine metabolic process","termid":"GO:0031590"},{"relation_name":"is_a","term_name":"glycosyl compound biosynthetic process","termid":"GO:1901659"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01261":null,"SJAG_04265":null,"SJAG_04735":null,"SJAG_05334":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006399"],"is_obsolete":false,"name":"wybutosine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"yW biosynthesis","type":"exact"},{"name":"yW biosynthetic process","type":"exact"}],"termid":"GO:0031591","terms_by_termid":{"GO:0031591":null}}


id: PBO:0068215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 522","termid":"PBO:0068215"}


id: GO:0140033
data:
  {"annotated_genes":["SJAG_02500","SJAG_00591","SJAG_00837","SJAG_05252","SJAG_02625","SJAG_02701"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77527,69793,78764,74211,77657,75821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070577"}]},"cv_name":"molecular_function","definition":"Binding to a protein upon acetylation of the target protein.","definition_xrefs":["PMID:26060076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modification-dependent protein binding","termid":"GO:0140030"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00591":null,"SJAG_00837":null,"SJAG_02500":null,"SJAG_02625":null,"SJAG_02701":null,"SJAG_05252":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"acetylation-dependent protein binding","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0140033","terms_by_termid":{"GO:0070577":null}}


id: PBO:0070369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY5 pseudogene 7","termid":"PBO:0070369"}


id: GO:1990931
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the oxidative demethylation of N6-methyladenosine RNA, with concomitant decarboxylation of 2-oxoglutarate and releases oxidized methyl group on N6-methyladenosine as formaldehyde.","definition_xrefs":["PMID:26458103","PMID:22002720"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidative RNA demethylase activity","termid":"GO:0035515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0140098","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"mRNA N6-methyladenosine dioxygenase activity","secondary_identifiers":["EC:1.14.11.53","RHEA:49520"],"synonyms":[{"name":"RNA N6-methyladenosine dioxygenase activity","type":"related"},{"name":"mRNA N(6)-methyladenine demethylase","type":"exact"},{"name":"mRNA N(6)-methyladenosine dioxygenase activity","type":"exact"}],"termid":"GO:1990931"}


id: GO:0098525
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A neuromuscular junction that functions in the excitation of somatic muscle myotubes, such as an arthropod somatic muscle cells.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"excitatory neuromuscular junction","termid":"GO:0098520"},{"relation_name":"is_a","term_name":"neuromuscular junction of somatic muscle myotube","termid":"GO:0098524"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"excitatory neuromuscular junction of somatic myotube","termid":"GO:0098525"}


id: GO:0031235
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of a plasma membrane consisting of gene products and protein complexes that have some covalently attached part (e.g. peptide sequence or GPI anchor) which is embedded in the cytoplasmic side of the plasma membrane only.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of the cytoplasmic side of the plasma membrane (obsolete GO:0031235)","synonyms":[{"name":"intrinsic to cytoplasmic side of plasma membrane","type":"narrow"},{"name":"intrinsic to internal leaflet of plasma membrane","type":"exact"},{"name":"intrinsic to internal side of plasma membrane","type":"exact"}],"termid":"GO:0031235"}


id: GO:0051511
data:
  {"annotated_genes":["SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86756],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051517"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell morphogenesis","termid":"GO:0010771"},{"relation_name":"is_a","term_name":"negative regulation of cell growth","termid":"GO:0030308"},{"relation_name":"is_a","term_name":"negative regulation of developmental growth","termid":"GO:0048640"},{"relation_name":"is_a","term_name":"regulation of unidimensional cell growth","termid":"GO:0051510"},{"relation_name":"negatively_regulates","term_name":"unidimensional cell growth","termid":"GO:0009826"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02169":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of unidimensional cell growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of unidimensional cell growth","type":"exact"},{"name":"down-regulation of unidimensional cell growth","type":"exact"},{"name":"downregulation of unidimensional cell growth","type":"exact"},{"name":"inhibition of unidimensional cell growth","type":"narrow"},{"name":"negative regulation of cell elongation","type":"narrow"}],"termid":"GO:0051511","terms_by_termid":{"GO:0051517":null}}


id: GO:1900599
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of demethylkotanin.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"demethylkotanin metabolic process","termid":"GO:1900597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"demethylkotanin biosynthetic process","synonyms":[{"name":"demethylkotanin anabolism","type":"exact"},{"name":"demethylkotanin biosynthesis","type":"exact"},{"name":"demethylkotanin formation","type":"exact"},{"name":"demethylkotanin synthesis","type":"exact"}],"termid":"GO:1900599"}


id: GO:0010675
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, extent or frequency of the chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cellular carbohydrate metabolic process (obsolete GO:0010675)","termid":"GO:0010675"}


id: PBO:0042793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 170 pseudogene 1","termid":"PBO:0042793"}


id: GO:0044211
data:
  {"annotated_genes":["SJAG_00533","SJAG_03708"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88996,111071],"is_not":false,"summary":null,"term":"GO:0044211"}]},"cv_name":"biological_process","definition":"Any process which produces cytidine 5'-triphosphate (CTP) from derivatives of it, without de novo synthesis.","definition_xrefs":["PMID:10501935","GOC:ecd","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CTP biosynthetic process","termid":"GO:0006241"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide salvage","termid":"GO:0010138"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00533":null,"SJAG_03708":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"CTP salvage","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"CTP biosynthetic process via salvage pathway","type":"exact"},{"name":"cytidine 5'-triphosphate salvage","type":"exact"}],"termid":"GO:0044211","terms_by_termid":{"GO:0044211":null}}


id: MOD:01859
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-phenylalanine residue to form 4-amino-3-isothiazolidinone-L-phenylalanine.","definition_xrefs":["RESID:AA0562","PubMed:17502599"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isothiazolidinone ring crosslinked residues","termid":"MOD:01861"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"},{"relation_name":"is_a","term_name":"crosslinked L-phenylalanine residue","termid":"MOD:02053"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-amino-3-isothiazolidinone-L-phenylalanine","synonyms":[{"name":"(2S)-2-[(4R)-4-amino-3-oxo-1,2-thiazolidin-2-yl]-3-phenylpropanoic acid","type":"exact"},{"name":"2-(4-amino-3-oxo-isothiazolidin-2-yl)-3-phenylpropanoic acid","type":"exact"},{"name":"4-amino-3-isothiazolidinone-L-phenylalanine","type":"exact"},{"name":"CROSSLNK N,N-(cysteine-1,S-diyl)phenylalanine (Cys-Phe)","type":"exact"},{"name":"N,N-(L-cysteine-1,S-diyl)-L-phenylalanine","type":"exact"},{"name":"cysteinyl phenylalanine sulfenamide","type":"exact"},{"name":"phenylalanine-cysteine sulfenyl amide cross-link","type":"exact"},{"name":"phenylalanine-cysteine sulphenyl amide cross-link","type":"exact"}],"termid":"MOD:01859"}


id: PBO:0083977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p; involved in removal of two glucose residues from N-linked glycans during glycoprotein biogenesis in the ER; relocalizes from ER to cytoplasm upon DNA replication stress","termid":"PBO:0083977"}


id: PBO:0050084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group AT-hook 1 pseudogene 4","termid":"PBO:0050084"}


id: GO:0035484
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing an A/A mispair.","definition_xrefs":["GOC:jh","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatched DNA binding","termid":"GO:0030983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003677"],"is_obsolete":false,"name":"adenine/adenine mispair binding","synonyms":[{"name":"A/A mispair binding","type":"exact"}],"termid":"GO:0035484"}


id: GO:0110159
data:
  {"annotated_genes":["SJAG_02332"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107580],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110161"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the cell cycle process in which the distance is lengthened between poles of the mitotic spindle during mitotic prophase (spindle phase one).","definition_xrefs":["GOC:vw","PMID:27697865"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic spindle assembly","termid":"GO:1901673"},{"relation_name":"part_of","term_name":"regulation of mitotic spindle elongation","termid":"GO:0032888"},{"relation_name":"regulates","term_name":"mitotic spindle formation (spindle phase one)","termid":"GO:0061804"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02332":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0000226"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0000226","GO:0007049","GO:0044085","GO:0008150","GO:0007010"],"is_obsolete":false,"name":"regulation of mitotic spindle formation (spindle phase one)","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0110159","terms_by_termid":{"GO:0110161":null}}


id: PBO:0076951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transforming growth factor beta 1 induced transcript 1","termid":"PBO:0076951"}


id: PBO:0059218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maestro heat like repeat family member 1","termid":"PBO:0059218"}


id: FYPO:0004169
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell is lower than normal when the population in which the cell is found is in stationary phase. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level","termid":"FYPO:0000826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"decreased RNA level in stationary phase","synonyms":[{"name":"decreased RNA accumulation in stationary phase","type":"related"},{"name":"decreased transcript level in stationary phase","type":"exact"},{"name":"reduced RNA level in stationary phase","type":"exact"}],"termid":"FYPO:0004169"}


id: GO:0110104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of generating multiple mRNA molecules with variable 3'-end length formation from a given pre-mRNA by differential use of cleavage and polyadenylation signals (pA signals).","definition_xrefs":["PMID:28453393","PMID:29276085","GOC:ans"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA 3'-end processing","termid":"GO:0031124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016071","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"mRNA alternative polyadenylation","termid":"GO:0110104"}


id: PBO:0076593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 14","termid":"PBO:0076593"}


id: PBO:0057246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 449c","termid":"PBO:0057246"}


id: PR:Q9P7P0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1718.04 gene.","definition_xrefs":["UniProtKB:Q9P7P0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized acyltransferase C1718.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1718.04","synonyms":[{"name":"Spom972h-SPBC1718.04","type":"exact"}],"termid":"PR:Q9P7P0"}


id: PBO:0045847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 37","termid":"PBO:0045847"}


id: PBO:0079540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like modifier activating enzyme 1","termid":"PBO:0079540"}


id: GO:0050281
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-serine + glyoxylate = 3-hydroxypyruvate + glycine.","definition_xrefs":["EC:2.6.1.45"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016769","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-serine-glyoxylate transaminase activity","secondary_identifiers":["RHEA:19125","MetaCyc:SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN"],"synonyms":[{"name":"L-serine:glyoxylate aminotransferase activity","type":"related"},{"name":"SGAT activity","type":"related"},{"name":"serine--glyoxylate aminotransferase activity","type":"exact"}],"termid":"GO:0050281"}


id: GO:0052681
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (E,R)-alpha-bisabolene + diphosphate.","definition_xrefs":["RHEA:25436"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"alpha-bisabolene synthase activity","secondary_identifiers":["MetaCyc:RXN-8550","KEGG_REACTION:R08370","EC:4.2.3.38"],"synonyms":[{"name":"(2E,6E)-farnesyl-diphosphate diphosphate-lyase [(E)-alpha-bisabolene-forming] activity","type":"exact"},{"name":"bisabolene synthase activity","type":"broad"}],"termid":"GO:0052681"}


id: SO:0000868
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A frameshift caused by inserting one base.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"frameshift","termid":"SO:0000865"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plus_1_frameshift","synonyms":[{"name":"plus 1 frameshift","type":"exact"}],"termid":"SO:0000868"}


id: GO:0014834
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process by which the number of skeletal muscle satellite cells in a skeletal muscle is maintained during muscle regeneration. There are at least three mechanisms by which this is achieved. Skeletal muscle satellite stem cell asymmetric division ensures satellite stem cell numbers are kept constant. Symmetric division of these cells amplifies the number of skeletal muscle satellite stem cells. Some adult skeletal muscle myoblasts (descendants of activated satellite cells) can develop back into quiescent satellite cells, replenishing the overall pool of satellite cells.","definition_xrefs":["GOC:dph","GOC:mtg_muscle","PMID:23303905","GOC:ef","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of cell number","termid":"GO:0098727"},{"relation_name":"part_of","term_name":"skeletal muscle tissue regeneration","termid":"GO:0043403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration","synonyms":[{"name":"satellite cell compartment self-renewal involved in skeletal muscle regeneration","type":"exact"},{"name":"satellite cell population maintenance","type":"exact"},{"name":"satellite cell self-renewal","type":"broad"}],"termid":"GO:0014834"}


id: FYPO:0000856
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome positioning is normal (i.e. indistinguishable from wild type). Nucleosome positioning is the ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another.","definition_xrefs":["GO:0016584","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal nucleosome positioning","synonyms":[{"name":"normal nucleosome occupancy","type":"related"},{"name":"normal nucleosome positioning during mitotic cell cycle","type":"related"},{"name":"normal nucleosome positioning during vegetative growth","type":"exact"},{"name":"normal nucleosome spacing","type":"exact"}],"termid":"FYPO:0000856"}


id: PBO:0012528
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-results_in_specification_of","termid":"PBO:0012528"}


id: GO:0060358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the rate, frequency or extent of L-leucine import. L-leucine import is the directed movement of leucine into a cell or organelle.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of L-leucine import (obsolete GO:0060358)","synonyms":[{"name":"negative regulation of leucine import","type":"broad"}],"termid":"GO:0060358"}


id: PBO:0087737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the SMC5-SMC6 complex; the SMC5-SMC6 complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; homologous to S. pombe rad18","termid":"PBO:0087737"}


id: GO:0014009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of glial cells by cell division, resulting in the expansion of their population. Glial cells exist throughout the nervous system, and include Schwann cells, astrocytes, and oligodendrocytes among others.","definition_xrefs":["GOC:ef","ISBN:0878932585"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"},{"relation_name":"part_of","term_name":"gliogenesis","termid":"GO:0042063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glial cell proliferation","synonyms":[{"name":"glia proliferation","type":"exact"}],"termid":"GO:0014009"}


id: GO:0033449
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a GUU codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0060090","GO:0005488","GO:0003723","GO:0003674"],"is_obsolete":false,"name":"GUU codon-amino acid adaptor activity","synonyms":[{"name":"GTT codon-amino acid adaptor activity","type":"exact"},{"name":"valine tRNA","type":"related"}],"termid":"GO:0033449"}


id: PATO:0001406
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei.","definition_xrefs":["Biology-online:Biology-online"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multinucleate","termid":"PATO:0001908"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binucleate","termid":"PATO:0001406"}


id: PATO:0000784
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000784 excretory function value (obsolete PATO:0000784)","termid":"PATO:0000784"}


id: GO:0047881
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: estradiol-17-alpha + NAD(P)+ = estrone + NAD(P)H + H+.","definition_xrefs":["EC:1.1.1.148"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"estradiol 17-alpha-dehydrogenase [NAD(P)+] activity","secondary_identifiers":["MetaCyc:ESTRADIOL-17-ALPHA-DEHYDROGENASE-RXN"],"synonyms":[{"name":"17alpha-estradiol dehydrogenase activity","type":"related"},{"name":"17alpha-hydroxy steroid dehydrogenase activity","type":"related"},{"name":"17alpha-hydroxy steroid oxidoreductase activity","type":"related"},{"name":"17alpha-hydroxysteroid oxidoreductase activity","type":"related"},{"name":"17alpha-hydroxysteroid:NAD(P)+ 17-oxidoreductase activity","type":"related"},{"name":"estradiol 17a-dehydrogenase activity","type":"exact"},{"name":"estradiol 17alpha-dehydrogenase activity","type":"related"},{"name":"estradiol 17alpha-oxidoreductase activity","type":"related"}],"termid":"GO:0047881"}


id: FYPO:0002549
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_04312:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04312","name":"pka1delta","uniquename":"SJAG_04312:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000087"},{"annotations":[115339,115351],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000726"},{"annotations":[115350,115338],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000271"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which cells in a population show increased sensitivity to a stress. Typically, a cell population is deemed sensitive to a stress if cells in the population stop growing (and may die) when exposed to the stress at an intensity that allows a population of wild type cells to grow and divide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell population growth","termid":"FYPO:0000045"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null,"SJAG_04312":null},"genotype_count":3,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to stress","references_by_uniquename":{"PMID:27678009":null,"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_02592","SJAG_00266","SJAG_04312"],"single_locus_genotype_uniquenames":["atf1delta","sty1delta","pka1delta"],"synonyms":[{"name":"decreased growth during cellular response to stress","type":"exact"},{"name":"decreased vegetative cell population growth during cellular response to stress","type":"exact"},{"name":"hypersensitive to stress","type":"exact"},{"name":"stress resistance: decreased","type":"related"}],"termid":"FYPO:0002549","terms_by_termid":{"FYECO:0000078":null,"FYECO:0000207":null,"FYPO:0000087":null,"FYPO:0000271":null,"FYPO:0000726":null,"FYPO_EXT:0000001":null}}


id: PBO:0083887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ferulic acid decarboxylase; involved in the decarboxylation of aromatic carboxylic acids such as phenylacrylic (cinnamic) acid, ferulic acid and coumaric acid and formation of the corresponding vinyl derivatives; overexpression of both Pad1p and Fdc1p increases decarboxylase activity due to the Pad1p-catalyzed formation of a diffusible cofactor required for Fdc1p activity; homolog of E. coli UbiD; GFP-fusion protein localizes to the cytoplasm in an HTP study","termid":"PBO:0083887"}


id: PBO:0079893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome c reductase complex assembly factor 2","termid":"PBO:0079893"}


id: PBO:0016544
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rer2 can form a catalytically active complex with human DHDS (hCIT)","termid":"PBO:0016544"}


id: PBO:0088580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, glutamate/glycine","termid":"PBO:0088580"}


id: PBO:0001895
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.5.1.18","termid":"PBO:0001895"}


id: GO:0046718
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which a symbiont breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the symbiont or its genome is released into the host cell.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont entry into host","termid":"GO:0044409"},{"relation_name":"part_of","term_name":"viral life cycle","termid":"GO:0019058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont entry into host cell","secondary_identifiers":["GO:0019063","VZ:936"],"synonyms":[{"name":"entry of virus into host cell","type":"narrow"},{"name":"phage translocation","type":"narrow"},{"name":"viral entry into host cell","type":"narrow"},{"name":"viral penetration","type":"narrow"},{"name":"virion penetration","type":"narrow"},{"name":"virion penetration into host cell","type":"narrow"},{"name":"virus entry into host cell","type":"narrow"}],"termid":"GO:0046718"}


id: PBO:0056967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 24-1","termid":"PBO:0056967"}


id: PBO:0073551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHANK2 antisense RNA 3","termid":"PBO:0073551"}


id: GO:0008897
data:
  {"annotated_genes":["SJAG_03180","SJAG_04972","SJAG_01955"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86383,93385,93759],"is_not":false,"summary":null,"term":"GO:0008897"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: CoA + substrate-serine = adenosine 3',5'-bisphosphate + substrate-serine-4'-phosphopantetheine. The transfer of the 4'-phosphopantetheine (Ppant) co-factor from coenzyme A to the hydroxyl side chain of the serine residue of acyl- or peptidyl-carrier protein (ACP or PCP) to convert them from the apo to the holo form.","definition_xrefs":["PMID:11867633","EC:2.7.8.7","PMID:8939709","PMID:10320345"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01955":null,"SJAG_03180":null,"SJAG_04972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016780"],"is_obsolete":false,"name":"holo-[acyl-carrier-protein] synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:12068","GO:0008958","Reactome:R-HSA-199202","MetaCyc:HOLO-ACP-SYNTH-RXN"],"synonyms":[{"name":"4'-phosphopantetheinyl transferase activity","type":"related"},{"name":"4'-phosphopantetheinyltransferase activity","type":"exact"},{"name":"ACPS activity","type":"related"},{"name":"AcpS","type":"related"},{"name":"CoA-[4'-phosphopantetheine]:apo-acyl-carrier-protein 4'-pantetheinephosphotransferase activity","type":"related"},{"name":"CoA:apo-acyl-carrier-protein pantetheinephosphotransferase activity","type":"related"},{"name":"L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase activity","type":"narrow"},{"name":"P-pant transferase activity","type":"related"},{"name":"PPTase activity","type":"related"},{"name":"acyl carrier protein holoprotein (holo-ACP) synthetase activity","type":"related"},{"name":"acyl carrier protein synthase activity","type":"related"},{"name":"acyl carrier protein synthetase activity","type":"related"},{"name":"alpha-aminoadipate reductase phosphopantetheinyl transferase activity","type":"exact"},{"name":"alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase activity","type":"related"},{"name":"alphaaminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase activity","type":"related"},{"name":"coenzyme A:fatty acid synthetase apoenzyme 4'-phosphopantetheine transferase activity","type":"related"},{"name":"holo-ACP synthase activity","type":"related"},{"name":"holo-ACP synthetase activity","type":"related"},{"name":"holo-[peptidyl-carrier protein] synthase activity","type":"narrow"},{"name":"holo-acyl-carrier-protein synthase activity","type":"related"},{"name":"holosynthase activity","type":"related"},{"name":"phosphopantetheinyl transferase","type":"related"},{"name":"phosphopantetheinyltransferase activity","type":"exact"}],"termid":"GO:0008897","terms_by_termid":{"GO:0008897":null}}


id: PBO:0044850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 131E (pseudogene)","termid":"PBO:0044850"}


id: GO:0034849
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-naphthoyl-CoA + OH- = 2-naphthoate + CoASH.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-naphthoate CoA-transferase activity (obsolete GO:0034849)","termid":"GO:0034849"}


id: PBO:0018048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZIP zinc transmembrane transporter Zrt1","termid":"PBO:0018048"}


id: GO:0032824
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell differentiation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of natural killer cell activation","termid":"GO:0032815"},{"relation_name":"is_a","term_name":"regulation of natural killer cell differentiation","termid":"GO:0032823"},{"relation_name":"is_a","term_name":"negative regulation of lymphocyte differentiation","termid":"GO:0045620"},{"relation_name":"negatively_regulates","term_name":"natural killer cell differentiation","termid":"GO:0001779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of natural killer cell differentiation","synonyms":[{"name":"down regulation of natural killer cell differentiation","type":"exact"},{"name":"down-regulation of natural killer cell differentiation","type":"exact"},{"name":"downregulation of natural killer cell differentiation","type":"exact"},{"name":"inhibition of natural killer cell differentiation","type":"narrow"},{"name":"negative regulation of NK cell differentiation","type":"exact"},{"name":"negative regulation of natural killer cell development","type":"related"}],"termid":"GO:0032824"}


id: GO:0102977
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nitrilotriacetate + O2 + FMNH2 = ammoniodiacetate + 2-oxo monocarboxylic acid anion + H2O + FMN.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete nitrilotriacetate monooxygenase activity (FMN-dependent) (obsolete GO:0102977)","termid":"GO:0102977"}


id: PBO:0067588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 749, pseudogene","termid":"PBO:0067588"}


id: FYPO:0004356
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleolus is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to nucleus during vegetative growth","termid":"FYPO:0001130"},{"relation_name":"is_a","term_name":"abnormal protein localization to nucleolus","termid":"FYPO:0003687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased protein localization to nucleolus","synonyms":[{"name":"increased protein localisation to nucleolus","type":"exact"},{"name":"increased protein localization to nucleolus during mitotic cell cycle","type":"related"},{"name":"increased protein localization to nucleolus during vegetative growth","type":"exact"}],"termid":"FYPO:0004356"}


id: PBO:0025530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial iron-sulfur cluster assembly protein Isa2","termid":"PBO:0025530"}


id: GO:0000176
data:
  {"annotated_genes":["SJAG_01521","SJAG_01818","SJAG_04153","SJAG_04321","SJAG_04824","SJAG_03745","SJAG_04084","SJAG_04818","SJAG_04006","SJAG_01191","SJAG_00854","SJAG_01431","SJAG_03179"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[88257,89096,91962,93308,97117,98163,100511,101368,102573,103574,111601,112045,114468],"is_not":false,"summary":null,"term":"GO:0000176"}]},"cv_name":"cellular_component","definition":"A ribonuclease complex that has 3-prime to 5-prime processive and distributive hydrolytic exoribonuclease activity and endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.","definition_xrefs":["PMID:17174896","PMID:20531386","PMID:26726035"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exosome (RNase complex)","termid":"GO:0000178"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nuclear lumen","termid":"GO:0031981"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00854":null,"SJAG_01191":null,"SJAG_01431":null,"SJAG_01521":null,"SJAG_01818":null,"SJAG_03179":null,"SJAG_03745":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04818":null,"SJAG_04824":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"nuclear exosome (RNase complex)","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"eukaryotic exosome multienzyme ribonuclease complex","type":"exact"},{"name":"nuclear exosome (ribonuclease complex)","type":"exact"},{"name":"nuclear exosome multienzyme ribonuclease complex","type":"exact"}],"termid":"GO:0000176","terms_by_termid":{"GO:0000176":null}}


id: PBO:0001590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LAlv9 family protein, involved in post Golgi transport (predicted)","termid":"PBO:0001590"}


id: FYPO:0006854
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing EGTA.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000257","FYPO:0000003","FYPO:0002058","FYPO:0002057","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on EGTA","synonyms":[{"name":"normal vegetative cell population growth on EGTA","type":"exact"},{"name":"normal cell population growth in presence of EGTA","type":"exact"},{"name":"normal cell population growth on EGTA","type":"exact"},{"name":"normal cell population growth on ethylene glycol bis(2-aminoethyl)tetraacetic acid","type":"exact"}],"termid":"FYPO:0006854"}


id: GO:1905438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any non-canonical Wnt signaling pathway that is involved in midbrain dopaminergic neuron differentiation.","definition_xrefs":["GOC:TermGenie","GOC:bc","PMID:25640183","GOC:PARL","GO_REF:0000060"],"gene_count":0,"genotype_count":0,"name":"obsolete non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation (obsolete GO:1905438)","synonyms":[{"name":"beta-catenin-independent Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"beta-catenin-independent Wnt receptor signaling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"beta-catenin-independent Wnt receptor signaling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"beta-catenin-independent Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"beta-catenin-independent Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"non-canonical Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"non-canonical Wnt receptor signaling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"non-canonical Wnt receptor signaling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"non-canonical Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"non-canonical Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"non-canonical Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"non-canonical Wnt receptor signalling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"non-canonical Wnt receptor signalling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"non-canonical Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"non-canonical Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"non-canonical Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"non-canonical Wnt signaling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"non-canonical Wnt signaling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"non-canonical Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"non-canonical Wnt-activated signaling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"non-canonical Wnt-activated signaling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"non-canonical Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"non-canonical Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production","type":"exact"}],"termid":"GO:1905438"}


id: FYPO:0004531
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that is smaller than normal and undergoes one or two rounds of cell division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"small vegetative cell","termid":"FYPO:0000645"},{"relation_name":"is_a","term_name":"small vegetative cell","termid":"FYPO:0000645"},{"relation_name":"is_a","term_name":"inviable after spore germination, single or double cell division","termid":"FYPO:0001042"},{"relation_name":"is_a","term_name":"inviable vegetative cell with abnormal cell morphology","termid":"FYPO:0002273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000004","FYPO:0000002","FYPO:0001320","FYPO:0000005"],"is_obsolete":false,"name":"inviable after spore germination, single or double cell division, small cell","synonyms":[{"name":"inviable after spore germination, single or double cell division, decreased cell size","type":"exact"},{"name":"inviable after spore germination, single or double cell division, reduced cell size","type":"exact"},{"name":"inviable following spore germination, single or double cell division, small cell","type":"exact"},{"name":"inviable germinated spore, single cell or double division, small cell","type":"exact"},{"name":"lethal after spore germination, single or double cell division, small cell","type":"exact"}],"termid":"FYPO:0004531"}


id: GO:1904171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of bleb assembly.","definition_xrefs":["GOC:TermGenie","GOC:als","PMID:25651887","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120033"},{"relation_name":"is_a","term_name":"regulation of bleb assembly","termid":"GO:1904170"},{"relation_name":"negatively_regulates","term_name":"bleb assembly","termid":"GO:0032060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of bleb assembly","synonyms":[{"name":"down regulation of bleb assembly","type":"exact"},{"name":"down regulation of cell blebbing","type":"exact"},{"name":"down-regulation of bleb assembly","type":"exact"},{"name":"down-regulation of cell blebbing","type":"exact"},{"name":"downregulation of bleb assembly","type":"exact"},{"name":"downregulation of cell blebbing","type":"exact"},{"name":"inhibition of bleb assembly","type":"narrow"},{"name":"inhibition of cell blebbing","type":"narrow"},{"name":"negative regulation of cell blebbing","type":"exact"}],"termid":"GO:1904171"}


id: PBO:0000105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparaginase (predicted)","termid":"PBO:0000105"}


id: GO:0010920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of inositol phosphate biosynthesis. Inositol phosphate biosynthetic processes are the chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of inositol phosphate biosynthetic process","termid":"GO:0010919"},{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"negative regulation of carbohydrate metabolic process","termid":"GO:0045912"},{"relation_name":"is_a","term_name":"negative regulation of phosphate metabolic process","termid":"GO:0045936"},{"relation_name":"is_a","term_name":"negative regulation of alcohol biosynthetic process","termid":"GO:1902931"},{"relation_name":"negatively_regulates","term_name":"inositol phosphate biosynthetic process","termid":"GO:0032958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of inositol phosphate biosynthetic process","synonyms":[{"name":"negative regulation of inositol phosphate biosynthesis","type":"exact"}],"termid":"GO:0010920"}


id: PBO:0047775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box C2","termid":"PBO:0047775"}


id: PBO:0045745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous Bornavirus like nucleoprotein 2","termid":"PBO:0045745"}


id: GO:0006149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of deoxyinosine, hypoxanthine deoxyriboside.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyinosine metabolic process","termid":"GO:0046094"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside catabolic process","termid":"GO:0046124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"deoxyinosine catabolic process","synonyms":[{"name":"deoxyinosine breakdown","type":"exact"},{"name":"deoxyinosine catabolism","type":"exact"},{"name":"deoxyinosine degradation","type":"exact"}],"termid":"GO:0006149"}


id: MOD:01925
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to (2S,5R)-5-hydroxylysine.","definition_xrefs":["PubMed:16101297","RESID:AA0028","PubMed:13375629","PubMed:2857489","ChEBI:18040","PubMed:15504407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5-hydroxy-L-lysine","termid":"MOD:00037"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2S,5R)-5-hydroxylysine","synonyms":[{"name":"(2S,5R)-2,6-diamino-5-hydroxyhexanoic acid","type":"exact"},{"name":"(2S,5R)-5-hydroxylysine","type":"exact"},{"name":"2,6-bisazanyl-5-hydroxyhexanoic acid","type":"exact"},{"name":"2,6-diamino-2,3,4,6-tetradeoxyhexonic acid","type":"exact"},{"name":"5-hydroxylated L-lysine","type":"exact"},{"name":"5HyLys","type":"exact"},{"name":"L-erythro-delta-hydroxylysine","type":"exact"},{"name":"MOD_RES (2S,5R)-5-hydroxylysine","type":"exact"},{"name":"alpha,epsilon-diamino-delta-hydroxycaproic acid","type":"exact"}],"termid":"MOD:01925"}


id: PBO:0057122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR205 host gene","termid":"PBO:0057122"}


id: GO:1990976
data:
  {"annotated_genes":["SJAG_01211","SJAG_05266","SJAG_03437","SJAG_01224","SJAG_05319","SJAG_02731","SJAG_00918","SJAG_05220","SJAG_01775","SJAG_01371","SJAG_01546"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85176,85779,87006,92840,94702,96603,103632,105015,106027,110254,113093],"is_not":false,"summary":null,"term":"GO:1990976"}]},"cv_name":"biological_process","definition":"The directed movement of a protein along a microtubule to the mitotic spindle pole body, mediated by motor proteins.","definition_xrefs":["PMID:25987607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to mitotic spindle pole body","termid":"GO:1902440"},{"relation_name":"is_a","term_name":"protein transport along microtubule to spindle pole body","termid":"GO:1990852"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00918":null,"SJAG_01211":null,"SJAG_01224":null,"SJAG_01371":null,"SJAG_01546":null,"SJAG_01775":null,"SJAG_02731":null,"SJAG_03437":null,"SJAG_05220":null,"SJAG_05266":null,"SJAG_05319":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein transport along microtubule to mitotic spindle pole body","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990976","terms_by_termid":{"GO:1990976":null}}


id: PBO:0049105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPR160 pseudogene 2","termid":"PBO:0049105"}


id: FYPO:0003473
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation, producing inviable daughter cells, and in which the septum forms in a position that partitions both nuclei into one compartment, when the cell is subject to salt stress. Cell separation may or may not be completed.","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoseptate vegetative cell with binucleate and anucleate compartments","termid":"FYPO:0003166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"septation following abnormal chromosome segregation, with binucleate and anucleate compartment formation during cellular response to salt stress","synonyms":[{"name":"septation following abnormal chromosome segregation, with anucleate cell formation during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"septation following abnormal chromosome segregation, with anucleate cell formation during cellular response to salt stress during vegetative growth","type":"exact"},{"name":"septation following abnormal chromosome segregation, with binucleate cell formation during cellular response to salt stress","type":"exact"}],"termid":"FYPO:0003473"}


id: PBO:0041536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 17 open reading frame 67","termid":"PBO:0041536"}


id: PBO:0061679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUP93 divergent transcript","termid":"PBO:0061679"}


id: FYPO:0005208
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein does not localize to, and is therefore absent from, a place where it is normally found during the meiotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization","termid":"FYPO:0001375"},{"relation_name":"is_a","term_name":"abnormal protein localization during meiotic cell cycle","termid":"FYPO:0004094"},{"relation_name":"is_a","term_name":"localization phenotype during meiotic cell cycle","termid":"FYPO:0006393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization during meiotic cell cycle","synonyms":[{"name":"abolished protein localisation during meiotic cell cycle","type":"exact"},{"name":"protein absent from specific location in cell during meiotic cell cycle","type":"related"},{"name":"protein localization abolished during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0005208"}


id: GO:0051194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a cofactor.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cofactor metabolic process (obsolete GO:0051194)","synonyms":[{"name":"activation of cofactor metabolic process","type":"narrow"},{"name":"positive regulation of cofactor metabolism","type":"exact"},{"name":"stimulation of cofactor metabolic process","type":"narrow"},{"name":"up regulation of cofactor metabolic process","type":"exact"},{"name":"up-regulation of cofactor metabolic process","type":"exact"},{"name":"upregulation of cofactor metabolic process","type":"exact"}],"termid":"GO:0051194"}


id: PBO:0062640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily K member 1 pseudogene","termid":"PBO:0062640"}


id: PBO:0003085
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae cdc13-1","termid":"PBO:0003085"}


id: PBO:0036371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin Pfl7, DIPSY family","termid":"PBO:0036371"}


id: GO:0007040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lytic vacuole organization","termid":"GO:0080171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lysosome organization","synonyms":[{"name":"lysosome organisation","type":"exact"},{"name":"lysosome organization and biogenesis","type":"related"}],"termid":"GO:0007040"}


id: PBO:0045625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 37 (pseudogene)","termid":"PBO:0045625"}


id: PBO:0003185
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.6.1.2","termid":"PBO:0003185"}


id: GO:0140132
data:
  {"annotated_genes":["SJAG_00532"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88993],"is_not":false,"summary":null,"term":"GO:0140132"}]},"cv_name":"molecular_function","definition":"Binding to an iron-sulfur cluster and delivering it to an acceptor molecule.","definition_xrefs":["PMID:22966982","PMID:29051382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular carrier activity","termid":"GO:0140104"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00532":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140104"}],"interesting_parent_ids":["GO:0003674","GO:0140104"],"is_obsolete":false,"name":"iron-sulfur cluster carrier activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140132","terms_by_termid":{"GO:0140132":null}}


id: FYPO:0005903
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which actomyosin contractile ring contraction begins, but stops before the ring completely constricts and is disassembled.","definition_xrefs":["PMID:19570908","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring contraction","termid":"FYPO:0001364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0004803","FYPO:0000002","FYPO:0000032","FYPO:0001985","FYPO:0001320","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"incomplete actomyosin contractile ring contraction","synonyms":[{"name":"incomplete actomyosin contractile ring contraction during mitotic cell cycle","type":"related"},{"name":"incomplete actomyosin contractile ring contraction during vegetative growth","type":"exact"}],"termid":"FYPO:0005903"}


id: PBO:0042968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain containing 5","termid":"PBO:0042968"}


id: PBO:0042651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y like 2","termid":"PBO:0042651"}


id: GO:0046261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of 4-nitrotoluene, 1-methyl-4-nitrobenzene.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-nitrotoluene biosynthetic process (obsolete GO:0046261)","synonyms":[{"name":"4-nitrotoluene anabolism","type":"exact"},{"name":"4-nitrotoluene biosynthesis","type":"exact"},{"name":"4-nitrotoluene biosynthetic process","type":"exact"},{"name":"4-nitrotoluene formation","type":"exact"},{"name":"4-nitrotoluene synthesis","type":"exact"},{"name":"4NT biosynthesis","type":"exact"},{"name":"4NT biosynthetic process","type":"exact"}],"termid":"GO:0046261"}


id: GO:0030106
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A major histocompatibility complex class I receptor. These display processed antigens from the endocytosed bacteria. MHC class I proteins can form complexes with processed antigen peptides only if the antigen is synthesized in the same cell. As a consequence, T lymphocytes can only bind to class-I-positive cells that are synthesizing the antigen (e.g. virus-infected cells).","definition_xrefs":["ISBN:081533642X","ISBN:0879694971"],"gene_count":0,"genotype_count":0,"name":"obsolete MHC class I receptor activity (obsolete GO:0030106)","synonyms":[{"name":"MHC class I receptor activity","type":"exact"},{"name":"class I major histocompatibility complex antigen","type":"related"},{"name":"major histocompatibility complex class I receptor","type":"exact"}],"termid":"GO:0030106"}


id: PBO:0056244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnesium transporter 1","termid":"PBO:0056244"}


id: GO:0046618
data:
  {"annotated_genes":["SJAG_03951","SJAG_01145","SJAG_03363"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114130,92552,113199],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990961"}]},"cv_name":"biological_process","definition":"The directed movement of a xenobiotic from a cell, into the extracellular region. A xenobiotic is a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.","definition_xrefs":["GOC:krc","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic transport","termid":"GO:0042908"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"},{"relation_name":"is_a","term_name":"export from cell","termid":"GO:0140352"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01145":null,"SJAG_03363":null,"SJAG_03951":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"xenobiotic export from cell","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"drug export","type":"related"},{"name":"xenobiotic export","type":"related"}],"termid":"GO:0046618","terms_by_termid":{"GO:1990961":null}}


id: GO:0006019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group into deoxyribose 5-phosphate to produce deoxyribose bisphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylation","termid":"GO:0016310"},{"relation_name":"is_a","term_name":"deoxyribose 5-phosphate metabolic process","termid":"GO:0046389"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"deoxyribose 5-phosphate phosphorylation","termid":"GO:0006019"}


id: GO:0004395
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: S-adenosyl-L-methionine + 3-hexaprenyl-4,5-dihydroxybenzoate = S-adenosyl-L-homocysteine + 3-hexaprenyl-4-hydroxy-5-methoxybenzoate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete hexaprenyldihydroxybenzoate methyltransferase activity (obsolete GO:0004395)","termid":"GO:0004395"}


id: PBO:0047364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and leucine rich repeat protein 18","termid":"PBO:0047364"}


id: PBO:0061148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinamide nucleotide adenylyltransferase 1","termid":"PBO:0061148"}


id: GO:1904260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of basement membrane assembly involved in embryonic body morphogenesis.","definition_xrefs":["PMID:23940118","GOC:TermGenie","GOC:als","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of extracellular matrix assembly","termid":"GO:1901202"},{"relation_name":"is_a","term_name":"regulation of basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:1904259"},{"relation_name":"negatively_regulates","term_name":"basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:2001197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of basement membrane assembly involved in embryonic body morphogenesis","synonyms":[{"name":"down regulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"down-regulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"downregulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"inhibition of basement membrane assembly involved in embryonic body morphogenesis","type":"narrow"}],"termid":"GO:1904260"}


id: PBO:0043741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 7A2","termid":"PBO:0043741"}


id: PBO:0082588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cis-golgi localized monothiol glutaredoxin; more similar in activity to dithiol than other monothiol glutaredoxins; involved in the oxidative stress response; does not bind metal ions; GRX7 has a paralog, GRX6, that arose from the whole genome duplication","termid":"PBO:0082588"}


id: GO:0061140
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a lung secretory cell. A lung secretory cell is a specialized epithelial cell of the lung that contains large secretory granules in its apical part.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung epithelial cell differentiation","termid":"GO:0060487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lung secretory cell differentiation","termid":"GO:0061140"}


id: GO:0016354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cyclodiene susceptibility/resistance (obsolete GO:0016354)","synonyms":[{"name":"cyclodiene susceptibility/resistance","type":"exact"}],"termid":"GO:0016354"}


id: FYPO:0007239
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the old growing cell tip is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:31719163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to growing cell tip","termid":"FYPO:0003316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to old growing cell tip","synonyms":[{"name":"normal protein localisation to old growing cell tip","type":"exact"},{"name":"normal protein localization to old growing cell end","type":"exact"},{"name":"normal protein localization to old growing cell tip during mitotic cell cycle","type":"related"},{"name":"normal protein localization to old growing cell tip during vegetative growth","type":"exact"}],"termid":"FYPO:0007239"}


id: PBO:0039619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANXA2R overlapping transcript 1","termid":"PBO:0039619"}


id: GO:1901770
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of daunorubicin.","definition_xrefs":["GOC:yaf","GOC:TermGenie","PMID:7601857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide catabolic process","termid":"GO:0030640"},{"relation_name":"is_a","term_name":"aminoglycoside antibiotic catabolic process","termid":"GO:0030649"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"daunorubicin metabolic process","termid":"GO:0044597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044248","GO:0044281"],"is_obsolete":false,"name":"daunorubicin catabolic process","synonyms":[{"name":"daunorubicin breakdown","type":"exact"},{"name":"daunorubicin catabolism","type":"exact"},{"name":"daunorubicin degradation","type":"exact"}],"termid":"GO:1901770"}


id: PBO:0055134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2553","termid":"PBO:0055134"}


id: GO:0002876
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of a chronic inflammatory response to an antigenic stimulus.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of chronic inflammatory response","termid":"GO:0002678"},{"relation_name":"is_a","term_name":"positive regulation of inflammatory response to antigenic stimulus","termid":"GO:0002863"},{"relation_name":"is_a","term_name":"regulation of chronic inflammatory response to antigenic stimulus","termid":"GO:0002874"},{"relation_name":"positively_regulates","term_name":"chronic inflammatory response to antigenic stimulus","termid":"GO:0002439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of chronic inflammatory response to antigenic stimulus","synonyms":[{"name":"activation of chronic inflammatory response to antigenic stimulus","type":"narrow"},{"name":"stimulation of chronic inflammatory response to antigenic stimulus","type":"narrow"},{"name":"up regulation of chronic inflammatory response to antigenic stimulus","type":"exact"},{"name":"up-regulation of chronic inflammatory response to antigenic stimulus","type":"exact"},{"name":"upregulation of chronic inflammatory response to antigenic stimulus","type":"exact"}],"termid":"GO:0002876"}


id: PBO:0030993
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_salt_stress","termid":"PBO:0030993"}


id: PBO:0074388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMG9 nonsense mediated mRNA decay factor","termid":"PBO:0074388"}


id: GO:0031740
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type A cholecystokinin receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cholecystokinin receptor binding","termid":"GO:0031739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type A cholecystokinin receptor binding","synonyms":[{"name":"type A cholecystokinin receptor ligand","type":"narrow"}],"termid":"GO:0031740"}


id: PBO:0070265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U105C small nucleolar","termid":"PBO:0070265"}


id: GO:0110102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a ribulose bisphosphate carboxylase complex.","definition_xrefs":["PMID:29396988","GOC:tb","GOC:krc","PMID:29589905"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"ribulose bisphosphate carboxylase complex assembly","synonyms":[{"name":"RuBisCO assembly","type":"exact"}],"termid":"GO:0110102"}


id: GO:0050415
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-formimidoyl-L-glutamate + H2O = L-glutamate + formamide.","definition_xrefs":["EC:3.5.3.8","RHEA:22492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016810","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"formimidoylglutamase activity","secondary_identifiers":["KEGG_REACTION:R02285","MetaCyc:FORMIMINOGLUTAMASE-RXN"],"synonyms":[{"name":"N-formimidoyl-L-glutamate formimidoylhydrolase activity","type":"related"},{"name":"N-formimino-L-glutamate formiminohydrolase activity","type":"related"},{"name":"N-formiminoglutamate hydrolase activity","type":"related"},{"name":"formiminoglutamase activity","type":"exact"},{"name":"formiminoglutamate hydrolase activity","type":"related"}],"termid":"GO:0050415"}


id: PBO:0090901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane bound O-acyltransferase, MBOAT Ale1","termid":"PBO:0090901"}


id: GO:0044423
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any constituent part of a virion, a complete fully infectious extracellular virus particle.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular_component","termid":"GO:0005575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"virion component","secondary_identifiers":["Wikipedia:Virus","GO:0019012"],"synonyms":[{"name":"complete virus particle","type":"related"},{"name":"virion","type":"related"},{"name":"virion part","type":"exact"}],"termid":"GO:0044423"}


id: FYPO:0005286
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which heterochromatin is assembled over a larger region near the centromere than normal, such that it extends beyond the IRC1L boundary element.","definition_xrefs":["PomBase:mah","PMID:25972440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased spatial extent of centromeric heterochromatin assembly","termid":"FYPO:0004948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000641","FYPO:0000002"],"is_obsolete":false,"name":"heterochromatin assembly beyond boundary element IRC1L","synonyms":[{"name":"heterochromatin assembly beyond boundary element IRC1L during mitotic cell cycle","type":"related"},{"name":"heterochromatin assembly beyond boundary element IRC1L during vegetative growth","type":"exact"},{"name":"heterochromatin formation beyond boundary element IRC1L","type":"exact"}],"termid":"FYPO:0005286"}


id: GO:0010709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a stable duplex DNA that contains one strand from each of the two recombining DNA molecules resulting in the error-free repair of a double-strand break without the exchange of adjacent sequences.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heteroduplex formation","termid":"GO:0030491"},{"relation_name":"part_of","term_name":"double-strand break repair via synthesis-dependent strand annealing","termid":"GO:0045003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006281","GO:0008150","GO:0006310","GO:0006259"],"is_obsolete":false,"name":"heteroduplex formation involved in double-strand break repair via synthesis-dependent strand annealing","termid":"GO:0010709"}


id: GO:0005321
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete high-density lipoprotein (obsolete GO:0005321)","synonyms":[{"name":"HDL","type":"exact"},{"name":"high-density lipoprotein","type":"exact"}],"termid":"GO:0005321"}


id: GO:1902220
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to osmotic stress.","definition_xrefs":["GOC:mtg_apoptosis","GOC:rl","GOC:TermGenie","GOC:BHF","PMID:14569084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intrinsic apoptotic signaling pathway in response to osmotic stress","termid":"GO:1902218"},{"relation_name":"is_a","term_name":"positive regulation of intrinsic apoptotic signaling pathway","termid":"GO:2001244"},{"relation_name":"positively_regulates","term_name":"intrinsic apoptotic signaling pathway in response to osmotic stress","termid":"GO:0008627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of intrinsic apoptotic signaling pathway in response to osmotic stress","synonyms":[{"name":"activation of intrinsic apoptotic signaling pathway in response to osmotic stress","type":"narrow"},{"name":"up regulation of intrinsic apoptotic signaling pathway in response to osmotic stress","type":"exact"},{"name":"up-regulation of intrinsic apoptotic signaling pathway in response to osmotic stress","type":"exact"},{"name":"upregulation of intrinsic apoptotic signaling pathway in response to osmotic stress","type":"exact"}],"termid":"GO:1902220"}


id: PBO:0090623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydantoin racemase family, implicated in amino acid, or derivative metabolism","termid":"PBO:0090623"}


id: PBO:0067801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 103","termid":"PBO:0067801"}


id: PBO:0014590
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rrm-containing protein, isolated from a synthetic lethal Mutant with Nab2","termid":"PBO:0014590"}


id: PBO:0045075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DLGAP2 antisense RNA 1","termid":"PBO:0045075"}


id: PBO:0075921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST13, Hsp70 interacting protein pseudogene 13","termid":"PBO:0075921"}


id: GO:0039512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host protein tyrosine kinase activity.","definition_xrefs":["GOC:bf","GOC:sp"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host protein tyrosine kinase activity (obsolete GO:0039512)","synonyms":[{"name":"down-regulation by virus of host protein tyrosine kinase activity","type":"exact"},{"name":"downregulation by virus of host protein tyrosine kinase activity","type":"exact"},{"name":"inhibition by virus of host protein tyrosine kinase activity","type":"narrow"},{"name":"negative regulation by virus of host protein tyrosine kinase activity","type":"exact"}],"termid":"GO:0039512"}


id: PATO:0002338
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end.","definition_xrefs":["PATOC:DD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lanceolate","termid":"PATO:0001877"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lanceolate-triangular","termid":"PATO:0002338"}


id: PBO:0068386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNF186 antisense RNA 1","termid":"PBO:0068386"}


id: PBO:0049557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B clustered histone 19, pseudogene","termid":"PBO:0049557"}


id: GO:0009629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to abiotic stimulus","termid":"GO:0009628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to gravity","synonyms":[{"name":"response to gravitational stimulus","type":"exact"}],"termid":"GO:0009629"}


id: PBO:0018095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEA/Iml1/Npr2/3 complex subunit Npr3 (predicted)","termid":"PBO:0018095"}


id: PBO:0065555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin E synthase","termid":"PBO:0065555"}


id: PBO:0070030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1327, pseudogene","termid":"PBO:0070030"}


id: PBO:0027247
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_polyadenylated_25S_rRNA_level","termid":"PBO:0027247"}


id: PBO:0058171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4466","termid":"PBO:0058171"}


id: PATO:0000526
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000526 absolute drug sensitivity value (obsolete PATO:0000526)","termid":"PATO:0000526"}


id: PBO:0076321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptoporin","termid":"PBO:0076321"}


id: PBO:0050716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 2","termid":"PBO:0050716"}


id: PBO:0071369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 28","termid":"PBO:0071369"}


id: GO:0070703
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer of two mucus layers secreted by epithelial cells in the colon; the outer mucus layer is loosely packed and can be colonized by bacteria.","definition_xrefs":["PMID:18806221","PMID:19432394","GOC:mah","GOC:mm2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucus layer","termid":"GO:0070701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005575","GO:0005576"],"is_obsolete":false,"name":"outer mucus layer","termid":"GO:0070703"}


id: PBO:0005352
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.4.-","termid":"PBO:0005352"}


id: PBO:0084134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High affinity, broad selectivity, nucleoside/nucleobase transporter; vacuolar membrane localized transporter which may regulate the balance of nicotinamide riboside (NmR) levels between the cytosol and vacuole, contributing to salvage of NmR for use in cytosolic NAD+ synthesis; equilibrative nucleoside transporter (ENT) family member","termid":"PBO:0084134"}


id: PBO:0012591
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"premature initiation of mitosis","termid":"PBO:0012591"}


id: PBO:0064320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid phosphatase related 2","termid":"PBO:0064320"}


id: PBO:0069898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1189, pseudogene","termid":"PBO:0069898"}


id: PBO:0089491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delta-1-pyrroline-5-carboxylate dehydrogenase Put2","termid":"PBO:0089491"}


id: PBO:0086387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative carboxymethylenebutenolidase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDL086W is not an essential gene","termid":"PBO:0086387"}


id: PR:Q9US06
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An RNA polymerase II-associated factor 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00697","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II-associated protein 1 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC664.03","secondary_identifiers":["UniProtKB:Q9US06"],"synonyms":[{"name":"Spom972h-PAF1","type":"exact"}],"termid":"PR:Q9US06"}


id: PR:O42826
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdh1 gene.","definition_xrefs":["UniProtKB:O42826","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein pdh1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.08c","synonyms":[{"name":"Spom972h-pdh1","type":"exact"}],"termid":"PR:O42826"}


id: GO:0099580
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any ion antiporter activity, occurring in the postsynaptic membrane, that is involved in regulation of postsynaptic membrane potential.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"monoatomic ion antiporter activity involved in regulation of postsynaptic membrane potential","synonyms":[{"name":"ion antiporter activity involved in regulation of post-synaptic membrane potential","type":"exact"},{"name":"ion antiporter activity involved in regulation of postsynaptic membrane potential","type":"exact"}],"termid":"GO:0099580"}


id: GO:1990880
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces or removes the toxicity of copper ions in a cell. These include transport of copper cations away from sensitive areas and to compartments or complexes whose purpose is sequestration.","definition_xrefs":["PMID:10369673"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detoxification of copper ion","termid":"GO:0010273"},{"relation_name":"is_a","term_name":"cellular detoxification of metal ion","termid":"GO:0140961"},{"relation_name":"part_of","term_name":"cellular response to copper ion","termid":"GO:0071280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0098754"],"is_obsolete":false,"name":"cellular detoxification of copper ion","termid":"GO:1990880"}


id: PBO:0043712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6B1","termid":"PBO:0043712"}


id: GO:0000334
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxyanthranilate + O2 = cis,cis-2-amino-3-(3-oxoprop-1-enyl)but-2-enedioate + H+.","definition_xrefs":["EC:1.13.11.6","RHEA:17953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-hydroxyanthranilate 3,4-dioxygenase activity","secondary_identifiers":["KEGG_REACTION:R02665","Reactome:R-HSA-71218","MetaCyc:1.13.11.6-RXN","UM-BBD_reactionID:r1027"],"synonyms":[{"name":"3-hydroxyanthranilate oxygenase activity","type":"related"},{"name":"3-hydroxyanthranilate:oxygen 3,4-oxidoreductase (decyclizing)","type":"related"},{"name":"3-hydroxyanthranilic acid dioxygenase activity","type":"related"},{"name":"3-hydroxyanthranilic acid oxygenase activity","type":"related"},{"name":"3-hydroxyanthranilic oxygenase activity","type":"related"},{"name":"3HAO","type":"related"}],"termid":"GO:0000334"}


id: PBO:0051849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iroquois homeobox 4","termid":"PBO:0051849"}


id: PBO:0043329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC like kinase 4","termid":"PBO:0043329"}


id: PBO:0047705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formin like 1","termid":"PBO:0047705"}


id: PBO:0080323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 87 pseudogene","termid":"PBO:0080323"}


id: PBO:0072351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 37","termid":"PBO:0072351"}


id: PBO:0056128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal trafficking regulator","termid":"PBO:0056128"}


id: PBO:0090284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Prp19 complex subunit Prp45","termid":"PBO:0090284"}


id: PATO:0000162
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000162 absolute rate (obsolete PATO:0000162)","termid":"PATO:0000162"}


id: PBO:0077694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine kinase non receptor 2","termid":"PBO:0077694"}


id: GO:1990216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont initiates, promotes, or enhances transcription of genes into mRNA in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:21994350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host transcription","termid":"GO:0052026"},{"relation_name":"positively_regulates","term_name":"DNA-templated transcription","termid":"GO:0006351"},{"relation_name":"regulates","term_name":"DNA-templated transcription","termid":"GO:0006351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0006351","GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated activation of host transcription","synonyms":[{"name":"positive regulation by symbiont of host transcription","type":"exact"}],"termid":"GO:1990216"}


id: PBO:0079453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor suppressor candidate 3","termid":"PBO:0079453"}


id: GO:0072317
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans that contributes to the release of ascospores from the ascus.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete glucan endo-1,3-beta-D-glucosidase activity involved in ascospore release from ascus (obsolete GO:0072317)","termid":"GO:0072317"}


id: PBO:0064016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 50","termid":"PBO:0064016"}


id: FYPO:0002243
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of acid phosphatase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal acid phosphatase activity","termid":"FYPO:0001044"},{"relation_name":"is_a","term_name":"increased phosphatase activity","termid":"FYPO:0004415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000707","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"increased acid phosphatase activity","termid":"FYPO:0002243"}


id: PBO:0056933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1-1","termid":"PBO:0056933"}


id: GO:0007132
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle phase, following prophase I, during which chromosomes become aligned on the equatorial plate of the cell as part of meiosis I.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis I cell cycle phase","termid":"GO:0098764"},{"relation_name":"part_of","term_name":"metaphase","termid":"GO:0051323"},{"relation_name":"part_of","term_name":"meiotic M phase","termid":"GO:0051327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0051327"}],"interesting_parent_ids":["GO:0008150","GO:0051327"],"is_obsolete":false,"name":"meiotic metaphase I","termid":"GO:0007132"}


id: PBO:0071551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 16","termid":"PBO:0071551"}


id: GO:0042455
data:
  {"annotated_genes":["SJAG_01859","SJAG_00134","SJAG_00044","SJAG_03096","SJAG_01070","SJAG_03881","SJAG_00694","SJAG_06634"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046086"},{"annotations":[113016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"},{"annotations":[104631],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006190"},{"annotations":[85808,89796,112005,89573],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006166"},{"annotations":[108064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046132"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside metabolic process","termid":"GO:0009119"},{"relation_name":"is_a","term_name":"nucleoside biosynthetic process","termid":"GO:0009163"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00134":null,"SJAG_00694":null,"SJAG_01070":null,"SJAG_01859":null,"SJAG_03096":null,"SJAG_03881":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"ribonucleoside biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ribonucleoside anabolism","type":"exact"},{"name":"ribonucleoside biosynthesis","type":"exact"},{"name":"ribonucleoside formation","type":"exact"},{"name":"ribonucleoside synthesis","type":"exact"}],"termid":"GO:0042455","terms_by_termid":{"GO:0006166":null,"GO:0006169":null,"GO:0006190":null,"GO:0046086":null,"GO:0046132":null}}


id: GO:0070525
data:
  {"annotated_genes":["SJAG_04367","SJAG_00378","SJAG_04700","SJAG_04182","SJAG_06560","SJAG_02863","SJAG_04113","SJAG_00358","SJAG_02302","SJAG_04201","SJAG_00865","SJAG_00255"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97462],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070901"},{"annotations":[114789,110400],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072670"},{"annotations":[90306,113135],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990799"},{"annotations":[104606,88825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070899"},{"annotations":[97221,100258,112490,95538,94361],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002949"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving tRNA threonylcarbamoyladenosine, a modified nucleoside found in some tRNA molecules.","definition_xrefs":["PMID:19287007","GOC:mah","GOC:imk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA metabolic process","termid":"GO:0006399"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00255":null,"SJAG_00358":null,"SJAG_00378":null,"SJAG_00865":null,"SJAG_02302":null,"SJAG_02863":null,"SJAG_04113":null,"SJAG_04182":null,"SJAG_04201":null,"SJAG_04367":null,"SJAG_04700":null,"SJAG_06560":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0006399","GO:0008150"],"is_obsolete":false,"name":"tRNA threonylcarbamoyladenosine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"t6A metabolic process","type":"exact"},{"name":"t6A metabolism","type":"exact"},{"name":"threonylcarbamoyladenosine metabolism","type":"exact"}],"termid":"GO:0070525","terms_by_termid":{"GO:0002949":null,"GO:0070899":null,"GO:0070901":null,"GO:0072670":null,"GO:1990799":null}}


id: PBO:0003119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H4 variant, CENP-T ortholog (predicted)","termid":"PBO:0003119"}


id: PBO:0069450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 715, pseudogene","termid":"PBO:0069450"}


id: PR:Q9P797
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nup131 gene.","definition_xrefs":["UniProtKB:Q9P797","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin nup131 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP35G2.06c","synonyms":[{"name":"Spom972h-nup131","type":"exact"},{"name":"nuclear pore protein nup131 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P797"}


id: PBO:0110389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSL complex subunit 3B","termid":"PBO:0110389"}


id: PBO:0075247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 17","termid":"PBO:0075247"}


id: GO:0140040
data:
  {"annotated_genes":["SJAG_04885"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106032],"is_not":false,"summary":null,"term":"GO:0140040"}]},"cv_name":"biological_process","definition":"The conversion of polycistronic RNA transcribed from a mitochondrial genome into mono- or bi-cistronic RNAs.","definition_xrefs":["PMID:20211597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polycistronic mRNA processing","termid":"GO:0031426"},{"relation_name":"is_a","term_name":"mitochondrial mRNA processing","termid":"GO:0090615"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04885":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0140053","GO:0016071","GO:0010467"],"is_obsolete":false,"name":"mitochondrial polycistronic RNA processing","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140040","terms_by_termid":{"GO:0140040":null}}


id: PBO:0049922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helicase for meiosis 1","termid":"PBO:0049922"}


id: PATO:0001866
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a polar diameter longer than its equatorial diameter.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Prolate"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spheroid","termid":"PATO:0001865"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolate","secondary_identifiers":["Image:http\\://upload.wikimedia.org/wikipedia/commons/8/88/ProlateSpheroid.png"],"synonyms":[{"name":"prolate spheroid","type":"related"}],"termid":"PATO:0001866"}


id: GO:0006074
data:
  {"annotated_genes":["SJAG_00876","SJAG_03705","SJAG_01290","SJAG_04483","SJAG_02222","SJAG_04668","SJAG_01787","SJAG_00610","SJAG_05285","SJAG_01288","SJAG_04462","SJAG_04666","SJAG_04771","SJAG_01835","SJAG_00218","SJAG_03587"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90504],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[111985,87607,87618,105434,84103,102216,103905,109319],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[88439],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0060635"},{"annotations":[88443,83556],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[88428,86801,88445,98949,101461,114087],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090334"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucan metabolic process","termid":"GO:0051273"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00218":null,"SJAG_00610":null,"SJAG_00876":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01787":null,"SJAG_01835":null,"SJAG_02222":null,"SJAG_03587":null,"SJAG_03705":null,"SJAG_04462":null,"SJAG_04483":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"(1->3)-beta-D-glucan metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"1,3-beta-D-glucan metabolic process","type":"broad"},{"name":"1,3-beta-D-glucan metabolism","type":"exact"},{"name":"1,3-beta-glucan metabolic process","type":"broad"},{"name":"beta-1,3 glucan metabolic process","type":"exact"},{"name":"beta-1,3 glucan metabolism","type":"exact"}],"termid":"GO:0006074","terms_by_termid":{"GO:0034413":null,"GO:0060635":null,"GO:0071970":null,"GO:0090334":null,"GO:0140748":null}}


id: PBO:0042097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 169","termid":"PBO:0042097"}


id: PBO:0062805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxysterol binding protein like 5","termid":"PBO:0062805"}


id: SO:0001856
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter element with consensus sequence CCAAT, bound by a protein complex that represses transcription in response to low iron levels.","definition_xrefs":["PMID:16963626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT_motif","synonyms":[{"name":"CCAAT motif","type":"exact"}],"termid":"SO:0001856"}


id: GO:0050736
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a malonyl group to an oxygen atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"},{"relation_name":"is_a","term_name":"malonyltransferase activity","termid":"GO:0016420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"O-malonyltransferase activity","termid":"GO:0050736"}


id: PBO:0089708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated WD repeat protein Utp15","termid":"PBO:0089708"}


id: SO:0000881
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA_attribute","termid":"SO:0000863"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recoded","termid":"SO:0000881"}


id: PBO:0047053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 114 member A1","termid":"PBO:0047053"}


id: GO:1902661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glucose mediated signaling pathway.","definition_xrefs":["GO_REF:0000058","PMID:24277933","GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of glucose mediated signaling pathway","termid":"GO:1902659"},{"relation_name":"positively_regulates","term_name":"glucose mediated signaling pathway","termid":"GO:0010255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of glucose mediated signaling pathway","synonyms":[{"name":"activation of glucose mediated signaling pathway","type":"narrow"},{"name":"activation of glucose mediated signalling","type":"narrow"},{"name":"positive regulation of glucose mediated signalling","type":"exact"},{"name":"up regulation of glucose mediated signaling pathway","type":"exact"},{"name":"up regulation of glucose mediated signalling","type":"exact"},{"name":"up-regulation of glucose mediated signaling pathway","type":"exact"},{"name":"up-regulation of glucose mediated signalling","type":"exact"},{"name":"upregulation of glucose mediated signaling pathway","type":"exact"},{"name":"upregulation of glucose mediated signalling","type":"exact"}],"termid":"GO:1902661"}


id: PBO:0042938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroadherin like","termid":"PBO:0042938"}


id: GO:0061448
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of a connective tissue over time, from its formation to the mature structure.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"connective tissue development","termid":"GO:0061448"}


id: GO:0102185
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4alpha-hydroxymethyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol + NADH(2-) + O2 + H+ = 4alpha-formyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol + NAD(1-) + 2 H2O.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 4alpha-hydroxymethyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-cholest-24-en-3beta-ol-4alpha-methyl oxidase activity (obsolete GO:0102185)","termid":"GO:0102185"}


id: PBO:0055067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2483","termid":"PBO:0055067"}


id: PBO:0058641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6770-3","termid":"PBO:0058641"}


id: GO:0170008
data:
  {"annotated_genes":["SJAG_01746","SJAG_05694","SJAG_02638"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87350,106021,108307],"is_not":false,"summary":null,"term":"GO:0170008"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of mRNA phosphatase.","definition_xrefs":["PMID:22323607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01746":null,"SJAG_02638":null,"SJAG_05694":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0140677","GO:0098772","GO:0030234","GO:0003674"],"is_obsolete":false,"name":"mRNA phosphatase activator activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0170008","terms_by_termid":{"GO:0170008":null}}


id: GO:0008990
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N2-methylguanine.","definition_xrefs":["PMID:17389639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methyltransferase activity","termid":"GO:0008170"},{"relation_name":"is_a","term_name":"rRNA (guanine) methyltransferase activity","termid":"GO:0016435"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0140098","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"rRNA (guanine-N2-)-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R07234"],"synonyms":[{"name":"S-adenosyl-L-methionine:rRNA (guanine-2-N-)-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:rRNA (guanine-N2-)-methyltransferase activity","type":"related"},{"name":"ribosomal ribonucleate guanine-2-methyltransferase activity","type":"related"}],"termid":"GO:0008990"}


id: PBO:0081335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 134","termid":"PBO:0081335"}


id: PBO:0027725
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_vacuole_fusion","termid":"PBO:0027725"}


id: GO:0051356
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events during equilibrioception required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual input plays an important role in the ability of an organism to perceive its orientation with respect to gravity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"visual perception","termid":"GO:0007601"},{"relation_name":"part_of","term_name":"equilibrioception","termid":"GO:0050957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"visual perception involved in equilibrioception","synonyms":[{"name":"equilibrioception by visual perception","type":"narrow"},{"name":"perception of orientation with respect to gravity by visual perception","type":"exact"},{"name":"visual perception during equilibrioception","type":"related"}],"termid":"GO:0051356"}


id: GO:0014872
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process resulting in the physical partitioning and separation of a myoblast into daughter cells. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["GOC:mtg_muscle","CL:0000056","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell division","termid":"GO:0051301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast division","termid":"GO:0014872"}


id: MOD:00493
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with a formyl group.","definition_xrefs":["DeltaMass:0","PubMed:15799070","Unimod:122"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylated residue","termid":"MOD:00649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"formylated residue","synonyms":[{"name":"FoRes","type":"exact"},{"name":"Formyl","type":"related"},{"name":"Formylation","type":"related"},{"name":"Formylation (CHO)","type":"exact"}],"termid":"MOD:00493"}


id: PBO:0070604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 72","termid":"PBO:0070604"}


id: SO:1000030
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An interchromosomal mutation where a region of the chromosome is inverted with respect to wild type.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"inversion","termid":"SO:1000036"},{"relation_name":"is_a","term_name":"intrachromosomal_mutation","termid":"SO:1000028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosomal_inversion","secondary_identifiers":["http://en.wikipedia.org/wiki/Chromosomal_inversion"],"synonyms":[{"name":"(Drosophila)In","type":"related"},{"name":"(bacteria)IN","type":"related"},{"name":"(fungi)In","type":"related"},{"name":"chromosomal inversion","type":"exact"}],"termid":"SO:1000030"}


id: MOD:00619
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because entry 300 is redundant with Unimod 6 remap to MOD:01328","definition_xrefs":["Unimod:300"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00619 hydroxylethanone (obsolete MOD:00619)","termid":"MOD:00619"}


id: PBO:0073015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium channel epithelial 1 subunit delta","termid":"PBO:0073015"}


id: GO:0044578
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathway resulting in the formation of butyryl-CoA.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid biosynthetic process","termid":"GO:0006633"},{"relation_name":"is_a","term_name":"fatty-acyl-CoA biosynthetic process","termid":"GO:0046949"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0006629","GO:0044281","GO:0006790"],"is_obsolete":false,"name":"butyryl-CoA biosynthetic process","synonyms":[{"name":"butyryl-CoA biosynthesis","type":"exact"}],"termid":"GO:0044578"}


id: PBO:0060491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nanos C2HC-type zinc finger 2","termid":"PBO:0060491"}


id: PomGeneEx:0000002
data:
  {"annotated_genes":["SJAG_00118","SJAG_01143"],"annotation_feature_type":"gene","cv_annotations":{"qualitative_gene_expression":[{"annotations":[115609,115628],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"PomGeneEx:0000011"}]},"cv_name":"PomGeneEx","definition":"A gene expression qualifier that indicates that an RNA or protein is present at a higher level or produced at a faster rate under one set of conditions or at one indicated time than otherwise.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression qualifier","termid":"PomGeneEx:0000001"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00118":null,"SJAG_01143":null},"genotype_count":0,"is_obsolete":false,"name":"increased","references_by_uniquename":{"PMID:25866389":null},"synonyms":[{"name":"gene expression increased","type":"exact"},{"name":"gene product level increased","type":"exact"}],"termid":"PomGeneEx:0000002","terms_by_termid":{"GO:0000087":null,"PomGeneEx:0000011":null}}


id: PBO:0050921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IFITM3 pseudogene 4","termid":"PBO:0050921"}


id: PBO:0046067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 subunit K pseudogene 2","termid":"PBO:0046067"}


id: GO:0006088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete acetate to acetyl-CoA (obsolete GO:0006088)","synonyms":[{"name":"acetate to acetyl-CoA","type":"exact"}],"termid":"GO:0006088"}


id: GO:1900342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of methane biosynthetic process from dimethyl sulfide.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sulfur metabolic process","termid":"GO:0042762"},{"relation_name":"is_a","term_name":"regulation of cellular respiration","termid":"GO:0043457"},{"relation_name":"is_a","term_name":"regulation of alkane biosynthetic process","termid":"GO:1901577"},{"relation_name":"regulates","term_name":"methane biosynthetic process from dimethyl sulfide","termid":"GO:2001131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0008150","GO:0006091"],"is_obsolete":false,"name":"regulation of methane biosynthetic process from dimethyl sulfide","termid":"GO:1900342"}


id: GO:2000058
data:
  {"annotated_genes":["SJAG_00052","SJAG_03699","SJAG_02723","SJAG_01210","SJAG_00071","SJAG_03048","SJAG_02485","SJAG_00642","SJAG_00475"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905785"},{"annotations":[103071,86431],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032435"},{"annotations":[84979],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905786"},{"annotations":[102770,107861,113250,98478,105023],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032436"},{"annotations":[110783],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032434"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ubiquitin-dependent protein catabolic process.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"is_a","term_name":"regulation of proteolysis involved in protein catabolic process","termid":"GO:1903050"},{"relation_name":"regulates","term_name":"ubiquitin-dependent protein catabolic process","termid":"GO:0006511"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00052":null,"SJAG_00071":null,"SJAG_00475":null,"SJAG_00642":null,"SJAG_01210":null,"SJAG_02485":null,"SJAG_02723":null,"SJAG_03048":null,"SJAG_03699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ubiquitin-dependent protein catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein breakdown","type":"related"},{"name":"regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein catabolic process","type":"related"},{"name":"regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein catabolism","type":"related"},{"name":"regulation of myofibrillar protein ubiquitination during ubiquitin-dependent protein degradation","type":"related"},{"name":"regulation of protein degradation tagging activity","type":"related"},{"name":"regulation of protein ubiquitination during ubiquitin-dependent protein breakdown","type":"exact"},{"name":"regulation of protein ubiquitination during ubiquitin-dependent protein catabolic process","type":"related"},{"name":"regulation of protein ubiquitination during ubiquitin-dependent protein catabolism","type":"exact"},{"name":"regulation of protein ubiquitination during ubiquitin-dependent protein degradation","type":"exact"},{"name":"regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process","type":"narrow"},{"name":"regulation of protein ubiquitinylation during ubiquitin-dependent protein catabolic process","type":"exact"},{"name":"regulation of protein ubiquitinylation during ubiquitin-dependent protein catabolism","type":"exact"},{"name":"regulation of protein ubiquitylation during ubiquitin-dependent protein catabolic process","type":"exact"},{"name":"regulation of protein ubiquitylation during ubiquitin-dependent protein catabolism","type":"exact"}],"termid":"GO:2000058","terms_by_termid":{"GO:0032434":null,"GO:0032435":null,"GO:0032436":null,"GO:1905785":null,"GO:1905786":null}}


id: GO:0035849
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the nephric duct grows along its axis. A nephric duct is a tube that drains a primitive kidney.","definition_xrefs":["PMID:16216236","GOC:mtg_kidney_jan10","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"},{"relation_name":"part_of","term_name":"nephric duct morphogenesis","termid":"GO:0072178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nephric duct elongation","termid":"GO:0035849"}


id: PBO:0074227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 46 member 1","termid":"PBO:0074227"}


id: PR:Q9US27
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vps66 gene.","definition_xrefs":["UniProtKB:Q9US27","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophosphatidic acid:oleoyl-CoA acyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1783.02c","synonyms":[{"name":"LPAAT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-vps66","type":"exact"},{"name":"lysophosphatidic acid acyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar protein sorting-associated protein 66 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9US27"}


id: GO:0043323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of natural killer cell degranulation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte degranulation","termid":"GO:0043302"},{"relation_name":"is_a","term_name":"regulation of natural killer cell degranulation","termid":"GO:0043321"},{"relation_name":"is_a","term_name":"positive regulation of natural killer cell mediated cytotoxicity","termid":"GO:0045954"},{"relation_name":"positively_regulates","term_name":"natural killer cell degranulation","termid":"GO:0043320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"positive regulation of natural killer cell degranulation","synonyms":[{"name":"activation of natural killer cell degranulation","type":"narrow"},{"name":"positive regulation of NK cell degranulation","type":"exact"},{"name":"positive regulation of NK cell granule exocytosis","type":"exact"},{"name":"positive regulation of natural killer cell granule exocytosis","type":"exact"},{"name":"stimulation of natural killer cell degranulation","type":"narrow"},{"name":"up regulation of natural killer cell degranulation","type":"exact"},{"name":"up-regulation of natural killer cell degranulation","type":"exact"},{"name":"upregulation of natural killer cell degranulation","type":"exact"}],"termid":"GO:0043323"}


id: GO:1901588
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any microtubule in a dendrite, a neuron projection.","definition_xrefs":["GOC:TermGenie","NIF_Subcellular:sao110773650"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule","termid":"GO:0005874"},{"relation_name":"part_of","term_name":"dendrite","termid":"GO:0030425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0005575","GO:0015630"],"is_obsolete":false,"name":"dendritic microtubule","synonyms":[{"name":"microtubule of dendrite","type":"exact"},{"name":"microtubulus of dendrite","type":"exact"}],"termid":"GO:1901588"}


id: GO:0140025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The initial, indirect interaction between a contractile vacuole membrane and a site of discharge in the plasma membrane. This interaction is mediated by tethering factors (or complexes), which interact with both membranes. Interaction can occur via direct binding to membrane phospholipids or membrane proteins, or via binding to vesicle coat proteins. This process is distinct from and prior to docking and fusion.","definition_xrefs":["PMID:22323285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle targeting","termid":"GO:0006903"},{"relation_name":"is_a","term_name":"vesicle tethering involved in exocytosis","termid":"GO:0090522"},{"relation_name":"part_of","term_name":"contractile vacuole discharge","termid":"GO:0070177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"contractile vacuole tethering involved in discharge","synonyms":[{"name":"contractile vacuole tethering to plasma membrane","type":"narrow"}],"termid":"GO:0140025"}


id: PBO:0063359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Purkinje cell protein 4 like 1","termid":"PBO:0063359"}


id: PBO:0075377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRY-box transcription factor 14","termid":"PBO:0075377"}


id: GO:1903238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of leukocyte tethering or rolling.","definition_xrefs":["GOC:als","GO_REF:0000058","PMID:18308860","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte tethering or rolling","termid":"GO:1903236"},{"relation_name":"is_a","term_name":"positive regulation of leukocyte adhesion to vascular endothelial cell","termid":"GO:1904996"},{"relation_name":"positively_regulates","term_name":"leukocyte tethering or rolling","termid":"GO:0050901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of leukocyte tethering or rolling","synonyms":[{"name":"activation of leukocyte tethering or rolling","type":"narrow"},{"name":"up regulation of leukocyte tethering or rolling","type":"exact"},{"name":"up-regulation of leukocyte tethering or rolling","type":"exact"},{"name":"upregulation of leukocyte tethering or rolling","type":"exact"}],"termid":"GO:1903238"}


id: PBO:0046712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EVA1A antisense RNA","termid":"PBO:0046712"}


id: PBO:0062703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily F member 2","termid":"PBO:0062703"}


id: PBO:0044329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 10","termid":"PBO:0044329"}


id: PBO:0024810
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-causally_influenced_by","termid":"PBO:0024810"}


id: FYPO:0002864
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of 5-fluoroorotic acid than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0000139","FYPO:0002682","FYPO:0001985"],"is_obsolete":false,"name":"resistance to 5-fluoroorotic acid","synonyms":[{"name":"resistance to 5-FOA","type":"exact"},{"name":"resistance to 5-fluoroorotic acid during mitotic cell cycle","type":"related"},{"name":"resistance to 5-fluoroorotic acid during vegetative growth","type":"exact"},{"name":"resistant to 5-fluoroorotic acid","type":"exact"}],"termid":"FYPO:0002864"}


id: GO:0102563
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: aurachin C + O2 + H+ + NAD(P)H = aurachin C epoxide + H2O + NAD(P).","definition_xrefs":["EC:1.14.13.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"aurachin C monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-15029"],"termid":"GO:0102563"}


id: PBO:0088711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIID complex subunit 8","termid":"PBO:0088711"}


id: FYPO:0004381
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the attachment of spindle microtubules to the kinetochore during a mitotic nuclear division results in the connection of a single kinetochore to both spindle poles.","definition_xrefs":["PomBase:mah","PMID:17426725","PMID:21306900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"merotelic kinetochore attachment","termid":"FYPO:0002651"},{"relation_name":"is_a","term_name":"abnormal attachment of mitotic spindle microtubules to kinetochore","termid":"FYPO:0004213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0000337","FYPO:0001320","FYPO:0000641","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"merotelic kinetochore attachment during mitosis","synonyms":[{"name":"merotelic attachment of spindle microtubules to kinetochore during mitosis","type":"exact"},{"name":"merotelic kinetochore attachment during mitotic M phase","type":"related"},{"name":"merotelic kinetochore attachment during mitotic nuclear division","type":"exact"}],"termid":"FYPO:0004381"}


id: PBO:0027781
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_dephosphorylation","termid":"PBO:0027781"}


id: GO:0060489
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a lung bud bifurcates parallel to the plane of the previous bud.","definition_xrefs":["GOC:dph","GOC:mtg_lung"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dichotomous subdivision of terminal units involved in lung branching","termid":"GO:0060448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"planar dichotomous subdivision of terminal units involved in lung branching morphogenesis","termid":"GO:0060489"}


id: PBO:0026691
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_tamoxifen","termid":"PBO:0026691"}


id: FYPO:0000425
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of endocytosis is increased. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endocytosis during vegetative growth","termid":"FYPO:0000034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased endocytosis during vegetative growth","synonyms":[{"name":"endocytosis: increased during vegetative growth","type":"related"},{"name":"increased actin-mediated endocytosis during vegetative growth","type":"exact"},{"name":"increased endocytosis during mitotic cell cycle","type":"related"},{"name":"increased protein internalization during vegetative growth","type":"narrow"}],"termid":"FYPO:0000425"}


id: PBO:0079012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Thr (anticodon TGT) 6-1","termid":"PBO:0079012"}


id: GO:0090703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process by which a three-stranded D-loop DNA is unwound or 'melted'.","definition_xrefs":["PMID:26503245"],"gene_count":0,"genotype_count":0,"name":"obsolete triplex DNA unwinding (obsolete GO:0090703)","termid":"GO:0090703"}


id: PR:O59744
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC530.08 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59744"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C530.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC530.08","synonyms":[{"name":"Spom972h-SPBC530.08","type":"exact"}],"termid":"PR:O59744"}


id: GO:1904399
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to heparan sulfate.","definition_xrefs":["GO_REF:0000067","PMID:8567685","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosaminoglycan binding","termid":"GO:0005539"},{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"},{"relation_name":"is_a","term_name":"sulfur compound binding","termid":"GO:1901681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"heparan sulfate binding","termid":"GO:1904399"}


id: GO:0002056
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to cytosine.","definition_xrefs":["GOC:vw","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase binding","termid":"GO:0002061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"cytosine binding","termid":"GO:0002056"}


id: GO:0140789
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a phosphorylated histone + H2O = a protein + phosphate.","definition_xrefs":["PMID:19351884"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoprotein phosphatase activity","termid":"GO:0004721"},{"relation_name":"is_a","term_name":"histone modifying activity","termid":"GO:0140993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0004721","GO:0016788","GO:0003824","GO:0016787","GO:0140096"],"is_obsolete":false,"name":"histone phosphatase activity","termid":"GO:0140789"}


id: GO:0048162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The stage in oogenesis when many layers of follicle cells surround the oocyte. There is a yolk nucleus (Balbiani's Body) near the germinal vesicle.","definition_xrefs":["GOC:jid","GOC:mtg_sensu","ISBN:0198542771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mammalian oogenesis stage","termid":"GO:0022605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multi-layer follicle stage","synonyms":[{"name":"mammalian oogenesis stage 5","type":"exact"}],"termid":"GO:0048162"}


id: PBO:0092029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Valine (uac), mitochondrial","termid":"PBO:0092029"}


id: PBO:0056632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 12","termid":"PBO:0056632"}


id: GO:0005595
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen homotrimer of alpha1(XII) chains; type XII collagen triple helices may link sheet-forming or fibrillar collagens to other structures.","definition_xrefs":["ISBN:0721639976"],"direct_ancestors":[{"relation_name":"is_a","term_name":"FACIT collagen trimer","termid":"GO:0005593"},{"relation_name":"is_a","term_name":"anchoring collagen complex","termid":"GO:0030934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"collagen type XII trimer","termid":"GO:0005595"}


id: PBO:0083687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Enolase I, a phosphopyruvate hydratase; catalyzes conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression repressed in response to glucose; protein abundance increases in response to DNA replication stress; N-terminally propionylated in vivo; ENO1 has a paralog, ENO2, that arose from the whole genome duplication","termid":"PBO:0083687"}


id: PBO:0045242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C21","termid":"PBO:0045242"}


id: GO:0140862
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a ubiquitin molecule to histone 2A at the lysine-119 residue.","definition_xrefs":["PMID:22844243","PMID:28624371","PMID:25470042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A ubiquitin ligase activity","termid":"GO:0141053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0004842"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0019787","GO:0003674","GO:0016746","GO:0004842","GO:0016740","GO:0003824","GO:0140096"],"is_obsolete":false,"name":"histone H2AK119 ubiquitin ligase activity","secondary_identifiers":["KEGG_REACTION:R03876"],"synonyms":[{"name":"histone H2A-K119 ubiquitin ligase activity","type":"exact"},{"name":"histone ubiquitin ligase activity (H2A-K119 specific)","type":"exact"}],"termid":"GO:0140862"}


id: GO:1900482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of diacylglycerol biosynthetic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular biosynthetic process","termid":"GO:0031328"},{"relation_name":"is_a","term_name":"positive regulation of lipid biosynthetic process","termid":"GO:0046889"},{"relation_name":"is_a","term_name":"regulation of diacylglycerol biosynthetic process","termid":"GO:1900480"},{"relation_name":"positively_regulates","term_name":"diacylglycerol biosynthetic process","termid":"GO:0006651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of diacylglycerol biosynthetic process","synonyms":[{"name":"activation of diacylglycerol anabolism","type":"exact"},{"name":"activation of diacylglycerol biosynthesis","type":"exact"},{"name":"activation of diacylglycerol biosynthetic process","type":"narrow"},{"name":"activation of diacylglycerol formation","type":"exact"},{"name":"activation of diacylglycerol synthesis","type":"exact"},{"name":"positive regulation of diacylglycerol anabolism","type":"exact"},{"name":"positive regulation of diacylglycerol biosynthesis","type":"exact"},{"name":"positive regulation of diacylglycerol formation","type":"exact"},{"name":"positive regulation of diacylglycerol synthesis","type":"exact"},{"name":"up regulation of diacylglycerol anabolism","type":"exact"},{"name":"up regulation of diacylglycerol biosynthesis","type":"exact"},{"name":"up regulation of diacylglycerol biosynthetic process","type":"exact"},{"name":"up regulation of diacylglycerol formation","type":"exact"},{"name":"up regulation of diacylglycerol synthesis","type":"exact"},{"name":"up-regulation of diacylglycerol anabolism","type":"exact"},{"name":"up-regulation of diacylglycerol biosynthesis","type":"exact"},{"name":"up-regulation of diacylglycerol biosynthetic process","type":"exact"},{"name":"up-regulation of diacylglycerol formation","type":"exact"},{"name":"up-regulation of diacylglycerol synthesis","type":"exact"},{"name":"upregulation of diacylglycerol anabolism","type":"exact"},{"name":"upregulation of diacylglycerol biosynthesis","type":"exact"},{"name":"upregulation of diacylglycerol biosynthetic process","type":"exact"},{"name":"upregulation of diacylglycerol formation","type":"exact"},{"name":"upregulation of diacylglycerol synthesis","type":"exact"}],"termid":"GO:1900482"}


id: GO:0052781
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any chitobiose, a family of compounds derived from chitin and based on the structure of D-glucosaminyl-(1->4)-D-glucosamine.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chitobiose metabolic process","termid":"GO:0052780"},{"relation_name":"is_a","term_name":"amino disaccharide catabolic process","termid":"GO:0052782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chitobiose catabolic process","termid":"GO:0052781"}


id: PBO:0060692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A3","termid":"PBO:0060692"}


id: FYPO:0006903
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the total amount of protein measured in a cell is lower than normal during S phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah","PomBase:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased total protein level during vegetative growth","termid":"FYPO:0006846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"decreased total protein level during mitotic S phase","synonyms":[{"name":"decreased total protein accumulation during mitotic S phase","type":"related"},{"name":"decreased total protein content during mitotic S phase","type":"exact"},{"name":"decreased total protein level during S phase of mitotic cell cycle","type":"exact"},{"name":"reduced total protein level during mitotic S phase","type":"exact"}],"termid":"FYPO:0006903"}


id: PBO:0055997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSM1 homolog, mRNA degradation associated","termid":"PBO:0055997"}


id: GO:0003878
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + ADP + H+ + oxaloacetate + phosphate = ATP + citrate + CoA.","definition_xrefs":["RHEA:21160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, acyl groups converted into alkyl on transfer","termid":"GO:0046912"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"ATP citrate synthase activity","secondary_identifiers":["EC:2.3.3.8","MetaCyc:ATP-CITRATE-PRO-S--LYASE-RXN","MetaCyc:PWY-5172","Reactome:R-HSA-75848","KEGG_REACTION:R00352","GO:0046913"],"synonyms":[{"name":"ATP citrate (pro-S)-lyase activity","type":"related"},{"name":"ATP-citrate (pro-S)-lyase activity","type":"exact"},{"name":"ATP-citrate (pro-S-)-lyase activity","type":"related"},{"name":"ATP-citric lyase activity","type":"related"},{"name":"ATP:citrate oxaloacetate-lyase ((pro-S)-CH(2)COO(-)->acetyl-CoA) (ATP- dephosphorylating) activity","type":"related"},{"name":"ATP:citrate oxaloacetate-lyase [(pro-S)-CH2COO-rightacetyl-CoA] (ATP-dephosphorylating)","type":"related"},{"name":"acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]","type":"related"},{"name":"acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP- phosphorylating) activity","type":"related"},{"name":"acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP-phosphorylating)","type":"related"},{"name":"adenosine triphosphate citrate lyase activity","type":"related"},{"name":"citrate cleavage enzyme activity","type":"related"},{"name":"citrate-ATP lyase activity","type":"related"},{"name":"citric cleavage enzyme activity","type":"related"}],"termid":"GO:0003878"}


id: PR:O74852
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC18.02 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74852"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized MFS-type transporter C18.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18.02","synonyms":[{"name":"Spom972h-SPCC18.02","type":"exact"}],"termid":"PR:O74852"}


id: GO:0014073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tropane stimulus. Tropane is a nitrogenous bicyclic organic compound mainly known for a group of alkaloids derived from it (called tropane alkaloids), which include, among others, atropine and cocaine.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to organic cyclic compound","termid":"GO:0014070"},{"relation_name":"is_a","term_name":"response to alkaloid","termid":"GO:0043279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to tropane","termid":"GO:0014073"}


id: PBO:0000266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, poly(A)-bearing (predicted)","termid":"PBO:0000266"}


id: PBO:0052994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laminin subunit alpha 5","termid":"PBO:0052994"}


id: GO:0033295
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to hydroxyectoine.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid binding","termid":"GO:0033293"},{"relation_name":"is_a","term_name":"alcohol binding","termid":"GO:0043178"},{"relation_name":"is_a","term_name":"quaternary ammonium group binding","termid":"GO:0050997"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"hydroxyectoine binding","termid":"GO:0033295"}


id: PBO:0089806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin-related substrate adaptor Any2","termid":"PBO:0089806"}


id: FYPO:0008123
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in the population remains viable after entering stationary phase, when cells the population are subject to phosphate starvation.","definition_xrefs":["PMID:36794724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"loss of viability in stationary phase","termid":"FYPO:0000245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"loss  of viability in stationary phase upon phopshate starvation","synonyms":[{"name":"decreased chronological lifespan of phosphate-starved cells","type":"exact"}],"termid":"FYPO:0008123"}


id: PBO:0030983
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_dimethylation_at_centromere","termid":"PBO:0030983"}


id: PBO:0048634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein alpha 3","termid":"PBO:0048634"}


id: PBO:0038844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase with thrombospondin type 1 motif 13","termid":"PBO:0038844"}


id: PBO:0047944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, folic acid type, rare, fra(16)(p13.11)","termid":"PBO:0047944"}


id: PBO:0085007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Negative regulator of the glucose-sensing signal transduction pathway; required for repression of transcription by Rgt1p; interacts with Rgt1p and the Snf3p and Rgt2p glucose sensors; phosphorylated by Yck1p, triggering Mth1p degradation; MTH1 has a paralog, STD1, that arose from the whole genome duplication","termid":"PBO:0085007"}


id: GO:0035106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Learning to anticipate future events on the basis of past experience with the consequences of one's own behavior.","definition_xrefs":["PMID:14662373"],"direct_ancestors":[{"relation_name":"is_a","term_name":"learning","termid":"GO:0007612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"operant conditioning","secondary_identifiers":["Wikipedia:Operant_conditioning"],"synonyms":[{"name":"instrumental conditioning","type":"exact"}],"termid":"GO:0035106"}


id: PBO:0071320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L27a pseudogene 4","termid":"PBO:0071320"}


id: GO:0033229
data:
  {"annotated_genes":["SJAG_04295"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109849,115185],"is_not":false,"summary":null,"term":"GO:0033229"}]},"cv_name":"molecular_function","definition":"Enables the transfer of cysteine from one side of a membrane to the other.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur amino acid transmembrane transporter activity","termid":"GO:0000099"},{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"neutral L-amino acid transmembrane transporter activity","termid":"GO:0015175"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04295":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"cysteine transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0033229","terms_by_termid":{"GO:0033229":null}}


id: PBO:0033772
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-pointed_nucleus_during_mitotic_interphase","termid":"PBO:0033772"}


id: GO:1900340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of methane biosynthetic process from formic acid.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of methane biosynthetic process from formic acid","termid":"GO:1900339"},{"relation_name":"is_a","term_name":"negative regulation of alkane biosynthetic process","termid":"GO:1901578"},{"relation_name":"is_a","term_name":"negative regulation of cellular respiration","termid":"GO:1901856"},{"relation_name":"negatively_regulates","term_name":"methane biosynthetic process from formic acid","termid":"GO:2001127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006091"],"is_obsolete":false,"name":"negative regulation of methane biosynthetic process from formic acid","synonyms":[{"name":"down regulation of methane biosynthetic process from formic acid","type":"exact"},{"name":"down-regulation of methane biosynthetic process from formic acid","type":"exact"},{"name":"downregulation of methane biosynthetic process from formic acid","type":"exact"},{"name":"inhibition of methane biosynthetic process from formic acid","type":"narrow"}],"termid":"GO:1900340"}


id: PBO:0055255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2682","termid":"PBO:0055255"}


id: GO:0014817
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a skeletal muscle satellite cell in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:mtg_muscle","GOC:ef","PMID:16607119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"skeletal muscle satellite cell commitment","termid":"GO:0014813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal muscle satellite cell fate specification","termid":"GO:0014817"}


id: PBO:0051382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 7-3 (pseudogene)","termid":"PBO:0051382"}


id: PBO:0000954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extended Fer/CIP4 (EFC) domain protein Cdc15","termid":"PBO:0000954"}


id: FYPO:0003917
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the degradation of messenger RNA (mRNA) molecules that contain nonsense mutations is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA catabolic process during vegetative growth","termid":"FYPO:0002137"},{"relation_name":"is_a","term_name":"abnormal nonsense-mediated decay","termid":"FYPO:0003916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000294","FYPO:0006551","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased nonsense-mediated decay","synonyms":[{"name":"decreased NMD","type":"exact"},{"name":"decreased nonsense-mediated decay during mitotic cell cycle","type":"related"},{"name":"decreased nonsense-mediated decay during vegetative growth","type":"exact"},{"name":"decreased nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","type":"exact"},{"name":"reduced nonsense-mediated decay","type":"exact"}],"termid":"FYPO:0003917"}


id: PBO:0055084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2502","termid":"PBO:0055084"}


id: FYPO:0002005
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the nuclear envelope has a lobate cross-section, i.e. one in which the edge has deep indentations or undulations that form lobes.","definition_xrefs":["PMID:2211869","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear envelope morphology during vegetative growth","termid":"FYPO:0000769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002403"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0002403","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"lobate nuclear envelope","synonyms":[{"name":"leaf-like nuclear envelope morphology","type":"related"},{"name":"lobate nuclear envelope during mitotic cell cycle","type":"related"},{"name":"lobate nuclear envelope during vegetative growth","type":"exact"}],"termid":"FYPO:0002005"}


id: GO:1903799
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of microRNA processing.","definition_xrefs":["PMID:22269326","GO_REF:0000058","GOC:BHF_miRNA","GOC:BHF","GOC:rph","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gene expression","termid":"GO:0010629"},{"relation_name":"is_a","term_name":"negative regulation of miRNA-mediated gene silencing","termid":"GO:0060965"},{"relation_name":"is_a","term_name":"regulation of miRNA processing","termid":"GO:1903798"},{"relation_name":"negatively_regulates","term_name":"miRNA processing","termid":"GO:0035196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of miRNA processing","synonyms":[{"name":"down regulation of gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"down regulation of miRNA biogenesis","type":"related"},{"name":"down regulation of miRNA processing","type":"exact"},{"name":"down regulation of miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"down regulation of microRNA biogenesis","type":"related"},{"name":"down regulation of microRNA biosynthesis","type":"related"},{"name":"down regulation of microRNA biosynthetic process","type":"related"},{"name":"down regulation of microRNA metabolic process","type":"related"},{"name":"down regulation of microRNA metabolism","type":"related"},{"name":"down regulation of microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"down regulation of production of miRNAs involved in gene silencing by miRNA","type":"exact"},{"name":"down regulation of production of microRNAs involved in gene silencing by microRNA","type":"exact"},{"name":"down-regulation of gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"down-regulation of miRNA biogenesis","type":"related"},{"name":"down-regulation of miRNA processing","type":"exact"},{"name":"down-regulation of miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"down-regulation of microRNA biogenesis","type":"related"},{"name":"down-regulation of microRNA biosynthesis","type":"related"},{"name":"down-regulation of microRNA biosynthetic process","type":"related"},{"name":"down-regulation of microRNA metabolic process","type":"related"},{"name":"down-regulation of microRNA metabolism","type":"related"},{"name":"down-regulation of microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"down-regulation of production of miRNAs involved in gene silencing by miRNA","type":"exact"},{"name":"down-regulation of production of microRNAs involved in gene silencing by microRNA","type":"exact"},{"name":"downregulation of gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"downregulation of miRNA biogenesis","type":"related"},{"name":"downregulation of miRNA processing","type":"exact"},{"name":"downregulation of miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"downregulation of microRNA biogenesis","type":"related"},{"name":"downregulation of microRNA biosynthesis","type":"related"},{"name":"downregulation of microRNA biosynthetic process","type":"related"},{"name":"downregulation of microRNA metabolic process","type":"related"},{"name":"downregulation of microRNA metabolism","type":"related"},{"name":"downregulation of microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"downregulation of production of miRNAs involved in gene silencing by miRNA","type":"exact"},{"name":"downregulation of production of microRNAs involved in gene silencing by microRNA","type":"exact"},{"name":"inhibition of gene silencing by miRNA, production of miRNAs","type":"narrow"},{"name":"inhibition of miRNA biogenesis","type":"related"},{"name":"inhibition of miRNA processing","type":"narrow"},{"name":"inhibition of miRNA-mediated gene silencing, production of miRNAs","type":"narrow"},{"name":"inhibition of microRNA biogenesis","type":"related"},{"name":"inhibition of microRNA biosynthesis","type":"related"},{"name":"inhibition of microRNA biosynthetic process","type":"related"},{"name":"inhibition of microRNA metabolic process","type":"related"},{"name":"inhibition of microRNA metabolism","type":"related"},{"name":"inhibition of microRNA-mediated gene silencing, production of microRNAs","type":"narrow"},{"name":"inhibition of production of miRNAs involved in gene silencing by miRNA","type":"narrow"},{"name":"inhibition of production of microRNAs involved in gene silencing by microRNA","type":"narrow"},{"name":"negative regulation of gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"negative regulation of miRNA biogenesis","type":"related"},{"name":"negative regulation of miRNA maturation","type":"narrow"},{"name":"negative regulation of miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"negative regulation of microRNA biogenesis","type":"related"},{"name":"negative regulation of microRNA biosynthesis","type":"related"},{"name":"negative regulation of microRNA biosynthetic process","type":"related"},{"name":"negative regulation of microRNA metabolic process","type":"related"},{"name":"negative regulation of microRNA metabolism","type":"related"},{"name":"negative regulation of microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"negative regulation of production of miRNAs involved in gene silencing by miRNA","type":"related"},{"name":"negative regulation of production of microRNAs involved in gene silencing by microRNA","type":"exact"}],"termid":"GO:1903799"}


id: PBO:0068970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 214, pseudogene","termid":"PBO:0068970"}


id: PBO:0034453
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_glutamate_dehydrogenase_(NADP+)_activity","termid":"PBO:0034453"}


id: GO:0097728
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).","definition_xrefs":["PMID:22118931","GOC:cilia","PMID:10330409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"motile cilium","termid":"GO:0031514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"9+0 motile cilium","synonyms":[{"name":"motile 9+0 cilium","type":"exact"},{"name":"nodal cilium","type":"narrow"}],"termid":"GO:0097728"}


id: PR:O94623
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA repair protein REV1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11076:SF13","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rev1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1347.01c","secondary_identifiers":["UniProtKB:O94623"],"synonyms":[{"name":"SPBC1347.01c","type":"related"},{"name":"Spom972h-REV1","type":"exact"},{"name":"reversionless protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94623"}


id: PBO:0029992
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_thiamine_starvation","termid":"PBO:0029992"}


id: GO:0048711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of astrocyte differentiation.","definition_xrefs":["GOC:vp","PMID:15139015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of glial cell differentiation","termid":"GO:0045687"},{"relation_name":"is_a","term_name":"regulation of astrocyte differentiation","termid":"GO:0048710"},{"relation_name":"positively_regulates","term_name":"astrocyte differentiation","termid":"GO:0048708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of astrocyte differentiation","synonyms":[{"name":"activation of astrocyte differentiation","type":"narrow"},{"name":"stimulation of astrocyte differentiation","type":"narrow"},{"name":"up regulation of astrocyte differentiation","type":"exact"},{"name":"up-regulation of astrocyte differentiation","type":"exact"},{"name":"upregulation of astrocyte differentiation","type":"exact"}],"termid":"GO:0048711"}


id: MOD:00853
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a carboxamido group with a carboxyl group labeled with two (18)O.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(18)O labeled deamidated residue","termid":"MOD:00851"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2x(18)O labeled deamidated residue","termid":"MOD:00853"}


id: FYPO:0002799
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which protein degradation is normal (i.e. indistinguishable from wild type). Protein degradation, also known as protein catabolism, is any metabolic process that results in the destruction of the native, active configuration of a protein, with or without the hydrolysis of peptide bonds.","definition_xrefs":["PomBase:mah","GO:0030163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein metabolic process","termid":"FYPO:0004849"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal protein degradation","synonyms":[{"name":"normal protein breakdown","type":"exact"},{"name":"normal protein catabolic process","type":"exact"},{"name":"normal protein catabolism","type":"exact"}],"termid":"FYPO:0002799"}


id: PBO:0089561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaxin 1 (Sam37)","termid":"PBO:0089561"}


id: FYPO:0000696
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of DNA-7-methylguanine glycosylase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal DNA-7-methylguanine glycosylase activity","termid":"FYPO:0000696"}


id: GO:0004746
data:
  {"annotated_genes":["SJAG_02360","SJAG_02491"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[106516,110934],"is_not":false,"summary":null,"term":"GO:0004746"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine + H+ = 5-amino-6-(D-ribitylamino)uracil + riboflavin.","definition_xrefs":["RHEA:20772","EC:2.5.1.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02360":null,"SJAG_02491":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016765","GO:0003824"],"is_obsolete":false,"name":"riboflavin synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R00066","MetaCyc:RIBOFLAVIN-SYN-RXN"],"synonyms":[{"name":"6,7-dimethyl-8-(1-D-ribityl)lumazine:6,7-dimethyl-8-(1-D-ribityl)lumazine 2,3-butanediyltransferase activity","type":"related"},{"name":"heavy riboflavin synthase","type":"narrow"},{"name":"light riboflavin synthase","type":"narrow"},{"name":"riboflavin synthetase activity","type":"related"},{"name":"riboflavine synthase activity","type":"related"},{"name":"riboflavine synthetase activity","type":"related"},{"name":"vitamin B2 synthase activity","type":"exact"}],"termid":"GO:0004746","terms_by_termid":{"GO:0004746":null}}


id: PBO:0082115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Acetyl-coA synthetase isoform; along with Acs1p, acetyl-coA synthetase isoform is the nuclear source of acetyl-coA for histone acetylation; mutants affect global transcription; required for growth on glucose; expressed under anaerobic conditions","termid":"PBO:0082115"}


id: GO:1903800
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of microRNA processing.","definition_xrefs":["GOC:TermGenie","PMID:22269326","GOC:BHF","GO_REF:0000058","GOC:BHF_miRNA","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of gene expression","termid":"GO:0010628"},{"relation_name":"is_a","term_name":"regulation of miRNA processing","termid":"GO:1903798"},{"relation_name":"is_a","term_name":"positive regulation of miRNA-mediated gene silencing","termid":"GO:2000637"},{"relation_name":"positively_regulates","term_name":"miRNA processing","termid":"GO:0035196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of miRNA processing","synonyms":[{"name":"activation of gene silencing by miRNA, production of miRNAs","type":"narrow"},{"name":"activation of miRNA biogenesis","type":"related"},{"name":"activation of miRNA processing","type":"narrow"},{"name":"activation of miRNA-mediated gene silencing, production of miRNAs","type":"narrow"},{"name":"activation of microRNA biogenesis","type":"related"},{"name":"activation of microRNA biosynthesis","type":"related"},{"name":"activation of microRNA biosynthetic process","type":"related"},{"name":"activation of microRNA metabolic process","type":"related"},{"name":"activation of microRNA metabolism","type":"related"},{"name":"activation of microRNA-mediated gene silencing, production of microRNAs","type":"narrow"},{"name":"activation of production of miRNAs involved in gene silencing by miRNA","type":"narrow"},{"name":"activation of production of microRNAs involved in gene silencing by microRNA","type":"narrow"},{"name":"positive regulation of gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"positive regulation of miRNA biogenesis","type":"related"},{"name":"positive regulation of miRNA maturation","type":"narrow"},{"name":"positive regulation of miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"positive regulation of microRNA biogenesis","type":"related"},{"name":"positive regulation of microRNA biosynthesis","type":"related"},{"name":"positive regulation of microRNA biosynthetic process","type":"related"},{"name":"positive regulation of microRNA metabolic process","type":"related"},{"name":"positive regulation of microRNA metabolism","type":"related"},{"name":"positive regulation of microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"positive regulation of production of miRNAs involved in gene silencing by miRNA","type":"related"},{"name":"positive regulation of production of microRNAs involved in gene silencing by microRNA","type":"exact"}],"termid":"GO:1903800"}


id: PBO:0062365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily Y member 1","termid":"PBO:0062365"}


id: PBO:0000236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ANC9 family protein","termid":"PBO:0000236"}


id: FYPO:0003184
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cytoskeleton is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"},{"relation_name":"is_a","term_name":"normal protein localization to cytoskeleton","termid":"FYPO:0004096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to cytoskeleton during vegetative growth","synonyms":[{"name":"normal protein localisation to cytoskeleton during vegetative growth","type":"exact"},{"name":"normal protein localization to cytoskeleton during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003184"}


id: SO:0000391
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.","direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA","termid":"SO:0000274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1_snRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/U1_snRNA"],"synonyms":[{"name":"U1 small nuclear RNA","type":"exact"},{"name":"U1 snRNA","type":"exact"},{"name":"small nuclear RNA U1","type":"exact"},{"name":"snRNA U1","type":"exact"}],"termid":"SO:0000391"}


id: PBO:0039549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD44 divergent transcript","termid":"PBO:0039549"}


id: FYPO:0003187
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found associated with astral microtubules during mitosis is observed there during mitosis. The protein may or may not normally associate with astral microtubules during other cell cycle phases.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized protein during vegetative growth","termid":"FYPO:0000782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"protein mislocalized to astral microtubule during mitosis","synonyms":[{"name":"ectopic protein localization to astral microtubule during mitosis","type":"exact"},{"name":"protein mislocalised to astral microtubule during mitosis","type":"exact"},{"name":"protein mislocalized to astral microtubule during mitosis during mitotic cell cycle","type":"related"},{"name":"protein mislocalized to astral microtubule during mitosis during vegetative growth","type":"exact"},{"name":"protein mislocalized to astral microtubule during mitotic M phase","type":"related"},{"name":"protein mislocalized to astral microtubule during mitotic nuclear division","type":"exact"}],"termid":"FYPO:0003187"}


id: PBO:0034462
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_phosphorylation_during_cellular_response_to_brefeldin_A","termid":"PBO:0034462"}


id: GO:0033871
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate + [heparan sulfate]-glucosamine 3-sulfate; modifies selected glucosamine residues preceded by GlcA2S.","definition_xrefs":["EC:2.8.2.29"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heparan sulfate sulfotransferase activity","termid":"GO:0034483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016782","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity","secondary_identifiers":["MetaCyc:2.8.2.29-RXN"],"synonyms":[{"name":"3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase activity","type":"broad"},{"name":"3-OST-2","type":"related"},{"name":"glucosaminyl 3-O-sulfotransferase 2 activity","type":"related"},{"name":"glucosaminyl 3-O-sulfotransferase activity","type":"broad"},{"name":"heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2 activity","type":"related"},{"name":"heparan sulfate D-glucosaminyl 3-O-sulfotransferase activity","type":"broad"},{"name":"heparin-glucosamine 3-sulfotransferase 2 activity","type":"related"},{"name":"isoform/isozyme 2 (3-OST-2, HS3ST2)","type":"related"}],"termid":"GO:0033871"}


id: GO:0097449
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A prolongation or process extending from the soma of an astrocyte and wrapping around neurons.","definition_xrefs":["NIF_Subcellular:sao1630537580"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell projection","termid":"GO:0097386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"astrocyte projection","synonyms":[{"name":"astrocyte process","type":"exact"},{"name":"peripheral astrocyte process","type":"related"},{"name":"vellous process","type":"related"}],"termid":"GO:0097449"}


id: GO:0043726
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-amino-6-(5-phospho-D-ribitylamino)uracil + H2O = 5-amino-6-(D-ribitylamino)uracil + phosphate.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0016788","GO:0003824"],"is_obsolete":false,"name":"5-amino-6-(5-phosphoribitylamino)uracil phosphatase activity","secondary_identifiers":["EC:3.1.3.104","GO:0019173","RHEA:25197","MetaCyc:RIBOPHOSPHAT-RXN"],"synonyms":[{"name":"pyrimidine phosphatase activity","type":"exact"}],"termid":"GO:0043726"}


id: GO:0070348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or decreases the rate or extent of brown fat cell proliferation.","definition_xrefs":["GOC:mah","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of fat cell proliferation","termid":"GO:0070345"},{"relation_name":"is_a","term_name":"regulation of brown fat cell proliferation","termid":"GO:0070347"},{"relation_name":"negatively_regulates","term_name":"brown fat cell proliferation","termid":"GO:0070342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of brown fat cell proliferation","synonyms":[{"name":"down regulation of brown fat cell proliferation","type":"exact"},{"name":"down-regulation of brown fat cell proliferation","type":"exact"},{"name":"downregulation of brown fat cell proliferation","type":"exact"},{"name":"inhibition of brown fat cell proliferation","type":"narrow"},{"name":"negative regulation of brown adipocyte proliferation","type":"exact"},{"name":"negative regulation of brown adipose cell proliferation","type":"exact"}],"termid":"GO:0070348"}


id: PBO:0083647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Elongin A; F-box protein that forms a heterodimer with Elc1p and is required for ubiquitin-dependent degradation of the RNA Polymerase II subunit Rpo21p; subunit of the Elongin-Cullin-Socs (ECS) ligase complex","termid":"PBO:0083647"}


id: GO:0034504
data:
  {"annotated_genes":["SJAG_02520","SJAG_00375","SJAG_03907","SJAG_02210","SJAG_01584","SJAG_03693","SJAG_04645","SJAG_02274","SJAG_01655","SJAG_01065","SJAG_03959","SJAG_01311","SJAG_00093","SJAG_00586","SJAG_02425","SJAG_01084","SJAG_01374","SJAG_00471","SJAG_03729","SJAG_03593","SJAG_03048","SJAG_01185","SJAG_03453","SJAG_01621","SJAG_03662","SJAG_01909","SJAG_04411","SJAG_01083","SJAG_01789","SJAG_03299","SJAG_03986","SJAG_04366","SJAG_01013","SJAG_02592","SJAG_00840","SJAG_03470","SJAG_00968","SJAG_01328","SJAG_01834","SJAG_02998","SJAG_03300","SJAG_04148","SJAG_02757","SJAG_00065","SJAG_01449","SJAG_03002","SJAG_00383"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101928],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0042308"},{"annotations":[110625],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1900181"},{"annotations":[102270,87741,97237,99778,112591,114875],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006607"},{"annotations":[86877,90413,98480],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0042307"},{"annotations":[91021,104599,111677,111051,99486,100678,86977,101501,103900,90030,90326,106567,113437,87948,92180,98654,91815,96494,101171,109402,84946,110614,85459,89433,89487,65721,111149,102450,99104,111968,85041,93897,98751,103054,114876,102685,111994,99779],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006606"},{"annotations":[96495,102272],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036228"}]},"cv_name":"biological_process","definition":"A process in which a protein transports or maintains the localization of another protein to the nucleus.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to organelle","termid":"GO:0033365"}],"gene_count":47,"genes_by_uniquename":{"SJAG_00065":null,"SJAG_00093":null,"SJAG_00375":null,"SJAG_00383":null,"SJAG_00471":null,"SJAG_00586":null,"SJAG_00840":null,"SJAG_00968":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01083":null,"SJAG_01084":null,"SJAG_01185":null,"SJAG_01311":null,"SJAG_01328":null,"SJAG_01374":null,"SJAG_01449":null,"SJAG_01584":null,"SJAG_01621":null,"SJAG_01655":null,"SJAG_01789":null,"SJAG_01834":null,"SJAG_01909":null,"SJAG_02210":null,"SJAG_02274":null,"SJAG_02425":null,"SJAG_02520":null,"SJAG_02592":null,"SJAG_02757":null,"SJAG_02998":null,"SJAG_03002":null,"SJAG_03048":null,"SJAG_03299":null,"SJAG_03300":null,"SJAG_03453":null,"SJAG_03470":null,"SJAG_03593":null,"SJAG_03662":null,"SJAG_03693":null,"SJAG_03729":null,"SJAG_03907":null,"SJAG_03959":null,"SJAG_03986":null,"SJAG_04148":null,"SJAG_04366":null,"SJAG_04411":null,"SJAG_04645":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to nucleus","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0044744"],"synonyms":[{"name":"protein localisation to nucleus","type":"exact"},{"name":"protein localization in cell nucleus","type":"exact"},{"name":"protein localization in nucleus","type":"exact"},{"name":"protein targeting to nucleus","type":"related"}],"termid":"GO:0034504","terms_by_termid":{"GO:0006606":null,"GO:0006607":null,"GO:0036228":null,"GO:0042307":null,"GO:0042308":null,"GO:1900181":null}}


id: PBO:0054090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1443","termid":"PBO:0054090"}


id: PBO:0034176
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-contributes_to_condition","termid":"PBO:0034176"}


id: PBO:0084480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Maturase-like protein","termid":"PBO:0084480"}


id: PBO:0067278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 357, pseudogene","termid":"PBO:0067278"}


id: PBO:0052440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLC4 antisense RNA 1","termid":"PBO:0052440"}


id: PBO:0040812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BICD family like cargo adaptor 1","termid":"PBO:0040812"}


id: GO:0070702
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The inner of two mucus layers secreted by epithelial cells in the colon; the inner mucus layer is firmly attached to the epithelium, is densely packed with a compact stratified appearance and is devoid of bacteria.","definition_xrefs":["PMID:18806221","PMID:19432394","GOC:mah","GOC:mm2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucus layer","termid":"GO:0070701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005576"],"is_obsolete":false,"name":"inner mucus layer","termid":"GO:0070702"}


id: PR:O14122
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cullin-4B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01441","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cullin-4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3A11.08","secondary_identifiers":["UniProtKB:O14122"],"synonyms":[{"name":"Cul-4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-CUL4B","type":"exact"}],"termid":"PR:O14122"}


id: PBO:0077633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane and ubiquitin like domain containing 1","termid":"PBO:0077633"}


id: GO:0052812
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate + ADP + 2 H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-phosphatidylinositol-3,4-bisphosphate 5-kinase activity (obsolete GO:0052812)","synonyms":[{"name":"phosphatidylinositol-3,4-bisphosphate 5-kinase activity","type":"exact"}],"termid":"GO:0052812"}


id: GO:2000914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of galactoglucomannan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of macromolecule metabolic process","termid":"GO:0010604"},{"relation_name":"is_a","term_name":"positive regulation of carbohydrate metabolic process","termid":"GO:0045913"},{"relation_name":"is_a","term_name":"regulation of galactoglucomannan catabolic process","termid":"GO:2000912"},{"relation_name":"positively_regulates","term_name":"galactoglucomannan catabolic process","termid":"GO:2000885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"positive regulation of galactoglucomannan catabolic process","synonyms":[{"name":"positive regulation of galactoglucomannan catabolism","type":"exact"}],"termid":"GO:2000914"}


id: GO:0018111
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-methionine = D-methionine.","definition_xrefs":["EC:5.1.1.2","RHEA:12492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"methionine racemase activity","secondary_identifiers":["MetaCyc:METHIONINE-RACEMASE-RXN","KEGG_REACTION:R00655"],"termid":"GO:0018111"}


id: MOD:00712
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to a methylated proline, such as N,N-dimethylproline.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated proline","synonyms":[{"name":"MePro","type":"exact"}],"termid":"MOD:00712"}


id: PBO:0087937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translational inhibitor and suppressor of proteasome-assembly defects; P-body component that inhibits translation, rescues proteasome base assembly defects and aggregation of regulatory particle subunits during stress when overexpressed; proposed to function to bridge the HOG and pheromone pathways with the cell wall integrity pathway in response to heat stress; interacts physically and genetically with splicing factor MSL1; large, highly-charge protein containing many disordered regions","termid":"PBO:0087937"}


id: PBO:0048239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G antigen 8","termid":"PBO:0048239"}


id: PBO:0061892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opsin 1, long wave sensitive","termid":"PBO:0061892"}


id: PBO:0048505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDF5 antisense RNA 1","termid":"PBO:0048505"}


id: PBO:0051434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 3-16","termid":"PBO:0051434"}


id: PBO:0030081
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cell_tip","termid":"PBO:0030081"}


id: GO:0004474
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + glyoxylate + H2O = (S)-malate + CoA + H+.","definition_xrefs":["RHEA:18181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, acyl groups converted into alkyl on transfer","termid":"GO:0046912"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"malate synthase activity","secondary_identifiers":["MetaCyc:MALSYN-RXN","KEGG_REACTION:R00472","EC:2.3.3.9"],"synonyms":[{"name":"L-malate glyoxylate-lyase (CoA-acetylating) activity","type":"related"},{"name":"acetyl-CoA:glyoxylate C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)","type":"related"},{"name":"glyoxylate transacetase activity","type":"related"},{"name":"glyoxylate transacetylase activity","type":"related"},{"name":"glyoxylic transacetase activity","type":"related"},{"name":"malate condensing enzyme activity","type":"related"},{"name":"malate synthetase activity","type":"related"},{"name":"malic synthetase activity","type":"related"},{"name":"malic-condensing enzyme activity","type":"related"}],"termid":"GO:0004474"}


id: PBO:0002026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"14-3-3 protein Rad24","termid":"PBO:0002026"}


id: PBO:0084944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Multidrug transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in spore wall assembly; sequence similarity to DTR1 and QDR3, and the triple mutant dtr1 qdr1 qdr3 exhibits reduced dityrosine fluorescence relative to the single mutants; required for resistance to quinidine, ketoconazole, fluconazole, and barban; QDR1 has a paralog, AQR1, that arose from the whole genome duplication","termid":"PBO:0084944"}


id: GO:0045871
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of rhodopsin gene expression.","definition_xrefs":["GOC:dph","GOC:go_curators","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of rhodopsin gene expression (obsolete GO:0045871)","synonyms":[{"name":"down regulation of rhodopsin gene activity","type":"exact"},{"name":"down-regulation of rhodopsin gene activity","type":"exact"},{"name":"downregulation of rhodopsin gene activity","type":"exact"},{"name":"inhibition of rhodopsin gene activity","type":"narrow"},{"name":"negative regulation of rhodopsin gene activity","type":"exact"}],"termid":"GO:0045871"}


id: PBO:0083752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential core component of mitochondrial TIM22 complex; involved in insertion of polytopic proteins into inner membrane; forms channel through which proteins are imported; different regions of Tim22p have functionally diverse roles in recruiting partner subunits to core channel","termid":"PBO:0083752"}


id: PBO:0029715
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_absent_from_cell","termid":"PBO:0029715"}


id: MOD:00757
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to O4-galactosyl-L-hydroxyproline.","definition_xrefs":["RESID:AA0389"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O4-galactosyl-L-hydroxyproline","synonyms":[{"name":"(2S,4R)-4-(beta-D-galactopyranosyloxy)pyrrolidine-2-carboxylic acid","type":"exact"},{"name":"4-(beta-D-galactopyranosyloxy)proline","type":"exact"},{"name":"4-(galactosyloxy)proline","type":"exact"},{"name":"CARBOHYD O-linked (Gal) hydroxyproline","type":"exact"},{"name":"O4-galactosyl-L-hydroxyproline","type":"exact"},{"name":"O4-glycosyl-hydroxyproline","type":"exact"},{"name":"beta-galactopyranosyl-4-hydroxyproline","type":"exact"}],"termid":"MOD:00757"}


id: PBO:0066110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS guanyl releasing protein 2","termid":"PBO:0066110"}


id: PBO:0071658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37a","termid":"PBO:0071658"}


id: GO:0000055
data:
  {"annotated_genes":["SJAG_03496","SJAG_03719","SJAG_01391","SJAG_01358","SJAG_01065","SJAG_00178","SJAG_03882","SJAG_04308","SJAG_00753"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85812,87106,95720,97961,99105,101863,112399,113856,114366],"is_not":false,"summary":null,"term":"GO:0000055"}]},"cv_name":"biological_process","definition":"The directed movement of a ribosomal large subunit from the nucleus into the cytoplasm.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosomal subunit export from nucleus","termid":"GO:0000054"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00178":null,"SJAG_00753":null,"SJAG_01065":null,"SJAG_01358":null,"SJAG_01391":null,"SJAG_03496":null,"SJAG_03719":null,"SJAG_03882":null,"SJAG_04308":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0042254","GO:0008150","GO:0051179","GO:0044085","GO:0006913"],"is_obsolete":false,"name":"ribosomal large subunit export from nucleus","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000057"],"synonyms":[{"name":"50S ribosomal subunit export from nucleus","type":"narrow"},{"name":"60S ribosomal subunit export from nucleus","type":"narrow"},{"name":"ribosomal large subunit export from cell nucleus","type":"exact"},{"name":"ribosomal large subunit export out of nucleus","type":"exact"},{"name":"ribosomal large subunit transport from nucleus to cytoplasm","type":"exact"},{"name":"ribosomal large subunit-nucleus export","type":"exact"}],"termid":"GO:0000055","terms_by_termid":{"GO:0000055":null}}


id: PBO:0031306
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_cell","termid":"PBO:0031306"}


id: GO:0048378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lateral mesoderm cell fate specification.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesodermal cell fate specification","termid":"GO:0042661"},{"relation_name":"regulates","term_name":"lateral mesodermal cell fate specification","termid":"GO:0048377"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lateral mesodermal cell fate specification","synonyms":[{"name":"regulation of lateral plate mesodermal cell fate specification","type":"exact"}],"termid":"GO:0048378"}


id: PBO:0077002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THAP domain containing 12 pseudogene 4","termid":"PBO:0077002"}


id: PBO:0059962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND3 pseudogene 7","termid":"PBO:0059962"}


id: PBO:0087847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Topoisomerase II; relieves torsional strain in DNA by cleaving and re-sealing phosphodiester backbone of both positively and negatively supercoiled DNA; cleaves complementary strands; localizes to axial cores in meiosis; required for replication slow zone (RSZ) breakage following Mec1p inactivation; human homolog TOP2A implicated in cancers, and can complement yeast null mutant","termid":"PBO:0087847"}


id: GO:0097029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which antigen-activated dendritic cells acquire the specialized features of a mature conventional dendritic cell. Mature conventional dendritic cells upregulate the surface expression of MHC molecules, chemokine receptors and adhesion molecules, and increase the number of dendrites (cytoplasmic protrusions) in preparation for migration to lymphoid organs where they present antigen to T cells.","definition_xrefs":["PMID:15845453","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid leukocyte differentiation","termid":"GO:0002573"},{"relation_name":"is_a","term_name":"dendritic cell differentiation","termid":"GO:0097028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mature conventional dendritic cell differentiation","termid":"GO:0097029"}


id: PBO:0086499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative plasma membrane phosphatase; involved in the general stress response and inactivating dephosphorylation of Mep2p; required along with Psr1p and binding partner Whi2p for full activation of STRE-mediated gene expression, possibly through Msn2p dephosphorylation, and for inhibition of TORC1 in response to limiting amino acids; regulates the sodium ion stress response with Psr1p; member of the HAD family of protein phosphatases","termid":"PBO:0086499"}


id: PATO:0001370
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A coating quality which is sticky or clammy.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coating","termid":"PATO:0002012"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"viscid","termid":"PATO:0001370"}


id: PBO:0002011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centaurin ADOP ribosylation factor GTPase activating protein family (predicted)","termid":"PBO:0002011"}


id: FYPO:0003636
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which U2 snRNP binding by a gene product is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein-protein interaction","termid":"FYPO:0001645"},{"relation_name":"is_a","term_name":"abnormal ribonucleoprotein complex binding","termid":"FYPO:0003632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000702","FYPO:0000652"],"is_obsolete":false,"name":"decreased U2 snRNP binding","synonyms":[{"name":"reduced U2 snRNP binding","type":"exact"}],"termid":"FYPO:0003636"}


id: GO:0018902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving 1,3-dichloro-2-propanol (DCP), a halohydrin suspected of being carcinogenic, mutagenic and genotoxic. DCP is used as a general solvent, as an intermediate in organic synthesis and in paints, varnishes, lacquers, water colors, binders and photographic lacquers.","definition_xrefs":["UM-BBD_pathwayID:dcp","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete 1,3-dichloro-2-propanol metabolic process (obsolete GO:0018902)","synonyms":[{"name":"1,3-dichloro-2-propanol metabolism","type":"exact"},{"name":"DCP metabolic process","type":"exact"},{"name":"DCP metabolism","type":"exact"}],"termid":"GO:0018902"}


id: PBO:0030676
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_size","termid":"PBO:0030676"}


id: PBO:0056752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"METTL5 pseudogene 3","termid":"PBO:0056752"}


id: PBO:0012604
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Triose Phosphate Isomerase","termid":"PBO:0012604"}


id: GO:0021916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Short range signaling between cells of the paraxial mesoderm and motor neuron precursors in the spinal cord that specifies the fate of the motor column neuron precursors along the anterior-posterior axis.","definition_xrefs":["GOC:dph","PMID:11262869","GO_REF:0000021","GOC:jid","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inductive cell-cell signaling","termid":"GO:0031129"},{"relation_name":"part_of","term_name":"somatic motor neuron fate commitment","termid":"GO:0021917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inductive cell-cell signaling between paraxial mesoderm and motor neuron precursors","synonyms":[{"name":"inductive cell-cell signalling between paraxial mesoderm and motor neuron precursors","type":"exact"}],"termid":"GO:0021916"}


id: PBO:0068738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U5B small nuclear 1","termid":"PBO:0068738"}


id: PBO:0017426
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_integral_part","termid":"PBO:0017426"}


id: GO:0051889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of timing of exogen, the shedding phase of the hair cycle.","definition_xrefs":["GOC:pr","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of hair follicle maturation","termid":"GO:0048817"},{"relation_name":"is_a","term_name":"regulation of timing of exogen","termid":"GO:0051887"},{"relation_name":"negatively_regulates","term_name":"exogen","termid":"GO:0042638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of timing of exogen","synonyms":[{"name":"down regulation of exogen","type":"related"},{"name":"down-regulation of exogen","type":"related"},{"name":"downregulation of exogen","type":"related"},{"name":"inhibition of exogen","type":"narrow"},{"name":"negative regulation of exogen","type":"related"}],"termid":"GO:0051889"}


id: PBO:0083810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein with two zinc fingers; present in nucleus of growing cells, relocates to cytoplasm in starved cells via a process mediated by Cpr1p; binds translation elongation factor eEF-1 (Tef1p); relative distribution to nucleus increases upon DNA replication stress; human ZPR1 gene can complement yeast by allowing growth during down-regulation of yeast zpr1","termid":"PBO:0083810"}


id: GO:0042694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a muscle cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:go_curators","CL:0000187"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"muscle cell fate commitment","termid":"GO:0042693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle cell fate specification","termid":"GO:0042694"}


id: FYPO:0001804
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. An inviable phenotype observed in the vegetative growth phase of the life cycle in which a cell lyses, i.e. the plasma membrane ruptures and cytoplasm is lost, during a cellular response to caffeine. Note that in fission yeast cell lysis, the integrity of the cell wall is also compromised.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete cell lysis during cellular response to caffeine (obsolete FYPO:0001804)","synonyms":[{"name":"cell lysis during cellular response to caffeine during mitotic cell cycle","type":"related"},{"name":"cell lysis during cellular response to caffeine during vegetative growth","type":"exact"},{"name":"cytolysis during cellular response to caffeine","type":"exact"},{"name":"inviable, lysed cell during cellular response to caffeine","type":"exact"},{"name":"lysed cell in response to caffeine","type":"exact"}],"termid":"FYPO:0001804"}


id: PR:Q9USW1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A basic salivary proline-rich protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02949","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C21B10.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21B10.03c","secondary_identifiers":["UniProtKB:Q9USW1"],"synonyms":[{"name":"Spom972h-PRB1","type":"exact"}],"termid":"PR:Q9USW1"}


id: GO:0051236
data:
  {"annotated_genes":["SJAG_01652","SJAG_04589","SJAG_03156","SJAG_04115","SJAG_03299","SJAG_00178","SJAG_01584","SJAG_05328","SJAG_03358","SJAG_02520","SJAG_00471","SJAG_02425","SJAG_02661","SJAG_03693","SJAG_03283","SJAG_01534","SJAG_00298","SJAG_02534","SJAG_01449","SJAG_03986","SJAG_03847","SJAG_04721","SJAG_03300","SJAG_00375","SJAG_04083","SJAG_03593","SJAG_04017","SJAG_02274","SJAG_01065","SJAG_03729","SJAG_00641","SJAG_01715","SJAG_02704","SJAG_04148","SJAG_01185","SJAG_04536","SJAG_04379","SJAG_03002","SJAG_04202","SJAG_01083","SJAG_03470","SJAG_04622","SJAG_04645","SJAG_02209","SJAG_02757","SJAG_01529","SJAG_01467","SJAG_04480","SJAG_04347","SJAG_01013","SJAG_04472","SJAG_04310","SJAG_00992","SJAG_04656","SJAG_00093","SJAG_01374"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97236,101500,113436,99103,111050,85515,113566,100057,93166,111675,86639,85032],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006406"},{"annotations":[112590],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031990"},{"annotations":[59222,57994,63914],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051028"},{"annotations":[98847,114195,97475,98051,110613,112739,107898,111676,112592,112224,92596,106565,112485,101862,115103,102279,98750,105992,97950,107261,100058,93015,68957,86976,104824,111148,88215,111967,103763,109401],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016973"},{"annotations":[85043,92182,91023,90032,92568,96497,101173],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006405"},{"annotations":[98655],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006404"},{"annotations":[85383,101864,101389,108145,109687],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006409"},{"annotations":[95621],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016031"},{"annotations":[109688],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071528"}]},"cv_name":"biological_process","definition":"The directed movement of RNA to a specific location.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of localization","termid":"GO:0051234"},{"relation_name":"part_of","term_name":"RNA localization","termid":"GO:0006403"}],"gene_count":56,"genes_by_uniquename":{"SJAG_00093":null,"SJAG_00178":null,"SJAG_00298":null,"SJAG_00375":null,"SJAG_00471":null,"SJAG_00641":null,"SJAG_00992":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01083":null,"SJAG_01185":null,"SJAG_01374":null,"SJAG_01449":null,"SJAG_01467":null,"SJAG_01529":null,"SJAG_01534":null,"SJAG_01584":null,"SJAG_01652":null,"SJAG_01715":null,"SJAG_02209":null,"SJAG_02274":null,"SJAG_02425":null,"SJAG_02520":null,"SJAG_02534":null,"SJAG_02661":null,"SJAG_02704":null,"SJAG_02757":null,"SJAG_03002":null,"SJAG_03156":null,"SJAG_03283":null,"SJAG_03299":null,"SJAG_03300":null,"SJAG_03358":null,"SJAG_03470":null,"SJAG_03593":null,"SJAG_03693":null,"SJAG_03729":null,"SJAG_03847":null,"SJAG_03986":null,"SJAG_04017":null,"SJAG_04083":null,"SJAG_04115":null,"SJAG_04148":null,"SJAG_04202":null,"SJAG_04310":null,"SJAG_04347":null,"SJAG_04379":null,"SJAG_04472":null,"SJAG_04480":null,"SJAG_04536":null,"SJAG_04589":null,"SJAG_04622":null,"SJAG_04645":null,"SJAG_04656":null,"SJAG_04721":null,"SJAG_05328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"establishment of RNA localization","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"RNA positioning","type":"exact"},{"name":"RNA recruitment","type":"exact"},{"name":"establishment of RNA localisation","type":"exact"}],"termid":"GO:0051236","terms_by_termid":{"GO:0006404":null,"GO:0006405":null,"GO:0006406":null,"GO:0006409":null,"GO:0016031":null,"GO:0016973":null,"GO:0031990":null,"GO:0051028":null,"GO:0071528":null}}


id: FYPO:0005614
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type) during a cellular response to bleomycin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal protein phosphorylation during cellular response to bleomycin","synonyms":[{"name":"normal protein phosphorylation during cellular response to bleomycin during mitotic cell cycle","type":"related"},{"name":"normal protein phosphorylation during cellular response to bleomycin during vegetative growth","type":"exact"}],"termid":"FYPO:0005614"}


id: PBO:0080155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vinculin","termid":"PBO:0080155"}


id: PBO:0083711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein involved in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting; MGA2 has a paralog, SPT23, that arose from the whole genome duplication","termid":"PBO:0083711"}


id: PBO:0084309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Isoamyl acetate-hydrolyzing esterase; required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing","termid":"PBO:0084309"}


id: PR:P25295
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gtb1 gene.","definition_xrefs":["UniProtKB:P25295","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin gamma chain (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32F12.04","synonyms":[{"name":"Spom972h-gtb1","type":"exact"},{"name":"gamma-tubulin (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P25295"}


id: PBO:0044944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrofolate reductase","termid":"PBO:0044944"}


id: PATO:0000444
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000444 percentage value (obsolete PATO:0000444)","termid":"PATO:0000444"}


id: PBO:0089976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snoRNP assembly factor Naf1","termid":"PBO:0089976"}


id: GO:0140848
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + monoatomic cation(in) = solute(in) + monoatomic cation(out). Monoatomic cations include H+, Mg2+, Ca2+, etc.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transporter activity","termid":"GO:0008324"},{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"},{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"amino acid:monoatomic cation antiporter activity","termid":"GO:0140848"}


id: PR:Q9P7S9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ies4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7S9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INO80 complex subunit 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23G3.04","synonyms":[{"name":"Spom972h-ies4","type":"exact"}],"termid":"PR:Q9P7S9"}


id: PBO:0038813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 20","termid":"PBO:0038813"}


id: GO:0000701
data:
  {"annotated_genes":["SJAG_02261"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90911],"is_not":false,"summary":null,"term":"GO:0000701"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal of purines present in mismatches, especially opposite oxidized purines, by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic (AP) site.","definition_xrefs":["GOC:elh","PMID:9224623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch base pair DNA N-glycosylase activity","termid":"GO:0000700"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016798","GO:0016787","GO:0140097","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"purine-specific mismatch base pair DNA N-glycosylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:3.2.2.31"],"synonyms":[{"name":"A/G-specific adenine DNA glycosylase activity","type":"narrow"}],"termid":"GO:0000701","terms_by_termid":{"GO:0000701":null}}


id: PBO:0041592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase 5A pseudogene 1","termid":"PBO:0041592"}


id: PBO:0091851
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Defective In Sister chromatid joining","termid":"PBO:0091851"}


id: PBO:0030493
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-coenzyme_Q10_absent_from_cell","termid":"PBO:0030493"}


id: PBO:0053745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 972","termid":"PBO:0053745"}


id: GO:0035609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of a C-terminal, gene-encoded glutamate residue from a protein.","definition_xrefs":["GOC:sp","PMID:21074048"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-terminal protein amino acid modification","termid":"GO:0018410"},{"relation_name":"is_a","term_name":"protein deglutamylation","termid":"GO:0035608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"C-terminal protein deglutamylation","synonyms":[{"name":"protein primary sequence deglutamylation","type":"exact"}],"termid":"GO:0035609"}


id: PBO:0059828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial transcription termination factor 2","termid":"PBO:0059828"}


id: PR:O42996
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC27B12.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42996"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized WD repeat-containing protein C27B12.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC27B12.05","synonyms":[{"name":"Spom972h-SPBC27B12.05","type":"exact"}],"termid":"PR:O42996"}


id: PATO:0001307
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A variability of temperature which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"variant temperature","termid":"PATO:0001314"},{"relation_name":"is_a","term_name":"decreased process quality","termid":"PATO:0002302"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased variability of temperature","synonyms":[{"name":"low variability of temperature","type":"exact"}],"termid":"PATO:0001307"}


id: GO:0006643
data:
  {"annotated_genes":["SJAG_02056","SJAG_04107","SJAG_02842","SJAG_00261","SJAG_03292","SJAG_00506","SJAG_04986","SJAG_00176","SJAG_01570","SJAG_03672","SJAG_02085","SJAG_03115","SJAG_03066","SJAG_04975","SJAG_03801","SJAG_05327","SJAG_04165","SJAG_00519","SJAG_02429","SJAG_01416","SJAG_06425","SJAG_05278","SJAG_03076","SJAG_04881","SJAG_02903","SJAG_05311","SJAG_02168","SJAG_02885","SJAG_02706","SJAG_01057","SJAG_04550","SJAG_01356","SJAG_01860","SJAG_04924","SJAG_05219","SJAG_01857","SJAG_03506","SJAG_02776","SJAG_02913","SJAG_01227","SJAG_00880","SJAG_01300","SJAG_02804","SJAG_04878","SJAG_01219","SJAG_03878","SJAG_04337","SJAG_04178","SJAG_02590","SJAG_04119","SJAG_00068","SJAG_04578","SJAG_02488","SJAG_00846","SJAG_03690","SJAG_00295","SJAG_02305","SJAG_00831","SJAG_06383","SJAG_03953","SJAG_02523","SJAG_04913","SJAG_03015"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106598],"is_not":false,"summary":null,"term":"GO:0006643"},{"annotations":[110943],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006666"},{"annotations":[88807,101657,104946,106209,87926,105847],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046513"},{"annotations":[98250],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006672"},{"annotations":[94175,89022,102835,107747,83476,88248,113411,87247,94945,85583,97688,89111,96308,84687,84959,103675,99148,106061,112304,87420,92485,99825,104713,94738,96374,108507,110100,111374,99888,110944,89567,90555],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006506"},{"annotations":[91189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006673"},{"annotations":[93571],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006676"},{"annotations":[87827,91299,91786,86767,108685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051999"},{"annotations":[108686,87828],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006675"},{"annotations":[96825,107045],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046467"},{"annotations":[85863,104947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046521"},{"annotations":[101999,93572,105848,108687,91190,85538,97498,98252,113690,87967,110945,96327,86627,89591,105755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030148"},{"annotations":[97562],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006665"},{"annotations":[101658,92970,93730,88808,102101,105849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046512"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving membrane lipids, any lipid found in or associated with a biological membrane.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular lipid metabolic process","termid":"GO:0044255"}],"gene_count":63,"genes_by_uniquename":{"SJAG_00068":null,"SJAG_00176":null,"SJAG_00261":null,"SJAG_00295":null,"SJAG_00506":null,"SJAG_00519":null,"SJAG_00831":null,"SJAG_00846":null,"SJAG_00880":null,"SJAG_01057":null,"SJAG_01219":null,"SJAG_01227":null,"SJAG_01300":null,"SJAG_01356":null,"SJAG_01416":null,"SJAG_01570":null,"SJAG_01857":null,"SJAG_01860":null,"SJAG_02056":null,"SJAG_02085":null,"SJAG_02168":null,"SJAG_02305":null,"SJAG_02429":null,"SJAG_02488":null,"SJAG_02523":null,"SJAG_02590":null,"SJAG_02706":null,"SJAG_02776":null,"SJAG_02804":null,"SJAG_02842":null,"SJAG_02885":null,"SJAG_02903":null,"SJAG_02913":null,"SJAG_03015":null,"SJAG_03066":null,"SJAG_03076":null,"SJAG_03115":null,"SJAG_03292":null,"SJAG_03506":null,"SJAG_03672":null,"SJAG_03690":null,"SJAG_03801":null,"SJAG_03878":null,"SJAG_03953":null,"SJAG_04107":null,"SJAG_04119":null,"SJAG_04165":null,"SJAG_04178":null,"SJAG_04337":null,"SJAG_04550":null,"SJAG_04578":null,"SJAG_04878":null,"SJAG_04881":null,"SJAG_04913":null,"SJAG_04924":null,"SJAG_04975":null,"SJAG_04986":null,"SJAG_05219":null,"SJAG_05278":null,"SJAG_05311":null,"SJAG_05327":null,"SJAG_06383":null,"SJAG_06425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"membrane lipid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"membrane lipid metabolism","type":"exact"}],"termid":"GO:0006643","terms_by_termid":{"GO:0006506":null,"GO:0006643":null,"GO:0006665":null,"GO:0006666":null,"GO:0006672":null,"GO:0006673":null,"GO:0006675":null,"GO:0006676":null,"GO:0030148":null,"GO:0046467":null,"GO:0046512":null,"GO:0046513":null,"GO:0046521":null,"GO:0051999":null}}


id: PATO:0000407
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature.","definition_xrefs":["web:http://www.merriam-webster.com/"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flattened","termid":"PATO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flat","synonyms":[{"name":"plate-like","type":"related"}],"termid":"PATO:0000407"}


id: GO:1903933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of DNA primase activity.","definition_xrefs":["PMID:14766746","GOC:TermGenie","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of DNA primase activity (obsolete GO:1903933)","synonyms":[{"name":"down regulation of DNA primase activity","type":"exact"},{"name":"down-regulation of DNA primase activity","type":"exact"},{"name":"downregulation of DNA primase activity","type":"exact"},{"name":"inhibition of DNA primase activity","type":"narrow"}],"termid":"GO:1903933"}


id: PBO:0047812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box N1","termid":"PBO:0047812"}


id: PBO:0082277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Anthranilate phosphoribosyl transferase; transferase of the tryptophan biosynthetic pathway; catalyzes the phosphoribosylation of anthranilate; subject to the general control system of amino acid biosynthesis","termid":"PBO:0082277"}


id: GO:0032831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of differentiation of CD4-positive, CD25-positive, alpha-beta regulatory T cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation","termid":"GO:0032829"},{"relation_name":"is_a","term_name":"positive regulation of CD4-positive, alpha-beta T cell differentiation","termid":"GO:0043372"},{"relation_name":"is_a","term_name":"positive regulation of regulatory T cell differentiation","termid":"GO:0045591"},{"relation_name":"positively_regulates","term_name":"CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation","termid":"GO:0002361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation","synonyms":[{"name":"activation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation","type":"narrow"},{"name":"positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell development","type":"related"},{"name":"positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte differentiation","type":"exact"},{"name":"positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-cell differentiation","type":"exact"},{"name":"positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte differentiation","type":"exact"},{"name":"stimulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation","type":"narrow"},{"name":"up regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation","type":"exact"},{"name":"up-regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation","type":"exact"},{"name":"upregulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation","type":"exact"}],"termid":"GO:0032831"}


id: GO:0072645
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interferon-delta due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:BHF","GOC:mah","PMID:15546383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"type I interferon production","termid":"GO:0032606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"interferon-delta production","secondary_identifiers":["GO:0072646"],"synonyms":[{"name":"IFN-delta production","type":"exact"},{"name":"IFND production","type":"exact"},{"name":"interferon-delta secretion","type":"narrow"}],"termid":"GO:0072645"}


id: PBO:0081295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 75D","termid":"PBO:0081295"}


id: SO:0001510
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A change in chromosomes that occurs between two separate chromosomes.","direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal_variation_attribute","termid":"SO:0001509"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intrachromosomal","termid":"SO:0001510"}


id: FYPO:0007995
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the old cell tip does not occur during interphase of the mitotic cell cycle.","definition_xrefs":["PMID:15184402","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to cell tip during mitotic interphase","termid":"FYPO:0003329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to old cell tip during mitotic interphase","termid":"FYPO:0007995"}


id: GO:1900550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of N',N'',N'''-triacetylfusarinine C.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"N',N'',N'''-triacetylfusarinine C metabolic process","termid":"GO:1900549"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"N',N'',N'''-triacetylfusarinine C catabolic process","synonyms":[{"name":"N',N'',N'''-triacetylfusarinine C breakdown","type":"exact"},{"name":"N',N'',N'''-triacetylfusarinine C catabolism","type":"exact"},{"name":"N',N'',N'''-triacetylfusarinine C degradation","type":"exact"}],"termid":"GO:1900550"}


id: FYECO:0000375
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which streptonigrin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ streptonigrin","termid":"FYECO:0000375"}


id: PBO:0060287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin light chain 4","termid":"PBO:0060287"}


id: GO:1903097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency or extent of the formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin. This specialised chromatin occurs at centromeric region in point centromeres, and the central core in modular centromeres.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24710126"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of CENP-A containing nucleosome assembly (obsolete GO:1903097)","synonyms":[{"name":"regulation of CENP-A deposition","type":"related"},{"name":"regulation of CENP-A loading","type":"related"},{"name":"regulation of CenH3-containing nucleosome assembly at centromere","type":"related"},{"name":"regulation of DNA replication-independent nucleosome assembly at centromere","type":"exact"},{"name":"regulation of centromere specific nucleosome exchange","type":"related"},{"name":"regulation of centromere-specific histone exchange","type":"exact"},{"name":"regulation of centromere-specific nucleosome assembly","type":"exact"},{"name":"regulation of centromeric DNA replication-independent nucleosome assembly","type":"exact"}],"termid":"GO:1903097"}


id: PBO:0090976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type ATPase V1 subunit H","termid":"PBO:0090976"}


id: GO:0061160
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the establishment of bipolar cell polarity that contributes to the shape of a cell.","definition_xrefs":["GOC:vw","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of establishment of bipolar cell polarity","termid":"GO:0061172"},{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of bipolar cell polarity regulating cell shape","termid":"GO:2000100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"regulation of establishment of bipolar cell polarity regulating cell shape","termid":"GO:0061160"}


id: GO:0047542
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-furoyl-CoA + A + H2O = 5-hydroxy-2-furoyl-CoA + AH(2) + H+.","definition_xrefs":["RHEA:21480","EC:1.3.99.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-furoyl-CoA dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R02987","MetaCyc:2-FUROYL-COA-DEHYDROGENASE-RXN"],"synonyms":[{"name":"2-furoyl coenzyme A dehydrogenase activity","type":"related"},{"name":"2-furoyl coenzyme A hydroxylase activity","type":"related"},{"name":"2-furoyl-CoA:(acceptor) 5-oxidoreductase (hydroxylating)","type":"related"},{"name":"2-furoyl-CoA:acceptor 5-oxidoreductase (hydroxylating)","type":"related"},{"name":"furoyl-CoA hydroxylase activity","type":"related"}],"termid":"GO:0047542"}


id: GO:0046721
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of formic acid, HCOOH, by a cell or a tissue.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formate transport","termid":"GO:0015724"},{"relation_name":"is_a","term_name":"acid secretion","termid":"GO:0046717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"formic acid secretion","synonyms":[{"name":"formate secretion","type":"exact"}],"termid":"GO:0046721"}


id: SO:0000096
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene from proplastid sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"proplastid_sequence","termid":"SO:0000748"},{"relation_name":"is_a","term_name":"plastid_gene","termid":"SO:0000090"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proplastid_gene","synonyms":[{"name":"proplastid gene","type":"exact"}],"termid":"SO:0000096"}


id: GO:1905192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chloroplast fission.","definition_xrefs":["GOC:TermGenie","PMID:26862170","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle organization","termid":"GO:0033043"},{"relation_name":"regulates","term_name":"chloroplast fission","termid":"GO:0010020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of chloroplast fission","synonyms":[{"name":"regulation of chloroplast division","type":"exact"}],"termid":"GO:1905192"}


id: GO:0006175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine deoxyribonucleotide biosynthetic process","termid":"GO:0009153"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside triphosphate biosynthetic process","termid":"GO:0009216"},{"relation_name":"is_a","term_name":"dATP metabolic process","termid":"GO:0046060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"dATP biosynthetic process","synonyms":[{"name":"dATP anabolism","type":"exact"},{"name":"dATP biosynthesis","type":"exact"},{"name":"dATP formation","type":"exact"},{"name":"dATP synthesis","type":"exact"}],"termid":"GO:0006175"}


id: GO:0043270
data:
  {"annotated_genes":["SJAG_04551"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98239],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905665"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of monoatomic ion transport","termid":"GO:0043269"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"positively_regulates","term_name":"monoatomic ion transport","termid":"GO:0006811"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04551":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of monoatomic ion transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of ion transport","type":"narrow"},{"name":"stimulation of ion transport","type":"narrow"},{"name":"up regulation of ion transport","type":"exact"},{"name":"up-regulation of ion transport","type":"exact"},{"name":"upregulation of ion transport","type":"exact"}],"termid":"GO:0043270","terms_by_termid":{"GO:1905665":null}}


id: PBO:0057561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 718","termid":"PBO:0057561"}


id: GO:1900656
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of diorcinol biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"negative regulation of secondary metabolite biosynthetic process","termid":"GO:1900377"},{"relation_name":"is_a","term_name":"regulation of diorcinol biosynthetic process","termid":"GO:1900655"},{"relation_name":"negatively_regulates","term_name":"diorcinol biosynthetic process","termid":"GO:1900572"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0044281"],"is_obsolete":false,"name":"negative regulation of diorcinol biosynthetic process","synonyms":[{"name":"down regulation of diorcinol anabolism","type":"exact"},{"name":"down regulation of diorcinol biosynthesis","type":"exact"},{"name":"down regulation of diorcinol biosynthetic process","type":"exact"},{"name":"down regulation of diorcinol formation","type":"exact"},{"name":"down regulation of diorcinol synthesis","type":"exact"},{"name":"down-regulation of diorcinol anabolism","type":"exact"},{"name":"down-regulation of diorcinol biosynthesis","type":"exact"},{"name":"down-regulation of diorcinol biosynthetic process","type":"exact"},{"name":"down-regulation of diorcinol formation","type":"exact"},{"name":"down-regulation of diorcinol synthesis","type":"exact"},{"name":"downregulation of diorcinol anabolism","type":"exact"},{"name":"downregulation of diorcinol biosynthesis","type":"exact"},{"name":"downregulation of diorcinol biosynthetic process","type":"exact"},{"name":"downregulation of diorcinol formation","type":"exact"},{"name":"downregulation of diorcinol synthesis","type":"exact"},{"name":"inhibition of diorcinol anabolism","type":"exact"},{"name":"inhibition of diorcinol biosynthesis","type":"exact"},{"name":"inhibition of diorcinol biosynthetic process","type":"narrow"},{"name":"inhibition of diorcinol formation","type":"exact"},{"name":"inhibition of diorcinol synthesis","type":"exact"},{"name":"negative regulation of diorcinol anabolism","type":"exact"},{"name":"negative regulation of diorcinol biosynthesis","type":"exact"},{"name":"negative regulation of diorcinol formation","type":"exact"},{"name":"negative regulation of diorcinol synthesis","type":"exact"}],"termid":"GO:1900656"}


id: GO:0050437
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate + H2O = (-)-endo-fenchol + diphosphate.","definition_xrefs":["RHEA:20565","EC:4.2.3.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"(-)-endo-fenchol synthase activity","secondary_identifiers":["KEGG_REACTION:R02004","MetaCyc:4.2.3.10-RXN"],"synonyms":[{"name":"(-)-endo-fenchol cyclase activity","type":"related"},{"name":"geranyl pyrophosphate:(-)-endo-fenchol cyclase activity","type":"related"},{"name":"geranyl-diphosphate diphosphate-lyase [cyclizing, (-)-endo-fenchol-forming]","type":"related"}],"termid":"GO:0050437"}


id: PBO:0000957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-8 sterol isomerase Erg2","termid":"PBO:0000957"}


id: GO:0075299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of frequency, rate or extent of zygospore formation, a process in which a thick-walled spore of some algae and fungi is formed by union of two similar sexual cells, usually serves as a resting spore, and produces the sporophytic phase.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043941"},{"relation_name":"is_a","term_name":"regulation of zygospore formation","termid":"GO:0075298"},{"relation_name":"positively_regulates","term_name":"zygospore formation","termid":"GO:0034296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of zygospore formation","termid":"GO:0075299"}


id: PBO:0041685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calbindin 2","termid":"PBO:0041685"}


id: PR:O13702
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glycerol dehydrogenase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00898"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol dehydrogenase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13F5.03c","secondary_identifiers":["UniProtKB:O13702"],"synonyms":[{"name":"GDH (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GLDH (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-gldA","type":"exact"}],"termid":"PR:O13702"}


id: PBO:0049809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HDAC2 and HS3ST5 antisense RNA 2","termid":"PBO:0049809"}


id: GO:0015862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of uridine, uracil riboside, across a lipid bilayer, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside transport","termid":"GO:0015864"},{"relation_name":"is_a","term_name":"pyrimidine-containing compound transmembrane transport","termid":"GO:0072531"},{"relation_name":"is_a","term_name":"nucleoside transmembrane transport","termid":"GO:1901642"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"uridine transmembrane transport","termid":"GO:0015862"}


id: PBO:0079773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-glucose ceramide glucosyltransferase","termid":"PBO:0079773"}


