# terms

id: GO:0031300
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the organelle membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of organelle membrane (obsolete GO:0031300)","synonyms":[{"name":"intrinsic to organelle membrane","type":"narrow"}],"termid":"GO:0031300"}


id: PBO:0056237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane associated guanylate kinase, WW and PDZ domain containing 3","termid":"PBO:0056237"}


id: GO:0008396
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an oxysterol + NADPH + O2 = 7-alpha-hydroxylated oxysterol + NADP+ + H2O.","definition_xrefs":["PMID:10882791"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid hydroxylase activity","termid":"GO:0008395"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"oxysterol 7-alpha-hydroxylase activity","secondary_identifiers":["Reactome:R-HSA-191972","Reactome:R-HSA-192178","Reactome:R-HSA-5602885","Reactome:R-HSA-192065"],"synonyms":[{"name":"cytochrome P450 CYP7B1","type":"narrow"}],"termid":"GO:0008396"}


id: GO:1900994
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (-)-secologanin.","definition_xrefs":["GOC:TermGenie","GOC:yaf","PMID:24104568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoterpenoid biosynthetic process","termid":"GO:0016099"},{"relation_name":"is_a","term_name":"aldehyde biosynthetic process","termid":"GO:0046184"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"},{"relation_name":"is_a","term_name":"beta-glucoside biosynthetic process","termid":"GO:1901806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"(-)-secologanin biosynthetic process","synonyms":[{"name":"(-)-secologanin anabolism","type":"exact"},{"name":"(-)-secologanin biosynthesis","type":"exact"},{"name":"(-)-secologanin formation","type":"exact"},{"name":"(-)-secologanin synthesis","type":"exact"}],"termid":"GO:1900994"}


id: GO:0003811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any of a set of activities involved in the complement cascade.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete complement activity (obsolete GO:0003811)","synonyms":[{"name":"complement activity","type":"exact"}],"termid":"GO:0003811"}


id: PBO:0049033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 20","termid":"PBO:0049033"}


id: GO:0015857
data:
  {"annotated_genes":["SJAG_03970","SJAG_04714"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84124],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905530"},{"annotations":[84481,91594],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098721"}]},"cv_name":"biological_process","definition":"The directed movement of uracil, 2,4-dioxopyrimidine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase transport","termid":"GO:0015855"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03970":null,"SJAG_04714":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"uracil transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015857","terms_by_termid":{"GO:0098721":null,"GO:1905530":null}}


id: PBO:0047012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A15, pseudogene","termid":"PBO:0047012"}


id: GO:0030435
data:
  {"annotated_genes":["SJAG_02248","SJAG_02736","SJAG_04184","SJAG_00114","SJAG_04922","SJAG_00405","SJAG_00486","SJAG_02169","SJAG_00663","SJAG_03688","SJAG_04470","SJAG_02320","SJAG_03536","SJAG_04868","SJAG_04483","SJAG_00821","SJAG_01531","SJAG_03746","SJAG_04080","SJAG_03483","SJAG_02529","SJAG_04615","SJAG_02241","SJAG_00993","SJAG_04238","SJAG_04140","SJAG_01662","SJAG_04271","SJAG_03587","SJAG_00971","SJAG_01017","SJAG_04853","SJAG_04901","SJAG_01769","SJAG_04781","SJAG_03250","SJAG_02712","SJAG_04859","SJAG_04236","SJAG_04010","SJAG_00826","SJAG_01321","SJAG_04275","SJAG_02718","SJAG_05309","SJAG_03057","SJAG_03013","SJAG_03090","SJAG_03915","SJAG_03557","SJAG_01483","SJAG_00974"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107466],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0072316"},{"annotations":[91422,92939,96817,101242,93009,107665,92586,106259,110098,114715,103856,100250,108867],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030437"},{"annotations":[107467],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071998"},{"annotations":[90508],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034413"},{"annotations":[84248,87792,113971,84738,86278],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030476"},{"annotations":[105441],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034412"},{"annotations":[105215,113972,100293,110248,113981],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070591"},{"annotations":[105442,106260,101092,87523,93662],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031321"},{"annotations":[87314,95920,93663,95989,113113,115017,106261,101409,95919,114716,91423,103520,97801,94909,110099,115201,93622],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032120"},{"annotations":[103857,92940,93623,99030,88316,95922,102957,110100,100251,95921],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031322"},{"annotations":[90066,107468],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0072000"},{"annotations":[107349],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0075297"},{"annotations":[98391],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0075296"},{"annotations":[86759],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903024"},{"annotations":[88211],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0034307"},{"annotations":[96206,112147,90550,95924,95923,102134],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070583"}]},"cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and desiccation resistance, and/or for reproduction.","definition_xrefs":["ISBN:0072992913","GOC:pamgo_curators","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sporulation","termid":"GO:0043934"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"}],"gene_count":52,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00405":null,"SJAG_00486":null,"SJAG_00663":null,"SJAG_00821":null,"SJAG_00826":null,"SJAG_00971":null,"SJAG_00974":null,"SJAG_00993":null,"SJAG_01017":null,"SJAG_01321":null,"SJAG_01483":null,"SJAG_01531":null,"SJAG_01662":null,"SJAG_01769":null,"SJAG_02169":null,"SJAG_02241":null,"SJAG_02248":null,"SJAG_02320":null,"SJAG_02529":null,"SJAG_02712":null,"SJAG_02718":null,"SJAG_02736":null,"SJAG_03013":null,"SJAG_03057":null,"SJAG_03090":null,"SJAG_03250":null,"SJAG_03483":null,"SJAG_03536":null,"SJAG_03557":null,"SJAG_03587":null,"SJAG_03688":null,"SJAG_03746":null,"SJAG_03915":null,"SJAG_04010":null,"SJAG_04080":null,"SJAG_04140":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04238":null,"SJAG_04271":null,"SJAG_04275":null,"SJAG_04470":null,"SJAG_04483":null,"SJAG_04615":null,"SJAG_04781":null,"SJAG_04853":null,"SJAG_04859":null,"SJAG_04868":null,"SJAG_04901":null,"SJAG_04922":null,"SJAG_05309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sporulation resulting in formation of a cellular spore","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Sporogenesis"],"synonyms":[{"name":"cellular spore formation by sporulation","type":"exact"},{"name":"spore biosynthesis","type":"exact"},{"name":"spore differentiation","type":"exact"},{"name":"spore formation","type":"exact"}],"termid":"GO:0030435","terms_by_termid":{"GO:0030437":null,"GO:0030476":null,"GO:0031321":null,"GO:0031322":null,"GO:0032120":null,"GO:0034307":null,"GO:0034412":null,"GO:0034413":null,"GO:0070583":null,"GO:0070591":null,"GO:0071998":null,"GO:0072000":null,"GO:0072316":null,"GO:0075296":null,"GO:0075297":null,"GO:1903024":null}}


id: GO:1904713
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a beta-catenin destruction complex.","definition_xrefs":["PMID:22899650","GOC:PARL","GOC:TermGenie","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"beta-catenin destruction complex binding","synonyms":[{"name":"23S APC complex binding","type":"narrow"},{"name":"APC-Axin-1-beta-catenin complex binding","type":"exact"},{"name":"Axin-APC-beta-catenin-GSK3B complex binding","type":"exact"},{"name":"BDC binding","type":"exact"},{"name":"beta-catenin degradation complex binding","type":"exact"}],"termid":"GO:1904713"}


id: PBO:0079072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Trp (anticodon CCA) 6-1","termid":"PBO:0079072"}


id: PBO:0000610
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.16","termid":"PBO:0000610"}


id: PBO:0086190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein similar to heat shock transcription factor; multicopy suppressor of pseudohyphal growth defects of ammonium permease mutants","termid":"PBO:0086190"}


id: PBO:0076625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBCEL-TECTA readthrough","termid":"PBO:0076625"}


id: GO:0046261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of 4-nitrotoluene, 1-methyl-4-nitrobenzene.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-nitrotoluene biosynthetic process (obsolete GO:0046261)","synonyms":[{"name":"4-nitrotoluene anabolism","type":"exact"},{"name":"4-nitrotoluene biosynthesis","type":"exact"},{"name":"4-nitrotoluene biosynthetic process","type":"exact"},{"name":"4-nitrotoluene formation","type":"exact"},{"name":"4-nitrotoluene synthesis","type":"exact"},{"name":"4NT biosynthesis","type":"exact"},{"name":"4NT biosynthetic process","type":"exact"}],"termid":"GO:0046261"}


id: GO:0048678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus.","definition_xrefs":["GOC:dgh","GOC:jid","GOC:lm","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to wounding","termid":"GO:0009611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to axon injury","termid":"GO:0048678"}


id: PBO:0017416
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-derives_from","termid":"PBO:0017416"}


id: PBO:0089726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unknown with similarity to bacterial carboxy-cis,cis-muconate cyclase","termid":"PBO:0089726"}


id: GO:0039008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a pronephric nephron tubule are generated and organized from an epithelium. A pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron.","definition_xrefs":["GOC:mtg_kidney_jan10","ZFA:00001558"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule morphogenesis","termid":"GO:0072078"},{"relation_name":"part_of","term_name":"pronephric nephron morphogenesis","termid":"GO:0039007"},{"relation_name":"part_of","term_name":"pronephric nephron tubule development","termid":"GO:0039020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pronephric nephron tubule morphogenesis","termid":"GO:0039008"}


id: PBO:0073907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 15 member 5","termid":"PBO:0073907"}


id: PBO:0089409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, ATP:ADP antiporter Anc1","termid":"PBO:0089409"}


id: PBO:0084628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Methylglyoxalase that converts methylglyoxal to D-lactate; involved in oxidative stress resistance, diauxic shift, and stationary phase survival; has similarity to E. coli Hsp31 and C. albicans Glx3p; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease and cancer; exists as a dimer and contains a putative metal-binding site; protein abundance increases in response to DNA replication stress","termid":"PBO:0084628"}


id: GO:1902133
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving (+)-secoisolariciresinol.","definition_xrefs":["GOC:TermGenie","PMID:9872995","PMID:15949826"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignan metabolic process","termid":"GO:0009806"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"diol metabolic process","termid":"GO:0034311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0044281"],"is_obsolete":false,"name":"(+)-secoisolariciresinol metabolic process","synonyms":[{"name":"(+)-secoisolariciresinol metabolism","type":"exact"}],"termid":"GO:1902133"}


id: PBO:0057754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1913","termid":"PBO:0057754"}


id: GO:1900771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of fumitremorgin B.","definition_xrefs":["GOC:di","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete fumitremorgin B catabolic process (obsolete GO:1900771)","synonyms":[{"name":"Lanosulin breakdown","type":"related"},{"name":"Lanosulin catabolic process","type":"related"},{"name":"Lanosulin catabolism","type":"related"},{"name":"Lanosulin degradation","type":"related"},{"name":"fumitremorgin B breakdown","type":"exact"},{"name":"fumitremorgin B catabolism","type":"exact"},{"name":"fumitremorgin B degradation","type":"exact"}],"termid":"GO:1900771"}


id: GO:0140494
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A vesicular organelle that forms on retraction fibers behind migrating cells and mediates the release of cytoplasmic contents during cell migration.","definition_xrefs":["PMID:25342562","PMID:31371827"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"migrasome","termid":"GO:0140494"}


id: GO:0060397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which STAT proteins (Signal Transducers and Activators of Transcription) are activated by members of the JAK (janus activated kinase) family of tyrosine kinases, following the binding of physiological ligands to the growth hormone receptor. Once activated, STATs dimerize and translocate to the nucleus and modulate the expression of target genes.","definition_xrefs":["GOC:BHF","GOC:dph","PMID:11445442"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth hormone receptor signaling pathway","termid":"GO:0060396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"growth hormone receptor signaling pathway via JAK-STAT","synonyms":[{"name":"JAK-STAT cascade involved in growth hormone signalling pathway","type":"exact"}],"termid":"GO:0060397"}


id: PBO:0034427
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-requires_localization_(obsolete_requires_localization)","termid":"PBO:0034427"}


id: GO:2000154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of flagellar cell motility.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of flagellar cell motility (obsolete GO:2000154)","synonyms":[{"name":"negative regulation of flagellar cell motility","type":"exact"}],"termid":"GO:2000154"}


id: GO:0009901
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dehiscence of an anther to release the pollen grains contained within it.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dehiscence","termid":"GO:0009900"},{"relation_name":"part_of","term_name":"anther development","termid":"GO:0048653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anther dehiscence","termid":"GO:0009901"}


id: GO:1900020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein kinase C activity.","definition_xrefs":["GOC:signaling","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein serine/threonine kinase activity","termid":"GO:0071902"},{"relation_name":"is_a","term_name":"regulation of protein kinase C activity","termid":"GO:1900019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein kinase C activity","synonyms":[{"name":"positive regulation of PKC","type":"related"},{"name":"positive regulation of PKC activity","type":"exact"},{"name":"up regulation of PKC","type":"related"},{"name":"up regulation of PKC activity","type":"exact"}],"termid":"GO:1900020"}


id: GO:0060771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The radial pattern formation process that results in the formation of plant organs (leaves or leaf-like structures) or flower primordia around a central axis.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radial pattern formation","termid":"GO:0009956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phyllotactic patterning","termid":"GO:0060771"}


id: PBO:0031628
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_sporulation","termid":"PBO:0031628"}


id: GO:0008766
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.","definition_xrefs":["RHEA:28374"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity","secondary_identifiers":["EC:6.3.2.10","MetaCyc:UDP-NACMURALGLDAPAALIG-RXN"],"termid":"GO:0008766"}


id: PBO:0003279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AFG1 family mitochondrial ATPase (predicted)","termid":"PBO:0003279"}


id: PBO:0052949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinase suppressor of ras 1","termid":"PBO:0052949"}


id: FYPO:0004273
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of ascospore release from an ascus is decreased.","definition_xrefs":["PomBase:mah","GO:0071998"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal ascospore release from ascus","termid":"FYPO:0004272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"decreased ascospore release from ascus","synonyms":[{"name":"reduced ascospore release from ascus","type":"exact"}],"termid":"FYPO:0004273"}


id: GO:0090377
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of an epidermal cell becomes restricted such that it will develop into a seed trichome, causing a change in the orientation of cell division in the ovule epidermis at or just before anthesis.","definition_xrefs":["PMID:17905721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"cell fate commitment","termid":"GO:0045165"},{"relation_name":"part_of","term_name":"seed trichome differentiation","termid":"GO:0090376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"seed trichome initiation","synonyms":[{"name":"seed trichome fate commitment","type":"exact"}],"termid":"GO:0090377"}


id: PBO:0109126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basonuclin zinc finger protein 2","termid":"PBO:0109126"}


id: GO:0044722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The elimination of phosphate ions from peritubular capillaries (or surrounding hemolymph in invertebrates) into the renal tubules to be incorporated subsequently into the urine.","definition_xrefs":["GOC:jl","PMID:25287933"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal tubular secretion","termid":"GO:0097254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal phosphate excretion","synonyms":[{"name":"renal phosphate ion excretion","type":"exact"}],"termid":"GO:0044722"}


id: FYPO:0002943
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is shaped in the form of a spheroid, and has a larger volume than normal, when the cell undergoes transition from G0 phase to G1. In spheroid cells, there is much less difference between the long and short axes of the cell than in wild type. Spheroid cells may shorter than normal, with approximately the same diameter as normal, or they may be enlarged.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"swollen spheroid cell","termid":"FYPO:0002941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000005","FYPO:0001985"],"is_obsolete":false,"name":"swollen spheroid cell during G0 to G1 transition","synonyms":[{"name":"large spheroid cell during G0 to G1 transition","type":"related"},{"name":"enlarged spheroid cell during G0 to G1 transition","type":"related"},{"name":"enlarged volume spheroid cell during G0 to G1 transition","type":"exact"},{"name":"spheroid cell with increased cell size during G0 to G1 transition","type":"related"},{"name":"spheroid cell with increased cell volume during G0 to G1 transition","type":"exact"},{"name":"swollen rounded cell during G0 to G1 transition","type":"exact"},{"name":"swollen spheroid cell during cell cycle re-entry","type":"exact"},{"name":"swollen spheroid cell during cell quiescence to G1 transition","type":"exact"},{"name":"swollen spheroid cell during exit from cell quiescence","type":"exact"},{"name":"swollen spheroid cell during quiescence to G1 transition","type":"exact"},{"name":"swollen spheroid cell during recovery from quiescence","type":"exact"}],"termid":"FYPO:0002943"}


id: PBO:0063416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDE2A antisense RNA 1","termid":"PBO:0063416"}


id: FYPO:0006912
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing clomiphene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0002060","FYPO:0000257","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on clomiphene","synonyms":[{"name":"normal cell population growth in presence of clomiphene","type":"exact"},{"name":"normal cell population growth on clomiphene","type":"exact"},{"name":"normal cellular response to clomiphene","type":"related"},{"name":"normal vegetative cell population growth on clomiphene","type":"exact"}],"termid":"FYPO:0006912"}


id: GO:1903744
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anterograde synaptic vesicle transport.","definition_xrefs":["GOC:kmv","GO_REF:0000058","PMID:25329901","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vesicle transport along microtubule","termid":"GO:1901610"},{"relation_name":"is_a","term_name":"positive regulation of synaptic vesicle transport","termid":"GO:1902805"},{"relation_name":"is_a","term_name":"regulation of anterograde synaptic vesicle transport","termid":"GO:1903742"},{"relation_name":"positively_regulates","term_name":"anterograde synaptic vesicle transport","termid":"GO:0048490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of anterograde synaptic vesicle transport","synonyms":[{"name":"activation of anterograde synaptic vesicle transport","type":"narrow"},{"name":"up regulation of anterograde synaptic vesicle transport","type":"exact"},{"name":"up-regulation of anterograde synaptic vesicle transport","type":"exact"},{"name":"upregulation of anterograde synaptic vesicle transport","type":"exact"}],"termid":"GO:1903744"}


id: PBO:0085936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; mRNA identified as translated by ribosome profiling data; SWAT-GFP fusion protein localizes to the endoplasmic reticulum","termid":"PBO:0085936"}


id: PBO:0045274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 25","termid":"PBO:0045274"}


id: PBO:0071712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 10","termid":"PBO:0071712"}


id: PBO:0070402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RP2 activator of ARL3 GTPase","termid":"PBO:0070402"}


id: SO:0000917
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to insert a U.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000917 insert_U (obsolete SO:0000917)","synonyms":[{"name":"insert U","type":"exact"}],"termid":"SO:0000917"}


id: PBO:0058777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7111","termid":"PBO:0058777"}


id: PR:G2TRN4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- erh1 gene.","definition_xrefs":["UniProtKB:G2TRN4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer of rudimentary homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19G12.17","synonyms":[{"name":"Spom972h-erh1","type":"exact"}],"termid":"PR:G2TRN4"}


id: PBO:0028563
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_meiotic_DNA_double-strand_break_formation","termid":"PBO:0028563"}


id: PBO:0071993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 22","termid":"PBO:0071993"}


id: GO:0050033
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-rhamnono-1,4-lactone + H2O = L-rhamnonate + H+.","definition_xrefs":["EC:3.1.1.65","RHEA:10288"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"L-rhamnono-1,4-lactonase activity","secondary_identifiers":["KEGG_REACTION:R03772","MetaCyc:L-RHAMNONO-14-LACTONASE-RXN"],"synonyms":[{"name":"L-rhamno-gamma-lactonase activity","type":"related"},{"name":"L-rhamnono-1,4-lactone lactonohydrolase activity","type":"related"},{"name":"L-rhamnono-gamma-lactonase activity","type":"related"}],"termid":"GO:0050033"}


id: PBO:0002042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L32 (predicted)","termid":"PBO:0002042"}


id: GO:0021915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dgh","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"is_a","term_name":"epithelium development","termid":"GO:0060429"},{"relation_name":"part_of","term_name":"nervous system development","termid":"GO:0007399"},{"relation_name":"part_of","term_name":"chordate embryonic development","termid":"GO:0043009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural tube development","termid":"GO:0021915"}


id: PBO:0014303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMR domain protein, possibly involved in DNA repair and neddylation","termid":"PBO:0014303"}


id: PBO:0060161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-RNR2 like 9 (pseudogene)","termid":"PBO:0060161"}


id: GO:0120069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of any stomach fundus smooth muscle contraction.","definition_xrefs":["GOC:sl","PMID:15890336"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of stomach fundus smooth muscle contraction","termid":"GO:0120068"},{"relation_name":"is_a","term_name":"positive regulation of gastro-intestinal system smooth muscle contraction","termid":"GO:1904306"},{"relation_name":"positively_regulates","term_name":"stomach fundus smooth muscle contraction","termid":"GO:0014825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of stomach fundus smooth muscle contraction","termid":"GO:0120069"}


id: PBO:0004905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GET complex subunit Get1 (predicted)","termid":"PBO:0004905"}


id: PBO:0046814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coagulation factor XIII B chain","termid":"PBO:0046814"}


id: GO:1900819
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving orlandin.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"orlandin metabolic process","synonyms":[{"name":"orlandin metabolism","type":"exact"}],"termid":"GO:1900819"}


id: PATO:0000532
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000532 micronutrient sensitivity value (obsolete PATO:0000532)","termid":"PATO:0000532"}


id: FYPO:0005696
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which nucleation of cytoplasmic microtubules from the interphase microtubule organizing center does not occur. Normally, microtubules are nucleated from interphase microtubule organizing centers (iMTOCs) and from the cytoplasmic face of the spindle pole body (SPB).","definition_xrefs":["PMID:19001497","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cytoplasmic interphase microtubule nucleation","termid":"FYPO:0004766"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0000054"],"is_obsolete":false,"name":"abolished cytoplasmic microtubule nucleation from iMTOC","synonyms":[{"name":"abolished cytoplasmic interphase microtubule nucleation from iMTOC","type":"exact"},{"name":"abolished cytoplasmic microtubule nucleation from iMTOC during mitotic interphase","type":"exact"},{"name":"abolished interphase cytoplasmic microtubule nucleation from iMTOC","type":"exact"},{"name":"abolished interphase microtubule nucleation from iMTOC during mitotic cell cycle","type":"exact"},{"name":"abolished interphase microtubule nucleation from iMTOC during vegetative growth","type":"exact"},{"name":"abolished microtubule nucleation from interphase microtubule organizing center","type":"exact"},{"name":"abolished microtubule nucleation from interphase microtubule organizing centre","type":"exact"},{"name":"cytoplasmic microtubule nucleation from iMTOC abolished","type":"exact"}],"termid":"FYPO:0005696"}


id: PR:O94474
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tetratricopeptide repeat protein 37 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"superkiller protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1919.05","secondary_identifiers":["UniProtKB:O94474"],"synonyms":[{"name":"Spom972h-TTC37","type":"exact"}],"termid":"PR:O94474"}


id: PBO:0047678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"filamin B","termid":"PBO:0047678"}


id: PBO:0041682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer antigen 1","termid":"PBO:0041682"}


id: PBO:0077031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonine synthase like 2","termid":"PBO:0077031"}


id: PBO:0071821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 16","termid":"PBO:0071821"}


id: PBO:0070708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L9 pseudogene 13","termid":"PBO:0070708"}


id: GO:0030194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of blood coagulation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of blood coagulation","termid":"GO:0030193"},{"relation_name":"is_a","term_name":"positive regulation of coagulation","termid":"GO:0050820"},{"relation_name":"is_a","term_name":"positive regulation of wound healing","termid":"GO:0090303"},{"relation_name":"is_a","term_name":"positive regulation of hemostasis","termid":"GO:1900048"},{"relation_name":"positively_regulates","term_name":"blood coagulation","termid":"GO:0007596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of blood coagulation","synonyms":[{"name":"activation of blood coagulation","type":"narrow"},{"name":"stimulation of blood coagulation","type":"narrow"},{"name":"up regulation of blood coagulation","type":"exact"},{"name":"up-regulation of blood coagulation","type":"exact"},{"name":"upregulation of blood coagulation","type":"exact"}],"termid":"GO:0030194"}


id: FYPO:0003590
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which vacuoles are smaller than normal during sporulation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small vacuoles","termid":"FYPO:0002787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"small vacuoles during sporulation","synonyms":[{"name":"vacuoles present in increased numbers, with decreased vacuole size, during sporulation","type":"exact"}],"termid":"FYPO:0003590"}


id: GO:0170041
data:
  {"annotated_genes":["SJAG_00392","SJAG_03293","SJAG_04577","SJAG_04827","SJAG_03671","SJAG_00636","SJAG_01592","SJAG_02496","SJAG_03434","SJAG_00043","SJAG_02290","SJAG_00695","SJAG_03398","SJAG_03102","SJAG_02972","SJAG_00635","SJAG_04459","SJAG_04042","SJAG_00674","SJAG_04546","SJAG_01019","SJAG_03288","SJAG_01461","SJAG_00412"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99560,114567,94245,102637,106611,107226,108064,98726,94236],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042450"},{"annotations":[109369,93420],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019547"},{"annotations":[106612],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000053"},{"annotations":[94246],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019240"},{"annotations":[110912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046436"},{"annotations":[110913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019478"},{"annotations":[83445,110914],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046416"},{"annotations":[83638],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036088"},{"annotations":[110915],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902114"},{"annotations":[84457,83480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009450"},{"annotations":[87727],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009448"},{"annotations":[86058,98836],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050667"},{"annotations":[96762],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019280"},{"annotations":[99715],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019281"},{"annotations":[110104],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019279"},{"annotations":[106653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019283"},{"annotations":[108067],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006592"},{"annotations":[107322],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006591"},{"annotations":[84926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033387"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving non-proteingenic amino acids.","definition_xrefs":["GOC:ew"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid metabolic process","termid":"GO:0006520"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_00392":null,"SJAG_00412":null,"SJAG_00635":null,"SJAG_00636":null,"SJAG_00674":null,"SJAG_00695":null,"SJAG_01019":null,"SJAG_01461":null,"SJAG_01592":null,"SJAG_02290":null,"SJAG_02496":null,"SJAG_02972":null,"SJAG_03102":null,"SJAG_03288":null,"SJAG_03293":null,"SJAG_03398":null,"SJAG_03434":null,"SJAG_03671":null,"SJAG_04042":null,"SJAG_04459":null,"SJAG_04546":null,"SJAG_04577":null,"SJAG_04827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"non-proteinogenic amino acid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"non-proteinogenic amino acid metabolism","type":"exact"}],"termid":"GO:0170041","terms_by_termid":{"GO:0000053":null,"GO:0006591":null,"GO:0006592":null,"GO:0009448":null,"GO:0009450":null,"GO:0019240":null,"GO:0019279":null,"GO:0019280":null,"GO:0019281":null,"GO:0019283":null,"GO:0019478":null,"GO:0019547":null,"GO:0033387":null,"GO:0036088":null,"GO:0042450":null,"GO:0046416":null,"GO:0046436":null,"GO:0050667":null,"GO:1902114":null}}


id: PBO:0081105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZEB1 transcriptional regulator RNA","termid":"PBO:0081105"}


id: PBO:0047075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 133 member D, pseudogene","termid":"PBO:0047075"}


id: PBO:0029176
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_peptide-serine-N-acetyltransferase_activity","termid":"PBO:0029176"}


id: GO:0032742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-19 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-19 production","termid":"GO:0032662"},{"relation_name":"positively_regulates","term_name":"interleukin-19 production","termid":"GO:0032622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-19 production","secondary_identifiers":["GO:0045386"],"synonyms":[{"name":"activation of interleukin-19 production","type":"narrow"},{"name":"positive regulation of IL-19 production","type":"exact"},{"name":"positive regulation of interleukin-19 biosynthetic process","type":"narrow"},{"name":"stimulation of interleukin-19 production","type":"narrow"},{"name":"up regulation of interleukin-19 production","type":"exact"},{"name":"up-regulation of interleukin-19 production","type":"exact"},{"name":"upregulation of interleukin-19 production","type":"exact"}],"termid":"GO:0032742"}


id: PBO:0029598
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_sodium:hydrogen_antiporter_activity","termid":"PBO:0029598"}


id: PBO:0063390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDCD6-AHRR readthrough (NMD candidate)","termid":"PBO:0063390"}


id: PBO:0079512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin reductase 3","termid":"PBO:0079512"}


id: PR:G2TRQ6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tam11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRQ6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein tam11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17D1.17","synonyms":[{"name":"Spom972h-tam11","type":"exact"},{"name":"transcripts altered in meiosis protein 11 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRQ6"}


id: GO:0070598
data:
  {"annotated_genes":["SJAG_01028","SJAG_00610","SJAG_00424","SJAG_04666","SJAG_03057","SJAG_02278","SJAG_02916","SJAG_04236","SJAG_04184"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110548,100294,113982,105216,85179],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[88451,98958,90985,85471],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-glucosidic bonds, found in the walls of cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall polysaccharide biosynthetic process","termid":"GO:0070592"},{"relation_name":"is_a","term_name":"(1->3)-alpha-glucan biosynthetic process","termid":"GO:0070596"},{"relation_name":"is_a","term_name":"cell wall (1->3)-alpha-glucan metabolic process","termid":"GO:0070597"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_01028":null,"SJAG_02278":null,"SJAG_02916":null,"SJAG_03057":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0071554","GO:0005975"],"is_obsolete":false,"name":"cell wall (1->3)-alpha-glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cell wall 1,3-alpha-glucan anabolism","type":"exact"},{"name":"cell wall 1,3-alpha-glucan biosynthesis","type":"exact"},{"name":"cell wall 1,3-alpha-glucan biosynthetic process","type":"exact"},{"name":"cell wall 1,3-alpha-glucan formation","type":"exact"},{"name":"cell wall 1,3-alpha-glucan synthesis","type":"exact"},{"name":"cell wall alpha-1,3-glucan anabolism","type":"exact"},{"name":"cell wall alpha-1,3-glucan biosynthesis","type":"exact"},{"name":"cell wall alpha-1,3-glucan biosynthetic process","type":"exact"},{"name":"cell wall alpha-1,3-glucan formation","type":"exact"},{"name":"cell wall alpha-1,3-glucan synthesis","type":"exact"}],"termid":"GO:0070598","terms_by_termid":{"GO:0070600":null,"GO:0070610":null}}


id: GO:0005360
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + H(out)+ = glucose(in) + H(in)+, in response to a stimulus by insulin. Symporter activity enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy.","definition_xrefs":["GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-glucose:proton symporter activity","termid":"GO:0005356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"insulin-responsive D-glucose:proton symporter activity","synonyms":[{"name":"insulin-responsive glucose:proton symporter activity","type":"exact"},{"name":"insulin-responsive hydrogen:glucose symporter activity","type":"exact"},{"name":"insulin-responsive hydrogen:glucose transporter activity","type":"related"},{"name":"transepithelial hydrogen/glucose transporter activity","type":"related"}],"termid":"GO:0005360"}


id: PBO:0110377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IL9R pseudogene 3","termid":"PBO:0110377"}


id: PBO:0036220
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_rate_of_protein_movement_within_plasma_membrane_at_cell_tip","termid":"PBO:0036220"}


id: GO:1905103
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the lysosome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GO_REF:0000064","GOC:TermGenie","GOC:bf","GOC:PARL","PMID:26134396"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of lysosomal membrane (obsolete GO:1905103)","synonyms":[{"name":"integral component of lysosome membrane","type":"exact"},{"name":"integral to lysosomal membrane","type":"narrow"}],"termid":"GO:1905103"}


id: MOD:00507
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant, replaced by MOD:01653. Remap to MOD:01653.","definition_xrefs":["Unimod:139","DeltaMass:0"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00507 5-dimethylaminonaphthalene-1-sulfonyl (obsolete MOD:00507)","synonyms":[{"name":"5-dimethylaminonaphthalene-1-sulfonyl","type":"related"},{"name":"Dansyl","type":"related"},{"name":"Dansyl (Dns)","type":"exact"}],"termid":"MOD:00507"}


id: FYPO:0002276
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of protein degradation is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"decreased protein level","termid":"FYPO:0000835"},{"relation_name":"is_a","term_name":"abnormal protein degradation","termid":"FYPO:0002275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"increased protein degradation","synonyms":[{"name":"increased protein breakdown","type":"exact"},{"name":"increased protein catabolic process","type":"exact"},{"name":"increased protein catabolism","type":"exact"}],"termid":"FYPO:0002276"}


id: GO:0090648
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the provision of a combination of complex inanimate and social stimulations in the organism's housing environment.","definition_xrefs":["PMID:25934034","GOC:sl","PMID:23644055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to external stimulus","termid":"GO:0009605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to environmental enrichment","synonyms":[{"name":"response to the introduction of novel objects","type":"narrow"}],"termid":"GO:0090648"}


id: PBO:0111755
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPR repeat protein","termid":"PBO:0111755"}


id: GO:0051758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of homologous chromosomes from the center of the spindle towards the spindle poles, mediated by the shortening of microtubules attached to the chromosomes, during meiosis I anaphase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic chromosome movement towards spindle pole","termid":"GO:0016344"},{"relation_name":"part_of","term_name":"homologous chromosome segregation","termid":"GO:0045143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0140013","GO:0008150","GO:0007049","GO:0051179"],"is_obsolete":false,"name":"homologous chromosome movement towards spindle pole in meiosis I anaphase","synonyms":[{"name":"homologous chromosome movement towards spindle pole during meiosis I","type":"related"},{"name":"meiosis I, homologous chromosome movement towards spindle pole","type":"exact"}],"termid":"GO:0051758"}


id: GO:0002293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigenically naive alpha-beta T cell acquires the specialized features of an effector, regulatory, or memory T cell during an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell activation involved in immune response","termid":"GO:0002287"},{"relation_name":"is_a","term_name":"T cell differentiation involved in immune response","termid":"GO:0002292"},{"relation_name":"is_a","term_name":"alpha-beta T cell differentiation","termid":"GO:0046632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alpha-beta T cell differentiation involved in immune response","synonyms":[{"name":"alpha-beta T cell development involved in immune response","type":"related"},{"name":"alpha-beta T cell differentiation during immune response","type":"related"},{"name":"alpha-beta T lymphocyte differentiation during immune response","type":"related"},{"name":"alpha-beta T-cell differentiation during immune response","type":"related"},{"name":"alpha-beta T-lymphocyte differentiation during immune response","type":"related"}],"termid":"GO:0002293"}


id: PBO:0031734
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormally_arrested_meiosis","termid":"PBO:0031734"}


id: PBO:0065883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB33A, member RAS oncogene family","termid":"PBO:0065883"}


id: PBO:0000646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase family","termid":"PBO:0000646"}


id: PBO:0089093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinamide-nucleotide adenylyltransferase","termid":"PBO:0089093"}


id: GO:0002165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the instar larva or pupa over time, from its formation to the mature structure. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:jid","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organism development","termid":"GO:0007275"},{"relation_name":"is_a","term_name":"post-embryonic development","termid":"GO:0009791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"instar larval or pupal development","termid":"GO:0002165"}


id: PBO:0087390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Steryl ester hydrolase; one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes","termid":"PBO:0087390"}


id: MOD:00948
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-dephospho","termid":"MOD:00948"}


id: GO:0021870
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a neuroblast acquires specialized structural and/or functional features of a Cajal-Retzius cell, one of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene.","definition_xrefs":["GOC:dph","GOC:jid","GO_REF:0000021","GOC:dgh","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral cortex neuron differentiation","termid":"GO:0021895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Cajal-Retzius cell differentiation","termid":"GO:0021870"}


id: GO:0086030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An adrenergic receptor signaling pathway that contributes to a reduction in cardiac muscle contraction. Beta-adrenergic receptor-induced cardiac relaxation is achieved by a GPCR-activated adenylate cyclase generating cAMP; cAMP then activates the cAMP-dependent protein kinase A (PKA), which phosphorylates the sarcoplasmic reticulum (SR) membrane protein PLB. In its non-phosphorylated state, PLB acts as an inhibitor of the ATPase Ca(2+) pump of the cardiac SR (SERCA2a); inhibition of the pump is relieved upon phosphorylation. The pump removes Ca(2+) from the cytoplasm, thereby preventing cytosolic Ca(2+)-dependent activation of contractile proteins, leading to enhanced muscle relaxation.","definition_xrefs":["PMID:10571541","GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process","termid":"GO:0086023"},{"relation_name":"part_of","term_name":"relaxation of cardiac muscle","termid":"GO:0055119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"adenylate cyclase-activating adrenergic receptor signaling pathway involved in cardiac muscle relaxation","synonyms":[{"name":"Gs-coupled adrenergic receptor signaling pathway involved in cardiac muscle relaxation","type":"exact"},{"name":"adrenergic receptor signaling pathway involved in cardiac muscle relaxation","type":"exact"},{"name":"adrenergic receptor signaling pathway involved in cardiac muscle relaxation via activation of AC","type":"related"},{"name":"adrenergic receptor-induced cardiac relaxation","type":"related"}],"termid":"GO:0086030"}


id: PBO:0017461
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_pathogen","termid":"PBO:0017461"}


id: PBO:0071381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30 pseudogene 4","termid":"PBO:0071381"}


id: GO:0010734
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of protein glutathionylation. Protein glutathionylation is the protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein glutathionylation","termid":"GO:0010732"},{"relation_name":"is_a","term_name":"negative regulation of protein modification process","termid":"GO:0031400"},{"relation_name":"negatively_regulates","term_name":"protein glutathionylation","termid":"GO:0010731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein glutathionylation","synonyms":[{"name":"negative regulation of protein amino acid glutathionylation","type":"exact"}],"termid":"GO:0010734"}


id: PBO:0045612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 23 (pseudogene)","termid":"PBO:0045612"}


id: GO:1990207
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transmembrane protein complex capable of transporting positively charged hydrophobic drugs across the plasma membrane thereby involved in conferring resistance to a wide range of toxic compounds (e.g. methyl viologen, ethidium bromide and acriflavine). It is commonly found in bacteria. In E. coli it forms a homodimer.","definition_xrefs":["GOC:bhm","PMID:18024586"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"is_a","term_name":"transmembrane transporter complex","termid":"GO:1902495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"EmrE multidrug transporter complex","synonyms":[{"name":"EmrE complex","type":"narrow"}],"termid":"GO:1990207"}


id: GO:0086095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A G protein-coupled acetylcholine receptor signaling pathway that contributes to a decrease in frequency or rate of heart contraction through activation of the IKACh potassium channel. Binding of acetylcholine to a G protein-coupled acetylcholine receptor (muscarinic receptor) on the surface of the signal-receiving cell results in liberation of the G-beta/gamma complex from the alpha subunit. The G-beta/gamma complex binds directly to the inward-rectifying potassium channel IKACh. Once the ion channel is activated, potassium ions (K+) flow out of the cell and cause it to hyperpolarize. In its hyperpolarized state, action potentials cannot be fired as quickly as possible, which slows the heart rate.","definition_xrefs":["Wikipedia:G_protein-gated_ion_channel","GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of IKACh channel activity by G protein-coupled acetylcholine receptor signaling pathway involved in negative regulation of heart rate (obsolete GO:0086095)","synonyms":[{"name":"Gbeta/gamma-coupled muscarinic receptor signaling pathway involved in negative regulation of heart rate","type":"related"},{"name":"cardiac muscarinic receptor signaling via Gbeta/gamma","type":"related"},{"name":"muscarinic receptor signaling pathway involved in activation of IKACH","type":"exact"},{"name":"muscarinic receptor signaling pathway involved in ion channel activation","type":"broad"},{"name":"positive regulation of IKACh channel activity by G-protein coupled acetylcholine receptor signaling","type":"exact"}],"termid":"GO:0086095"}


id: PBO:0087262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine protein phosphatase Z, isoform of Ppz1p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance","termid":"PBO:0087262"}


id: GO:0018519
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-1,2-dihydro-3-ethylcatechol + NAD+ = 3-ethylcatechol + H+ + NADH.","definition_xrefs":["RHEA:18101","EC:1.3.1.66"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"cis-dihydroethylcatechol dehydrogenase activity","secondary_identifiers":["UM-BBD_reactionID:r0309","KEGG_REACTION:R05313","MetaCyc:1.3.1.66-RXN"],"synonyms":[{"name":"cis-1,2-dihydro-3-ethylcatechol:NAD+ oxidoreductase activity","type":"related"},{"name":"cis-ethylbenzene glycol dehydrogenase activity","type":"exact"}],"termid":"GO:0018519"}


id: GO:0019526
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pentitols, any alditol with a chain of five carbon atoms in the molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alditol biosynthetic process","termid":"GO:0019401"},{"relation_name":"is_a","term_name":"pentitol metabolic process","termid":"GO:0019519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pentitol biosynthetic process","synonyms":[{"name":"pentitol anabolism","type":"exact"},{"name":"pentitol biosynthesis","type":"exact"},{"name":"pentitol formation","type":"exact"},{"name":"pentitol synthesis","type":"exact"}],"termid":"GO:0019526"}


id: GO:0051598
data:
  {"annotated_genes":["SJAG_00364","SJAG_04287","SJAG_03529","SJAG_03438","SJAG_01680"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76789,85092,102735,110426,112239],"is_not":false,"summary":null,"term":"GO:0051598"}]},"cv_name":"biological_process","definition":"A signaling process that contributes to a meiotic recombination checkpoint, that acts during late prophase I (pachytene) and prevents segregation of homologous chromosomes until recombination is completed, ensuring proper distribution of the genetic material to the gametes.","definition_xrefs":["PMID:14718568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle checkpoint signaling","termid":"GO:0033313"},{"relation_name":"is_a","term_name":"negative regulation of meiotic nuclear division","termid":"GO:0045835"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_01680":null,"SJAG_03438":null,"SJAG_03529":null,"SJAG_04287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0140013"},{"rel_name":"negatively_regulates","termid":"GO:0140013"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0140013","GO:0023052","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"meiotic recombination checkpoint signaling","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0072462"],"synonyms":[{"name":"meiotic recombination checkpoint","type":"exact"},{"name":"pachytene checkpoint","type":"exact"},{"name":"signal transduction involved in meiotic recombination checkpoint","type":"exact"}],"termid":"GO:0051598","terms_by_termid":{"GO:0051598":null}}


id: GO:0102721
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O2 + 2 an ubiquinol = 2 H2O + 2 an ubiquinone.","definition_xrefs":["GOC:pz","RHEA:30255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor","termid":"GO:0016682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"ubiquinol:oxygen oxidoreductase activity","secondary_identifiers":["MetaCyc:RXN-6883","EC:1.10.3.11"],"termid":"GO:0102721"}


id: PBO:0067907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 209","termid":"PBO:0067907"}


id: PBO:0049592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 clustered histone 10","termid":"PBO:0049592"}


id: FYPO:0001431
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of the antibiotic Dio-9 than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0002682","FYPO:0000003"],"is_obsolete":false,"name":"resistance to Dio-9","synonyms":[{"name":"resistance to DIO 9","type":"exact"},{"name":"resistance to Dio-9 during mitotic cell cycle","type":"related"},{"name":"resistance to Dio-9 during vegetative growth","type":"exact"},{"name":"resistant to Dio-9","type":"exact"}],"termid":"FYPO:0001431"}


id: GO:2000547
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dendritic cell dendrite assembly.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120032"},{"relation_name":"regulates","term_name":"dendritic cell dendrite assembly","termid":"GO:0097026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic cell dendrite assembly","synonyms":[{"name":"regulation of dendritic extension","type":"related"}],"termid":"GO:2000547"}


id: PBO:0080891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YTH domain family member 1 pseudogene 1","termid":"PBO:0080891"}


id: PBO:0087938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translational repressor;  involved in polar growth, wall integrity, autodiploidization; regulated by Cbk1p phosphorylation to affect bud-specific translational control and localization of specific mRNAs; binds 5'UTRs of mRNAs encoding cell wall proteins; recognizes CNYTCNYT motif in RNA; interacts with TOR pathway components; nucleocytoplasmic shuttling appears to be critical to Ssd1p function; W303 lacks a functional SSD1 gene product; pseudonuclease descended from Dis3L2-family nucleases","termid":"PBO:0087938"}


id: PBO:0003237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UV-induced protein Uvi15","termid":"PBO:0003237"}


id: GO:1901330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of odontoblast differentiation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inhibition of neuroepithelial cell differentiation","termid":"GO:0002085"},{"relation_name":"is_a","term_name":"regulation of odontoblast differentiation","termid":"GO:1901329"},{"relation_name":"negatively_regulates","term_name":"odontoblast differentiation","termid":"GO:0071895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of odontoblast differentiation","synonyms":[{"name":"down regulation of odontoblast differentiation","type":"exact"},{"name":"down-regulation of odontoblast differentiation","type":"exact"},{"name":"downregulation of odontoblast differentiation","type":"exact"},{"name":"inhibition of odontoblast differentiation","type":"narrow"}],"termid":"GO:1901330"}


id: PATO:0002237
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or downward.","direct_ancestors":[{"relation_name":"is_a","term_name":"curved","termid":"PATO:0000406"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retrorse","termid":"PATO:0002237"}


id: PBO:0087511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of heterodimeric peroxisomal ABC transport complex, with Pxa2p; required for import of long-chain fatty acids into peroxisomes; similar to human adrenoleukodystrophy transporters ABCD1and ABCD2, and ALD-related proteins; mutations in ABCD1 cause X-linked adrenoleukodystrophy (X-ALD), a peroxisomal disorder; human ABCD1 and ABCD2 can each partially complement yeast pxa1 pxa2 double null mutant","termid":"PBO:0087511"}


id: PBO:0027325
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_cell_cycle_regulation_during_cellular_response_to_UV","termid":"PBO:0027325"}


id: PBO:0045640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 52 (pseudogene)","termid":"PBO:0045640"}


id: GO:0005521
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to lamin; any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"lamin binding","synonyms":[{"name":"lamin/chromatin binding","type":"broad"}],"termid":"GO:0005521"}


id: SO:0001134
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Left handed type I:A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles:- Residue(i+1): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees. Residue(i+2): -140 degrees > phi > -20 degrees, -90 degrees > psi > +40 degrees.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta_turn","termid":"SO:0001133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"beta_turn_left_handed_type_one","secondary_identifiers":["BS:00215"],"synonyms":[{"name":"beta turn left handed type one","type":"exact"},{"name":"beta_turn_il","type":"exact"},{"name":"type I' beta turn","type":"exact"},{"name":"type I' turn","type":"exact"}],"termid":"SO:0001134"}


id: PBO:0069152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 403, pseudogene","termid":"PBO:0069152"}


id: GO:1904493
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to tetrahydrofolyl-poly(glutamate) polymer.","definition_xrefs":["GOC:hal","GOC:TermGenie","PMID:24863754","GO_REF:0000067","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule binding","termid":"GO:0036094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"tetrahydrofolyl-poly(glutamate) polymer binding","termid":"GO:1904493"}


id: GO:2000803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a signal is passed on to downstream components located at the endosome. Endosomes can provide important intracellular signaling platforms and provide spatial and temporal control over signal transduction.","definition_xrefs":["PMID:15084302","PMID:17662591","GOC:bf","GOC:signaling"],"gene_count":0,"genotype_count":0,"name":"obsolete endosomal signal transduction (obsolete GO:2000803)","synonyms":[{"name":"endosome-based signaling","type":"exact"},{"name":"signaling cascade in endosome","type":"related"},{"name":"signaling from endosome","type":"exact"},{"name":"signaling pathway in endosome","type":"related"},{"name":"signalling cascade in endosome","type":"related"},{"name":"signalling pathway in endosome","type":"related"}],"termid":"GO:2000803"}


id: GO:0008998
data:
  {"annotated_genes":["SJAG_02948"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71077],"is_not":false,"summary":null,"term":"GO:0008998"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: [thioredoxin]-disulfide + a 2'-deoxyribonucleoside 5'-triphosphate + H2O = [thioredoxin]-dithiol + a ribonucleoside 5'-triphosphate.","definition_xrefs":["RHEA:12701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor","termid":"GO:0016728"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02948":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ribonucleoside-triphosphate reductase (thioredoxin) activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:1.17.4.2","MetaCyc:1.17.4.2-RXN"],"synonyms":[{"name":"2'-deoxyribonucleoside-triphosphate:oxidized-thioredoxin 2'-oxidoreductase activity","type":"related"},{"name":"2'-deoxyribonucleoside-triphosphate:thioredoxin-disulfide 2'-oxidoreductase activity","type":"related"},{"name":"ribonucleoside-triphosphate reductase activity","type":"exact"},{"name":"ribonucleotide reductase activity","type":"broad"}],"termid":"GO:0008998","terms_by_termid":{"GO:0008998":null}}


id: PBO:0045618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 29 (pseudogene)","termid":"PBO:0045618"}


id: GO:0019427
data:
  {"annotated_genes":["SJAG_02741"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112275],"is_not":false,"summary":null,"term":"GO:0019427"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetyl-CoA from acetate, either directly or via acetylphosphate.","definition_xrefs":["MetaCyc:ACETATEUTIL-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetate metabolic process","termid":"GO:0006083"},{"relation_name":"is_a","term_name":"acetyl-CoA biosynthetic process","termid":"GO:0006085"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02741":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006790","GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"acetyl-CoA biosynthetic process from acetate","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"acetate utilization","type":"related"},{"name":"acetyl-CoA anabolism from acetate","type":"exact"},{"name":"acetyl-CoA formation from acetate","type":"exact"},{"name":"acetyl-CoA synthesis from acetate","type":"exact"}],"termid":"GO:0019427","terms_by_termid":{"GO:0019427":null}}


id: PBO:0075761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/arginine repetitive matrix 1 pseudogene 3","termid":"PBO:0075761"}


id: GO:1905297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of neural crest cell fate specification.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:15073157","GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell fate specification","termid":"GO:0042660"},{"relation_name":"is_a","term_name":"positive regulation of neural crest formation","termid":"GO:0090300"},{"relation_name":"is_a","term_name":"positive regulation of neural crest cell differentiation","termid":"GO:1905294"},{"relation_name":"is_a","term_name":"regulation of neural crest cell fate specification","termid":"GO:1905295"},{"relation_name":"positively_regulates","term_name":"neural crest cell fate specification","termid":"GO:0014036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neural crest cell fate specification","synonyms":[{"name":"activation of neural crest cell fate specification","type":"narrow"},{"name":"up regulation of neural crest cell fate specification","type":"exact"},{"name":"up-regulation of neural crest cell fate specification","type":"exact"},{"name":"upregulation of neural crest cell fate specification","type":"exact"}],"termid":"GO:1905297"}


id: PBO:0003512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, human WDR6 family, implicated in cell cycle","termid":"PBO:0003512"}


id: GO:0036084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of GDP-fucose into the endoplasmic reticulum lumen. GDP-fucose is a substance composed of fucose in glycosidic linkage with guanosine diphosphate.","definition_xrefs":["GOC:sart","PMID:3458237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GDP-fucose transmembrane transport","termid":"GO:0015783"},{"relation_name":"is_a","term_name":"cytosol to endoplasmic reticulum transport","termid":"GO:0046967"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"GDP-fucose import into endoplasmic reticulum lumen","synonyms":[{"name":"GDP-fucose import into endoplasmic reticulum","type":"exact"},{"name":"GDP-fucose transport across endoplasmic reticulum membrane","type":"exact"},{"name":"GDP-fucose transport into endoplasmic reticulum lumen","type":"exact"}],"termid":"GO:0036084"}


id: GO:0008229
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binds to microorganisms or other particulate material (for example, foreign erythrocytes) to increase the susceptibility of the latter to phagocytosis.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete opsonin activity (obsolete GO:0008229)","synonyms":[{"name":"opsonin activity","type":"exact"}],"termid":"GO:0008229"}


id: GO:0019625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide, into cyanuric acid.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrazine catabolic process","termid":"GO:0019381"},{"relation_name":"is_a","term_name":"cyanuric acid metabolic process","termid":"GO:0042199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"atrazine catabolic process to cyanuric acid","secondary_identifiers":["MetaCyc:P141-PWY"],"synonyms":[{"name":"atrazine breakdown to cyanuric acid","type":"exact"},{"name":"atrazine degradation to cyanuric acid","type":"exact"}],"termid":"GO:0019625"}


id: GO:0070198
data:
  {"annotated_genes":["SJAG_00429","SJAG_00640","SJAG_01378","SJAG_00364"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95809,96948,102741,107888],"is_not":false,"summary":null,"term":"GO:0070198"}]},"cv_name":"biological_process","definition":"Any process in which a protein is transported to, or maintained at, the telomeric region of a chromosome.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to chromosome","termid":"GO:0034502"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_00429":null,"SJAG_00640":null,"SJAG_01378":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to chromosome, telomeric region","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation to chromosome, telomeric region","type":"exact"},{"name":"protein localization to telomere","type":"exact"}],"termid":"GO:0070198","terms_by_termid":{"GO:0070198":null}}


id: GO:0051553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of flavones, a class of pigmented plant compounds based on 2-phenyl-4H-1-benzopyran-4-one (2-phenylchromone).","definition_xrefs":["GOC:ai","PMID:18567791"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavonoid biosynthetic process","termid":"GO:0009813"},{"relation_name":"is_a","term_name":"pigment biosynthetic process","termid":"GO:0046148"},{"relation_name":"is_a","term_name":"flavone metabolic process","termid":"GO:0051552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"flavone biosynthetic process","synonyms":[{"name":"2-phenyl-4H-1-benzopyran-4-one biosynthesis","type":"narrow"},{"name":"2-phenyl-4H-1-benzopyran-4-one biosynthetic process","type":"narrow"},{"name":"2-phenylchromone biosynthesis","type":"narrow"},{"name":"2-phenylchromone biosynthetic process","type":"narrow"}],"termid":"GO:0051553"}


id: PBO:0058198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4491","termid":"PBO:0058198"}


id: GO:0036490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Modulation of the frequency, rate or extent of translation as a result of endoplasmic reticulum stress.","definition_xrefs":["GOC:PARL","PMID:16835242","PMID:14676213","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translation in response to stress","termid":"GO:0043555"},{"relation_name":"part_of","term_name":"response to endoplasmic reticulum stress","termid":"GO:0034976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of translation in response to endoplasmic reticulum stress","synonyms":[{"name":"regulation of translation in response to ER stress","type":"exact"}],"termid":"GO:0036490"}


id: GO:1903740
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of phosphatidate phosphatase activity.","definition_xrefs":["GO_REF:0000059","PMID:25359770","GOC:rn","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of phosphatidate phosphatase activity (obsolete GO:1903740)","synonyms":[{"name":"activation of phosphatidate phosphohydrolase activity","type":"narrow"},{"name":"activation of 3-sn-phosphatidate phosphohydrolase activity","type":"narrow"},{"name":"activation of acid phosphatidyl phosphatase activity","type":"narrow"},{"name":"activation of phosphatic acid phosphatase activity","type":"narrow"},{"name":"activation of phosphatic acid phosphohydrolase activity","type":"narrow"},{"name":"activation of phosphatidate phosphatase activity","type":"narrow"},{"name":"activation of phosphatidic acid phosphatase activity","type":"narrow"},{"name":"positive regulation of 3-sn-phosphatidate phosphohydrolase activity","type":"exact"},{"name":"positive regulation of acid phosphatidyl phosphatase activity","type":"exact"},{"name":"positive regulation of phosphatic acid phosphatase activity","type":"exact"},{"name":"positive regulation of phosphatic acid phosphohydrolase activity","type":"exact"},{"name":"positive regulation of phosphatidate phosphohydrolase activity","type":"exact"},{"name":"positive regulation of phosphatidic acid phosphatase activity","type":"exact"},{"name":"up regulation of 3-sn-phosphatidate phosphohydrolase activity","type":"exact"},{"name":"up regulation of acid phosphatidyl phosphatase activity","type":"exact"},{"name":"up regulation of phosphatic acid phosphatase activity","type":"exact"},{"name":"up regulation of phosphatic acid phosphohydrolase activity","type":"exact"},{"name":"up regulation of phosphatidate phosphatase activity","type":"exact"},{"name":"up regulation of phosphatidate phosphohydrolase activity","type":"exact"},{"name":"up regulation of phosphatidic acid phosphatase activity","type":"exact"},{"name":"up-regulation of 3-sn-phosphatidate phosphohydrolase activity","type":"exact"},{"name":"up-regulation of acid phosphatidyl phosphatase activity","type":"exact"},{"name":"up-regulation of phosphatic acid phosphatase activity","type":"exact"},{"name":"up-regulation of phosphatic acid phosphohydrolase activity","type":"exact"},{"name":"up-regulation of phosphatidate phosphatase activity","type":"exact"},{"name":"up-regulation of phosphatidate phosphohydrolase activity","type":"exact"},{"name":"up-regulation of phosphatidic acid phosphatase activity","type":"exact"},{"name":"upregulation of 3-sn-phosphatidate phosphohydrolase activity","type":"exact"},{"name":"upregulation of acid phosphatidyl phosphatase activity","type":"exact"},{"name":"upregulation of phosphatic acid phosphatase activity","type":"exact"},{"name":"upregulation of phosphatic acid phosphohydrolase activity","type":"exact"},{"name":"upregulation of phosphatidate phosphatase activity","type":"exact"},{"name":"upregulation of phosphatidate phosphohydrolase activity","type":"exact"},{"name":"upregulation of phosphatidic acid phosphatase activity","type":"exact"}],"termid":"GO:1903740"}


id: GO:0022416
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a chaeta over time, from its formation to the mature structure. A chaeta is a sensory multicellular cuticular outgrowth of a specifically differentiated cell.","definition_xrefs":["FBbt:00005177","GOC:bf","GOC:cjm","GOC:isa_complete","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory organ development","termid":"GO:0007423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chaeta development","synonyms":[{"name":"bristle development","type":"narrow"}],"termid":"GO:0022416"}


id: PBO:0089061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces japonicus specific protein, possibly be part of SJAG_01450","termid":"PBO:0089061"}


id: PBO:0072177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S16 pseudogene 4","termid":"PBO:0072177"}


id: GO:0016162
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose and cellotetraose, releasing cellobiose from the non-reducing ends of the chains.","definition_xrefs":["EC:3.2.1.91"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"cellulose 1,4-beta-cellobiosidase activity","secondary_identifiers":["MetaCyc:3.2.1.91-RXN"],"synonyms":[{"name":"1,4-beta-D-glucan cellobiohydrolase activity","type":"related"},{"name":"1,4-beta-cellobiohydrolase activity","type":"related"},{"name":"1,4-beta-glucan cellobiosidase activity","type":"related"},{"name":"C1 cellulase activity","type":"related"},{"name":"CBH 1","type":"related"},{"name":"avicelase activity","type":"broad"},{"name":"beta-1,4-glucan cellobiohydrolase activity","type":"related"},{"name":"beta-1,4-glucan cellobiosylhydrolase activity","type":"related"},{"name":"cellobiohydrolase I","type":"related"},{"name":"cellobiohydrolase activity","type":"related"},{"name":"cellobiosidase activity","type":"related"},{"name":"exo-1,4-beta-D-glucanase activity","type":"related"},{"name":"exo-beta-1,4-glucan cellobiohydrolase activity","type":"related"},{"name":"exo-cellobiohydrolase activity","type":"related"},{"name":"exocellobiohydrolase activity","type":"related"},{"name":"exoglucanase activity","type":"related"}],"termid":"GO:0016162"}


id: GO:0032415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the activity of a sodium:hydrogen antiporter, which catalyzes the reaction: Na+(out) + H+(in) = Na+(in) + H+(out).","definition_xrefs":["GOC:mtg_transport","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of proton transport","termid":"GO:0010155"},{"relation_name":"is_a","term_name":"regulation of sodium ion transmembrane transporter activity","termid":"GO:2000649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of sodium:proton antiporter activity","synonyms":[{"name":"regulation of sodium:hydrogen antiporter activity","type":"exact"}],"termid":"GO:0032415"}


id: PBO:0000241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma tubulin complex subunit Mod21","termid":"PBO:0000241"}


id: GO:1905056
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A calcium-transporting P-type ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration.","definition_xrefs":["GO_REF:0000061","GOC:TermGenie","PMID:22972962"],"direct_ancestors":[{"relation_name":"is_a","term_name":"P-type calcium transporter activity","termid":"GO:0005388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration","synonyms":[{"name":"ATP phosphohydrolase (Ca2+-transporting) involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"ATPase-coupled calcium ion transmembrane transporter activity involved in regulation of presynaptic cytosolic calcium levels","type":"exact"},{"name":"Ca(2+)-transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"Ca2+-pumping ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"Ca2+-transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"calcium ABC transporter involved in regulation of presynaptic cytosolic calcium ion concentration","type":"narrow"},{"name":"calcium efflux ATPase involved in regulation of presynaptic cytosolic calcium ion concentration","type":"narrow"},{"name":"calcium transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"calcium-translocating P-type ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"narrow"},{"name":"calcium-transporting ATPase activity involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"plasma membrane Ca-ATPase involved in regulation of presynaptic cytosolic calcium ion concentration","type":"narrow"}],"termid":"GO:1905056"}


id: GO:0018721
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: trans-9R,10R-dihydrodiolphenanthrene + 2 X-SO3(-) = 2 HX + phenanthrene-9,10-dihydrodiolsulfate conjugate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete trans-9R,10R-dihydrodiolphenanthrene sulfotransferase activity (obsolete GO:0018721)","synonyms":[{"name":"trans-9R,10R-dihydrodiolphenanthrene sulphotransferase activity","type":"exact"}],"termid":"GO:0018721"}


id: PBO:0081521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 430","termid":"PBO:0081521"}


id: PBO:0051682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inhibin subunit beta E","termid":"PBO:0051682"}


id: GO:0051073
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosylcobinamide-GDP + alpha-ribazole = GMP + adenosylcobalamin.","definition_xrefs":["MetaCyc:COBALAMINSYN-RXN","EC:2.7.8.26"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016780"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016780"],"is_obsolete":false,"name":"adenosylcobinamide-GDP ribazoletransferase activity","secondary_identifiers":["RHEA:16049"],"synonyms":[{"name":"CobS","type":"related"},{"name":"adenosylcobinamide-GDP:alpha-ribazole ribazoletransferase activity","type":"related"},{"name":"cobalamin (5'-phosphate) synthase activity","type":"related"},{"name":"cobalamin synthase activity","type":"exact"},{"name":"cobalamin-5'-phosphate synthase activity","type":"related"}],"termid":"GO:0051073"}


id: PATO:0001010
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001010 relative intensity (obsolete PATO:0001010)","termid":"PATO:0001010"}


id: PBO:0086177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for the nuclear import and biogenesis of RNA pol II; conflicting evidence on whether null mutant is viable with elongated buds, or inviable; interacts with Rpb2, Rpb3, Nup116p, Nup100p and components of the R2TP complex (Rvb1p, Rvb2p, Pih1p); similar to human TMCO7 gene","termid":"PBO:0086177"}


id: GO:0019096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which mitochondrial large ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pole plasm mitochondrial rRNA localization","termid":"GO:0019095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0044085"],"is_obsolete":false,"name":"pole plasm mitochondrial lrRNA localization","secondary_identifiers":["GO:0048118"],"synonyms":[{"name":"establishment and maintenance of mitochondrial lrRNA localization in pole plasm","type":"exact"},{"name":"oocyte pole plasm mitochondrial lrRNA localization","type":"exact"},{"name":"pole plasm mitochondrial lrRNA localisation","type":"exact"}],"termid":"GO:0019096"}


id: PBO:0066185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 8A","termid":"PBO:0066185"}


id: GO:0001748
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the optic placode over time, from its formation to the mature structure. During embryonic stage 12 the placode starts to invaginate, forming a pouch. Cells that will form Bolwig's organ segregate from the ventral lip of this pouch, remaining in the head epidermis. The remainder of the invagination loses contact with the outer surface and becomes the optic lobe. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["PMID:8402833","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"insect visual primordium development","secondary_identifiers":["GO:0048049"],"synonyms":[{"name":"optic lobe and Bolwig's organ precursor development","type":"exact"},{"name":"optic lobe placode development","type":"exact"},{"name":"optic placode development","type":"broad"}],"termid":"GO:0001748"}


id: PBO:0075457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 7","termid":"PBO:0075457"}


id: SO:0002151
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A uORF beginning with a codon other than AUG.","definition_xrefs":["PMID:27313038","PMID:26684391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uORF","termid":"SO:0002027"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_AUG_initiated_uORF","synonyms":[{"name":"non AUG initiated uORF","type":"exact"}],"termid":"SO:0002151"}


id: GO:0043370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of CD4-positive, alpha-beta T cell differentiation.","definition_xrefs":["ISBN:0781735149","GOC:pr","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of alpha-beta T cell differentiation","termid":"GO:0046637"},{"relation_name":"is_a","term_name":"regulation of CD4-positive, alpha-beta T cell activation","termid":"GO:2000514"},{"relation_name":"regulates","term_name":"CD4-positive, alpha-beta T cell differentiation","termid":"GO:0043367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of CD4-positive, alpha-beta T cell differentiation","synonyms":[{"name":"regulation of CD4-positive T lymphocyte differentiation","type":"exact"},{"name":"regulation of CD4-positive T-cell differentiation","type":"exact"},{"name":"regulation of CD4-positive T-lymphocyte differentiation","type":"exact"},{"name":"regulation of CD4-positive, alpha beta T cell development","type":"related"},{"name":"regulation of CD4-positive, alpha beta T cell differentiation","type":"exact"},{"name":"regulation of CD4-positive, alpha beta T lymphocyte differentiation","type":"exact"},{"name":"regulation of CD4-positive, alpha beta T-cell differentiation","type":"exact"},{"name":"regulation of CD4-positive, alpha beta T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0043370"}


id: PBO:0089031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyruvate dehydrogenase (lipoamide) kinase Pkp1","termid":"PBO:0089031"}


id: PBO:0042156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 17","termid":"PBO:0042156"}


id: PBO:0083604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame unlikely to encode a functional protein; overlaps 3' end of essential PRP19 gene encoding an RNA splicing factor","termid":"PBO:0083604"}


id: PATO:0002426
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat.","definition_xrefs":["wordnetweb:wordnetweb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scaphoid","termid":"PATO:0002426"}


id: GO:0034116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of heterotypic cell-cell adhesion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-cell adhesion","termid":"GO:0022409"},{"relation_name":"is_a","term_name":"regulation of heterotypic cell-cell adhesion","termid":"GO:0034114"},{"relation_name":"positively_regulates","term_name":"heterotypic cell-cell adhesion","termid":"GO:0034113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of heterotypic cell-cell adhesion","termid":"GO:0034116"}


id: PBO:0000816
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.8.1","termid":"PBO:0000816"}


id: CHEBI:26271
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline","termid":"CHEBI:26271"}


id: GO:0023012
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which binding of an MHC complex to T cell receptor causes activation of T cell receptor signaling.","definition_xrefs":["GOC:mtg_signal"],"gene_count":0,"genotype_count":0,"name":"obsolete initiation of T cell receptor signaling by binding of a MHC complex to T cell receptor (obsolete GO:0023012)","synonyms":[{"name":"initiation of T cell receptor signaling by binding of a MHC complex to T cell receptor","type":"exact"},{"name":"initiation of T cell receptor signalling by binding of a MHC complex to T cell receptor","type":"exact"}],"termid":"GO:0023012"}


id: PBO:0079617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 L2 (pseudogene)","termid":"PBO:0079617"}


id: GO:1902379
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any chemoattractant activity that is involved in axon guidance.","definition_xrefs":["GOC:rl","GOC:TermGenie","GOC:BHF","PMID:21658587"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemoattractant activity","termid":"GO:0042056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0098772","GO:0005515","GO:0140677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"chemoattractant activity involved in axon guidance","synonyms":[{"name":"chemoattractant activity involved in axon chemotaxis","type":"related"},{"name":"chemoattractant activity involved in axon growth cone guidance","type":"narrow"},{"name":"chemoattractant activity involved in axon pathfinding","type":"exact"}],"termid":"GO:1902379"}


id: PBO:0090469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type ATPase V1 subunit F","termid":"PBO:0090469"}


id: GO:0008759
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the removal of an acetyl group from the 2-N position of glucosamine in the lipid A precursor UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine.","definition_xrefs":["PMID:10026271"],"gene_count":0,"genotype_count":0,"name":"obsolete UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity (obsolete GO:0008759)","termid":"GO:0008759"}


id: PBO:0035824
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H4_acetylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0035824"}


id: GO:1901799
data:
  {"annotated_genes":["SJAG_00475","SJAG_02244","SJAG_03048","SJAG_00052"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98463],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905785"},{"annotations":[95955],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904293"},{"annotations":[103079,86432],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032435"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of proteasomal protein catabolic process.","definition_xrefs":["GOC:BHF","GOC:rl","GOC:TermGenie","PMID:21669198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein catabolic process","termid":"GO:0042177"},{"relation_name":"is_a","term_name":"regulation of proteasomal protein catabolic process","termid":"GO:0061136"},{"relation_name":"is_a","term_name":"negative regulation of proteolysis involved in protein catabolic process","termid":"GO:1903051"},{"relation_name":"negatively_regulates","term_name":"proteasomal protein catabolic process","termid":"GO:0010498"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00052":null,"SJAG_00475":null,"SJAG_02244":null,"SJAG_03048":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"negative regulation of proteasomal protein catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of proteasomal protein catabolic process","type":"exact"},{"name":"down regulation of proteasome-mediated protein catabolic process","type":"exact"},{"name":"down regulation of proteasome-mediated protein catabolism","type":"exact"},{"name":"down-regulation of proteasomal protein catabolic process","type":"exact"},{"name":"down-regulation of proteasome-mediated protein catabolic process","type":"exact"},{"name":"down-regulation of proteasome-mediated protein catabolism","type":"exact"},{"name":"downregulation of proteasomal protein catabolic process","type":"exact"},{"name":"downregulation of proteasome-mediated protein catabolic process","type":"exact"},{"name":"downregulation of proteasome-mediated protein catabolism","type":"exact"},{"name":"inhibition of proteasomal protein catabolic process","type":"narrow"},{"name":"inhibition of proteasome-mediated protein catabolic process","type":"exact"},{"name":"inhibition of proteasome-mediated protein catabolism","type":"exact"},{"name":"negative regulation of proteasome-mediated protein catabolic process","type":"exact"},{"name":"negative regulation of proteasome-mediated protein catabolism","type":"exact"}],"termid":"GO:1901799","terms_by_termid":{"GO:0032435":null,"GO:1904293":null,"GO:1905785":null}}


id: GO:0042451
data:
  {"annotated_genes":["SJAG_01070","SJAG_03096","SJAG_01859","SJAG_00044","SJAG_00134","SJAG_06634","SJAG_03881"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046086"},{"annotations":[113026],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"},{"annotations":[104640],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006190"},{"annotations":[89576,112015,89799,85809],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006166"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of any purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside biosynthetic process","termid":"GO:0009163"},{"relation_name":"is_a","term_name":"purine nucleoside metabolic process","termid":"GO:0042278"},{"relation_name":"is_a","term_name":"purine-containing compound biosynthetic process","termid":"GO:0072522"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00134":null,"SJAG_01070":null,"SJAG_01859":null,"SJAG_03096":null,"SJAG_03881":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"purine nucleoside biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"purine nucleoside anabolism","type":"exact"},{"name":"purine nucleoside biosynthesis","type":"exact"},{"name":"purine nucleoside formation","type":"exact"},{"name":"purine nucleoside synthesis","type":"exact"}],"termid":"GO:0042451","terms_by_termid":{"GO:0006166":null,"GO:0006169":null,"GO:0006190":null,"GO:0046086":null}}


id: PBO:0039248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALDH1L1 antisense RNA 2","termid":"PBO:0039248"}


id: RO:0002232
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y","direct_ancestors":[{"relation_name":"is_a","term_name":"has_part_that_occurs_in","termid":"RO:0002479"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_end_location","termid":"RO:0002232"}


id: GO:0047910
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-galactose + NADP+ = D-galactonolactone + NADPH.","definition_xrefs":["EC:1.1.1.120","MetaCyc:GALACTOSE-1-DEHYDROGENASE-NADP+-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"galactose 1-dehydrogenase (NADP+) activity","secondary_identifiers":["RHEA:18625"],"synonyms":[{"name":"D-galactose dehydrogenase (NADP+)","type":"related"},{"name":"D-galactose:NADP+ 1-oxidoreductase activity","type":"related"}],"termid":"GO:0047910"}


id: GO:1990914
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the plasma membrane consisting of the gene products that penetrate only the periplasmic side of the membrane.","definition_xrefs":["GOC:bhm","PMID:15919996"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of periplasmic side of plasma membrane (obsolete GO:1990914)","termid":"GO:1990914"}


id: PBO:0049052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPR50 antisense RNA 1","termid":"PBO:0049052"}


id: GO:0021920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of neuronal precursors to association neurons in the dorsal spinal cord.","definition_xrefs":["PMID:12593981","GOC:dph","GO_REF:0000021","GOC:cls","GOC:dgh","GOC:jid"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification (obsolete GO:0021920)","termid":"GO:0021920"}


id: PATO:0005020
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"irregularly shaped","termid":"PATO:0005020"}


id: FYPO:0005574
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which nuclear transport is abnormal during one or both meiotic nuclear divisions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport phenotype during vegetative growth","termid":"FYPO:0001336"},{"relation_name":"is_a","term_name":"abnormal nuclear transport","termid":"FYPO:0005573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal nuclear transport during meiosis","synonyms":[{"name":"abnormal nuclear transport during meiotic nuclear division","type":"related"}],"termid":"FYPO:0005574"}


id: GO:0045130
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + keratan = adenosine 3',5'-bisphosphate + keratan 6'-sulfate.","definition_xrefs":["EC:2.8.2.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016782","GO:0003824"],"is_obsolete":false,"name":"keratan sulfotransferase activity","secondary_identifiers":["MetaCyc:KERATAN-SULFOTRANSFERASE-RXN","Reactome:R-HSA-2046175"],"synonyms":[{"name":"3'-phosphoadenylyl keratan sulfotransferase activity","type":"related"},{"name":"3'-phosphoadenylyl-sulfate:keratan 6'-sulfotransferase activity","type":"related"},{"name":"3'-phosphoadenylylsulfate:keratan sulfotransferase activity","type":"related"},{"name":"keratan sulfate Gal-6-sulfotransferase activity","type":"exact"},{"name":"keratan sulfate sulfotransferase activity","type":"related"},{"name":"keratan sulphotransferase activity","type":"exact"}],"termid":"GO:0045130"}


id: GO:0102523
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-2-chloropropanoate + NADP = 2-chloroacrylate + NADPH + H+.","definition_xrefs":["EC:1.3.1.103","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-chloroacrylate reductase activity","secondary_identifiers":["MetaCyc:RXN-14536","RHEA:36591"],"termid":"GO:0102523"}


id: PBO:0041350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 3 open reading frame 86, pseudogene","termid":"PBO:0041350"}


id: PBO:0045973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EHBP1 antisense RNA 1","termid":"PBO:0045973"}


id: SO:0002296
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The possible discontinuous stretch of DNA that is the combination of one or several TFRSs whose bound TFs work jointly in the regulation of a promoter. ","definition_xrefs":["Bacterial_regulation_working_group:CMA","PMID:32665585"],"direct_ancestors":[{"relation_name":"has_part","term_name":"transcription_factor_regulatory_site","termid":"SO:0002295"},{"relation_name":"is_a","term_name":"transcriptional_cis_regulatory_region","termid":"SO:0001055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFRS_module","synonyms":[{"name":"TFRS module","type":"exact"},{"name":"TFRS phrase","type":"exact"},{"name":"transcription factor regulatory site module","type":"exact"},{"name":"transcription factor regulatory site phrase","type":"exact"}],"termid":"SO:0002296"}


id: GO:0032821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell proliferation as part of an immune response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"negative regulation of natural killer cell proliferation","termid":"GO:0032818"},{"relation_name":"is_a","term_name":"regulation of natural killer cell proliferation involved in immune response","termid":"GO:0032820"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"natural killer cell proliferation involved in immune response","termid":"GO:0002324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of natural killer cell proliferation involved in immune response","synonyms":[{"name":"down regulation of natural killer cell proliferation during immune response","type":"related"},{"name":"down-regulation of natural killer cell proliferation during immune response","type":"related"},{"name":"downregulation of natural killer cell proliferation during immune response","type":"related"},{"name":"inhibition of natural killer cell proliferation during immune response","type":"narrow"},{"name":"negative regulation of NK cell proliferation during immune response","type":"related"},{"name":"negative regulation of natural killer cell proliferation during immune response","type":"related"}],"termid":"GO:0032821"}


id: FYPO:0006746
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the fungal-type cell wall is thinner than normal at one or both cell tips.","definition_xrefs":["PMID:29689193","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell wall thickness during vegetative growth","termid":"FYPO:0002163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002946"],"is_obsolete":false,"name":"decreased cell wall thickness at cell tip during vegetative growth","synonyms":[{"name":"decreased cell wall thickness at cell end during vegetative growth","type":"exact"},{"name":"decreased cell wall thickness at cell tip during mitotic cell cycle","type":"related"},{"name":"reduced cell wall thickness at cell tip during vegetative growth","type":"exact"},{"name":"thin cell wall at cell tip during vegetative growth","type":"exact"}],"termid":"FYPO:0006746"}


id: PBO:0082646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of Rpd3L histone deacetylase complex; involved in silencing at telomeres, rDNA, and silent mating-type loci; involved in telomere maintenance","termid":"PBO:0082646"}


id: GO:0034434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A lipid modification process in which a sterol ester is formed by the combination of a carboxylic acid (often a fatty acid) and a sterol molecule (e.g. cholesterol).","definition_xrefs":["GOC:pde","GOC:rl","GOC:BHF","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete sterol esterification (obsolete GO:0034434)","termid":"GO:0034434"}


id: PBO:0002585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum resident protein required for packaging into COPII vesicles (predicted)","termid":"PBO:0002585"}


id: PBO:0067941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 243","termid":"PBO:0067941"}


id: FYPO:0007538
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to paromomycin. Cells stop growing (and may die) at a concentration of paromomycin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to paromomycin","synonyms":[{"name":"hypersensitive to paromomycin","type":"exact"},{"name":"sensitive to paromomycin during mitotic cell cycle","type":"related"},{"name":"sensitive to paromomycin during vegetative growth","type":"exact"}],"termid":"FYPO:0007538"}


id: PBO:0088699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Pet117","termid":"PBO:0088699"}


id: PATO:0000044
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/frequency"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rate","termid":"PATO:0000161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frequency","termid":"PATO:0000044"}


id: PBO:0003311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP kinase Pmk1","termid":"PBO:0003311"}


id: SO:0002362
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that codes for cytosolic SSU rRNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"cytosolic_rRNA_gene","termid":"SO:0002360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_SSU_rRNA_gene","synonyms":[{"name":"cytosolic small subunit rRNA gene","type":"exact"}],"termid":"SO:0002362"}


id: GO:0031581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Assembly of hemidesmosomes, integrin-containing protein complexes that bind to laminin in the basal lamina. Hemidesmosomes form the contact between the basal surface of epithelial cells and the underlying basal lamina.","definition_xrefs":["GOC:dgh","PMID:15983403"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-substrate junction assembly","termid":"GO:0007044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"hemidesmosome assembly","termid":"GO:0031581"}


id: FYPO:0006344
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found at the plasma membrane is observed there.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized protein during vegetative growth","termid":"FYPO:0000782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"protein mislocalized to plasma membrane during vegetative growth","synonyms":[{"name":"ectopic protein localization to plasma membrane during vegetative growth","type":"exact"},{"name":"protein mislocalised to plasma membrane during vegetative growth","type":"exact"},{"name":"protein mislocalized to plasma membrane during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006344"}


id: PBO:0072260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S20 pseudogene 35","termid":"PBO:0072260"}


id: GO:0034364
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process.","definition_xrefs":["GOC:expert_pt","GOC:pde","GOC:rl","GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma lipoprotein particle","termid":"GO:0034358"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005576","GO:0005575"],"is_obsolete":false,"name":"high-density lipoprotein particle","synonyms":[{"name":"HDL complex","type":"exact"},{"name":"HDL particle","type":"exact"},{"name":"HDL2","type":"related"},{"name":"HDL3","type":"related"},{"name":"high-density lipoprotein class complex","type":"exact"}],"termid":"GO:0034364"}


id: PBO:0034761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-8 family plus-end microtubule motor Klp5","termid":"PBO:0034761"}


id: PBO:0058191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4484","termid":"PBO:0058191"}


id: PR:O14226
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- exo84 gene.","definition_xrefs":["UniProtKB:O14226","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex component exo84 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F12.08c","synonyms":[{"name":"Spom972h-exo84","type":"exact"}],"termid":"PR:O14226"}


id: PATO:0000149
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000149 relative temperature (obsolete PATO:0000149)","termid":"PATO:0000149"}


id: GO:0019942
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to the target protein.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete NEDD8 class-dependent protein catabolic process (obsolete GO:0019942)","synonyms":[{"name":"NEDD8 class-dependent protein breakdown","type":"exact"},{"name":"NEDD8 class-dependent protein catabolic process","type":"exact"},{"name":"NEDD8 class-dependent protein catabolism","type":"exact"},{"name":"NEDD8 class-dependent protein degradation","type":"exact"},{"name":"RUB1-dependent protein catabolic process","type":"exact"},{"name":"RUB1-dependent protein catabolism","type":"exact"},{"name":"RUB1-dependent protein degradation","type":"exact"}],"termid":"GO:0019942"}


id: PATO:0001885
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrophobicity","termid":"PATO:0001884"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrophobic","termid":"PATO:0001885"}


id: GO:0061763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The organelle membrane fusion process in which the membrane of a multivesicular body fuses with a lysosome to create a hybrid organelle.","definition_xrefs":["GOC:pad","GOC:dph","PMID:21118109","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion","termid":"GO:0006906"},{"relation_name":"is_a","term_name":"lysosomal membrane organization","termid":"GO:0097212"},{"relation_name":"part_of","term_name":"endosome to lysosome transport via multivesicular body sorting pathway","termid":"GO:0032510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"multivesicular body-lysosome fusion","synonyms":[{"name":"MVB-lysosome fusion","type":"exact"},{"name":"endosome-lysosome fusion","type":"related"},{"name":"fusion of MVB to lysosome","type":"exact"},{"name":"fusion of multivesicular body to lysosome","type":"exact"},{"name":"late endosome-lysosome fusion","type":"related"}],"termid":"GO:0061763"}


id: GO:0060066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reproductive developmental process whose specific outcome is the progression of an oviduct over time, from its formation to the mature structure. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism.","definition_xrefs":["GOC:dph","PMID:22918811","PMID:27875265","GOC:ebc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"is_a","term_name":"reproductive structure development","termid":"GO:0048608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oviduct development","synonyms":[{"name":"Mullerian tract development","type":"related"},{"name":"fallopian tube development","type":"narrow"}],"termid":"GO:0060066"}


id: PBO:0060116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 17","termid":"PBO:0060116"}


id: PBO:0053513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 501","termid":"PBO:0053513"}


id: PBO:0065968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD51 paralog B","termid":"PBO:0065968"}


id: PBO:0003082
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.2.1.28","termid":"PBO:0003082"}


id: PBO:0071470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 11","termid":"PBO:0071470"}


id: GO:0005973
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete fibrinogen beta chain (obsolete GO:0005973)","synonyms":[{"name":"fibrinogen beta chain","type":"exact"}],"termid":"GO:0005973"}


id: GO:0043699
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A tissue-specific, membrane-bounded cytoplasmic organelle within which uric acid and/or purines crystalize in reflective stacks. Leucosomes are synthesized in leucophore cells and have a whitish cast.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment granule","termid":"GO:0048770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0031410"],"is_obsolete":false,"name":"leucosome","synonyms":[{"name":"refractosome","type":"exact"}],"termid":"GO:0043699"}


id: SO:0001027
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A genotype is a variant genome, complete or incomplete.","definition_xrefs":["SO:immuno_workshop"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variant_collection","termid":"SO:0001507"},{"relation_name":"variant_of","term_name":"genome","termid":"SO:0001026"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"genotype","secondary_identifiers":["http://en.wikipedia.org/wiki/Genotype"],"termid":"SO:0001027"}


id: PBO:0050449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HNRNPUL2-BSCL2 readthrough (NMD candidate)","termid":"PBO:0050449"}


id: PBO:0050864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ID2 antisense RNA 1","termid":"PBO:0050864"}


id: GO:0032063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate of translation initiation, as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translational initiation in response to stress","termid":"GO:0032057"},{"relation_name":"is_a","term_name":"negative regulation of translation in response to osmotic stress","termid":"GO:0032061"},{"relation_name":"is_a","term_name":"regulation of translational initiation in response to osmotic stress","termid":"GO:0043561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of translational initiation in response to osmotic stress","synonyms":[{"name":"down regulation of translation initiation in response to osmotic stress","type":"exact"},{"name":"down-regulation of translation initiation in response to osmotic stress","type":"exact"},{"name":"downregulation of translation initiation in response to osmotic stress","type":"exact"},{"name":"inhibition of translation initiation in response to osmotic stress","type":"narrow"}],"termid":"GO:0032063"}


id: PBO:0000170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetylglucosaminyltransferase (predicted)","termid":"PBO:0000170"}


id: PBO:0003924
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.5.1.15","termid":"PBO:0003924"}


id: FYPO:0005062
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the methylation of lysine at position 4 of histone H3 in telomeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone methylation during vegetative growth","termid":"FYPO:0000869"},{"relation_name":"is_a","term_name":"abnormal histone H3-K4 methylation during vegetative growth","termid":"FYPO:0002330"},{"relation_name":"is_a","term_name":"abnormal histone methylation at telomere during vegetative growth","termid":"FYPO:0007375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001985","FYPO:0001320","FYPO:0002274","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased histone H3-K4 methylation at telomere during vegetative growth","synonyms":[{"name":"increased histone H3 K4 methylation at telomere","type":"exact"},{"name":"increased histone H3-K4 methylation at telomere during mitotic cell cycle during vegetative growth","type":"related"},{"name":"increased histone H3-K4 methylation at telomeric region","type":"exact"},{"name":"increased histone H3K4 methylation at telomere","type":"exact"},{"name":"increased histone H3K4me at telomere","type":"exact"},{"name":"increased histone lysine H3 K4 methylation at telomere","type":"exact"}],"termid":"FYPO:0005062"}


id: FYPO:0003480
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which one or more transfer RNA (tRNA) molecules contains no queuosine residues.","definition_xrefs":["PMID:24911101","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased queuosine level in tRNA","termid":"FYPO:0003427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0003427"}],"interesting_parent_ids":["FYPO:0003427","FYPO:0001985"],"is_obsolete":false,"name":"queuosine absent from tRNA","termid":"FYPO:0003480"}


id: PBO:0047214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 222 member B","termid":"PBO:0047214"}


id: PBO:0083075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dioxygenase that catalyzes alpha-oxygenation of 2-hydroxy fatty acids; involved in metabolism of phytosphingosine; not an essential gene","termid":"PBO:0083075"}


id: PBO:0076076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatid perinuclear RNA binding protein","termid":"PBO:0076076"}


id: PBO:0078816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TROAP and PRPH antisense RNA 1","termid":"PBO:0078816"}


id: PBO:0051631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inner mitochondrial membrane peptidase subunit 1 pseudogene 1","termid":"PBO:0051631"}


id: GO:0034339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a ligand-bound hormone receptor acts in the nucleus to modulate the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:mh","GO_REF:0000021","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor (obsolete GO:0034339)","synonyms":[{"name":"regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor","type":"exact"}],"termid":"GO:0034339"}


id: PBO:0109027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTTG1 pseudogene 2","termid":"PBO:0109027"}


id: PR:Q09739
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A meiotic nuclear division protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00227","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic coiled-coil protein 7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13A11.03","secondary_identifiers":["UniProtKB:Q09739"],"synonyms":[{"name":"Spom972h-MND1","type":"exact"},{"name":"meiotically up-regulated gene 32 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09739"}


id: GO:1900376
data:
  {"annotated_genes":["SJAG_00792"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90105],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of secondary metabolite biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"is_a","term_name":"regulation of secondary metabolic process","termid":"GO:0043455"},{"relation_name":"regulates","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"regulation of secondary metabolite biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of secondary metabolite biosynthesis","type":"exact"}],"termid":"GO:1900376","terms_by_termid":{"GO:1905569":null}}


id: PBO:0004338
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.2.1.51","termid":"PBO:0004338"}


id: GO:0019368
data:
  {"annotated_genes":["SJAG_02885","SJAG_01356"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85536,87966],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034625"}]},"cv_name":"biological_process","definition":"Elongation of a fatty acid chain into which one or more C-C double bonds have been introduced.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid elongation","termid":"GO:0030497"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01356":null,"SJAG_02885":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"fatty acid elongation, unsaturated fatty acid","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY0-862"],"termid":"GO:0019368","terms_by_termid":{"GO:0034625":null}}


id: PBO:0057991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3915","termid":"PBO:0057991"}


id: PBO:0018026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UNC-50 family Golgi membrane protein","termid":"PBO:0018026"}


id: PBO:0108837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATOR1-SEACIT GTPase activating complex subunit Npr3","termid":"PBO:0108837"}


id: PBO:0074174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 37 member 1","termid":"PBO:0074174"}


id: PBO:0027900
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_calcium_import","termid":"PBO:0027900"}


id: GO:0098537
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Nucleus with two or more lobes connected by a thin filament that contains no internal chromatin. Examples include the nuclei of mature basophils, eosinophils and neutrophils in mice and humans.","definition_xrefs":["GOC:tfm","GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete lobed nucleus (obsolete GO:0098537)","termid":"GO:0098537"}


id: PBO:0003088
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expressed during S phase","termid":"PBO:0003088"}


id: GO:0042943
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of D-amino acids from one side of a membrane to the other. D-amino acids are the D-enantiomers of amino acids.","definition_xrefs":["GOC:mah","GOC:jl","ISBN:0815340729","GOC:jsg","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"D-amino acid transmembrane transporter activity","synonyms":[{"name":"D-amino acid transporter activity","type":"broad"}],"termid":"GO:0042943"}


id: GO:0018104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of covalently linking peptidoglycan (murein) to proteins.","definition_xrefs":["GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidoglycan biosynthetic process","termid":"GO:0009252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0071554","GO:0044085"],"is_obsolete":false,"name":"peptidoglycan-protein cross-linking","termid":"GO:0018104"}


id: PBO:0001130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain protein Swi6","termid":"PBO:0001130"}


id: GO:0010369
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A region in which centric, heterochromatic portions from more than one chromosomes form a compact structure.","definition_xrefs":["PMID:12384572","PMID:16831888","PMID:15053486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular non-membrane-bounded organelle","termid":"GO:0043232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"chromocenter","termid":"GO:0010369"}


id: PBO:0108594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AFG2 AAA ATPase homolog B","termid":"PBO:0108594"}


id: FYPO:0007532
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which arrested replication forks do not colocalize with nuclear pore complexes (NPCs) longer than actively replicating forks. Normally, arrested replication forks relocate to NPCs as part of replication fork processing, and remain anchored at NPCs while recombination-dependent replication takes place.","definition_xrefs":["PomBase:mah","PMID:33159083"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork processing","termid":"FYPO:0003586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000293"],"is_obsolete":false,"name":"decreased replication fork colocalization with nuclear pore complex","synonyms":[{"name":"decreased replication fork colocalization with NPC","type":"exact"},{"name":"decreased replication fork colocalization with nuclear pore","type":"exact"},{"name":"decreased replication fork colocalization with nuclear pore complex during mitotic S phase","type":"exact"},{"name":"decreased replication fork colocalization with nuclear pore complex during mitotic cell cycle","type":"related"},{"name":"decreased replication fork colocalization with nuclear pore complex during vegetative growth","type":"exact"},{"name":"decreased replication fork relocation to nuclear pore complex","type":"exact"},{"name":"decreased replication fork relocation to nuclear pore complex during mitotic S phase","type":"exact"},{"name":"reduced replication fork colocalization with nuclear pore complex","type":"exact"}],"termid":"FYPO:0007532"}


id: PBO:0084424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Major mitochondrial D-lactate dehydrogenase; oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane","termid":"PBO:0084424"}


id: PBO:0050750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 12","termid":"PBO:0050750"}


id: PR:Q9USJ7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nro1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USJ7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"negative regulator of ofd1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.07","synonyms":[{"name":"Spom972h-nro1","type":"exact"}],"termid":"PR:Q9USJ7"}


id: PBO:0091427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrogenase","termid":"PBO:0091427"}


id: CHEBI:26948
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine","termid":"CHEBI:26948"}


id: GO:0140844
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of ADP-ribose groups to the glutamate-2 residue of the N-terminal tail of histone H2B (or an equivalent residue).","definition_xrefs":["PMID:27530147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NAD+-protein-glutamate ADP-ribosyltransferase activity","termid":"GO:0140807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"NAD+-histone H2BE2 glutamate ADP-ribosyltransferase activity","secondary_identifiers":["RHEA:58224"],"synonyms":[{"name":"NAD+-histone H2B-E2 glutamate ADP-ribosyltransferase activity","type":"exact"},{"name":"NAD+-histone-glutamate ADP-ribosyltransferase activity (H2B-E2 specific)","type":"exact"}],"termid":"GO:0140844"}


id: PBO:0002012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centaurin ADOP ribosylation factor GTPase activating protein family","termid":"PBO:0002012"}


id: PBO:0036331
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by human COQ9","termid":"PBO:0036331"}


id: FYPO:0007095
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the actin fusion focus is increased.","definition_xrefs":["PMID:31495586","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to shmoo tip","termid":"FYPO:0004802"},{"relation_name":"is_a","term_name":"abnormal protein localization to actin fusion focus","termid":"FYPO:0006503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased protein localization to actin fusion focus","synonyms":[{"name":"increased protein localisation to actin fusion focus","type":"exact"}],"termid":"FYPO:0007095"}


id: GO:0036259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of raffinose that occur in the presence of oxygen.","definition_xrefs":["GOC:al","PMID:10082789"],"direct_ancestors":[{"relation_name":"is_a","term_name":"raffinose catabolic process","termid":"GO:0034484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"aerobic raffinose catabolic process","synonyms":[{"name":"aerobic raffinose breakdown","type":"exact"},{"name":"aerobic raffinose catabolism","type":"exact"},{"name":"aerobic raffinose degradation","type":"exact"}],"termid":"GO:0036259"}


id: PBO:0027097
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_Rad52_foci_at_rDNA_replication_pause_sites","termid":"PBO:0027097"}


id: PBO:0070161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 75 pseudogene","termid":"PBO:0070161"}


id: PBO:0062553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 9 subfamily R member 1 pseudogene","termid":"PBO:0062553"}


id: GO:0102174
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4alpha-formyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol + NADH + O2 = 4alpha-carboxy-4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol + NAD + H2O.","definition_xrefs":["EC:1.14.13.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"4alpha-formyl,4beta,14alpha-dimethyl-9beta,19-cyclo-5alpha-ergost-24(241)-en-3beta-ol-4alpha-methyl oxidase activity","secondary_identifiers":["RHEA:58864","MetaCyc:RXN-11927"],"termid":"GO:0102174"}


id: GO:1903700
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a caecum over time, from its formation to the mature structure.","definition_xrefs":["GO_REF:0000094","GOC:TermGenie","ISBN:0-683-40008-8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"caecum development","synonyms":[{"name":"blind intestine development","type":"related"},{"name":"blindgut development","type":"related"},{"name":"caeca development","type":"narrow"},{"name":"ceca development","type":"narrow"},{"name":"cecum development","type":"exact"},{"name":"intestinum caecum development","type":"related"},{"name":"intestinum crassum caecum development","type":"exact"},{"name":"intestinum crassum cecum development","type":"related"}],"termid":"GO:1903700"}


id: PBO:0090681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial [2Fe-2S] cluster assembly ferredoxin Etp1/ cytochrome oxidase cofactor Cox15, fusion protein","termid":"PBO:0090681"}


id: GO:0019029
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.","definition_xrefs":["UniProtKB-KW:KW-1139","ISBN:071673706X","VZ:885"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral capsid","termid":"GO:0019028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"helical viral capsid","termid":"GO:0019029"}


id: GO:1903445
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of protein from ciliary membrane to plasma membrane.","definition_xrefs":["GOC:krc","GO_REF:0000078","GOC:cilia","GOC:TermGenie","PMID:22139371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transport within lipid bilayer","termid":"GO:0032594"},{"relation_name":"is_a","term_name":"establishment of protein localization to plasma membrane","termid":"GO:0061951"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"protein transport from ciliary membrane to plasma membrane","termid":"GO:1903445"}


id: SO:0000711
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene with mRNA recoded by translational bypass.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"recoded_by_translational_bypass","termid":"SO:0000886"},{"relation_name":"is_a","term_name":"gene_with_recoded_mRNA","termid":"SO:0000693"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_with_mRNA_recoded_by_translational_bypass","synonyms":[{"name":"gene with mRNA recoded by translational bypass","type":"exact"}],"termid":"SO:0000711"}


id: GO:1990953
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of vesicles and protein complexes carried out by molecular motors, kinesins and dynein, along the microtubule tracks within the manchette and by myosin along actin filaments.","definition_xrefs":["PMID:24440897","PMID:22319670","GOC:krc","PMID:26792866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"},{"relation_name":"is_a","term_name":"protein transport along microtubule","termid":"GO:0098840"},{"relation_name":"part_of","term_name":"spermatid development","termid":"GO:0007286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"intramanchette transport","synonyms":[{"name":"IMT","type":"related"}],"termid":"GO:1990953"}


id: CHEBI:15422
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP","termid":"CHEBI:15422"}


id: FYPO:0001174
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cells grow normally (i.e. indistinguishably from wild type) in a medium containing sucrose as the carbon source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0000003","FYPO:0000139","FYPO:0002058","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on sucrose carbon source","synonyms":[{"name":"normal cell population growth on sucrose carbon source","type":"exact"},{"name":"normal vegetative cell population growth on sucrose carbon source","type":"exact"}],"termid":"FYPO:0001174"}


id: GO:0048476
data:
  {"annotated_genes":["SJAG_00623","SJAG_01044"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[97609,113283],"is_not":false,"summary":null,"term":"GO:0048476"}]},"cv_name":"cellular_component","definition":"An endodeoxyribonuclease complex that resolves the 4-way DNA intermediates of a Holliday junction into two separate duplex DNA molecules. Can be branch-migration associated.","definition_xrefs":["PMID:12374758","PMID:11207366"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endodeoxyribonuclease complex","termid":"GO:1905347"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00623":null,"SJAG_01044":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Holliday junction resolvase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Mus81-Eme1 complex","type":"narrow"},{"name":"Mus81-Eme1 holliday resolvase complex","type":"narrow"},{"name":"Mus81-Eme2 complex","type":"narrow"},{"name":"Mus81-Eme2 holliday resolvase complex","type":"narrow"},{"name":"resolvasome","type":"exact"}],"termid":"GO:0048476","terms_by_termid":{"GO:0048476":null}}


id: SO:0002122
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A germline immunoglobulin gene.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immune_system_gene","termid":"SO:0002121"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin_gene","synonyms":[{"name":"All_IG_genes","type":"exact"},{"name":"IG_genes","type":"exact"}],"termid":"SO:0002122"}


id: PBO:0077405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM139 antisense RNA 1","termid":"PBO:0077405"}


id: PBO:0113556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3-K4 methyltransferase, Set1C/COMPASS complex, Set1","termid":"PBO:0113556"}


id: PBO:0042258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 4","termid":"PBO:0042258"}


id: PBO:0066160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RB binding protein 9, serine hydrolase","termid":"PBO:0066160"}


id: GO:0106202
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of amno acids and peptides linked to a decarboxylation reaction.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on amino acids and peptides linked to a decarboxylation reaction (obsolete GO:0106202)","secondary_identifiers":["EC:7.4.4.-"],"termid":"GO:0106202"}


id: SO:1000067
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A mutation causing a disruption of the translational reading frame, due to the deletion of a nucleotide.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000067 sequence_variant_causing_minus_1_frameshift (obsolete SO:1000067)","synonyms":[{"name":"minus 1 frameshift mutation","type":"exact"},{"name":"sequence variant causing minus 1 frameshift","type":"exact"}],"termid":"SO:1000067"}


id: PATO:0000028
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000028 macromolecular composition (obsolete PATO:0000028)","termid":"PATO:0000028"}


id: GO:0075275
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that leads to the development of a telium, which is a teliospore-bearing sorus of the rust fungi.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spore-bearing structure development","termid":"GO:0075259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"telium development","termid":"GO:0075275"}


id: FYPO:0001934
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing glycerol as the carbon source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell population growth on glycerol carbon source","termid":"FYPO:0000684"},{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0002058","FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0002060"],"is_obsolete":false,"name":"abolished cell population growth on glycerol carbon source","synonyms":[{"name":"abolished glycerol utilization","type":"related"},{"name":"abolished growth on glycerol carbon source","type":"broad"},{"name":"abolished vegetative cell population growth on glycerol carbon source","type":"exact"},{"name":"cell population growth on glycerol carbon source abolished","type":"exact"}],"termid":"FYPO:0001934"}


id: GO:0045669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of osteoblast differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of osteoblast differentiation","termid":"GO:0045667"},{"relation_name":"positively_regulates","term_name":"osteoblast differentiation","termid":"GO:0001649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of osteoblast differentiation","synonyms":[{"name":"activation of osteoblast differentiation","type":"narrow"},{"name":"stimulation of osteoblast differentiation","type":"narrow"},{"name":"up regulation of osteoblast differentiation","type":"exact"},{"name":"up-regulation of osteoblast differentiation","type":"exact"},{"name":"upregulation of osteoblast differentiation","type":"exact"}],"termid":"GO:0045669"}


id: FYPO:0007261
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which telomere tethering at the nuclear periphery is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal telomere tethering at nuclear periphery during vegetative growth","termid":"FYPO:0001515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased telomere tethering at nuclear periphery during vegetative growth","synonyms":[{"name":"decreased mitotic telomere tethering at nuclear periphery during vegetative growth","type":"exact"},{"name":"decreased telomere anchoring at nuclear periphery during vegetative growth","type":"exact"},{"name":"decreased telomere tethering at nuclear periphery during mitotic cell cycle","type":"related"},{"name":"decreased telomere tethering to NE during vegetative growth","type":"exact"},{"name":"reduced telomere tethering at nuclear periphery during vegetative growth","type":"exact"}],"termid":"FYPO:0007261"}


id: PBO:0002249
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.40","termid":"PBO:0002249"}


id: GO:0031380
data:
  {"annotated_genes":["SJAG_03193","SJAG_03356","SJAG_02725"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[95644,111592,114164],"is_not":false,"summary":null,"term":"GO:0031380"}]},"cv_name":"cellular_component","definition":"A complex required for RNAi mediated heterochromatin assembly. In S. pombe this contains RNA-directed RNA polymerase, a putative helicase and a protein containing a pap25 associated domain.","definition_xrefs":["GOC:vw","PMID:15607976"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA-directed RNA polymerase complex","termid":"GO:0031379"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02725":null,"SJAG_03193":null,"SJAG_03356":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"nuclear RNA-directed RNA polymerase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"RDRC","type":"exact"},{"name":"Rdr1 complex","type":"narrow"}],"termid":"GO:0031380","terms_by_termid":{"GO:0031380":null}}


id: FYPO:0006941
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which one or more proteins is localized to actin cortical patches for a longer time than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to actin cortical patch","termid":"FYPO:0000742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of protein localization to actin cortical patch","synonyms":[{"name":"increased duration of protein localisation to actin cortical patch","type":"exact"},{"name":"increased duration of protein localization to F-actin patch","type":"exact"},{"name":"increased duration of protein localization to actin cortical patch during mitotic cell cycle","type":"related"},{"name":"increased duration of protein localization to actin cortical patch during vegetative growth","type":"exact"},{"name":"increased duration of protein localization to actin cortical patch involved in mitotic cytokinesis","type":"exact"},{"name":"increased duration of protein localization to actin patch","type":"exact"}],"termid":"FYPO:0006941"}


id: GO:0006289
data:
  {"annotated_genes":["SJAG_01887","SJAG_00941","SJAG_01698","SJAG_00198","SJAG_02556","SJAG_01262","SJAG_01049","SJAG_00512","SJAG_02527","SJAG_02818","SJAG_04368","SJAG_03855","SJAG_03618","SJAG_02908","SJAG_03206","SJAG_01119","SJAG_00758","SJAG_00500","SJAG_00901","SJAG_03724","SJAG_04778","SJAG_00995","SJAG_02116","SJAG_02521","SJAG_01207","SJAG_03734","SJAG_02031","SJAG_04540","SJAG_03722","SJAG_03026","SJAG_04147","SJAG_02334","SJAG_03613","SJAG_00119","SJAG_01480","SJAG_04353","SJAG_03612","SJAG_02200","SJAG_00814","SJAG_04114","SJAG_01540","SJAG_03454"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61760,84326,84666,85921,88196,88554,88585,89700,92204,99264,102061,104250,104622,106174,107395,107574,107707,108240,111308,111698,112438,112878,112879,112898,113330,114947],"is_not":false,"summary":null,"term":"GO:0006289"},{"annotations":[84211],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070911"},{"annotations":[89028,114948,89701,106175,107575],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901255"},{"annotations":[103485,110061,105254,101054],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006297"},{"annotations":[105121],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006294"},{"annotations":[112881,112880],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000720"},{"annotations":[86290,105521,84212,107300,115107,92803,97869,84398,88000,86899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006283"}]},"cv_name":"biological_process","definition":"A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).","definition_xrefs":["PMID:10197977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA repair","termid":"GO:0006281"}],"gene_count":42,"genes_by_uniquename":{"SJAG_00119":null,"SJAG_00198":null,"SJAG_00500":null,"SJAG_00512":null,"SJAG_00758":null,"SJAG_00814":null,"SJAG_00901":null,"SJAG_00941":null,"SJAG_00995":null,"SJAG_01049":null,"SJAG_01119":null,"SJAG_01207":null,"SJAG_01262":null,"SJAG_01480":null,"SJAG_01540":null,"SJAG_01698":null,"SJAG_01887":null,"SJAG_02031":null,"SJAG_02116":null,"SJAG_02200":null,"SJAG_02334":null,"SJAG_02521":null,"SJAG_02527":null,"SJAG_02556":null,"SJAG_02818":null,"SJAG_02908":null,"SJAG_03026":null,"SJAG_03206":null,"SJAG_03454":null,"SJAG_03612":null,"SJAG_03613":null,"SJAG_03618":null,"SJAG_03722":null,"SJAG_03724":null,"SJAG_03734":null,"SJAG_03855":null,"SJAG_04114":null,"SJAG_04147":null,"SJAG_04353":null,"SJAG_04368":null,"SJAG_04540":null,"SJAG_04778":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0006281","GO:0008150"],"is_obsolete":false,"name":"nucleotide-excision repair","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0045001"],"synonyms":[{"name":"NER","type":"exact"},{"name":"intrastrand cross-link repair","type":"related"},{"name":"pyrimidine-dimer repair, DNA damage excision","type":"exact"}],"termid":"GO:0006289","terms_by_termid":{"GO:0000720":null,"GO:0006283":null,"GO:0006289":null,"GO:0006294":null,"GO:0006297":null,"GO:0070911":null,"GO:1901255":null}}


id: FYPO:0004958
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in the mitochondrion differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered RNA level during vegetative growth","termid":"FYPO:0001326"},{"relation_name":"is_a","term_name":"altered level of substance in mitochondrion","termid":"FYPO:0004957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"altered RNA level in mitochondrion","synonyms":[{"name":"abnormal RNA level in mitochondrion","type":"exact"},{"name":"abnormal RNA level in mitochondrion during vegetative growth","type":"exact"},{"name":"abnormal mitochondrial RNA level","type":"exact"},{"name":"abnormal mitochondrial RNA level during vegetative growth","type":"exact"},{"name":"altered RNA level in mitochondrion during mitotic cell cycle","type":"related"},{"name":"altered mitochondrial RNA level","type":"exact"},{"name":"altered transcript level in mitochondrion","type":"exact"}],"termid":"FYPO:0004958"}


id: PBO:0039782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aquaporin 9","termid":"PBO:0039782"}


id: PBO:0079709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquilin 3","termid":"PBO:0079709"}


id: FYPO:0003937
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which cell population growth is increased relative to normal. Increased growth may reflect an increased growth rate (i.e. faster growth), growth that occurs to a greater extent than normal, or both. Cell population growth refers to an increase in the number of cells in the population as individual cells grow and divide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell population growth","termid":"FYPO:0000045"},{"relation_name":"is_a","term_name":"viable cell population","termid":"FYPO:0002058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0002058","FYPO:0002057","FYPO:0005447"],"is_obsolete":false,"name":"increased cell population growth","synonyms":[{"name":"fast aerobic cell population growth","type":"narrow"},{"name":"increased aerobic cell population growth","type":"narrow"},{"name":"increased growth","type":"broad"}],"termid":"FYPO:0003937"}


id: PBO:0047694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FLVCR1 divergent transcript","termid":"PBO:0047694"}


id: PBO:0068634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 14, pseudogene","termid":"PBO:0068634"}


id: MOD:00943
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label","definition_xrefs":["Unimod:476","PubMed:12643539"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-trimethylammoniumbutanoyl derivatized residue","synonyms":[{"name":"4-trimethyllammoniumbutyryl-","type":"related"},{"name":"TMAB","type":"related"}],"termid":"MOD:00943"}


id: GO:0097342
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex whose core components are the receptor-interacting serine/threonine-protein kinases RIPK1 and RIPK3 (also called RIP1 and RIP3). Formation of the ripoptosome can induce an extrinsic apoptotic signaling pathway or a necroptotic signaling pathway. The composition of this protein complex may depend on several factors including nature of the signal, cell type and more.","definition_xrefs":["PMID:22265414","GOC:mtg_apoptosis","GOC:bhm","PMID:22274400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005737","GO:0005829","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"ripoptosome","synonyms":[{"name":"TNFR1 complex II","type":"narrow"},{"name":"Tnfr1-CII","type":"narrow"},{"name":"necrosome","type":"related"}],"termid":"GO:0097342"}


id: PBO:0084867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the small subunit; has similarity to E. coli S10 ribosomal protein; essential for viability, unlike most other mitoribosomal proteins","termid":"PBO:0084867"}


id: PBO:0090099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Stx8","termid":"PBO:0090099"}


id: PBO:0083251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; identified by homology to a hemiascomycetous yeast protein","termid":"PBO:0083251"}


id: MOD:01136
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dioctyl phthalate","termid":"MOD:01136"}


id: PBO:0031423
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell_population_phenotype","termid":"PBO:0031423"}


id: GO:0016887
data:
  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of the reaction: ATP + H2O = ADP + H+ phosphate. 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hydrolysis activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-3371422","Reactome:R-HSA-5618093","Reactome:R-HSA-6809015","Reactome:R-HSA-6811422","Reactome:R-HSA-9749350","Reactome:R-HSA-6814678","Reactome:R-HSA-917693","GO:0042623","Reactome:R-HSA-416985","GO:0004002","Reactome:R-HSA-6814670","Reactome:R-HSA-9668415","Reactome:R-HSA-9706399","Reactome:R-HSA-8868658","Reactome:R-HSA-9038161","Reactome:R-HSA-5694425","Reactome:R-HSA-8847638","Reactome:R-HSA-159101","Reactome:R-HSA-8939203","Reactome:R-HSA-6814683","Reactome:R-HSA-5654989","Reactome:R-HSA-9609860"],"synonyms":[{"name":"ATP hydrolase activity","type":"exact"},{"name":"ATP monophosphatase activity","type":"related"},{"name":"ATP phosphohydrolase activity","type":"exact"},{"name":"adenosine 5'-triphosphatase activity","type":"exact"},{"name":"adenosine triphosphatase activity","type":"exact"},{"name":"adenosinetriphosphatase activity","type":"exact"}],"termid":"GO:0016887","terms_by_termid":{"GO:0016887":null}}


id: GO:0008612
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-lysine to form hypusine, peptidyl-N6-(4-amino-2-hydroxybutyl)-L-lysine.","definition_xrefs":["GOC:ma","ISBN:0198547684","RESID:AA0116"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"},{"relation_name":"is_a","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine modification to peptidyl-hypusine","secondary_identifiers":["GO:0046515"],"synonyms":[{"name":"hypusine anabolism","type":"exact"},{"name":"hypusine anabolism from peptidyl-lysine","type":"exact"},{"name":"hypusine biosynthesis","type":"exact"},{"name":"hypusine biosynthetic process","type":"exact"},{"name":"hypusine biosynthetic process from peptidyl-lysine","type":"exact"},{"name":"hypusine formation","type":"exact"},{"name":"hypusine formation from peptidyl-lysine","type":"exact"},{"name":"hypusine synthesis","type":"exact"},{"name":"hypusine synthesis from peptidyl-lysine","type":"exact"},{"name":"hypusinylation","type":"exact"},{"name":"protein hypusination","type":"exact"}],"termid":"GO:0008612"}


id: PR:G2TRV0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wtf8 gene.","definition_xrefs":["UniProtKB:G2TRV0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein wtf8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC306.10","synonyms":[{"name":"Spom972h-wtf8","type":"exact"}],"termid":"PR:G2TRV0"}


id: PBO:0086270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein tyrosine phosphatase; involved in cell cycle control and retrograde protein transport; regulates the phosphorylation state of Cdc28p; modulates phosphorylation of retromer component Vps26p; homolog of S. pombe cdc25","termid":"PBO:0086270"}


id: PBO:0087277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain protein implicated in regulating actin polymerization; able to recruit actin polymerization machinery through its SH3 domains; colocalizes with cortical actin patches and Las17p; interacts with type I myosins","termid":"PBO:0087277"}


id: PBO:0055375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2804","termid":"PBO:0055375"}


id: PBO:0063561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PELO antisense RNA 1","termid":"PBO:0063561"}


id: FYPO:0007380
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is longer than normal, and a new growth zone forms along the lateral portion of the cell (often in the middle) before septation, such that a single cell grows in the form of the letter T.","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated vegetative cell","termid":"FYPO:0001122"},{"relation_name":"is_a","term_name":"T-shaped vegetative cell","termid":"FYPO:0007379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0005568"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005568","FYPO:0000004","FYPO:0000002","FYPO:0001985","FYPO:0000005","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"elongated T-shaped vegetative cell","synonyms":[{"name":"elongated T-shaped cell during vegetative growth","type":"exact"},{"name":"elongated T-shaped vegetative cell during mitotic cell cycle","type":"related"},{"name":"long T-shaped vegetative cell","type":"exact"}],"termid":"FYPO:0007380"}


id: PBO:0065748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyrroline-5-carboxylate reductase 3","termid":"PBO:0065748"}


id: PBO:0073732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 1 member 2","termid":"PBO:0073732"}


id: PBO:0059390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S24 pseudogene 1","termid":"PBO:0059390"}


id: GO:0016029
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane-bounded compartment that is found at the base of the rhabdomere and contains stored calcium, InsP3 receptors and smooth endoplasmic reticulum Ca2+-ATPase.","definition_xrefs":["PMID:11707492","PMID:8646774"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum subcompartment","termid":"GO:0098827"},{"relation_name":"is_a","term_name":"smooth endoplasmic reticulum cisterna","termid":"GO:0120082"},{"relation_name":"part_of","term_name":"rhabdomere","termid":"GO:0016028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005783","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"subrhabdomeral cisterna","synonyms":[{"name":"SMC","type":"related"},{"name":"submicrovillar cisterna","type":"exact"}],"termid":"GO:0016029"}


id: PBO:0071869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 7","termid":"PBO:0071869"}


id: GO:0099626
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Regulation of presynaptic cytosolic calcium ion concentrations via the action of voltage-gated calcium ion channels.","definition_xrefs":["PMID:15548655","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated calcium channel activity involved in regulation of cytosolic calcium levels","termid":"GO:0099511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels","synonyms":[{"name":"voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:0099626"}


id: PBO:0089974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial rhomboid protease","termid":"PBO:0089974"}


id: PBO:0072461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 25","termid":"PBO:0072461"}


id: GO:0102342
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (R)-3-hydroxycerotoyl-CoA + NADP = 3-oxohexacosanoyl-CoA + NADPH + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-cerotoyl-CoA reductase activity (obsolete GO:0102342)","termid":"GO:0102342"}


id: PBO:0082924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytochrome c oxidase subunit; required for assembly of the Complex III-Complex IV supercomplex, and for assembly of Cox13p and Rcf2p into cytochrome c oxidase; similar to Rcf2p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; required for growth under hypoxic conditions; member of the hypoxia induced gene family; C. elegans and human orthologs are functional in yeast","termid":"PBO:0082924"}


id: PBO:0091253
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is not functionally complemented by S. cerevisiae CHS2","termid":"PBO:0091253"}


id: GO:0010517
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phospholipase activity, the hydrolysis of a phospholipid.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipase activity","termid":"GO:0060191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of phospholipase activity","termid":"GO:0010517"}


id: FYPO:0002578
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of hydroxyurea than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0005447","FYPO:0002682","FYPO:0000003"],"is_obsolete":false,"name":"resistance to hydroxyurea","synonyms":[{"name":"resistance to HU","type":"exact"},{"name":"resistance to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"resistance to hydroxyurea during vegetative growth","type":"exact"},{"name":"resistant to hydroxyurea","type":"exact"}],"termid":"FYPO:0002578"}


id: PBO:0003990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO E1-like activator enzyme Fub2 (predicted)","termid":"PBO:0003990"}


id: PBO:0031206
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_calcium_ion","termid":"PBO:0031206"}


id: PBO:0047262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 242 member E","termid":"PBO:0047262"}


id: PBO:0024838
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae ATM1","termid":"PBO:0024838"}


id: PBO:0087740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Ssh1 translocon complex; Sec61p homolog involved in co-translational pathway of protein translocation; not essential","termid":"PBO:0087740"}


id: GO:0047246
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: luteolin 7-O-beta-D-glucosiduronate + UDP-alpha-D-glucuronate = H+ + luteolin 7-O-[(beta-D-glucosiduronate)-(1->2)-(beta-D-glucosiduronate)] + UDP.","definition_xrefs":["RHEA:14149","EC:2.4.1.190"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronosyltransferase activity","termid":"GO:0015020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"luteolin-7-O-glucuronide 7-O-glucuronosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.190-RXN","KEGG_REACTION:R06827"],"synonyms":[{"name":"LMT activity","type":"related"},{"name":"UDP-glucuronate:luteolin 7-O-glucuronide-glucuronosyltransferase activity","type":"related"},{"name":"UDP-glucuronate:luteolin-7-O-beta-D-glucuronide 2''-O-glucuronosyltransferase activity","type":"related"},{"name":"luteolin-7-O-glucuronide 2''-O-glucuronosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucuronate-luteolin 7-O-glucuronide glucuronosyltransferase activity","type":"related"}],"termid":"GO:0047246"}


id: GO:1902414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a cell junction.","definition_xrefs":["PMID:18332111","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to cell junction","synonyms":[{"name":"protein localisation in cell junction","type":"exact"},{"name":"protein localisation to cell junction","type":"exact"},{"name":"protein localization in cell junction","type":"exact"}],"termid":"GO:1902414"}


id: PBO:0064283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain containing N1","termid":"PBO:0064283"}


id: GO:1905455
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of myeloid progenitor cell differentiation.","definition_xrefs":["PMID:27010503","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of hematopoietic progenitor cell differentiation","termid":"GO:1901534"},{"relation_name":"is_a","term_name":"regulation of myeloid progenitor cell differentiation","termid":"GO:1905453"},{"relation_name":"positively_regulates","term_name":"myeloid progenitor cell differentiation","termid":"GO:0002318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myeloid progenitor cell differentiation","synonyms":[{"name":"activation of myeloid progenitor cell differentiation","type":"narrow"},{"name":"up regulation of myeloid progenitor cell differentiation","type":"exact"},{"name":"up-regulation of myeloid progenitor cell differentiation","type":"exact"},{"name":"upregulation of myeloid progenitor cell differentiation","type":"exact"}],"termid":"GO:1905455"}


id: PBO:0091167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome-c reductase complex, Reiske ISP-associated subunit Qcr10","termid":"PBO:0091167"}


id: PBO:0059821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metadherin pseudogene 1","termid":"PBO:0059821"}


id: PBO:0039167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A-kinase anchor inhibitor 1","termid":"PBO:0039167"}


id: PBO:0088061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; involved in K29-linked ubiquitin-dependent protein catabolism, including ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0088061"}


id: PBO:0069869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1156, pseudogene","termid":"PBO:0069869"}


id: PBO:0004485
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.5.1.10","termid":"PBO:0004485"}


id: SO:0001139
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Gamma turns, defined for 3 residues i, i+1, i+2 if a hydrogen bond exists between residues i and i+2 and the phi and psi angles of residue i+1 fall within 40 degrees: phi(i+1)=75.0 - psi(i+1)=-64.0.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gamma_turn","termid":"SO:0001138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"gamma_turn_classic","secondary_identifiers":["BS:00220"],"synonyms":[{"name":"classic gamma turn","type":"exact"},{"name":"gamma turn classic","type":"exact"}],"termid":"SO:0001139"}


id: SO:0000561
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Seven nucleotide recombination site (e.g. CACAGTG), part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immune_system_gene_recombination_signal_feature","termid":"SO:0000939"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heptamer_of_recombination_feature_of_vertebrate_immune_system_gene","synonyms":[{"name":"HEPTAMER","type":"related"},{"name":"heptamer of recombination feature of vertebrate immune system gene","type":"exact"}],"termid":"SO:0000561"}


id: PBO:0002404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-OG-Fe(II) oxygenase superfamily protein","termid":"PBO:0002404"}


id: PBO:0086034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function, essential for stationary phase survival; not required for growth on nonfermentable carbon sources; possibly linked with vacuolar transport","termid":"PBO:0086034"}


id: GO:1903125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A peptidyl-threonine phosphorylation that results in negative regulation of thioredoxin peroxidase activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000063","PMID:21850687","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-threonine phosphorylation","termid":"GO:0018107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of thioredoxin peroxidase activity by peptidyl-threonine phosphorylation","synonyms":[{"name":"negative regulation of TPx activity by peptidyl-threonine phosphorylation","type":"exact"},{"name":"negative regulation of TrxPx activity by peptidyl-threonine phosphorylation","type":"exact"},{"name":"negative regulation of thiol peroxidase activity by peptidyl-threonine phosphorylation","type":"exact"}],"termid":"GO:1903125"}


id: PBO:0013077
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement E. coli hisB","termid":"PBO:0013077"}


id: GO:0000913
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the preprophase band, a dense band of microtubules that marks the position in the cell where cytokinesis will occur in cells that perform cytokinesis by cell plate formation.","definition_xrefs":["GOC:clt","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"part_of","term_name":"cytokinesis by cell plate formation","termid":"GO:0000911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0044085"],"is_obsolete":false,"name":"preprophase band assembly","synonyms":[{"name":"preprophase band formation","type":"related"}],"termid":"GO:0000913"}


id: PBO:0044133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTBP1 divergent transcript","termid":"PBO:0044133"}


id: PBO:0056670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 28 pseudogene 8","termid":"PBO:0056670"}


id: PBO:0068023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 328","termid":"PBO:0068023"}


id: PBO:0084865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the small subunit; essential for viability, unlike most other mitoribosomal proteins","termid":"PBO:0084865"}


id: MOD:00033
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two or more amino acid residues with covalent bonds.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by chemical process","termid":"MOD:01156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked residues","synonyms":[{"name":"XLNK-Res-Res","type":"exact"}],"termid":"MOD:00033"}


id: PBO:0005188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"switch-activating protein Sap1","termid":"PBO:0005188"}


id: GO:0061672
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Enzyme complex that in S. cerevisiae has components Dug2/Dug3 and is able to catalyze the cleavage of glutathione into glutamate and Cys-Gly.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidase complex","termid":"GO:1905368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"glutathione hydrolase complex","synonyms":[{"name":"gamma-glutamyltranspeptidase complex","type":"exact"},{"name":"glutamine amidotransferase II complex","type":"narrow"},{"name":"glutathionase complex","type":"exact"}],"termid":"GO:0061672"}


id: GO:0032203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the formation of a telomere at a non-telomeric double-stranded DNA end that involves the activity of a telomerase enzyme.","definition_xrefs":["GOC:ns","PMID:11902675","PMID:8622671","GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomere assembly","termid":"GO:0032202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0032200"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0032200","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"telomere formation via telomerase","termid":"GO:0032203"}


id: PBO:0066983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 286","termid":"PBO:0066983"}


id: PBO:0082197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Allantoicase; converts allantoate to urea and ureidoglycolate in the second step of allantoin degradation; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation","termid":"PBO:0082197"}


id: PBO:0038345
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-is_active_in","termid":"PBO:0038345"}


id: GO:0099176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of retrograde trans-synaptic signaling by a trans-synaptic complex.","definition_xrefs":["GOC:dos","PMID:23209303"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of trans-synaptic signaling","termid":"GO:0099177"},{"relation_name":"regulates","term_name":"retrograde trans-synaptic signaling by trans-synaptic protein complex","termid":"GO:0098942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of retrograde trans-synaptic signaling by trans-synaptic protein complex","synonyms":[{"name":"regulation of trans-synaptic complex mediated retrograde trans-synaptic signaling","type":"related"}],"termid":"GO:0099176"}


id: SO:0001747
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A DNA sequence that in the normal state of the chromosome corresponds to an unfolded, un-complexed stretch of double-stranded DNA.","definition_xrefs":["SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"open_chromatin_region","synonyms":[{"name":"open chromatin region","type":"exact"}],"termid":"SO:0001747"}


id: GO:0106266
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4,6-trihydroxyphenylhexan-1-one + chloride + FADH2 + O2 = (3-chloro-2,4,6-trihydroxyphenyl)hexan-1-one + FAD + H+ + 2 H2O.","definition_xrefs":["PMID:20231486","RHEA:64356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-chloro THPH synthase activity","termid":"GO:0106266"}


id: PBO:0062281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily J member 1 pseudogene","termid":"PBO:0062281"}


id: GO:0047616
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + NADP+ = 2,3-dehydroacyl-CoA + NADPH + H+.","definition_xrefs":["MetaCyc:ACYL-COA-DEHYDROGENASE-NADP+-RXN","EC:1.3.1.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"acyl-CoA dehydrogenase (NADP+) activity","secondary_identifiers":["RHEA:22460"],"synonyms":[{"name":"2-enoyl-CoA reductase activity","type":"related"},{"name":"acyl-CoA:NADP+ 2-oxidoreductase activity","type":"related"},{"name":"crotonyl coenzyme A reductase activity","type":"related"},{"name":"dehydrogenase, acyl coenzyme A (nicotinamide adenine dinucleotide phosphate)","type":"related"},{"name":"enoyl coenzyme A reductase activity","type":"related"}],"termid":"GO:0047616"}


id: MOD:01619
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two cysteine residues by formation of a chain of two or more bonded sulfur atoms.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues","termid":"MOD:00033"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multisulfide crosslinked residues","termid":"MOD:01619"}


id: GO:0038009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of signal transduction by the movement of a signaling receptor from the plasma membrane to the inside of the cell. Receptor internalization can have a positive or negative effect on a signaling pathway.","definition_xrefs":["PMID:19696798","PMID:17011816","GOC:bf","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"is_a","term_name":"receptor internalization","termid":"GO:0031623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0051179","GO:0023052","GO:0006810"],"is_obsolete":false,"name":"regulation of signal transduction by receptor internalization","synonyms":[{"name":"regulation of signaling pathway by receptor endocytosis","type":"exact"}],"termid":"GO:0038009"}


id: PBO:0049760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"host cell factor C2","termid":"PBO:0049760"}


id: GO:0120286
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of tryptophan.","definition_xrefs":["GOC:krc","PMID:31498992"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid sensor activity","termid":"GO:0140785"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140299"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0140299","GO:0098772","GO:0003674"],"is_obsolete":false,"name":"tryptophan sensor activity","synonyms":[{"name":"tryptophan sensing activity","type":"exact"}],"termid":"GO:0120286"}


id: PBO:0068350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 126 pseudogene 1","termid":"PBO:0068350"}


id: PBO:0061297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuropeptides B and W receptor 2","termid":"PBO:0061297"}


id: PBO:0081159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFPM2 antisense RNA 1","termid":"PBO:0081159"}


id: GO:0030165
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a PDZ domain of a protein, a domain found in diverse signaling proteins.","definition_xrefs":["Pfam:PF00595","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"PDZ domain binding","synonyms":[{"name":"DHR-domain binding","type":"exact"},{"name":"GLGF-domain binding","type":"exact"}],"termid":"GO:0030165"}


id: PBO:0060485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nanog homeobox pseudogene 7","termid":"PBO:0060485"}


id: SO:0002248
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of DNA that is predicted to be translated and transcribed into a protein by a protein detection algorithm that does not get transcribed in nature.","definition_xrefs":["PMID:21771858"],"direct_ancestors":[{"relation_name":"is_a","term_name":"experimental_feature","termid":"SO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spurious_protein","synonyms":[{"name":"spurious protein","type":"exact"}],"termid":"SO:0002248"}


id: PBO:0081082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZDHHC12 divergent transcript","termid":"PBO:0081082"}


id: PBO:0036428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delta-1-pyrroline-5-carboxylate dehydrogenase Put2 (predicted)","termid":"PBO:0036428"}


id: GO:0010919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of inositol phosphate biosynthesis. Inositol phosphate biosynthetic processes are the chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphate metabolic process","termid":"GO:0019220"},{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of carbohydrate biosynthetic process","termid":"GO:0043255"},{"relation_name":"is_a","term_name":"regulation of alcohol biosynthetic process","termid":"GO:1902930"},{"relation_name":"regulates","term_name":"inositol phosphate biosynthetic process","termid":"GO:0032958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of inositol phosphate biosynthetic process","synonyms":[{"name":"regulation of inositol phosphate biosynthesis","type":"exact"}],"termid":"GO:0010919"}


id: PBO:0075760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/arginine repetitive matrix 1 pseudogene 2","termid":"PBO:0075760"}


id: PBO:0073382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET binding protein 1","termid":"PBO:0073382"}


id: PBO:0067384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 488, pseudogene","termid":"PBO:0067384"}


id: PBO:0073793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 6 member 1","termid":"PBO:0073793"}


id: PBO:0048859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOLGA2 pseudogene 4","termid":"PBO:0048859"}


id: PBO:0054891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2305","termid":"PBO:0054891"}


id: GO:0071238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brefeldin A stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to brefeldin A","termid":"GO:0031001"},{"relation_name":"is_a","term_name":"cellular response to antibiotic","termid":"GO:0071236"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to brefeldin A","termid":"GO:0071238"}


id: GO:0052452
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the innate immune response of the symbiont organism; the innate immune response is the symbiont's first line of defense against infection. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of symbiont innate immunity (obsolete GO:0052452)","synonyms":[{"name":"modulation by organism of symbiont innate immunity","type":"exact"},{"name":"modulation of symbiont innate immune response","type":"exact"}],"termid":"GO:0052452"}


id: GO:0010569
data:
  {"annotated_genes":["SJAG_01205"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105459],"is_not":false,"summary":null,"term":"GO:0010569"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences.","definition_xrefs":["GOC:tb","GOC:jp","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA recombination","termid":"GO:0000018"},{"relation_name":"is_a","term_name":"regulation of double-strand break repair","termid":"GO:2000779"},{"relation_name":"regulates","term_name":"double-strand break repair via homologous recombination","termid":"GO:0000724"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01205":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"regulates","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0008150","GO:0006310","GO:0006259","GO:0006281"],"is_obsolete":false,"name":"regulation of double-strand break repair via homologous recombination","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010569","terms_by_termid":{"GO:0010569":null}}


id: PBO:0057626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1200","termid":"PBO:0057626"}


id: PBO:0050796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HTR5A antisense RNA 1","termid":"PBO:0050796"}


id: PBO:0045762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enoyl-CoA hydratase domain containing 2","termid":"PBO:0045762"}


id: GO:0033994
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (1->4)-beta-D-glucuronan = an oligosaccharide with 4-deoxy-beta-D-gluc-4-enuronosyl end + (1->4)-beta-D-glucuronan. This reaction is the eliminative cleavage of (1->4)-beta-D-glucuronans to give oligosaccharides with 4-deoxy-beta-D-gluc-4-enuronosyl groups at their non-reducing ends. Complete degradation of glucuronans results in the formation of tetrasaccharides.","definition_xrefs":["EC:4.2.2.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"glucuronan lyase activity","secondary_identifiers":["MetaCyc:4.2.2.14-RXN"],"synonyms":[{"name":"(1,4)-beta-D-glucuronan lyase activity","type":"related"}],"termid":"GO:0033994"}


id: GO:0046264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of thiocyanate, any anion or salt of thiocyanic acid.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete thiocyanate biosynthetic process (obsolete GO:0046264)","synonyms":[{"name":"thiocyanate anabolism","type":"exact"},{"name":"thiocyanate biosynthesis","type":"exact"},{"name":"thiocyanate biosynthetic process","type":"exact"},{"name":"thiocyanate formation","type":"exact"},{"name":"thiocyanate synthesis","type":"exact"}],"termid":"GO:0046264"}


id: PBO:0081777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 705E, pseudogene","termid":"PBO:0081777"}


id: PBO:0034482
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_polarity","termid":"PBO:0034482"}


id: GO:0003300
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The enlargement or overgrowth of all or part of the heart muscle due to an increase in size of cardiac muscle cells without cell division.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle hypertrophy","termid":"GO:0014897"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle hypertrophy","termid":"GO:0003300"}


id: PBO:0040848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLOC1S2 pseudogene 1","termid":"PBO:0040848"}


id: GO:0035762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the dorsal motor nucleus of the vagus nerve is generated and organized. Morphogenesis pertains to the creation of form.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"dorsal motor nucleus of vagus nerve development","termid":"GO:0021744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal motor nucleus of vagus nerve morphogenesis","termid":"GO:0035762"}


id: GO:0015743
data:
  {"annotated_genes":["SJAG_02140","SJAG_01406","SJAG_02011"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91072],"is_not":false,"summary":null,"term":"GO:0015743"},{"annotations":[97745],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098714"},{"annotations":[114636],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071423"}]},"cv_name":"biological_process","definition":"The directed movement of malate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C4-dicarboxylate transport","termid":"GO:0015740"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01406":null,"SJAG_02011":null,"SJAG_02140":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"malate transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial alpha-ketoglutarate/malate transport","type":"related"}],"termid":"GO:0015743","terms_by_termid":{"GO:0015743":null,"GO:0071423":null,"GO:0098714":null}}


id: PBO:0004112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic thiouridylase subunit Ctu1","termid":"PBO:0004112"}


id: GO:2000777
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any positive regulation of proteasomal ubiquitin-dependent protein catabolic process that is involved in a cellular response to hypoxia.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of proteasomal ubiquitin-dependent protein catabolic process","termid":"GO:0032436"},{"relation_name":"part_of","term_name":"cellular response to hypoxia","termid":"GO:0071456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0030163"},{"rel_name":"regulates","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia","synonyms":[{"name":"positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxic stress","type":"exact"},{"name":"positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to lowered oxygen tension","type":"exact"}],"termid":"GO:2000777"}


id: PBO:0030985
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_metabolic_process","termid":"PBO:0030985"}


id: MOD:00705
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-valine residue to D-valine.","definition_xrefs":["ChEBI:30016","PubMed:15853325","RESID:AA0200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-valine","synonyms":[{"name":"(R)-2-amino-3-methylbutanoic acid","type":"exact"},{"name":"D-Val","type":"exact"},{"name":"D-valine","type":"exact"},{"name":"MOD_RES D-valine","type":"exact"},{"name":"alpha-amino-beta-methylbutyric acid","type":"exact"},{"name":"alpha-aminoisovaleric acid","type":"exact"}],"termid":"MOD:00705"}


id: PBO:0061876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oocyte secreted protein 1","termid":"PBO:0061876"}


id: PBO:0043658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme Q3, methyltransferase","termid":"PBO:0043658"}


id: GO:1904311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gold(3+) stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:16206274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to gold(3+)","termid":"GO:1904311"}


id: GO:0050821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein stability","termid":"GO:0031647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein stabilization","synonyms":[{"name":"lysosomal protein stabilization","type":"narrow"},{"name":"positive regulation of protein stability","type":"exact"},{"name":"protein sequestering","type":"related"},{"name":"protein stabilisation","type":"exact"},{"name":"protein stabilization activity","type":"related"}],"termid":"GO:0050821"}


id: PBO:0038343
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_eggs_laid_on_by","termid":"PBO:0038343"}


id: PBO:0108624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Cox1101/ mitochondrial ribosome assembly protein Rsm22 fusion protein","termid":"PBO:0108624"}


id: PBO:0027862
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_DNA_replication_during_cellular_response_to_DNA_damage","termid":"PBO:0027862"}


id: SO:0001669
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The minimal portion of the promoter required to properly initiate transcription in RNA polymerase II transcribed genes.","definition_xrefs":["PMID:16858867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNApol_II_core_promoter","synonyms":[{"name":"RNApol II core promoter","type":"exact"}],"termid":"SO:0001669"}


id: GO:1900673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving olefin.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrocarbon metabolic process","termid":"GO:0120252"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olefin metabolic process","synonyms":[{"name":"olefin metabolism","type":"exact"}],"termid":"GO:1900673"}


id: PBO:0059207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylthioribose-1-phosphate isomerase 1","termid":"PBO:0059207"}


id: PBO:0114381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane carboxylic acid transmembrane transporter","termid":"PBO:0114381"}


id: PBO:0071177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 18","termid":"PBO:0071177"}


id: GO:0044128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont activates, maintains or increases its size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction.","definition_xrefs":["GOC:jl","GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of growth of symbiont in host (obsolete GO:0044128)","termid":"GO:0044128"}


id: GO:1902774
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances from late endosome to lysosome.","definition_xrefs":["PMID:23949442","GOC:TermGenie","GO_REF:0000076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal transport","termid":"GO:0007041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"late endosome to lysosome transport","synonyms":[{"name":"prevacuolar compartment to lysosome transport","type":"broad"}],"termid":"GO:1902774"}


id: PBO:0030477
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_serine_level","termid":"PBO:0030477"}


id: PR:O43091
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A decaprenyl-diphosphate synthase subunit 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02552"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decaprenyl-diphosphate synthase subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPJ4664.01","secondary_identifiers":["UniProtKB:O43091"],"synonyms":[{"name":"Spom972h-PDSS1","type":"exact"},{"name":"all-trans-decaprenyl-diphosphate synthase subunit 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"decaprenyl pyrophosphate synthase subunit 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O43091"}


id: PR:Q9UUD9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC17G9.13c gene.","definition_xrefs":["UniProtKB:Q9UUD9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17G9.13c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17G9.13c","synonyms":[{"name":"Spom972h-SPBC17G9.13c","type":"exact"}],"termid":"PR:Q9UUD9"}


id: PBO:0004107
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"region specific activator of recombination","termid":"PBO:0004107"}


id: FYPO:0003352
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A DNA recombination phenotype observed in the vegetative growth phase of the life cycle in which DNA double-strand break formation occurs to a lower extent than normal during gene conversion at the mating-type locus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"decreased mating type switching","termid":"FYPO:0000470"},{"relation_name":"is_a","term_name":"abnormal DNA recombination during vegetative growth","termid":"FYPO:0001345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000293","FYPO:0000002"],"is_obsolete":false,"name":"decreased DNA double-strand break formation at mating-type locus","synonyms":[{"name":"decreased DNA double-strand break formation at mating-type locus during gene conversion","type":"exact"},{"name":"decreased DNA double-strand break formation at mating-type locus during mitotic cell cycle","type":"related"},{"name":"decreased DNA double-strand break formation at mating-type locus during vegetative growth","type":"exact"},{"name":"decreased DNA double-strand break formation during gene conversion at mating-type locus","type":"exact"},{"name":"decreased DSB formation at mat1","type":"exact"},{"name":"decreased DSB formation at mating-type locus","type":"exact"},{"name":"decreased DSB formation proximal to mat1","type":"exact"},{"name":"decreased gene conversion at mating-type locus, DNA double-strand break formation","type":"exact"},{"name":"reduced DNA double-strand break formation at mating-type locus","type":"exact"}],"termid":"FYPO:0003352"}


id: PBO:0064350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLXNB3 antisense RNA 1","termid":"PBO:0064350"}


id: GO:1903677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cap-independent translational initiation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic translational initiation","termid":"GO:1904688"},{"relation_name":"regulates","term_name":"cap-independent translational initiation","termid":"GO:0002190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0002181"}],"interesting_parent_ids":["GO:0010467","GO:0002181","GO:0008150"],"is_obsolete":false,"name":"regulation of cap-independent translational initiation","termid":"GO:1903677"}


id: GO:0045588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of gamma-delta T cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell differentiation","termid":"GO:0045582"},{"relation_name":"is_a","term_name":"regulation of gamma-delta T cell differentiation","termid":"GO:0045586"},{"relation_name":"is_a","term_name":"positive regulation of gamma-delta T cell activation","termid":"GO:0046645"},{"relation_name":"positively_regulates","term_name":"gamma-delta T cell differentiation","termid":"GO:0042492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of gamma-delta T cell differentiation","synonyms":[{"name":"activation of gamma-delta T cell differentiation","type":"narrow"},{"name":"positive regulation of gamma-delta T cell development","type":"related"},{"name":"positive regulation of gamma-delta T lymphocyte differentiation","type":"exact"},{"name":"positive regulation of gamma-delta T-cell differentiation","type":"exact"},{"name":"positive regulation of gamma-delta T-lymphocyte differentiation","type":"exact"},{"name":"stimulation of gamma-delta T cell differentiation","type":"narrow"},{"name":"up regulation of gamma-delta T cell differentiation","type":"exact"},{"name":"up-regulation of gamma-delta T cell differentiation","type":"exact"},{"name":"upregulation of gamma-delta T cell differentiation","type":"exact"}],"termid":"GO:0045588"}


id: GO:0100047
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates inositol biosynthetic process.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100047)","termid":"GO:0100047"}


id: GO:0051597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to methylmercury","synonyms":[{"name":"response to CH3-Hg+","type":"exact"},{"name":"response to MeHg+","type":"exact"}],"termid":"GO:0051597"}


id: PBO:0071376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30","termid":"PBO:0071376"}


id: PBO:0084245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Inner plaque spindle pole body (SPB) component; gamma-tubulin small complex (gamma-TuSC) receptor that interacts with Spc98p to recruit the complex to the nuclear side of the SPB, connecting nuclear microtubules to the SPB; promotes gamma-TuSC assembly and oligomerization to initiate microtubule nucleation; interacts with Tub4p-complex and calmodulin; phosphorylated by Mps1p in cell cycle-dependent manner; ortholog of human pericentrin (kendrin)","termid":"PBO:0084245"}


id: PBO:0040669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCAN antisense RNA 1","termid":"PBO:0040669"}


id: GO:0140115
data:
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id: PBO:0089257
data:
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id: GO:0008517
data:
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id: PBO:0051590
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id: GO:0052356
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id: GO:0004709
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id: PBO:0087490
data:
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id: GO:0009056
data:
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id: PBO:0060689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-deacetylase and N-sulfotransferase 4","termid":"PBO:0060689"}


id: GO:1902546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of DNA N-glycosylase activity.","definition_xrefs":["GOC:rph","GOC:TermGenie","PMID:15518571"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of DNA N-glycosylase activity (obsolete GO:1902546)","synonyms":[{"name":"activation of DNA N-glycosylase activity","type":"narrow"},{"name":"activation of DNA glycosylase activity","type":"narrow"},{"name":"activation of endonuclease VIII activity","type":"related"},{"name":"positive regulation of DNA glycosylase activity","type":"exact"},{"name":"positive regulation of endonuclease VIII activity","type":"related"},{"name":"up regulation of DNA N-glycosylase activity","type":"exact"},{"name":"up regulation of DNA glycosylase activity","type":"exact"},{"name":"up regulation of endonuclease VIII activity","type":"related"},{"name":"up-regulation of DNA N-glycosylase activity","type":"exact"},{"name":"up-regulation of DNA glycosylase activity","type":"exact"},{"name":"up-regulation of endonuclease VIII activity","type":"related"},{"name":"upregulation of DNA N-glycosylase activity","type":"exact"},{"name":"upregulation of DNA glycosylase activity","type":"exact"},{"name":"upregulation of endonuclease VIII activity","type":"related"}],"termid":"GO:1902546"}


id: _global:assayed_enzyme
data:
  {"annotation_feature_type":"gene","cv_name":"fypo_extension_relations","definition":"Relation between a catalytic activity phenotype and an enzyme, usually a gene product, with which the phenotype was assayed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assayed_using","termid":"_global:assayed_using"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assayed_enzyme","termid":"_global:assayed_enzyme"}


id: GO:0005744
data:
  {"annotated_genes":["SJAG_00373","SJAG_01879","SJAG_04014","SJAG_04218","SJAG_01120","SJAG_04432","SJAG_01597","SJAG_01615","SJAG_01442","SJAG_02077","SJAG_03560"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[92952,98800,101305,103644,111400],"is_not":false,"summary":null,"term":"GO:0005744"},{"annotations":[106017,107956,85569,96405,99393,95326],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0001405"}]},"cv_name":"cellular_component","definition":"The protein transport machinery of the mitochondrial inner membrane that typically transports proteins that possess a matrix-targeting N-terminal presequence. The TIM23 complex contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor.","definition_xrefs":["PMID:27554484","PMID:8851659"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner mitochondrial membrane protein complex","termid":"GO:0098800"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00373":null,"SJAG_01120":null,"SJAG_01442":null,"SJAG_01597":null,"SJAG_01615":null,"SJAG_01879":null,"SJAG_02077":null,"SJAG_03560":null,"SJAG_04014":null,"SJAG_04218":null,"SJAG_04432":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005739"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991","GO:0005739"],"is_obsolete":false,"name":"TIM23 mitochondrial import inner membrane translocase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Tim23 complex","type":"exact"},{"name":"mitochondrial inner membrane pre-sequence translocase complex","type":"exact"},{"name":"mitochondrial inner membrane presequence translocase complex","type":"exact"},{"name":"mitochondrial inner membrane translocase complex","type":"broad"}],"termid":"GO:0005744","terms_by_termid":{"GO:0001405":null,"GO:0005744":null}}


id: MOD:01116
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-farnesyl-L-cysteine methyl ester.","definition_xrefs":["RESID:AA0105#var","PubMed:15609361","RESID:AA0102#var"],"direct_ancestors":[{"relation_name":"has_functional_parent","term_name":"S-farnesyl-L-cysteine","termid":"MOD:00111"},{"relation_name":"has_functional_parent","term_name":"L-cysteine methyl ester","termid":"MOD:00114"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-farnesyl-L-cysteine methyl ester","synonyms":[{"name":"SFarnOMeCys","type":"exact"}],"termid":"MOD:01116"}


id: PR:G2TRU3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCPB16A4.07 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRU3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein PB16A4.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCPB16A4.07","synonyms":[{"name":"Spom972h-SPCPB16A4.07","type":"exact"}],"termid":"PR:G2TRU3"}


id: PBO:0091680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small non-coding RNA, late meiosis specific","termid":"PBO:0091680"}


id: GO:0010288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus.","definition_xrefs":["GOC:tair_curators","PMID:16461380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to lead ion","termid":"GO:0010288"}


id: PBO:0047172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 197 Y-linked member 5","termid":"PBO:0047172"}


id: PBO:0076729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcobalamin 2","termid":"PBO:0076729"}


id: PR:Q09699
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- snf5 gene.","definition_xrefs":["UniProtKB:Q09699","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF chromatin-remodeling complex subunit snf5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F7.08c","synonyms":[{"name":"SWI/SNF complex subunit snf5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-snf5","type":"exact"}],"termid":"PR:Q09699"}


id: PBO:0039355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amidohydrolase domain containing 1","termid":"PBO:0039355"}


id: PATO:0002125
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's consisting a knot-like mass.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nodular","termid":"PATO:0002125"}


id: PBO:0060755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B3 pseudogene 5","termid":"PBO:0060755"}


id: GO:0004827
data:
  {"annotated_genes":["SJAG_02236","SJAG_01259"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102046,103249],"is_not":false,"summary":null,"term":"GO:0004827"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro).","definition_xrefs":["EC:6.1.1.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01259":null,"SJAG_02236":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0003674","GO:0140101","GO:0016874","GO:0003824","GO:0140098"],"is_obsolete":false,"name":"proline-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:14305","MetaCyc:PROLINE--TRNA-LIGASE-RXN","Reactome:R-HSA-379865","Reactome:R-HSA-380198"],"synonyms":[{"name":"L-proline:tRNAPro ligase (AMP-forming)","type":"related"},{"name":"proline translase activity","type":"related"},{"name":"prolinyl-tRNA ligase activity","type":"related"},{"name":"prolyl-s-RNA synthetase activity","type":"related"},{"name":"prolyl-tRNA synthetase activity","type":"exact"},{"name":"prolyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"prolyl-transfer ribonucleic acid synthetase activity","type":"related"},{"name":"prolyl-transferRNA synthetase activity","type":"related"}],"termid":"GO:0004827","terms_by_termid":{"GO:0004827":null}}


id: PBO:0061139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NME2 pseudogene 3","termid":"PBO:0061139"}


id: PR:000037082
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tropomyosin cdc8 (Schizosaccharomyces pombe) that has not been post-translationally modified to include an acetylated N-terminal methionine.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tropomyosin cdc8 (Schizosaccharomyces pombe)","termid":"PR:000027986"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cdc8/UnMod(M1)","pombase_gene_id":"SPAC27F1.02c","synonyms":[{"name":"PomBase_original_PRO_term_name: tropomyosin cdc8, non-acetylated form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-cdc8/AcRes-","type":"exact"},{"name":"cdc8/UnMod(M1)","type":"exact"}],"termid":"PR:000037082"}


id: PBO:0057314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 518a-2","termid":"PBO:0057314"}


id: PBO:0085454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Posttranscriptional regulator of phosphate and glucose metabolism; facilitates PHO4 mRNA degradation by interacting with Pop2p; regulates PHO4 mRNA stability by binding to PHO4's 3'UTR in a phosphate-dependent manner; contains highly conserved YTH (YT521-B Homology) domain that exhibits RNA-binding activity; human homolog YTHDF2 can complement yeast null mutant","termid":"PBO:0085454"}


id: PATO:0001112
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001112 energy value (obsolete PATO:0001112)","termid":"PATO:0001112"}


id: FYPO:0005301
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more cell cycle-regulated mRNAs measured in a cell is higher than normal (i.e. higher than observed in wild-type cells). Cell cycle-regulated mRNAs are transcribed from genes whose level of transcription varies depending on cell cycle phase.","definition_xrefs":["PomBase:mah","PMID:26697368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"increased level of cell cycle regulated gene mRNA during vegetative growth","synonyms":[{"name":"increased cell cycle regulated gene mRNA accumulation during vegetative growth","type":"related"},{"name":"increased level of cell cycle regulated gene RNA during vegetative growth","type":"exact"},{"name":"increased level of cell cycle regulated gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of cell cycle regulated gene transcripts during vegetative growth","type":"exact"},{"name":"increased level of cell cycle-regulated gene mRNA during vegetative growth","type":"exact"}],"termid":"FYPO:0005301"}


id: CHEBI:17326
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoside triphosphate","termid":"CHEBI:17326"}


id: GO:1900647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of chanoclavine-I aldehyde biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular biosynthetic process","termid":"GO:0031327"},{"relation_name":"is_a","term_name":"regulation of chanoclavine-I aldehyde biosynthetic process","termid":"GO:1900646"},{"relation_name":"is_a","term_name":"negative regulation of ergot alkaloid biosynthetic process","termid":"GO:1900823"},{"relation_name":"negatively_regulates","term_name":"chanoclavine-I aldehyde biosynthetic process","termid":"GO:1900569"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"negative regulation of chanoclavine-I aldehyde biosynthetic process","synonyms":[{"name":"down regulation of chanoclavine-I aldehyde anabolism","type":"exact"},{"name":"down regulation of chanoclavine-I aldehyde biosynthesis","type":"exact"},{"name":"down regulation of chanoclavine-I aldehyde biosynthetic process","type":"exact"},{"name":"down regulation of chanoclavine-I aldehyde formation","type":"exact"},{"name":"down regulation of chanoclavine-I aldehyde synthesis","type":"exact"},{"name":"down-regulation of chanoclavine-I aldehyde anabolism","type":"exact"},{"name":"down-regulation of chanoclavine-I aldehyde biosynthesis","type":"exact"},{"name":"down-regulation of chanoclavine-I aldehyde biosynthetic process","type":"exact"},{"name":"down-regulation of chanoclavine-I aldehyde formation","type":"exact"},{"name":"down-regulation of chanoclavine-I aldehyde synthesis","type":"exact"},{"name":"downregulation of chanoclavine-I aldehyde anabolism","type":"exact"},{"name":"downregulation of chanoclavine-I aldehyde biosynthesis","type":"exact"},{"name":"downregulation of chanoclavine-I aldehyde biosynthetic process","type":"exact"},{"name":"downregulation of chanoclavine-I aldehyde formation","type":"exact"},{"name":"downregulation of chanoclavine-I aldehyde synthesis","type":"exact"},{"name":"inhibition of chanoclavine-I aldehyde anabolism","type":"exact"},{"name":"inhibition of chanoclavine-I aldehyde biosynthesis","type":"exact"},{"name":"inhibition of chanoclavine-I aldehyde biosynthetic process","type":"narrow"},{"name":"inhibition of chanoclavine-I aldehyde formation","type":"exact"},{"name":"inhibition of chanoclavine-I aldehyde synthesis","type":"exact"},{"name":"negative regulation of chanoclavine-I aldehyde anabolism","type":"exact"},{"name":"negative regulation of chanoclavine-I aldehyde biosynthesis","type":"exact"},{"name":"negative regulation of chanoclavine-I aldehyde formation","type":"exact"},{"name":"negative regulation of chanoclavine-I aldehyde synthesis","type":"exact"}],"termid":"GO:1900647"}


id: GO:1904963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phytol biosynthetic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24275650"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of isoprenoid metabolic process","termid":"GO:0019747"},{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of lipid biosynthetic process","termid":"GO:0046890"},{"relation_name":"is_a","term_name":"regulation of alcohol biosynthetic process","termid":"GO:1902930"},{"relation_name":"regulates","term_name":"phytol biosynthetic process","termid":"GO:0033520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"regulation of phytol biosynthetic process","synonyms":[{"name":"regulation of phytol anabolism","type":"exact"},{"name":"regulation of phytol biosynthesis","type":"exact"},{"name":"regulation of phytol formation","type":"exact"},{"name":"regulation of phytol synthesis","type":"exact"}],"termid":"GO:1904963"}


id: PBO:0003056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione-dependent formaldehyde dehydrogenase (predicted)","termid":"PBO:0003056"}


id: GO:0075068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's vascular tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete growth or development of symbiont in host vascular tissue (obsolete GO:0075068)","synonyms":[{"name":"growth or development of symbiont in host vascular tissue","type":"exact"}],"termid":"GO:0075068"}


id: GO:0043821
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: succinate + propionyl-CoA = succinyl-CoA + propionate.","definition_xrefs":["PMID:10769117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0016782","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"propionyl-CoA:succinate CoA-transferase activity","secondary_identifiers":["MetaCyc:RXN0-268","RHEA:28010"],"synonyms":[{"name":"propionyl-CoA succinate CoA-transferase activity","type":"exact"},{"name":"propionyl-CoA:succinate CoA transferase activity","type":"exact"}],"termid":"GO:0043821"}


id: PBO:0083762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential kinetochore protein; component of the CBF3 multisubunit complex that binds to the CDEIII region of the centromere; Cbf2p also binds to the CDEII region possibly forming a different multimeric complex, ubiquitinated in vivo; sumoylated in an Mms21p-dependent manner; relative distribution to the spindle pole body decreases upon DNA replication stress","termid":"PBO:0083762"}


id: MOD:01054
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-toluenesulfonyl","synonyms":[{"name":"4-toluenesulphonyl","type":"exact"},{"name":"Tos","type":"exact"},{"name":"Tosyl","type":"exact"}],"termid":"MOD:01054"}


id: GO:0019182
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the energy-independent facilitated diffusion of a chloride ion through a transmembrane channel that opens when bound to histamine.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloride channel activity","termid":"GO:0005254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"histamine-gated chloride channel activity","termid":"GO:0019182"}


id: PR:O74455
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 6-phosphogluconolactonase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04412","PANTHER:PTHR11054:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphogluconolactonase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.10","secondary_identifiers":["UniProtKB:O74455"],"synonyms":[{"name":"6PGL (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PGLS","type":"exact"}],"termid":"PR:O74455"}


id: GO:0047876
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + oligoglycosylglucosylceramide = ceramide + oligoglycosylglucose.","definition_xrefs":["EC:3.2.1.123","MetaCyc:ENDOGLYCOSYLCERAMIDASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016798"],"is_obsolete":false,"name":"endoglycosylceramidase activity","secondary_identifiers":["RHEA:22288"],"synonyms":[{"name":"EGCase activity","type":"related"},{"name":"endo-glucosylceramidase activity","type":"related"},{"name":"endoglycoceramidase activity","type":"related"},{"name":"glycosyl-N-acetyl-sphingosine 1,1-beta-D-glucanohydrolase activity","type":"related"},{"name":"oligoglycosylglucosylceramide glycohydrolase activity","type":"related"}],"termid":"GO:0047876"}


id: GO:0018153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of an isopeptide cross-link between peptidyl-lysine and peptidyl-glutamine to produce N6-(L-isoglutamyl)-L-lysine.","definition_xrefs":["RESID:AA0124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-glutamine modification","termid":"GO:0018199"},{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"},{"relation_name":"is_a","term_name":"isopeptide cross-linking","termid":"GO:0018262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine","termid":"GO:0018153"}


id: GO:0097168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of mesenchymal stem cells, resulting in the expansion of a stem cell population. A mesenchymal stem cell, or MSC, is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized mesenchymal cells.","definition_xrefs":["GOC:yaf","PMID:20626275","CL:0000134"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stem cell proliferation","termid":"GO:0072089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal stem cell proliferation","synonyms":[{"name":"MSC proliferation","type":"exact"}],"termid":"GO:0097168"}


id: PBO:0076519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 22 pseudogene","termid":"PBO:0076519"}


id: PBO:0074322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCA4 interacting SWI/SNF chromatin remodeling complex scaffold lncRNA","termid":"PBO:0074322"}


id: PBO:0088535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin-A, F-box protein Pof4","termid":"PBO:0088535"}


id: PBO:0071762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 9","termid":"PBO:0071762"}


id: PBO:0012046
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"processive helicase activity of Mcm4/6/7 complex requires 3' and 5' overhangs","termid":"PBO:0012046"}


id: PBO:0091188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 2","termid":"PBO:0091188"}


id: GO:0043366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which successful recombination of a T cell receptor beta chain into a translatable protein coding sequence leads to rescue from apoptosis and subsequent proliferation of an immature T cell.","definition_xrefs":["ISBN:0781735149","PMID:12220932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell selection","termid":"GO:0045058"},{"relation_name":"part_of","term_name":"alpha-beta T cell differentiation","termid":"GO:0046632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"beta selection","termid":"GO:0043366"}


id: FYPO:0006001
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to P-bodies does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abolished protein localization to P-bodies","synonyms":[{"name":"abolished protein localisation to P-bodies","type":"exact"},{"name":"abolished protein localization to P-bodies during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to P-bodies during vegetative growth","type":"exact"},{"name":"abolished protein localization to P-body","type":"exact"},{"name":"abolished protein localization to cytoplasmic P-bodies","type":"exact"},{"name":"protein localization to P-bodies abolished","type":"exact"}],"termid":"FYPO:0006001"}


id: GO:0018983
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving Z-phenylacetaldoxime, a member of the glucosinolate group of compounds, a class of natural products that are gaining increasing interest as cancer-preventing agents and crop protectants.","definition_xrefs":["UM-BBD_pathwayID:car"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldoxime metabolic process","termid":"GO:0019330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Z-phenylacetaldoxime metabolic process","secondary_identifiers":["UM-BBD_pathwayID:pao"],"synonyms":[{"name":"Z-phenylacetaldoxime metabolism","type":"exact"}],"termid":"GO:0018983"}


id: PBO:0000381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospho-2-dehydro-3-deoxyheptonate aldolase (predicted)","termid":"PBO:0000381"}


id: GO:0099523
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region of the cytosol consisting of all cytosol that is part of the presynapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytosolic region","termid":"GO:0099522"},{"relation_name":"part_of","term_name":"presynapse","termid":"GO:0098793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005829"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0005829"],"is_obsolete":false,"name":"presynaptic cytosol","termid":"GO:0099523"}


id: PBO:0028977
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_nitrite","termid":"PBO:0028977"}


id: GO:0140460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a Gram-negative bacterium.","definition_xrefs":["PMID:23664307"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to bacterium","termid":"GO:0009617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to Gram-negative bacterium","termid":"GO:0140460"}


id: PR:O59672
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-binding cassette sub-family F member 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized ABC transporter ATP-binding protein C29A3.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.09c","secondary_identifiers":["UniProtKB:O59672"],"synonyms":[{"name":"Spom972h-ABCF3","type":"exact"}],"termid":"PR:O59672"}


id: FYPO:0000589
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the rate, or speed, of ascospore formation is increased, i.e. sporulation takes place more rapidly than in wild type.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sporulation","termid":"FYPO:0000121"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000121"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000121","FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"increased rate of sporulation","synonyms":[{"name":"increased rate of ascospore formation","type":"exact"},{"name":"sporulation: increased rate","type":"related"}],"termid":"FYPO:0000589"}


id: PBO:0051188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3/OR16-6 (pseudogene)","termid":"PBO:0051188"}


id: GO:0097568
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A non-membrane bound, semi-organized microtubule array of unknown function found in Giardia species (trophozoite stage). It is located on the dorsal side of the trophozoite, slightly posterior to the ventral disc.","definition_xrefs":["GOC:giardia","PMID:5961344"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cytoskeleton","termid":"GO:0005856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"median body","synonyms":[{"name":"parabasal body","type":"related"}],"termid":"GO:0097568"}


id: PBO:0078138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 17","termid":"PBO:0078138"}


id: GO:0016866
data:
  {"annotated_genes":["SJAG_03360","SJAG_00518","SJAG_02009","SJAG_03572","SJAG_00624","SJAG_01172","SJAG_02978","SJAG_00134","SJAG_00978","SJAG_02783","SJAG_03723","SJAG_00088","SJAG_01209","SJAG_04065","SJAG_00319","SJAG_04754"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[65787],"is_not":false,"summary":null,"term":"GO:0016866"},{"annotations":[91063],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046538"},{"annotations":[85870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004106"},{"annotations":[84769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000250"},{"annotations":[84570,84231],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004610"},{"annotations":[112017,105043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004614"},{"annotations":[91064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004619"},{"annotations":[85238],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004615"},{"annotations":[112018],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008973"},{"annotations":[87233,110464],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009982"},{"annotations":[102354,110466,91410],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106032"},{"annotations":[108646,110467,90708],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106029"},{"annotations":[102355],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160150"},{"annotations":[98601],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160148"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a functional group from one position to another within a single molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isomerase activity","termid":"GO:0016853"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00088":null,"SJAG_00134":null,"SJAG_00319":null,"SJAG_00518":null,"SJAG_00624":null,"SJAG_00978":null,"SJAG_01172":null,"SJAG_01209":null,"SJAG_02009":null,"SJAG_02783":null,"SJAG_02978":null,"SJAG_03360":null,"SJAG_03572":null,"SJAG_03723":null,"SJAG_04065":null,"SJAG_04754":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"intramolecular transferase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"secondary_identifiers":["EC:5.4.-.-"],"synonyms":[{"name":"intramolecular transferase activity, transferring other groups","type":"narrow"},{"name":"mutase activity","type":"exact"}],"termid":"GO:0016866","terms_by_termid":{"GO:0000250":null,"GO:0004106":null,"GO:0004610":null,"GO:0004614":null,"GO:0004615":null,"GO:0004619":null,"GO:0008973":null,"GO:0009982":null,"GO:0016866":null,"GO:0046538":null,"GO:0106029":null,"GO:0106032":null,"GO:0160148":null,"GO:0160150":null}}


id: GO:0052627
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: vanillate + L-glutamate + ATP = N-vanillate-L-glutamate + AMP + diphosphate + H+.","definition_xrefs":["PMID:19189963","MetaCyc:RXN-10885"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"N-vanillate-L-glutamate synthetase activity","synonyms":[{"name":"vanillate amino acid synthetase activity","type":"broad"}],"termid":"GO:0052627"}


id: PBO:0048355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase pseudogene 66","termid":"PBO:0048355"}


id: PBO:0076921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor B2, mitochondrial","termid":"PBO:0076921"}


id: PBO:0027550
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_telomere","termid":"PBO:0027550"}


id: PBO:0048825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit gamma 10 pseudogene 1","termid":"PBO:0048825"}


id: GO:0046352
data:
  {"annotated_genes":["SJAG_04859","SJAG_03824","SJAG_02131","SJAG_04301","SJAG_02949"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97688,97687],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000025"},{"annotations":[96437],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005995"},{"annotations":[112302],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005987"},{"annotations":[107666],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005993"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of disaccharides, sugars composed of two monosaccharide units.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide metabolic process","termid":"GO:0005984"},{"relation_name":"is_a","term_name":"oligosaccharide catabolic process","termid":"GO:0009313"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02131":null,"SJAG_02949":null,"SJAG_03824":null,"SJAG_04301":null,"SJAG_04859":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"disaccharide catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"disaccharide breakdown","type":"exact"},{"name":"disaccharide catabolism","type":"exact"},{"name":"disaccharide degradation","type":"exact"}],"termid":"GO:0046352","terms_by_termid":{"GO:0000025":null,"GO:0005987":null,"GO:0005993":null,"GO:0005995":null}}


id: GO:0047089
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dihydrochelirubine + H+ + NADPH + O2 = 12-hydroxydihydrochelirubine + H2O + NADP+.","definition_xrefs":["EC:1.14.14.101","RHEA:10156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"dihydrochelirubine 12-monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R04708","MetaCyc:1.14.13.57-RXN"],"synonyms":[{"name":"dihydrochelirubine 12-hydroxylase activity","type":"exact"},{"name":"dihydrochelirubine,NADPH:oxygen oxidoreductase (12-hydroxylating)","type":"related"}],"termid":"GO:0047089"}


id: PBO:0082417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bifunctional enzyme of 'de novo' purine nucleotide pathway; contains both phosphoribosylglycinamidine synthetase/glycinamide ribotide synthetase (EC 6.3.4.13) [\"Ade5\"] and phosphoribosylaminoimidazole synthetase/aminoimidazole ribotide synthetase (EC 6.3.3.1) [\"Ade7\"] activities","termid":"PBO:0082417"}


id: GO:0047037
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (7S)-salutaridinol + NADP+ = H+ + NADPH + salutaridine.","definition_xrefs":["EC:1.1.1.248","RHEA:10108"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"salutaridine reductase (NADPH) activity","secondary_identifiers":["KEGG_REACTION:R04697","MetaCyc:1.1.1.248-RXN"],"synonyms":[{"name":"salutaridinol:NADP+ 7-oxidoreductase activity","type":"related"}],"termid":"GO:0047037"}


id: GO:2000336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endothelial microparticle formation.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of blood microparticle formation","termid":"GO:2000333"},{"relation_name":"is_a","term_name":"regulation of endothelial microparticle formation","termid":"GO:2000335"},{"relation_name":"negatively_regulates","term_name":"endothelial microparticle formation","termid":"GO:0072565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of endothelial microparticle formation","synonyms":[{"name":"negative regulation of endothelial microparticle generation","type":"exact"},{"name":"negative regulation of endothelial microparticle release","type":"exact"}],"termid":"GO:2000336"}


id: GO:0030252
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of growth hormone from secretory granules into the blood.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone secretion","termid":"GO:0030072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"growth hormone secretion","synonyms":[{"name":"somatotropin secretion","type":"exact"}],"termid":"GO:0030252"}


id: PBO:0055075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2492","termid":"PBO:0055075"}


id: PBO:0063663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PGAM family member 5, mitochondrial serine/threonine protein phosphatase pseudogene 1","termid":"PBO:0063663"}


id: GO:0032049
data:
  {"annotated_genes":["SJAG_03700","SJAG_00168","SJAG_04317","SJAG_03563"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89068,102329,109184,114041],"is_not":false,"summary":null,"term":"GO:0032049"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cardiolipin, 1,3-bis(3-phosphatidyl)glycerol.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylglycerol biosynthetic process","termid":"GO:0006655"},{"relation_name":"is_a","term_name":"cardiolipin metabolic process","termid":"GO:0032048"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00168":null,"SJAG_03563":null,"SJAG_03700":null,"SJAG_04317":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"cardiolipin biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-5269"],"synonyms":[{"name":"diphosphatidylglycerol biosynthesis","type":"related"},{"name":"diphosphatidylglycerol biosynthetic process","type":"related"}],"termid":"GO:0032049","terms_by_termid":{"GO:0032049":null}}


id: PBO:0063816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHLDA1 divergent transcript","termid":"PBO:0063816"}


id: PBO:0071386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30 pseudogene 9","termid":"PBO:0071386"}


id: PBO:0029892
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_oxaliplatin","termid":"PBO:0029892"}


id: GO:0006179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that generates guanosine, guanine riboside, from derivatives of it without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleoside salvage","termid":"GO:0006166"},{"relation_name":"is_a","term_name":"guanosine biosynthetic process","termid":"GO:0046114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"guanosine salvage","synonyms":[{"name":"guanine, xanthine and their nucleoside salvage","type":"broad"}],"termid":"GO:0006179"}


id: PBO:0088550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial MIM complex subunit Mim1","termid":"PBO:0088550"}


id: PBO:0058579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6516","termid":"PBO:0058579"}


id: PBO:0061426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NQO2 antisense RNA 1","termid":"PBO:0061426"}


id: GO:0043556
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of translation as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translation in response to stress","termid":"GO:0032055"},{"relation_name":"part_of","term_name":"cellular response to oxidative stress","termid":"GO:0034599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of translation in response to oxidative stress","termid":"GO:0043556"}


id: _global:is_active_in
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"c executes activity in d if and only if c enables p and p occurs_in d.  Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.","direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_related_to","termid":"_global:functionally_related_to"},{"relation_name":"is_a","term_name":"overlaps","termid":"_global:overlaps"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_active_in","secondary_identifiers":["RO:0002432"],"synonyms":[{"name":"enables activity in","type":"exact"}],"termid":"_global:is_active_in"}


id: GO:0043964
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by symbiont of host adenylate cyclase-mediated signal transduction (obsolete GO:0043964)","synonyms":[{"name":"positive regulation by symbiont of host adenylate cyclase-mediated signal transduction","type":"exact"}],"termid":"GO:0043964"}


id: PBO:0063891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class P pseudogene 4","termid":"PBO:0063891"}


id: PBO:0047521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"free fatty acid receptor 1","termid":"PBO:0047521"}


id: GO:0071760
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of two identical immunoglobulin heavy chains of the IgY isotype and two identical immunoglobulin light chains, held together by disulfide bonds. An IgY immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.","definition_xrefs":["ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin complex","termid":"GO:0019814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"IgY immunoglobulin complex","termid":"GO:0071760"}


id: PBO:0049131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein regulated inducer of neurite outgrowth 2","termid":"PBO:0049131"}


