# terms

id: GO:1901521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of aspyridone B.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide biosynthetic process","termid":"GO:0030639"},{"relation_name":"is_a","term_name":"pyridine-containing compound biosynthetic process","termid":"GO:0072525"},{"relation_name":"is_a","term_name":"aspyridone B metabolic process","termid":"GO:1901519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"aspyridone B biosynthetic process","synonyms":[{"name":"aspyridone B anabolism","type":"exact"},{"name":"aspyridone B biosynthesis","type":"exact"},{"name":"aspyridone B formation","type":"exact"},{"name":"aspyridone B synthesis","type":"exact"}],"termid":"GO:1901521"}


id: PBO:0054542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1942","termid":"PBO:0054542"}


id: PBO:0063525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDZ domain containing 4","termid":"PBO:0063525"}


id: MOD:00465
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to a dihydroxyphenylalanine.","definition_xrefs":["RESID:AA0146#var","PubMed:1903612","PubMed:1610822","PubMed:3734192","PubMed:9252331","Unimod:425#F","OMSSA:39"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dihydroxylated residue","termid":"MOD:00428"},{"relation_name":"is_a","term_name":"modified L-phenylalanine residue","termid":"MOD:00914"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroxyphenylalanine (Phe)","synonyms":[{"name":"Dioxidation","type":"related"},{"name":"dihydroxy","type":"related"},{"name":"dihydroxyf","type":"exact"}],"termid":"MOD:00465"}


id: GO:0007190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that initiates the activity of the inactive enzyme adenylate cyclase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of adenylate cyclase activity","termid":"GO:0045762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"activation of adenylate cyclase activity","synonyms":[{"name":"adenylate cyclase activation","type":"exact"},{"name":"adenylate cyclase activator","type":"related"},{"name":"adenylyl cyclase activation","type":"exact"}],"termid":"GO:0007190"}


id: GO:0045986
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of smooth muscle contraction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of smooth muscle contraction","termid":"GO:0006940"},{"relation_name":"is_a","term_name":"negative regulation of muscle contraction","termid":"GO:0045932"},{"relation_name":"negatively_regulates","term_name":"smooth muscle contraction","termid":"GO:0006939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of smooth muscle contraction","synonyms":[{"name":"down regulation of smooth muscle contraction","type":"exact"},{"name":"down-regulation of smooth muscle contraction","type":"exact"},{"name":"downregulation of smooth muscle contraction","type":"exact"},{"name":"inhibition of smooth muscle contraction","type":"narrow"},{"name":"smooth muscle relaxation","type":"related"}],"termid":"GO:0045986"}


id: PBO:0072479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 8","termid":"PBO:0072479"}


id: GO:0018765
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2Z,4E)-2-hydroxy-6-oxohepta-2,4-dienoate + H2O = (2Z)-2-hydroxypenta-2,4-dienoate + acetate + H+.","definition_xrefs":["RHEA:59220"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-hydroxy-6-oxohepta-2,4-dienoate hydrolase activity","secondary_identifiers":["UM-BBD_reactionID:r0263","EC:3.7.1.25","MetaCyc:2-OH-6-OXOHEPTA-2-4-DIENOATE-HYDR-RXN"],"termid":"GO:0018765"}


id: PBO:0042868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP97 pseudogene 1","termid":"PBO:0042868"}


id: PBO:0004307
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"target of chaperonin-containing T-complex","termid":"PBO:0004307"}


id: GO:0004310
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete farnesyl-diphosphate farnesyltransferase activity (obsolete GO:0004310)","termid":"GO:0004310"}


id: PBO:0005311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ubiquinone binding protein Coq10","termid":"PBO:0005311"}


id: PBO:0025469
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adult Refsum disease","termid":"PBO:0025469"}


id: PBO:0055142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2561","termid":"PBO:0055142"}


id: PBO:0086685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by SAGE","termid":"PBO:0086685"}


id: PBO:0017465
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-go_annotation_extension_relation","termid":"PBO:0017465"}


id: PBO:0028609
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_urease_activity","termid":"PBO:0028609"}


id: PBO:0070571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 37","termid":"PBO:0070571"}


id: PBO:0072961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretogranin II","termid":"PBO:0072961"}


id: PBO:0089240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle pole body half bridge protein, centrin Cdc31","termid":"PBO:0089240"}


id: PBO:0085299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pheromone-regulated protein, predicted to have 1 transmembrane segment; induced during cell integrity signaling; PRM5 has a paralog, YNL058C, that arose from the whole genome duplication","termid":"PBO:0085299"}


id: GO:0038162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by erythropoietin (EPO) binding to the erythropoietin receptor (EPO-R) on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:nhn","PMID:12489509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to erythropoietin","termid":"GO:0036018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"erythropoietin-mediated signaling pathway","synonyms":[{"name":"EPO-R signaling pathway","type":"exact"},{"name":"erythropoietin receptor signaling pathway","type":"exact"}],"termid":"GO:0038162"}


id: GO:0031465
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ubiquitin ligase complex in which a cullin from the Cul4B subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by unknown subunits.","definition_xrefs":["PMID:15688063","PMID:15571813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Cul4-RING E3 ubiquitin ligase complex","termid":"GO:0080008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Cul4B-RING E3 ubiquitin ligase complex","synonyms":[{"name":"cullin-RING ligase 4B","type":"exact"}],"termid":"GO:0031465"}


id: GO:1901223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of non-canonical NF-kappaB signaling cascade.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of non-canonical NF-kappaB signal transduction","termid":"GO:1901222"},{"relation_name":"is_a","term_name":"negative regulation of intracellular signal transduction","termid":"GO:1902532"},{"relation_name":"negatively_regulates","term_name":"non-canonical NF-kappaB signal transduction","termid":"GO:0038061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of non-canonical NF-kappaB signal transduction","secondary_identifiers":["GO:0042347"],"synonyms":[{"name":"down regulation of NIK/NF-kappaB cascade","type":"exact"},{"name":"down regulation of non-canonical NF-KB signaling","type":"exact"},{"name":"down regulation of noncanonical NF-kappaB signaling","type":"exact"},{"name":"down regulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway","type":"exact"},{"name":"down regulation of p52-dependent NF-kappaB signaling","type":"narrow"},{"name":"down-regulation of NIK/NF-kappaB cascade","type":"exact"},{"name":"down-regulation of non-canonical NF-KB signaling","type":"exact"},{"name":"down-regulation of noncanonical NF-kappaB signaling","type":"exact"},{"name":"down-regulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway","type":"exact"},{"name":"down-regulation of p52-dependent NF-kappaB signaling","type":"narrow"},{"name":"downregulation of NIK/NF-kappaB cascade","type":"exact"},{"name":"downregulation of non-canonical NF-KB signaling","type":"exact"},{"name":"downregulation of noncanonical NF-kappaB signaling","type":"exact"},{"name":"downregulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway","type":"exact"},{"name":"downregulation of p52-dependent NF-kappaB signaling","type":"narrow"},{"name":"inhibition of NIK/NF-kappaB cascade","type":"narrow"},{"name":"inhibition of non-canonical NF-KB signaling","type":"exact"},{"name":"inhibition of noncanonical NF-kappaB signaling","type":"exact"},{"name":"inhibition of noncanonical nuclear factor kappaB (NF-kappaB) pathway","type":"exact"},{"name":"inhibition of p52-dependent NF-kappaB signaling","type":"narrow"},{"name":"negative regulation of NF-kappaB import into nucleus","type":"narrow"},{"name":"negative regulation of NIK/NF-kappaB cascade","type":"exact"},{"name":"negative regulation of NIK/NF-kappaB signaling","type":"exact"},{"name":"negative regulation of non-canonical NF-KB signaling","type":"exact"},{"name":"negative regulation of noncanonical NF-kappaB signaling","type":"exact"},{"name":"negative regulation of noncanonical nuclear factor kappaB (NF-kappaB) pathway","type":"exact"},{"name":"negative regulation of p52-dependent NF-kappaB signaling","type":"narrow"}],"termid":"GO:1901223"}


id: PBO:0066281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein Y-linked family 2 member E, pseudogene","termid":"PBO:0066281"}


id: PBO:0072716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"relaxin family peptide receptor 3","termid":"PBO:0072716"}


id: PBO:0048675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GLCCI1 divergent transcript","termid":"PBO:0048675"}


id: PBO:0082684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the exomer complex; the exomer which also contains Csh6p, Bch1p, Bch2p, and Bud7, is involved in the export of select proteins, such as chitin synthase Chs3p, from the Golgi to the plasma membrane; interacts selectively with the activated, GTP-bound form of Arf1p; Chs5p is the only protein with a BRCT domain that is not localized to the nucleus","termid":"PBO:0082684"}


id: PBO:0049500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 7","termid":"PBO:0049500"}


id: FYPO:0001536
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of copper ion measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal cellular copper level","synonyms":[{"name":"normal cellular copper accumulation","type":"related"},{"name":"normal cellular copper ion level","type":"exact"},{"name":"normal cellular copper level during mitotic cell cycle","type":"related"},{"name":"normal cellular copper level during vegetative growth","type":"exact"}],"termid":"FYPO:0001536"}


id: GO:0035574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H4 by the removal of a methyl group from lysine at position 20 of the histone.","definition_xrefs":["GOC:sp","PMID:20622853"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H4-K20 demethylation (obsolete GO:0035574)","termid":"GO:0035574"}


id: PBO:0076304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptogyrin 2","termid":"PBO:0076304"}


id: PBO:0029945
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_tapered_vegetative_cell_population_(obsolete_FYPO:0002292)","termid":"PBO:0029945"}


id: PBO:0088261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TruA family tRNA/ U2 snRNA pseudouridine synthase Lsp1","termid":"PBO:0088261"}


id: PBO:0028308
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_nucleus_during_cellular_response_to_methylglyoxal","termid":"PBO:0028308"}


id: PBO:0084075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl; regulated by the GTPase-activating protein, Cin2p, the human retinitis pigmentosa 2 (RP2) homolog","termid":"PBO:0084075"}


id: GO:0004319
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: acyl-[acyl-carrier protein] + NADP+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADPH + H+.","definition_xrefs":["EC:1.3.1.10"],"gene_count":0,"genotype_count":0,"name":"obsolete enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity (obsolete GO:0004319)","synonyms":[{"name":"NADPH 2-enoyl Co A reductase activity","type":"related"},{"name":"acyl-acyl-carrier-protein:NADP+ oxidoreductase (B-specific)","type":"related"},{"name":"enoyl acyl-carrier-protein reductase activity","type":"related"},{"name":"enoyl-ACP reductase (NADPH, B-specific) activity","type":"exact"},{"name":"enoyl-[acyl-carrier protein] reductase (NADPH, B-specific) activity","type":"exact"},{"name":"enoyl-acyl-carrier-protein reductase (NADPH, B-specific)","type":"related"},{"name":"enoyl-acyl-carrier-protein reductase (NADPH2, B-specific)","type":"related"},{"name":"reductase, enoyl-acyl carrier protein (reduced nicotinamide adenine dinucleotide phosphate)","type":"related"}],"termid":"GO:0004319"}


id: PBO:0081341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 141","termid":"PBO:0081341"}


id: FYPO:0004321
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of DNA measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"},{"relation_name":"is_a","term_name":"altered DNA level","termid":"FYPO:0004320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"altered DNA level during vegetative growth","synonyms":[{"name":"abnormal DNA content during vegetative growth","type":"exact"},{"name":"abnormal DNA level during vegetative growth","type":"exact"},{"name":"altered DNA content during vegetative growth","type":"exact"},{"name":"altered DNA level during mitotic cell cycle","type":"related"},{"name":"altered cellular DNA level during vegetative growth","type":"exact"}],"termid":"FYPO:0004321"}


id: PR:Q10065
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trk2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium transport protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1639.02c","synonyms":[{"name":"Spom972h-trk2","type":"exact"}],"termid":"PR:Q10065"}


id: FYPO:0007790
data:
  {"alleles_by_uniquename":{"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_01355:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01355","name":"cox6delta","uniquename":"SJAG_01355:allele-1"},"SJAG_01680:allele-2":{"allele_type":"amino_acid_mutation","description":"P470L","gene_uniquename":"SJAG_01680","name":"chk1-P470L","synonyms":[{"name":"chk1- hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"},"SJAG_02266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02266","name":"rad24delta","uniquename":"SJAG_02266:allele-1"},"SJAG_02486:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02486","name":"ste6delta","uniquename":"SJAG_02486:allele-1"},"SJAG_04287:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04287","name":"cds1delta","uniquename":"SJAG_04287:allele-1"},"SJAG_04671:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04671","name":"mrc1delta","uniquename":"SJAG_04671:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115375],"is_not":false,"summary":null,"term":"FYPO:0007790"}],"single_locus_phenotype":[{"annotations":[115365,115372,115755,115769,115770],"is_not":false,"summary":null,"term":"FYPO:0007790"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which hyphal growth is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:31150379"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"},{"relation_name":"is_a","term_name":"biological process phenotype","termid":"FYPO:0000300"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00601":null,"SJAG_01355":null,"SJAG_01680":null,"SJAG_02266":null,"SJAG_02486":null,"SJAG_04287":null,"SJAG_04671":null},"genotype_count":6,"genotypes_by_uniquename":{"cds1delta":{"display_name":"cds1delta","display_uniquename":"cds1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04287:allele-1","expression":"Null"}]}]},"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta":{"display_name":"chk1-P470L(aa) rad24delta","display_uniquename":"chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type__rad24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-2","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02266:allele-1","expression":"Null"}]}]},"cox6delta":{"display_name":"cox6delta","display_uniquename":"cox6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01355:allele-1","expression":"Null"}]}]},"mrc1delta":{"display_name":"mrc1delta","display_uniquename":"mrc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04671:allele-1","expression":"Null"}]}]},"rip1delta":{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]},"ste6delta":{"display_name":"ste6delta","display_uniquename":"ste6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02486:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02266","SJAG_01680"],"name":"normal hyphal growth","references_by_uniquename":{"PMID:23090706":null,"PMID:29566183":null,"PMID:31150379":null,"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_02486","SJAG_04671","SJAG_04287","SJAG_01355","SJAG_00601"],"single_locus_genotype_uniquenames":["cds1delta","cox6delta","rip1delta","mrc1delta","ste6delta"],"synonyms":[{"name":"hyphal growth abolished","type":"exact"}],"termid":"FYPO:0007790","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000015":null,"FYECO:0000137":null,"FYPO:0007790":null}}


id: PBO:0113208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial HMG-box protein; limits the copy number of mitochondrial DNA (mtDNA), antagonizing HMG-box containing protein Abf2p, a mtDNA packaging factor; localizes to the mitochondrial matrix; contains two HMG-boxes similar to Abf2p; null mutant is viable","termid":"PBO:0113208"}


id: FYPO:0008282
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 5-diphospho-1D-myo-inositol 1,2,3,4,6-pentakisphosphate (5-IP7) is lower than normal.","definition_xrefs":["PomBase:pc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular myo-inositol level","termid":"FYPO:0008280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular 5-IP7 level","termid":"FYPO:0008282"}


id: FYPO:0007738
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the distribution of a protein localized to chromatin at the 3' ends of genes that can be transcribed by RNA polymerase II is normal (i.e. indistinguishable from wild type) during metaphase of the mitotic cell cycle.","definition_xrefs":["PMID:33771877","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin at 3' end of genes","termid":"FYPO:0007731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization to chromatin at 3' end of RNA polymerase II-transcribed genes during mitotic metaphase","synonyms":[{"name":"normal condensin localization to chromatin at 3' end of RNA polymerase II-transcribed genes during mitotic metaphase","type":"broad"},{"name":"normal protein localisation to chromatin at 3' end of RNA polymerase II-transcribed genes during mitotic metaphase","type":"exact"},{"name":"normal protein localization to chromatin at 3' end of RNA polymerase II-transcribed genes during metaphase during vegetative growth","type":"exact"},{"name":"normal protein localization to chromatin at 3' end of RNA polymerase II-transcribed genes during metaphase of mitotic cell cycle","type":"exact"},{"name":"normal protein localization to chromatin downstream of RNA polymerase II-transcribed genes during mitotic metaphase","type":"exact"}],"termid":"FYPO:0007738"}


id: PBO:0056024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSP1 pseudogene 2","termid":"PBO:0056024"}


id: PBO:0004023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin family protein","termid":"PBO:0004023"}


id: GO:0050240
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O2 + pyrogallol = (Z)-5-oxohex-2-enedioate + 2 H+.","definition_xrefs":["EC:1.13.11.35","RHEA:19673"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"pyrogallol 1,2-oxygenase activity","secondary_identifiers":["KEGG_REACTION:R03246","MetaCyc:PYROGALLOL-12-OXYGENASE-RXN"],"synonyms":[{"name":"1,2,3-trihydroxybenzene:oxygen 1,2-oxidoreductase (decyclizing)","type":"related"},{"name":"pyrogallol 1,2-dioxygenase activity","type":"related"}],"termid":"GO:0050240"}


id: GO:2000565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of CD8-positive, alpha-beta T cell proliferation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of alpha-beta T cell proliferation","termid":"GO:0046642"},{"relation_name":"is_a","term_name":"regulation of CD8-positive, alpha-beta T cell proliferation","termid":"GO:2000564"},{"relation_name":"is_a","term_name":"negative regulation of CD8-positive, alpha-beta T cell activation","termid":"GO:2001186"},{"relation_name":"negatively_regulates","term_name":"CD8-positive, alpha-beta T cell proliferation","termid":"GO:0035740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of CD8-positive, alpha-beta T cell proliferation","termid":"GO:2000565"}


id: PBO:0031259
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_meiotic_telomere_clustering","termid":"PBO:0031259"}


id: PBO:0048638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein alpha 8","termid":"PBO:0048638"}


id: PBO:0060607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCBP2 antisense RNA 1","termid":"PBO:0060607"}


id: PBO:0091775
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by S. cerevisiae SPT8","termid":"PBO:0091775"}


id: PBO:0076748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tectonic family member 3","termid":"PBO:0076748"}


id: PBO:0061131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMD3 ribosome export adaptor pseudogene 1","termid":"PBO:0061131"}


id: PBO:0079815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like with PHD and ring finger domains 2","termid":"PBO:0079815"}


id: PBO:0066277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein Y-linked family 2 member A, pseudogene","termid":"PBO:0066277"}


id: PBO:0051894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit alpha 3","termid":"PBO:0051894"}


id: PR:Q10213
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- srs2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10213"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase srs2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.05","synonyms":[{"name":"Spom972h-srs2","type":"exact"}],"termid":"PR:Q10213"}


id: PBO:0003972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA/DNA helicase (predicted)","termid":"PBO:0003972"}


id: GO:0071242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ammonium stimulus.","definition_xrefs":["GO_REF:0000071","PMID:23509267","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to ammonium ion","termid":"GO:0060359"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to ammonium ion","secondary_identifiers":["GO:1903718"],"synonyms":[{"name":"cellular response to ammonia","type":"exact"}],"termid":"GO:0071242"}


id: PR:000050399
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A spindle pole body-associated protein cut12 (Schizosaccharomyces pombe) that has been phosphorylated at positions equivalent to Thr-75 and Thr-78 of the amino acid sequence represented by UniProtKB:O59755. Example: UniProtKB:O59755, Thr-75/Thr-78, MOD:00047.","definition_xrefs":["PMID:23333317","PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle pole body-associated protein cut12 (Schizosaccharomyces pombe)","termid":"PR:000050397"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cut12/Phos(T75,T78)","pombase_gene_id":"SPBC649.05","synonyms":[{"name":"PomBase_original_PRO_term_name: spindle pole body-associated protein cut12 phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-cut12/Phos:1","type":"exact"},{"name":"UniProtKB:O59755, Thr-75/Thr-78, MOD:00047","type":"narrow"},{"name":"cut12/Phos(T75,T78)","type":"exact"}],"termid":"PR:000050399"}


id: GO:2001234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic signaling pathway.","definition_xrefs":["GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"is_a","term_name":"regulation of apoptotic signaling pathway","termid":"GO:2001233"},{"relation_name":"negatively_regulates","term_name":"apoptotic signaling pathway","termid":"GO:0097190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of apoptotic signaling pathway","synonyms":[{"name":"negative regulation of apoptotic signalling pathway","type":"exact"}],"termid":"GO:2001234"}


id: PBO:0108899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 12","termid":"PBO:0108899"}


id: PBO:0110805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription repressor Scr1, glucose sensing","termid":"PBO:0110805"}


id: PBO:0054746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2155","termid":"PBO:0054746"}


id: PBO:0087821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFIID subunit (48 kDa); involved in RNA polymerase II transcription initiation; potential Cdc28p substrate","termid":"PBO:0087821"}


id: PBO:0039352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylmethionine decarboxylase 1 pseudogene 2","termid":"PBO:0039352"}


id: GO:0044515
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of glucagon-like peptide receptor 1 activity in of the bitten organism.","definition_xrefs":["GOC:fj","GOC:jl","PMID:8405712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of glucagon-like peptide receptor 1 activity in another organism","termid":"GO:0044512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in positive regulation of glucagon-like peptide receptor 1 activity in another organism","synonyms":[{"name":"envenomation resulting in positive regulation of glucagon-like peptide receptor 1 activity in other organism","type":"exact"}],"termid":"GO:0044515"}


id: PBO:0012840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-5'-exoribonuclease activity Dis3L2","termid":"PBO:0012840"}


id: PATO:0000643
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it.","definition_xrefs":["spinalstenosis:spinalstenosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protruding","termid":"PATO:0001598"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"herniated","termid":"PATO:0000643"}


id: GO:0030242
data:
  {"annotated_genes":["SJAG_00115","SJAG_04502","SJAG_00114","SJAG_05017","SJAG_04963","SJAG_03851","SJAG_04552","SJAG_01783"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[83867,93665,93679,94686,96372],"is_not":false,"summary":null,"term":"GO:0030242"},{"annotations":[96070,104790,98232],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000425"}]},"cv_name":"biological_process","definition":"The process in which peroxisomes are delivered to a type of vacuole and degraded in response to changing nutrient conditions.","definition_xrefs":["PMID:10547367","PMID:20083110","GOC:autophagy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autophagy","termid":"GO:0006914"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00115":null,"SJAG_01783":null,"SJAG_03851":null,"SJAG_04502":null,"SJAG_04552":null,"SJAG_04963":null,"SJAG_05017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006914","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"autophagy of peroxisome","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"peroxisome degradation","type":"broad"},{"name":"peroxisome disassembly","type":"broad"},{"name":"pexophagy","type":"related"}],"termid":"GO:0030242","terms_by_termid":{"GO:0000425":null,"GO:0030242":null}}


id: PBO:0084270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein; localized to late Golgi vesicles along with the v-SNARE Tlg2p; may interact with ribosomes, based on co-purification experiments; may have a role in intracellular sterol transport","termid":"PBO:0084270"}


id: PBO:0073292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 14","termid":"PBO:0073292"}


id: GO:0019938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of isopeptide bonds by ligation of peptidyl-lysine and peptidyl-asparagine residues; occurs in mammals in proteins as yet unidentified by a mechanism probably analogous to that of transglutaminase reactions.","definition_xrefs":["RESID:AA0294"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via N6-(L-isoaspartyl)-L-lysine, presumed catalytic (obsolete GO:0019938)","termid":"GO:0019938"}


id: PBO:0053363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 272","termid":"PBO:0053363"}


id: GO:0004216
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of peptide bonds. Has a broad proteolytic activity. With small-molecule substrates and inhibitors, the major determinant of specificity is P2, which is preferably Leu, Met > Phe, and not Arg.","definition_xrefs":["EC:3.4.22.38"],"gene_count":0,"genotype_count":0,"name":"obsolete cathepsin K activity (obsolete GO:0004216)","synonyms":[{"name":"cathepsin K activity","type":"exact"},{"name":"cathepsin O activity","type":"related"},{"name":"cathepsin O2 activity","type":"related"},{"name":"cathepsin X activity","type":"related"}],"termid":"GO:0004216"}


id: FYPO:0005851
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the biotinylation of one or more specific proteins is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein modification during vegetative growth","termid":"FYPO:0000329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0002274","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"abnormal protein biotinylation during vegetative growth","synonyms":[{"name":"abnormal protein biotinylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005851"}


id: FYPO:0000891
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3 acetylation during vegetative growth","termid":"FYPO:0002361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0002274","FYPO:0002494","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal histone H3-K9 acetylation during vegetative growth","synonyms":[{"name":"abnormal histone H3-K9 acetylation during mitotic cell cycle","type":"related"},{"name":"abnormal histone H3K9 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0000891"}


id: GO:0021717
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the inferior olivary nucleus to attain its fully functional state. The inferior olivary nucleus is a capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids. Neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex; these neurons have been implicated in various functions, such as learning and timing of movements.","definition_xrefs":["GOC:dph","GOC:jid","GO_REF:0000021","GOC:dgh","GOC:cls","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"medulla oblongata maturation","termid":"GO:0021582"},{"relation_name":"part_of","term_name":"inferior olivary nucleus development","termid":"GO:0021713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inferior olivary nucleus maturation","synonyms":[{"name":"inferior olive maturation","type":"related"}],"termid":"GO:0021717"}


id: PBO:0043110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"component of inhibitor of nuclear factor kappa B kinase complex","termid":"PBO:0043110"}


id: PBO:0060611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCCRP1, F-box associated domain containing","termid":"PBO:0060611"}


id: GO:0004326
data:
  {"annotated_genes":["SJAG_03224","SJAG_00529"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88973,100874],"is_not":false,"summary":null,"term":"GO:0004326"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + tetrahydrofolyl-(Glu)(n) + L-glutamate = ADP + phosphate + tetrahydrofolyl-(Glu)(n+1).","definition_xrefs":["EC:6.3.2.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00529":null,"SJAG_03224":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"tetrahydrofolylpolyglutamate synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:FOLYLPOLYGLUTAMATESYNTH-RXN","Reactome:R-HSA-197958","Reactome:R-HSA-200681","RHEA:10580","Reactome:R-HSA-200682"],"synonyms":[{"name":"FPGS activity","type":"related"},{"name":"N(10)-formyltetrahydropteroyldiglutamate synthetase activity","type":"related"},{"name":"N10-formyltetrahydropteroyldiglutamate synthetase activity","type":"related"},{"name":"folate polyglutamate synthetase activity","type":"related"},{"name":"folylpoly(gamma-glutamate) synthase activity","type":"related"},{"name":"folylpoly-gamma-glutamate synthase activity","type":"related"},{"name":"folylpoly-gamma-glutamate synthetase-dihydrofolate synthetase activity","type":"related"},{"name":"folylpolyglutamate synthase activity","type":"exact"},{"name":"folylpolyglutamate synthetase activity","type":"related"},{"name":"folylpolyglutamyl synthetase activity","type":"related"},{"name":"formyltetrahydropteroyldiglutamate synthetase activity","type":"related"},{"name":"tetrahydrofolate synthase activity","type":"related"},{"name":"tetrahydrofolate:L-glutamate gamma-ligase (ADP-forming) activity","type":"related"},{"name":"tetrahydrofolyl-[gamma-Glu]n:L-glutamate gamma-ligase (ADP-forming)","type":"related"},{"name":"tetrahydropteroyl-[gamma-polyglutamate]:L-glutamate gamma-ligase (ADP-forming)","type":"related"}],"termid":"GO:0004326","terms_by_termid":{"GO:0004326":null}}


id: PBO:0079910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UQCRFS1 divergent transcript","termid":"PBO:0079910"}


id: PBO:0077959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 13-3","termid":"PBO:0077959"}


id: PBO:0083241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; expression induced by calcium shortage","termid":"PBO:0083241"}


id: PBO:0076810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TENM3 antisense transcript 1","termid":"PBO:0076810"}


id: GO:1990476
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A synaptic vesicle belonging to the pool that remain unreleased even after prolonged stimulation causes a saturating degree of vesicular turnover. 50-80% of the total number of synaptic vesicles at a resting terminal bouton are in this pool.","definition_xrefs":["PMID:22745285","GOC:pad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synaptic vesicle","termid":"GO:0008021"},{"relation_name":"part_of","term_name":"terminal bouton","termid":"GO:0043195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"synaptic vesicle, resting pool","synonyms":[{"name":"reserve pool of synaptic vesicles","type":"exact"},{"name":"resting pool of synaptic vesicles","type":"exact"}],"termid":"GO:1990476"}


id: PBO:0056626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 7","termid":"PBO:0056626"}


id: PBO:0064497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II subunit A","termid":"PBO:0064497"}


id: PBO:0069682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 959, pseudogene","termid":"PBO:0069682"}


id: PATO:0001396
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A monadic quality of continuant that exists at the cellular level of organisation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical object quality","termid":"PATO:0001241"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cellular quality","termid":"PATO:0001396"}


id: FYPO:0004427
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the dephosphorylation of the ribosomal small subunit protein S6 begins later than normal when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah","PMID:24247430"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein dephosphorylation","termid":"FYPO:0004426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002494","FYPO:0002274","FYPO:0000002"],"is_obsolete":false,"name":"delayed onset of ribosomal S6 protein dephosphorylation during cellular response to nitrogen starvation","synonyms":[{"name":"delayed onset of dephosphorylation of ribosomal S6 during cellular response to nitrogen starvation","type":"exact"},{"name":"delayed onset of ribosomal S6 dephosphorylation during cellular response to nitrogen starvation","type":"exact"},{"name":"delayed ribosomal S6 protein dephosphorylation during cellular response to nitrogen starvation","type":"exact"}],"termid":"FYPO:0004427"}


id: GO:0015866
data:
  {"annotated_genes":["SJAG_00612","SJAG_02050"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98964,107041],"is_not":false,"summary":null,"term":"GO:0015866"},{"annotations":[107043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140021"}]},"cv_name":"biological_process","definition":"The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"purine ribonucleotide transport","termid":"GO:0015868"},{"relation_name":"is_a","term_name":"adenine nucleotide transport","termid":"GO:0051503"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00612":null,"SJAG_02050":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"ADP transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015866","terms_by_termid":{"GO:0015866":null,"GO:0140021":null}}


id: GO:0120299
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: histamine + L-glutaminyl-[protein] = 5-histaminyl-L-glutamyl-[protein].","definition_xrefs":["PMID:23022564","GOC:sp","PMID:23797785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acyltransferase activity","termid":"GO:0016410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"peptide histaminyltransferase activity","secondary_identifiers":["RHEA:66564"],"termid":"GO:0120299"}


id: PBO:0076353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 17","termid":"PBO:0076353"}


id: PBO:0087775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of UAF (upstream activation factor) complex; UAF is an RNA polymerase I specific transcription stimulatory factor composed of Uaf30p, Rrn5p, Rrn9p, Rrn10p, histones H3 and H4; targeting factor for the UAF that facilitates activation of many rDNA genes; deletion decreases cellular growth rate; UAF30 has a paralog, TRI1, that arose from the whole genome duplication","termid":"PBO:0087775"}


id: PR:O59674
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ort1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59674"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized mitochondrial carrier C29A3.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.11c","synonyms":[{"name":"Spom972h-ort1","type":"exact"}],"termid":"PR:O59674"}


id: SO:0001892
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature amplification of a region containing a transcription factor binding site.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory_region_amplification","termid":"SO:0001891"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFBS_amplification","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"TFBS amplification ","type":"exact"},{"name":"VEP:TFBS_amplification","type":"exact"},{"name":"transcription factor binding site amplification","type":"exact"}],"termid":"SO:0001892"}


id: PBO:0091264
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Csx1-Interacting Protein","termid":"PBO:0091264"}


id: GO:0060020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroepithelial cells of the neural tube give rise to Brgmann glial cells, specialized bipotential progenitors cells of the cerebellum. Differentiation includes the processes involved in commitment of a cell to a specific fate.","definition_xrefs":["GOC:dph","PMID:10375501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"astrocyte differentiation","termid":"GO:0048708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Bergmann glial cell differentiation","termid":"GO:0060020"}


id: PBO:0000068
data:
  {"annotation_feature_type":"gene","cv_name":"m_f_g","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein","termid":"PBO:0000068"}


id: PBO:0065588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 4","termid":"PBO:0065588"}


id: FYPO:0005219
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a transcript, i.e. an RNA molecule synthesized on a DNA template by RNA polymerase, is shorter than normal.","definition_xrefs":["PomBase:mah","SO:0000673","PMID:26582768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transcript length","termid":"FYPO:0003048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0003048"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0001985","FYPO:0003048"],"is_obsolete":false,"name":"decreased transcript length","synonyms":[{"name":"short transcript","type":"exact"},{"name":"shortened transcript","type":"exact"}],"termid":"FYPO:0005219"}


id: GO:0002521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized hemopoietic precursor cell acquires the specialized features of a leukocyte. A leukocyte is an achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.","definition_xrefs":["GOC:add","CL:0000738","PMID:16551264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"hemopoiesis","termid":"GO:0030097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte differentiation","synonyms":[{"name":"immune cell differentiation","type":"exact"},{"name":"leucocyte differentiation","type":"exact"}],"termid":"GO:0002521"}


id: GO:0032771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the activity of a tyrosinase enzyme.","definition_xrefs":["GOC:dph","GOC:mah","GOC:tb","PMID:2494997"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of monooxygenase activity","termid":"GO:0032768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of tyrosinase activity","synonyms":[{"name":"regulation of monophenol monooxygenase activity","type":"related"},{"name":"regulation of monophenol oxygenase activity","type":"exact"}],"termid":"GO:0032771"}


id: PBO:0049607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 10","termid":"PBO:0049607"}


id: PBO:0045851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 41","termid":"PBO:0045851"}


id: PBO:0074960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-2","termid":"PBO:0074960"}


id: GO:0075168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its protein kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of protein kinase-mediated signal transduction in response to host (obsolete GO:0075168)","synonyms":[{"name":"regulation of symbiont protein kinase-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075168"}


id: PR:O74756
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- chs2 gene.","definition_xrefs":["UniProtKB:O74756","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitin synthase-like protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1709.01","synonyms":[{"name":"Spom972h-chs2","type":"exact"}],"termid":"PR:O74756"}


id: PBO:0043069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHRM3 antisense RNA 2","termid":"PBO:0043069"}


id: GO:0047345
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribose 5-phosphate + ADP + H+ = ADP-ribose + phosphate.","definition_xrefs":["EC:2.7.7.35","RHEA:14529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016779"}],"interesting_parent_ids":["GO:0016779","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ribose-5-phosphate adenylyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01052","MetaCyc:2.7.7.35-RXN"],"synonyms":[{"name":"ADP ribose phosphorylase activity","type":"related"},{"name":"ADP-ribose phosphorylase activity","type":"related"},{"name":"ADP:D-ribose-5-phosphate adenylyltransferase activity","type":"related"},{"name":"ADP:ribose-5-phosphate adenylyltransferase activity","type":"exact"},{"name":"adenosine diphosphoribose phosphorylase activity","type":"related"}],"termid":"GO:0047345"}


id: GO:0031102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of neuronal processes such as axons or dendrites in response to their loss or damage.","definition_xrefs":["GOC:dgh","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regeneration","termid":"GO:0031099"},{"relation_name":"is_a","term_name":"neuron projection development","termid":"GO:0031175"},{"relation_name":"is_a","term_name":"cellular response to stress","termid":"GO:0033554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron projection regeneration","synonyms":[{"name":"neurite regeneration","type":"narrow"}],"termid":"GO:0031102"}


id: GO:0005480
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete vesicle transport (obsolete GO:0005480)","synonyms":[{"name":"vesicle transport","type":"exact"}],"termid":"GO:0005480"}


id: GO:0072651
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interferon-tau due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah","GOC:BHF","PMID:15546383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"type I interferon production","termid":"GO:0032606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"interferon-tau production","secondary_identifiers":["GO:0072652"],"synonyms":[{"name":"IFN-tau production","type":"exact"},{"name":"IFN-tau secretion","type":"exact"},{"name":"IFNT production","type":"exact"},{"name":"interferon-tau secretion","type":"narrow"}],"termid":"GO:0072651"}


id: GO:0009385
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: N-acetyl-D-mannosamine-6-phosphate = N-acetyl-D-glucosamine-6-phosphate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete N-acylmannosamine-6-phosphate 2-epimerase activity (obsolete GO:0009385)","synonyms":[{"name":"N-acylmannosamine-6-P epimerase activity","type":"exact"}],"termid":"GO:0009385"}


id: PBO:0072449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 13","termid":"PBO:0072449"}


id: PBO:0068181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 488","termid":"PBO:0068181"}


id: PBO:0071660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37a pseudogene 1","termid":"PBO:0071660"}


id: GO:0044468
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the modulation of the frequency, rate or extent of blood coagulation in the bitten organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of process in another organism","termid":"GO:0035738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in modulation of blood coagulation in another organism","synonyms":[{"name":"envenomation resulting in modulation of blood coagulation in other organism","type":"exact"},{"name":"envenomation resulting in regulation of blood coagulation in other organism","type":"exact"}],"termid":"GO:0044468"}


id: GO:0032948
data:
  {"annotated_genes":["SJAG_00610","SJAG_04666","SJAG_02278","SJAG_00424"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88451,98958,85471,90985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving alpha-glucans.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polysaccharide metabolic process","termid":"GO:0032881"},{"relation_name":"regulates","term_name":"alpha-glucan metabolic process","termid":"GO:0030978"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_02278":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of alpha-glucan metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of alpha-glucan metabolism","type":"exact"}],"termid":"GO:0032948","terms_by_termid":{"GO:0070610":null}}


id: GO:0006186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of introducing a phosphate group into dGDP, deoxyguanosine diphosphate, to produce dGTP.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete dGDP phosphorylation (obsolete GO:0006186)","termid":"GO:0006186"}


id: GO:0045866
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of genetic recombination within the DNA of the genes coding for ribosomal RNA.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of recombination within rDNA repeats (obsolete GO:0045866)","synonyms":[{"name":"positive regulation of recombination within rDNA repeats","type":"exact"}],"termid":"GO:0045866"}


id: GO:1904260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of basement membrane assembly involved in embryonic body morphogenesis.","definition_xrefs":["GOC:TermGenie","PMID:23940118","GOC:als","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of extracellular matrix assembly","termid":"GO:1901202"},{"relation_name":"is_a","term_name":"regulation of basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:1904259"},{"relation_name":"negatively_regulates","term_name":"basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:2001197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of basement membrane assembly involved in embryonic body morphogenesis","synonyms":[{"name":"down regulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"down-regulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"downregulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"inhibition of basement membrane assembly involved in embryonic body morphogenesis","type":"narrow"}],"termid":"GO:1904260"}


id: PBO:0057969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3689b","termid":"PBO:0057969"}


id: PBO:0075617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal peptide peptidase like 2C","termid":"PBO:0075617"}


id: PBO:0069833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1119, pseudogene","termid":"PBO:0069833"}


id: PBO:0003071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fizzy-related protein Mfr1","termid":"PBO:0003071"}


id: GO:0050121
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acyl-D-glucosamine = N-acyl-D-mannosamine.","definition_xrefs":["EC:5.1.3.8","MetaCyc:N-ACYLGLUCOSAMINE-2-EPIMERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"N-acylglucosamine 2-epimerase activity","secondary_identifiers":["RHEA:19033","Reactome:R-HSA-6803761"],"synonyms":[{"name":"GlcNAc 2-epimerase activity","type":"related"},{"name":"N-acetyl-D-glucosamine 2-epimerase activity","type":"related"},{"name":"N-acetylglucosamine 2-epimerase activity","type":"related"},{"name":"N-acyl-D-glucosamine 2-epimerase activity","type":"related"},{"name":"acylglucosamine 2-epimerase activity","type":"related"}],"termid":"GO:0050121"}


id: PBO:0082313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Assembly factor for the eIF2 translation initiation factor complex; regulates translational initiation; conserved residues of this ATP-Grasp protein that bind to ATP-Mg2+ in the pombe ortholog are required for complex assembly in budding yeast; interaction with eIF2 subunit Gcd11p facilitates complex assembly and activity; required for the START transition and timely progression through G2; regulated by nutrient availability; human ortholog complements the yeast mutant","termid":"PBO:0082313"}


id: PATO:0001002
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001002 alternation value (obsolete PATO:0001002)","termid":"PATO:0001002"}


id: PBO:0067316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 402, pseudogene","termid":"PBO:0067316"}


id: PBO:0040180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartate beta-hydroxylase domain containing 1","termid":"PBO:0040180"}


id: PATO:0000766
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000766 relative consumption value (obsolete PATO:0000766)","termid":"PATO:0000766"}


id: PBO:0108593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AFG2 AAA ATPase homolog A","termid":"PBO:0108593"}


id: PBO:0016545
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae SRT1 and RER2","termid":"PBO:0016545"}


id: FYPO:0002962
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the Mei2 nuclear dot is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to Mei2 nuclear dot","termid":"FYPO:0002958"},{"relation_name":"is_a","term_name":"abolished protein localization to nucleus","termid":"FYPO:0003450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to Mei2 nuclear dot","synonyms":[{"name":"abolished protein localization to meiRNA nuclear dot","type":"related"},{"name":"protein localisation to Mei2 nuclear dot abolished","type":"exact"},{"name":"protein localization to Mei2 nuclear dot abolished","type":"exact"}],"termid":"FYPO:0002962"}


id: PBO:0054637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2042","termid":"PBO:0054637"}


id: PBO:0113184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lipid-binding ER tricalbin involved in ER-plasma membrane tethering; one of at least 7 proteins (Ice2p, Ist2p, Scs2/Scs22p, Tcb1-Tcb3p) that affect cER tethering and contact with the plasma membrane (PM); regulates PI4P levels by controlling access of the Sac1p phosphatase to its substrate PI4P in the PM; regulates PM phospholipid homeostasis; contains 3 calcium and lipid binding domains; localizes to the cortical ER and to mitochondria; C-termini of Tcb1p, Tcb2p and Tcb3p interact","termid":"PBO:0113184"}


id: PBO:0041271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q like 3","termid":"PBO:0041271"}


id: GO:0034133
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of toll-like receptor 1 signaling pathway.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 1 signaling pathway","termid":"GO:0034131"},{"relation_name":"is_a","term_name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"},{"relation_name":"positively_regulates","term_name":"toll-like receptor 1 signaling pathway","termid":"GO:0034130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of toll-like receptor 1 signaling pathway","synonyms":[{"name":"positive regulation of TLR1 signaling pathway","type":"exact"},{"name":"positive regulation of toll-like receptor 1 signalling pathway","type":"exact"}],"termid":"GO:0034133"}


id: PBO:0046661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"espin like","termid":"PBO:0046661"}


id: PBO:0046708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ETS variant transcription factor 6","termid":"PBO:0046708"}


id: PBO:0085965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; overexpression suppresses the lethality caused by a rad53 null mutation","termid":"PBO:0085965"}


id: GO:0061120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of directed movement of a motile cell or organism up a concentration gradient of 3',5'-cAMP by the action of DIF-1. DIF-1 is a chlorinated alkylphenone.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of positive chemotaxis to cAMP by chlorinated alkylphenone","termid":"GO:0061119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of positive chemotaxis to cAMP by DIF-1","termid":"GO:0061120"}


id: GO:0102534
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: apigenin 4',7-dimethyl ether + O2 + reduced [NADPH--hemoprotein reductase] = H+ + H2O + ladanein + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:73435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"apigenin-7,4'-dimethyl ether 6-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-14751"],"termid":"GO:0102534"}


id: PBO:0052614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KRBOX5 pseudogene 1","termid":"PBO:0052614"}


id: PR:Q10308
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC6C3.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 43 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6C3.05","synonyms":[{"name":"Spom972h-SPAC6C3.05","type":"exact"}],"termid":"PR:Q10308"}


id: GO:0034157
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of toll-like receptor 7 signaling pathway.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 7 signaling pathway","termid":"GO:0034155"},{"relation_name":"is_a","term_name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"positively_regulates","term_name":"toll-like receptor 7 signaling pathway","termid":"GO:0034154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of toll-like receptor 7 signaling pathway","synonyms":[{"name":"positive regulation of TLR7 signaling pathway","type":"exact"},{"name":"positive regulation of toll-like receptor 7 signalling pathway","type":"exact"}],"termid":"GO:0034157"}


id: PBO:0078321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor delta joining 3","termid":"PBO:0078321"}


id: GO:0061605
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP [molybdopterin-synthase sulfur-carrier protein]-Gly-Gly = diphosphate [molybdopterin-synthase sulfur-carrier protein]-Gly-Gly-AMP.","definition_xrefs":["GOC:dph","EC:2.7.7.80","PMID:22370186","PMID:18154309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016779","GO:0003674"],"is_obsolete":false,"name":"molybdopterin-synthase adenylyltransferase activity","secondary_identifiers":["RHEA:43616"],"termid":"GO:0061605"}


id: GO:0051842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process, either active or passive, by which an organism avoids the effects of the symbiont organism's immune response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mb"],"gene_count":0,"genotype_count":0,"name":"obsolete evasion or tolerance of symbiont immune response (obsolete GO:0051842)","synonyms":[{"name":"evasion or tolerance of symbiont immune response","type":"exact"},{"name":"immune evasion","type":"broad"}],"termid":"GO:0051842"}


id: PBO:0070869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L15","termid":"PBO:0070869"}


id: PBO:0061748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear transport factor 2 like export factor 1 pseudogene 1","termid":"PBO:0061748"}


id: PBO:0085274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal integral membrane protein; involved in negative regulation of peroxisome size; partially functionally redundant with Pex30p and Pex32p; probably acts at a step downstream of steps mediated by Pex28p and Pex29p; PEX31 has a paralog, PEX30, that arose from the whole genome duplication","termid":"PBO:0085274"}


id: PBO:0031842
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_endoplasmic_reticulum_morphology","termid":"PBO:0031842"}


id: GO:0003376
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by sphingosine-1-phosphate binding to its receptor on the surface of a cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:14592418","GOC:ascb_2009","GOC:signaling","PMID:22001186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"},{"relation_name":"is_a","term_name":"sphingolipid mediated signaling pathway","termid":"GO:0090520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"sphingosine-1-phosphate receptor signaling pathway","secondary_identifiers":["GO:0001789"],"synonyms":[{"name":"S1P receptor signaling pathway","type":"exact"},{"name":"S1P signaling pathway","type":"related"},{"name":"S1P-activated G-protein coupled receptor signaling pathway","type":"exact"},{"name":"S1P-activated GPCR signaling pathway","type":"exact"},{"name":"S1P-stimulated signal transduction pathway","type":"exact"},{"name":"sphingolipid signaling pathway","type":"broad"},{"name":"sphingolipid signalling pathway","type":"broad"}],"termid":"GO:0003376"}


id: PBO:0052922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 19-5","termid":"PBO:0052922"}


id: PBO:0090639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosyl hydrolase family Crr1","termid":"PBO:0090639"}


id: PBO:0068684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 65, pseudogene","termid":"PBO:0068684"}


id: PBO:0090987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Tlg2","termid":"PBO:0090987"}


id: FYPO:0007668
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a vegetative cell is elongated and progression through the mitotic cell cycle is arrested in G1 phase.","definition_xrefs":["PMID:8121488","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle arrest in mitotic G1 phase","termid":"FYPO:0000445"},{"relation_name":"is_a","term_name":"elongated vegetative cell","termid":"FYPO:0001122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000005","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"elongated vegetative cell with cell cycle arrest in mitotic G1 phase","synonyms":[{"name":"abnormal cell cycle arrest in mitotic G1 phase with elongated cell","type":"exact"},{"name":"elongated cell with cell cycle arrest in mitotic G1 phase during vegetative growth","type":"exact"},{"name":"elongated vegetative cell with cell cycle arrest in G1 phase of mitotic cell cycle","type":"exact"},{"name":"elongated vegetative cell with mitotic G1 phase cell cycle arrest","type":"exact"}],"termid":"FYPO:0007668"}


id: GO:0021749
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the ventral cochlear nucleus over time, from its formation to the mature structure.","definition_xrefs":["GOC:cls","GOC:dph","GOC:curators","GO_REF:0000021","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cochlear nucleus development","termid":"GO:0021747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventral cochlear nucleus development","termid":"GO:0021749"}


id: GO:1905546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylpropanoid stimulus.","definition_xrefs":["GO_REF:0000071","PMID:22700048","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"response to phenylpropanoid","termid":"GO:0080184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to phenylpropanoid","termid":"GO:1905546"}


id: SO:0001445
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polar, hydorophilic amino acid encoded by the codons ACN (ACT, ACC, ACA and ACG).","direct_ancestors":[{"relation_name":"is_a","term_name":"amino_acid","termid":"SO:0001237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonine","synonyms":[{"name":"T","type":"exact"},{"name":"Thr","type":"exact"}],"termid":"SO:0001445"}


id: GO:0150065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of deacetylase activity.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:19457097"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hydrolase activity","termid":"GO:0051336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of deacetylase activity","termid":"GO:0150065"}


id: GO:1990124
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A ribonucleoprotein complex containing both protein and messenger RNA (mRNA) molecules.","definition_xrefs":["PMID:15574591","PMID:21915786","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete messenger ribonucleoprotein complex (obsolete GO:1990124)","synonyms":[{"name":"mRNA-protein complex","type":"exact"},{"name":"mRNP","type":"exact"},{"name":"mRNP complex","type":"exact"},{"name":"messenger ribonucleoprotein particle","type":"related"}],"termid":"GO:1990124"}


id: PR:O74448
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10657:SF4","OMA:SCHPO04403","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-prolyl cis-trans isomerase pin1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.03","secondary_identifiers":["UniProtKB:O74448"],"synonyms":[{"name":"PPIase pin1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PIN1","type":"exact"}],"termid":"PR:O74448"}


id: GO:0045030
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity, activated by UTP.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled pyrimidinergic nucleotide receptor activity","termid":"GO:0071553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"G protein-coupled UTP receptor activity","secondary_identifiers":["GO:0015065"],"synonyms":[{"name":"UTP-activated nucleotide receptor activity","type":"broad"},{"name":"purinoceptor type U","type":"broad"},{"name":"uridine nucleotide receptor activity","type":"broad"}],"termid":"GO:0045030"}


id: PR:Q9URU4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pfl5 gene.","definition_xrefs":["UniProtKB:Q9URU4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell agglutination protein C1289.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1289.15","synonyms":[{"name":"Spom972h-pfl5","type":"exact"}],"termid":"PR:Q9URU4"}


id: GO:0015617
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete pilin/fimbrilin exporter activity (obsolete GO:0015617)","synonyms":[{"name":"pilin/fimbrilin exporter activity","type":"exact"}],"termid":"GO:0015617"}


id: PBO:0054704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2113","termid":"PBO:0054704"}


id: PBO:0047327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"failed axon connections homolog, metaxin like GST domain containing","termid":"PBO:0047327"}


id: PBO:0062351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily M member 2 pseudogene","termid":"PBO:0062351"}


id: PATO:0001917
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity.","definition_xrefs":["PATOC:wd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior to","termid":"PATO:0001632"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anteroventral to","termid":"PATO:0001917"}


id: GO:0032463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of protein homooligomerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein oligomerization","termid":"GO:0032460"},{"relation_name":"is_a","term_name":"regulation of protein homooligomerization","termid":"GO:0032462"},{"relation_name":"negatively_regulates","term_name":"protein homooligomerization","termid":"GO:0051260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"negative regulation of protein homooligomerization","synonyms":[{"name":"down regulation of protein homooligomerization","type":"exact"},{"name":"down-regulation of protein homooligomerization","type":"exact"},{"name":"downregulation of protein homooligomerization","type":"exact"},{"name":"inhibition of protein homooligomerization","type":"narrow"}],"termid":"GO:0032463"}


id: PBO:0058236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4524b","termid":"PBO:0058236"}


id: GO:0097356
data:
  {"annotated_genes":["SJAG_03789"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[114738],"is_not":false,"summary":null,"term":"GO:0097356"}]},"cv_name":"cellular_component","definition":"The perinucleolar compartment (PNC) is a subnuclear structure associated with, but structurally distinct from, the nucleolus. The PNC contains large amounts of the heterogeneous nuclear ribonucleoprotein complex (hnRNP) called hnRNP 1 (PTB). Many RNA binding proteins as well as RNA polymerase III transcripts are highly enriched in this compartment. PTB and pol III transcripts are required for the integrity of the PNC.","definition_xrefs":["Wikipedia:Perinucleolar_compartment","PMID:21385875","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nuclear lumen","termid":"GO:0031981"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03789":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575"],"is_obsolete":false,"name":"perinucleolar compartment","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"perinucleolar region","type":"exact"}],"termid":"GO:0097356","terms_by_termid":{"GO:0097356":null}}


id: GO:0043048
data:
  {"annotated_genes":["SJAG_04231"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114015],"is_not":false,"summary":null,"term":"GO:0043048"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dolichyl diphosphate, a phosphorylated dolichol derivative.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid biosynthetic process","termid":"GO:0008654"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04231":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"dolichyl monophosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"dolichyl monophosphate anabolism","type":"exact"},{"name":"dolichyl monophosphate biosynthesis","type":"exact"},{"name":"dolichyl monophosphate formation","type":"exact"},{"name":"dolichyl monophosphate synthesis","type":"exact"}],"termid":"GO:0043048","terms_by_termid":{"GO:0043048":null}}


id: PBO:0068375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 168","termid":"PBO:0068375"}


id: PBO:0039753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein O pseudogene 4","termid":"PBO:0039753"}


id: GO:1905107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Dizocilpine stimulus.","definition_xrefs":["GOC:TermGenie","GO_REF:0000071","PMID:20064280"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular response to Dizocilpine (obsolete GO:1905107)","termid":"GO:1905107"}


id: PBO:0069773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1056, pseudogene","termid":"PBO:0069773"}


id: PBO:0034109
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-realizes","termid":"PBO:0034109"}


id: GO:1902212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of prolactin signaling pathway.","definition_xrefs":["PMID:11773439","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine-mediated signaling pathway","termid":"GO:0001960"},{"relation_name":"is_a","term_name":"regulation of prolactin signaling pathway","termid":"GO:1902211"},{"relation_name":"negatively_regulates","term_name":"prolactin signaling pathway","termid":"GO:0038161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of prolactin signaling pathway","synonyms":[{"name":"down regulation of PRL signaling pathway","type":"exact"},{"name":"down regulation of prolactin signaling pathway","type":"exact"},{"name":"down regulation of prolactin-mediated signaling pathway","type":"exact"},{"name":"down-regulation of PRL signaling pathway","type":"exact"},{"name":"down-regulation of prolactin signaling pathway","type":"exact"},{"name":"down-regulation of prolactin-mediated signaling pathway","type":"exact"},{"name":"downregulation of PRL signaling pathway","type":"exact"},{"name":"downregulation of prolactin signaling pathway","type":"exact"},{"name":"downregulation of prolactin-mediated signaling pathway","type":"exact"},{"name":"inhibition of PRL signaling pathway","type":"narrow"},{"name":"inhibition of prolactin signaling pathway","type":"narrow"},{"name":"inhibition of prolactin-mediated signaling pathway","type":"narrow"},{"name":"negative regulation of PRL signaling pathway","type":"exact"},{"name":"negative regulation of prolactin-mediated signaling pathway","type":"exact"}],"termid":"GO:1902212"}


id: PBO:0043038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"charged multivesicular body protein 7","termid":"PBO:0043038"}


id: PBO:0044649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynactin subunit 1","termid":"PBO:0044649"}


id: PATO:0001821
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's having no opening.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure, cavities","termid":"PATO:0002014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"imperforate","termid":"PATO:0001821"}


id: GO:0099550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"},{"relation_name":"is_a","term_name":"trans-synaptic signaling","termid":"GO:0099537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"trans-synaptic signaling, modulating synaptic transmission","termid":"GO:0099550"}


id: MOD:00531
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to L-aspartic acid with one (18)O as the result of having been deglycosylated in (18)O water.","definition_xrefs":["Unimod:170","PubMed:14435542"],"direct_ancestors":[{"relation_name":"is_a","term_name":"1x(18)O labeled deamidated L-asparagine","termid":"MOD:01293"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(18)O labeled deglycosylated asparagine","synonyms":[{"name":"Delta:H(1)O(-1)18O(1)","type":"related"},{"name":"glycosylated asparagine 18O labeling","type":"related"}],"termid":"MOD:00531"}


id: PBO:0064069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 103","termid":"PBO:0064069"}


id: PBO:0054400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1796","termid":"PBO:0054400"}


id: PBO:0084876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the small subunit; MRP51 exhibits genetic interactions with mutations in the COX2 and COX3 mRNA 5'-untranslated leader sequences","termid":"PBO:0084876"}


id: PBO:0074219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC44A3 pseudogene 1","termid":"PBO:0074219"}


id: PBO:0084566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Membrane peroxin of the peroxisomal importomer complex; complex facilitates the import of peroxisomal matrix proteins; required for peroxisome biogenesis","termid":"PBO:0084566"}


id: PBO:0057812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3133","termid":"PBO:0057812"}


id: PBO:0034178
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-ubiquitinates","termid":"PBO:0034178"}


id: PBO:0042510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin related family member 4","termid":"PBO:0042510"}


id: GO:0003423
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process resulting in the oriented physical partitioning and separation of a chondrocytes in the growth plate.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell division","termid":"GO:0051301"},{"relation_name":"part_of","term_name":"growth plate cartilage chondrocyte proliferation","termid":"GO:0003419"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"growth plate cartilage chondrocyte division","termid":"GO:0003423"}


id: GO:0006386
data:
  {"annotated_genes":["SJAG_03761","SJAG_00637","SJAG_03689","SJAG_02242"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89051,94230,95972,112166],"is_not":false,"summary":null,"term":"GO:0006386"}]},"cv_name":"biological_process","definition":"A transcription termination process that completes the production of a primary RNA polymerase II transcript. RNA polymerase III has an intrinsic ability to terminate transcription upon incorporation of at least 4 contiguous U residues.","definition_xrefs":["PMID:27371117","GOC:mah","PMID:12944462"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription termination","termid":"GO:0006353"},{"relation_name":"part_of","term_name":"transcription by RNA polymerase III","termid":"GO:0006383"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00637":null,"SJAG_02242":null,"SJAG_03689":null,"SJAG_03761":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"termination of RNA polymerase III transcription","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0019225"],"synonyms":[{"name":"RNA polymerase III transcription termination","type":"exact"},{"name":"RNA polymerase III transcription termination factor activity","type":"related"},{"name":"transcription termination from Pol III promoter","type":"exact"},{"name":"transcription termination from RNA polymerase III promoter","type":"exact"}],"termid":"GO:0006386","terms_by_termid":{"GO:0006386":null}}


id: PBO:0045264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein heavy chain domain 1","termid":"PBO:0045264"}


id: PBO:0091763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S acidic ribosomal protein P2","termid":"PBO:0091763"}


id: CHEBI:17634
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-glucose","termid":"CHEBI:17634"}


id: PR:O42948
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC16H5.13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized WD repeat-containing protein C16H5.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16H5.13","synonyms":[{"name":"Spom972h-SPBC16H5.13","type":"exact"}],"termid":"PR:O42948"}


id: GO:0005000
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with vasopressin to initiate a change in cell activity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"vasopressin receptor activity","secondary_identifiers":["GO:0016931"],"synonyms":[{"name":"vasopressin activated calcium mobilizing receptor activity","type":"narrow"}],"termid":"GO:0005000"}


id: PBO:0085232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAS-domain containing serine/threonine protein kinase; regulates sugar flux and translation in response to an unknown metabolite by phosphorylating Ugp1p and Gsy2p (sugar flux) and Caf20p, Tif11p and Sro9p (translation); PSK2 has a paralog, PSK1, that arose from the whole genome duplication","termid":"PBO:0085232"}


id: GO:0034329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a cell junction.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"cell junction organization","termid":"GO:0034330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"cell junction assembly","termid":"GO:0034329"}


id: GO:0018123
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transfer, from NAD, of ADP-ribose to peptidyl-cysteine to form peptidyl-S-(ADP-ribosyl)-L-cysteine.","definition_xrefs":["RESID:AA0169"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-cysteine ADP-ribosylation (obsolete GO:0018123)","termid":"GO:0018123"}


id: PBO:0088264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall alpha-amylase homolog Aah1","termid":"PBO:0088264"}


id: SO:0001551
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that increases the rate of transcription with respect to a reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rate_of_transcription_variant","termid":"SO:0001550"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased_transcription_rate_variant","synonyms":[{"name":"increased transcription rate variant","type":"exact"}],"termid":"SO:0001551"}


id: FYPO:0000301
data:
  {"alleles_by_uniquename":{"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_00993:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00993","name":"byr1delta","uniquename":"SJAG_00993:allele-1"},"SJAG_01355:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01355","name":"cox6delta","uniquename":"SJAG_01355:allele-1"},"SJAG_01718:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01718","name":"byr2delta","uniquename":"SJAG_01718:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_02379:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02379","name":"gap1delta","uniquename":"SJAG_02379:allele-1"},"SJAG_02486:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02486","name":"ste6delta","uniquename":"SJAG_02486:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_02923:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02923","name":"spk1delta","uniquename":"SJAG_02923:allele-1"},"SJAG_03453:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03453","name":"ras1delta","uniquename":"SJAG_03453:allele-1"},"SJAG_04009:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04009","name":"ste11delta","uniquename":"SJAG_04009:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115766,115763],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000760"},{"annotations":[115733,115722,115754,115728,115424,115739,115752,115729,115738,115736],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000280"}]},"cv_name":"fission_yeast_phenotype","definition":"A biological process phenotype that affects conjugation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological process 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id: GO:0022886
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables transport of a solute across a membrane. This kind of transporter interacts much more weakly with the solute than the carrier does. It is an aqueous pore that extends across the membrane. It may change from closed to open and back. It transports faster than a carrier. It is always passive.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"channel activity","termid":"GO:0015267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"channel-forming ionophore activity","synonyms":[{"name":"ionophore activity","type":"broad"}],"termid":"GO:0022886"}


id: PBO:0052213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel regulator","termid":"PBO:0052213"}


id: PBO:0036252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-glutamyl phosphate reductase Pro1","termid":"PBO:0036252"}


id: GO:1900640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of austinol biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"regulates","term_name":"austinol biosynthetic process","termid":"GO:1900560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of austinol biosynthetic process","synonyms":[{"name":"regulation of austinol anabolism","type":"exact"},{"name":"regulation of austinol biosynthesis","type":"exact"},{"name":"regulation of austinol formation","type":"exact"},{"name":"regulation of austinol synthesis","type":"exact"}],"termid":"GO:1900640"}


id: PBO:0078636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyroid hormone receptor interactor 10","termid":"PBO:0078636"}


id: GO:0009882
data:
  {"annotated_genes":["SJAG_02860"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[115334],"is_not":false,"summary":null,"term":"GO:0009882"}]},"cv_name":"molecular_function","definition":"The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 400-470nm. The response may involve a change in conformation.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photoreceptor activity","termid":"GO:0009881"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02860":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"blue light photoreceptor activity","references_by_uniquename":{"PMID:23873862":null},"termid":"GO:0009882","terms_by_termid":{"GO:0009882":null}}


id: PBO:0065902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB43 pseudogene 1","termid":"PBO:0065902"}


id: PBO:0052059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysyl-tRNA synthetase 1 pseudogene 3","termid":"PBO:0052059"}


id: PBO:0005042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-Q homolog Fta7","termid":"PBO:0005042"}


id: PBO:0034519
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-curved_elongated_vegetative_cell_with_long_curved_cytoplasmic_microtubules","termid":"PBO:0034519"}


id: PBO:0086273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a likely role in ribosomal maturation; required for accumulation of wild-type levels of large (60S) ribosomal subunits; binds to the helicase Dbp6p in pre-60S ribosomal particles in the nucleolus","termid":"PBO:0086273"}


id: SO:0001335
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Undermodified_hydroxywybutosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"undermodified_hydroxywybutosine","secondary_identifiers":["RNAMOD:040"],"synonyms":[{"name":"OHyW*","type":"exact"},{"name":"undermodified hydroxywybutosine","type":"exact"}],"termid":"SO:0001335"}


id: GO:0047046
data:
  {"annotated_genes":["SJAG_00502"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92422],"is_not":false,"summary":null,"term":"GO:0047046"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + 3-carboxy-2-hydroxyadipate = NADH + H+ + CO2 + 2-keto-adipate.","definition_xrefs":["EC:1.1.1.87"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00502":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"homoisocitrate dehydrogenase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-7970","RHEA:11900","GO:0047984"],"synonyms":[{"name":"(-)-1-hydroxy-1,2,4-butanetricarboxylate:NAD(+) oxidoreductase (decarboxylating) activity","type":"related"},{"name":"(-)-1-hydroxy-1,2,4-butanetricarboxylate:NAD+ oxidoreductase (decarboxylating)","type":"related"},{"name":"(1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate:NAD+ oxidoreductase (decarboxylating)","type":"related"},{"name":"2-hydroxy-3-carboxyadipate dehydrogenase activity","type":"related"},{"name":"3-carboxy-2-hydroxyadipate dehydrogenase activity","type":"exact"},{"name":"3-carboxy-2-hydroxyadipate:NAD(+) oxidoreductase (decarboxylating) activity","type":"related"},{"name":"3-carboxy-2-hydroxyadipate:NAD+ oxidoreductase (decarboxylating)","type":"related"},{"name":"homoisocitric dehydrogenase activity","type":"related"}],"termid":"GO:0047046","terms_by_termid":{"GO:0047046":null}}


id: PBO:0047232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 230 member D","termid":"PBO:0047232"}


id: GO:0030766
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + 11-O-demethyl-17-O-deacetylvindoline = S-adenosyl-L-homocysteine + 17-O-deacetylvindoline.","definition_xrefs":["EC:2.1.1.94"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.94-RXN","RHEA:20992"],"synonyms":[{"name":"11-demethyl-17-deacetylvindoline 11-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:11-O-demethyl-17-O-deacetylvindoline 11-O-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:16-hydroxytabersonine 16-O-methyltransferase activity","type":"related"},{"name":"tabersonine 16-O-methyltransferase activity","type":"related"}],"termid":"GO:0030766"}


id: PBO:0086046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function involved in RNA metabolism; has structural similarity to SBDS, the human protein mutated in Shwachman-Diamond Syndrome (the yeast SBDS ortholog is SDO1); null mutation suppresses cdc13-1 temperature sensitivity; protein abundance increases in response to DNA replication stress","termid":"PBO:0086046"}


id: GO:0043112
data:
  {"annotated_genes":["SJAG_04428","SJAG_01448","SJAG_02619","SJAG_05950","SJAG_03324"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113492,94654,97397,111473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016562"},{"annotations":[98771],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001881"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule metabolic process","termid":"GO:0043170"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01448":null,"SJAG_02619":null,"SJAG_03324":null,"SJAG_04428":null,"SJAG_05950":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"receptor metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"receptor metabolism","type":"exact"}],"termid":"GO:0043112","terms_by_termid":{"GO:0001881":null,"GO:0016562":null}}


id: PBO:0044686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDN and PRKAG1 antisense RNA 1","termid":"PBO:0044686"}


id: PR:O74752
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mas5 gene.","definition_xrefs":["UniProtKB:O74752","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial protein import protein mas5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1734.11","synonyms":[{"name":"Spom972h-mas5","type":"exact"}],"termid":"PR:O74752"}


id: PBO:0064804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory inhibitor subunit 1A pseudogene 1","termid":"PBO:0064804"}


id: GO:0003924
data:
  {"annotated_genes":["SJAG_03732","SJAG_00663","SJAG_02640","SJAG_01769","SJAG_02848","SJAG_04666","SJAG_00923","SJAG_04003","SJAG_02444","SJAG_00231","SJAG_02605","SJAG_01696","SJAG_01655","SJAG_00414","SJAG_02824","SJAG_01391","SJAG_01456","SJAG_04470","SJAG_04509","SJAG_02595","SJAG_05030","SJAG_00226","SJAG_03846","SJAG_03688","SJAG_02384","SJAG_03461","SJAG_04375","SJAG_00906","SJAG_04862","SJAG_00065","SJAG_04157","SJAG_02302","SJAG_02171","SJAG_01851","SJAG_01277","SJAG_00457","SJAG_03371","SJAG_03684","SJAG_00430","SJAG_02856","SJAG_05332","SJAG_00466","SJAG_01379","SJAG_04940","SJAG_01449","SJAG_03676","SJAG_02180","SJAG_03453","SJAG_00031","SJAG_00424","SJAG_01438","SJAG_02265","SJAG_02366","SJAG_02331","SJAG_03137","SJAG_02601","SJAG_03342","SJAG_01774","SJAG_00983","SJAG_02292","SJAG_03374","SJAG_00344","SJAG_04531","SJAG_01558","SJAG_02233","SJAG_04679","SJAG_02353","SJAG_03915","SJAG_00659","SJAG_04343","SJAG_01929","SJAG_01339","SJAG_02684","SJAG_04004","SJAG_02656","SJAG_03072","SJAG_04351"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[83940,84947,85276,85473,85770,86886,87323,88011,88046,88455,88737,88830,88902,89297,89644,89645,89646,89893,90278,90375,90552,92155,93141,93824,93903,93976,94383,94384,94467,95729,95805,96208,96754,96943,97055,97333,97381,97544,98301,98735,98761,98996,99611,99693,100045,100725,101025,101543,102136,102673,103272,103311,103332,103566,103574,104845,104873,105409,105472,105900,106416,106690,106691,106991,107599,107681,108564,108565,108566,109032,110134,112112,112149,112802,113515,113685,114551,114662,114663,114664,115182],"is_not":false,"summary":null,"term":"GO:0003924"},{"annotations":[68411,86883],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003925"},{"annotations":[100778],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061791"},{"annotations":[98879,96053],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990606"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: GTP + H2O = GDP + H+ + phosphate.","definition_xrefs":["PMID:27218782","PMID:26832457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside triphosphate phosphatase 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activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1445143","Reactome:R-HSA-170686","Reactome:R-HSA-8982020","Reactome:R-HSA-8847534","Reactome:R-HSA-203973","Reactome:R-HSA-5333615","Reactome:R-HSA-5389839","Reactome:R-HSA-165055","Reactome:R-HSA-9645598","Reactome:R-HSA-983422","MetaCyc:RXN0-5462","Reactome:R-HSA-428941","Reactome:R-HSA-5694527","Reactome:R-HSA-6814833","Reactome:R-HSA-6807877","Reactome:R-HSA-392133","Reactome:R-HSA-421835","Reactome:R-HSA-9649736","Reactome:R-HSA-2130641","Reactome:R-HSA-392212","Reactome:R-HSA-1458485","Reactome:R-HSA-5665809","Reactome:R-HSA-380979","Reactome:R-HSA-5638006","Reactome:R-HSA-8849082","GO:0061745","Reactome:R-HSA-164381","Reactome:R-HSA-432707","Reactome:R-HSA-156923","Reactome:R-HSA-2130725","Reactome:R-HSA-8854604","Reactome:R-HSA-5389842","Reactome:R-HSA-418574","Reactome:R-HSA-5658231","Reactome:R-HSA-8982025","Reactome:R-HSA-5672017","Reactome:R-HSA-8854255","Reactome:R-HSA-8854173","Reactome:R-HSA-5419279","Reactome:R-HSA-8868661","Reactome:R-HSA-5419273","Reactome:R-HSA-555065","Reactome:R-HSA-8847883","Reactome:R-HSA-8854329","Reactome:R-HSA-167415","Reactome:R-HSA-8982021","Reactome:R-HSA-8854612","Reactome:R-HSA-9018826","RHEA:19669","Reactome:R-HSA-9018814","Reactome:R-HSA-5623513","Reactome:R-HSA-8981353","Reactome:R-HSA-170685","Reactome:R-HSA-418582","Reactome:R-HSA-170666","Reactome:R-HSA-2584246","Reactome:R-HSA-177501","Reactome:R-HSA-9640195"],"synonyms":[{"name":"ARF small monomeric GTPase activity","type":"narrow"},{"name":"GTPase activity, coupled","type":"related"},{"name":"RHEB small monomeric GTPase activity","type":"narrow"},{"name":"Rab small monomeric GTPase activity","type":"narrow"},{"name":"Ran small monomeric GTPase activity","type":"narrow"},{"name":"Ras small monomeric GTPase activity","type":"narrow"},{"name":"Rho small monomeric GTPase activity","type":"narrow"},{"name":"Sar small monomeric GTPase activity","type":"narrow"},{"name":"dynamin GTPase activity","type":"narrow"},{"name":"heterotrimeric G-protein GTPase activity","type":"narrow"},{"name":"heterotrimeric G-protein GTPase, alpha-subunit","type":"related"},{"name":"heterotrimeric G-protein GTPase, beta-subunit","type":"related"},{"name":"heterotrimeric G-protein GTPase, gamma-subunit","type":"related"},{"name":"hydrolase activity, acting on acid anhydrides, acting on GTP, involved in cellular and subcellular movement","type":"broad"},{"name":"protein-synthesizing GTPase activity","type":"narrow"},{"name":"protein-synthesizing GTPase activity, elongation","type":"narrow"},{"name":"protein-synthesizing GTPase activity, initiation","type":"narrow"},{"name":"protein-synthesizing GTPase activity, termination","type":"narrow"},{"name":"signal-recognition-particle GTPase activity","type":"narrow"},{"name":"small monomeric GTPase activity","type":"narrow"},{"name":"tubulin GTPase activity","type":"narrow"}],"termid":"GO:0003924","terms_by_termid":{"GO:0003924":null,"GO:0003925":null,"GO:0061791":null,"GO:1990606":null}}


id: PBO:0061151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMNAT1 pseudogene 3","termid":"PBO:0061151"}


id: PBO:0065881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB31, member RAS oncogene family","termid":"PBO:0065881"}


id: PBO:0043958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin gamma C","termid":"PBO:0043958"}


id: PBO:0005375
data:
  {"annotated_genes":["SJAG_MIT04","SJAG_MIT20","SJAG_MIT13"],"annotation_feature_type":"gene","cv_annotations":{"EC numbers":[{"annotations":[56040,56051,56060],"is_not":false,"summary":null,"term":"PBO:0005375"}]},"cv_name":"EC numbers","gene_count":3,"genes_by_uniquename":{"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"is_obsolete":false,"name":"1.9.3.1","termid":"PBO:0005375","terms_by_termid":{"PBO:0005375":null}}


id: PBO:0052644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 12","termid":"PBO:0052644"}


id: PBO:0086593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; expression downregulated by treatment with 8-methoxypsoralen plus UVA irradiation; not an essential gene; YGR273C has a paralog, YMR295C, that arose from the whole genome duplication","termid":"PBO:0086593"}


id: PBO:0068952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 196, pseudogene","termid":"PBO:0068952"}


id: PBO:0110344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colitis associated IRF1 antisense regulator of intestinal homeostasis","termid":"PBO:0110344"}


id: PBO:0082510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the COP9 signalosome (CSN) complex; acts as an isopeptidase in cleaving the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; metalloendopeptidase involved in the adaptation to pheromone signaling; involved in modulation of genes controlling amino acid and lipid metabolism, and ergosterol biosynthesis","termid":"PBO:0082510"}


id: PBO:0044768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 50 pseudogene 2","termid":"PBO:0044768"}


id: PBO:0081493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF385D antisense RNA 1","termid":"PBO:0081493"}


id: PBO:0002774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vigtamin H transporter (predicted)","termid":"PBO:0002774"}


id: PBO:0061446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 3 group C member 1","termid":"PBO:0061446"}


id: PBO:0083047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deoxyuridine triphosphate diphosphatase (dUTPase); catalyzes hydrolysis of dUTP to dUMP and PPi, thereby preventing incorporation of uracil into DNA during replication; critical for the maintenance of genetic stability; also has diphosphatase activity on deoxyinosine triphosphate; human homolog DUT allows growth of yeast haploid dut1 null mutant after sporulation of heterozygous diploid","termid":"PBO:0083047"}


id: PBO:0054336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1729","termid":"PBO:0054336"}


id: PATO:0001801
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Dehydrated"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"water composition","termid":"PATO:0001800"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased water composition","synonyms":[{"name":"dehydrated","type":"exact"},{"name":"dry","type":"related"}],"termid":"PATO:0001801"}


id: FYPO:0007306
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 12 of histone H4 in centromeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation during vegetative growth","termid":"FYPO:0002365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"increased histone H4-K12 acetylation at centromere during vegetative growth","synonyms":[{"name":"increased centromeric histone H4K12 acetylation during vegetative growth","type":"exact"},{"name":"increased histone H4-K12 acetylation at centromere during mitotic cell cycle","type":"related"},{"name":"increased histone H4K12 acetylation at centromere during vegetative growth","type":"exact"}],"termid":"FYPO:0007306"}


id: GO:0019065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.","definition_xrefs":["GOC:bf","GOC:jl","ISBN:0781702534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor-mediated endocytosis","termid":"GO:0006898"},{"relation_name":"is_a","term_name":"endocytosis involved in viral entry into host cell","termid":"GO:0075509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192","GO:0051179"],"is_obsolete":false,"name":"receptor-mediated endocytosis of virus by host cell","synonyms":[{"name":"receptor mediated endocytosis by host of virus particle","type":"exact"},{"name":"receptor mediated endocytosis of virus by host","type":"exact"},{"name":"receptor mediated endocytosis of virus particle by host","type":"exact"},{"name":"receptor-mediated endocytosis of virus by host","type":"exact"},{"name":"viral entry into host cell via receptor-mediated endocytosis","type":"related"},{"name":"viral receptor mediated endocytosis","type":"exact"},{"name":"virus receptor-mediated endocytosis by host","type":"exact"}],"termid":"GO:0019065"}


id: PBO:0044191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chymotrypsin like","termid":"PBO:0044191"}


id: PBO:0080602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 36","termid":"PBO:0080602"}


id: FYPO:0006859
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of DNA replication is decreased in telomeric regions.","definition_xrefs":["PomBase:mah","PMID:30796050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic DNA replication","termid":"FYPO:0001343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000631","FYPO:0001320","FYPO:0000293","FYPO:0000002"],"is_obsolete":false,"name":"decreased mitotic DNA replication at telomere","synonyms":[{"name":"decreased DNA replication at telomere during mitotic cell cycle","type":"related"},{"name":"decreased mitotic DNA replication at telomere during vegetative growth","type":"exact"},{"name":"reduced mitotic DNA replication at telomere","type":"exact"}],"termid":"FYPO:0006859"}


id: GO:0032290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the wraps of cell membrane that constitute myelin are laid down around an axon by Schwann cells in the peripheral nervous system.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myelin assembly","termid":"GO:0032288"},{"relation_name":"part_of","term_name":"myelination in peripheral nervous system","termid":"GO:0022011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"peripheral nervous system myelin formation","synonyms":[{"name":"myelin formation in peripheral nervous system","type":"exact"},{"name":"peripheral nervous system myelin sheath formation","type":"exact"}],"termid":"GO:0032290"}


id: GO:2000260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of blood coagulation, common pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of blood coagulation","termid":"GO:0030193"},{"relation_name":"is_a","term_name":"regulation of protein activation cascade","termid":"GO:2000257"},{"relation_name":"regulates","term_name":"blood coagulation, common pathway","termid":"GO:0072377"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051604","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of blood coagulation, common pathway","termid":"GO:2000260"}


id: PBO:0040831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BIRC6 antisense RNA 1","termid":"PBO:0040831"}


id: GO:0003998
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an acyl phosphate + H2O = a carboxylate + phosphate.","definition_xrefs":["EC:3.6.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"acylphosphatase activity","secondary_identifiers":["MetaCyc:ACYLPHOSPHATASE-RXN","RHEA:14965"],"synonyms":[{"name":"1,3-diphosphoglycerate phosphatase activity","type":"related"},{"name":"GP 1-3","type":"related"},{"name":"Ho 1-3","type":"related"},{"name":"acetic phosphatase activity","type":"related"},{"name":"acetylphosphatase activity","type":"related"},{"name":"acylphosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0003998"}


id: PBO:0060569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 5, pseudogene","termid":"PBO:0060569"}


id: PBO:0052486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 1","termid":"PBO:0052486"}


id: PBO:0034508
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_meiotic_sister_chromatid_segregation","termid":"PBO:0034508"}


id: GO:1903307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of regulated secretory pathway.","definition_xrefs":["PMID:12526776","GOC:TermGenie","GO_REF:0000058","GOC:PARL","GOC:pad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of exocytosis","termid":"GO:0045921"},{"relation_name":"is_a","term_name":"regulation of regulated secretory pathway","termid":"GO:1903305"},{"relation_name":"positively_regulates","term_name":"regulated exocytosis","termid":"GO:0045055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"positive regulation of regulated secretory pathway","synonyms":[{"name":"activation of regulated secretory pathway","type":"narrow"},{"name":"up regulation of regulated secretory pathway","type":"exact"},{"name":"up-regulation of regulated secretory pathway","type":"exact"},{"name":"upregulation of regulated secretory pathway","type":"exact"}],"termid":"GO:1903307"}


id: PBO:0005575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf15","termid":"PBO:0005575"}


id: GO:0048080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of a pattern of pigment in the cuticle of an organism.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cuticle pigmentation","termid":"GO:0048079"},{"relation_name":"is_a","term_name":"negative regulation of developmental pigmentation","termid":"GO:0048086"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"cuticle pigmentation","termid":"GO:0048067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cuticle pigmentation","synonyms":[{"name":"down regulation of cuticle pigmentation","type":"exact"},{"name":"down-regulation of cuticle pigmentation","type":"exact"},{"name":"downregulation of cuticle pigmentation","type":"exact"},{"name":"inhibition of cuticle pigmentation","type":"narrow"}],"termid":"GO:0048080"}


id: PBO:0090651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Coa3","termid":"PBO:0090651"}


id: GO:0048626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a myoblast in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["GOC:dph","CL:0000056","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"myoblast fate commitment","termid":"GO:0048625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast fate specification","termid":"GO:0048626"}


id: PBO:0078477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile (anticodon AAT) 1-1","termid":"PBO:0078477"}


id: PBO:0111765
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HEAT repeat","termid":"PBO:0111765"}


id: GO:0097411
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by hypoxia-inducible factor (HIF1) in response to lowered oxygen levels (hypoxia). Under hypoxic conditions, the oxygen-sensitive alpha-subunit of hypoxia-inducible factor (HIF)-1 dimerizes with a HIF1-beta subunit (also called ARNT or aryl-hydrocarbon-receptor nuclear translocator), translocates to the nucleus and activates transcription of genes whose products participate in responding to hypoxia.","definition_xrefs":["GOC:bf","PMID:26579469","PMID:16887934","GOC:jc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"},{"relation_name":"part_of","term_name":"cellular response to hypoxia","termid":"GO:0071456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"hypoxia-inducible factor-1alpha signaling pathway","synonyms":[{"name":"HIF1alpha pathway","type":"exact"},{"name":"hypoxia-inducible factor signaling","type":"exact"},{"name":"hypoxia-inducible factor-1alpha signalling pathway","type":"exact"}],"termid":"GO:0097411"}


id: GO:0009169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside monophosphate catabolic process","termid":"GO:0009128"},{"relation_name":"is_a","term_name":"ribonucleoside monophosphate catabolic process","termid":"GO:0009158"},{"relation_name":"is_a","term_name":"purine ribonucleoside monophosphate metabolic process","termid":"GO:0009167"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"purine ribonucleoside monophosphate catabolic process","synonyms":[{"name":"purine ribonucleoside monophosphate breakdown","type":"exact"},{"name":"purine ribonucleoside monophosphate catabolism","type":"exact"},{"name":"purine ribonucleoside monophosphate degradation","type":"exact"}],"termid":"GO:0009169"}


id: PBO:0063094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"par-3 family cell polarity regulator","termid":"PBO:0063094"}


id: PBO:0067386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 491, pseudogene","termid":"PBO:0067386"}


id: PBO:0041478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 71","termid":"PBO:0041478"}


id: PBO:0040149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASH1L antisense RNA 1","termid":"PBO:0040149"}


id: FYPO:0005668
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cyclic AMP (cAMP). Cells stop growing (and may die) at a concentration of cAMP that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to phosphate (Pi)","termid":"FYPO:0008229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to cAMP","synonyms":[{"name":"hypersensitive to cAMP","type":"exact"},{"name":"sensitive to cAMP during mitotic cell cycle","type":"related"},{"name":"sensitive to cAMP during vegetative growth","type":"exact"},{"name":"sensitive to cyclic AMP","type":"exact"}],"termid":"FYPO:0005668"}


id: GO:0141050
data:
  {"annotated_genes":["SJAG_04186","SJAG_04039","SJAG_03844","SJAG_01075","SJAG_00581"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100316,105610,108270],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031078"},{"annotations":[100317],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990162"},{"annotations":[105611,100318],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032129"},{"annotations":[86087],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032041"},{"annotations":[86088],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140765"},{"annotations":[110589,100319],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046969"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H3 N6-acetyl-L-lysine + H2O = histone H3 L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone H3.","definition_xrefs":["PMID:12590135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deacetylase activity","termid":"GO:0004407"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00581":null,"SJAG_01075":null,"SJAG_03844":null,"SJAG_04039":null,"SJAG_04186":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0033558"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016787","GO:0033558","GO:0016810","GO:0003674","GO:0140096","GO:0003824","GO:0019213"],"is_obsolete":false,"name":"histone H3K deacetylase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0141050","terms_by_termid":{"GO:0031078":null,"GO:0032041":null,"GO:0032129":null,"GO:0046969":null,"GO:0140765":null,"GO:1990162":null}}


id: PBO:0110457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor for ribosome biogenesis Sfp1","termid":"PBO:0110457"}


id: PBO:0063541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylethanolamine binding protein 1","termid":"PBO:0063541"}


id: GO:0009536
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.","definition_xrefs":["ISBN:0198547684","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"plastid","secondary_identifiers":["Wikipedia:Plastid"],"termid":"GO:0009536"}


id: PBO:0026884
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_chromatin_at_RNA_polymerase_II_promoter_during_nitrogen_starvation","termid":"PBO:0026884"}


id: FYPO:0001056
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which L-arginine import into the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal amino acid import","termid":"FYPO:0001596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"normal arginine import","synonyms":[{"name":"normal L-arginine import","type":"exact"},{"name":"normal L-arginine import across plasma membrane","type":"exact"},{"name":"normal L-arginine uptake","type":"exact"},{"name":"normal arginine import during mitotic cell cycle","type":"related"},{"name":"normal arginine import during vegetative growth","type":"exact"},{"name":"normal arginine import into cell","type":"exact"}],"termid":"FYPO:0001056"}


id: PBO:0060416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-alpha-acetyltransferase 60, NatF catalytic subunit","termid":"PBO:0060416"}


id: FYPO:0003553
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of an RNA catabolic process is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"decreased RNA level","termid":"FYPO:0000826"},{"relation_name":"is_a","term_name":"abnormal RNA catabolic process","termid":"FYPO:0003551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased RNA catabolic process","synonyms":[{"name":"increased RNA breakdown","type":"exact"},{"name":"increased RNA catabolism","type":"exact"},{"name":"increased RNA degradation","type":"exact"}],"termid":"FYPO:0003553"}


id: PBO:0070997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L19 pseudogene 21","termid":"PBO:0070997"}


id: PBO:0113070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of UDP-GlcNAc transferase; required for second step of dolichyl-linked oligosaccharide synthesis; anchors catalytic subunit Alg13p to ER membrane; localizes to the peroxisome; similar to bacterial and human glycosyltransferases; both human homologs ALG13 and ALG14 are required to complement yeast alg14 mutant; mutations of human ALG14 cause congenital myasthenic syndrome","termid":"PBO:0113070"}


id: GO:0070868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin and contributes to chromatin silencing.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete heterochromatin organization involved in chromatin silencing (obsolete GO:0070868)","synonyms":[{"name":"heterochromatin organisation involved in chromatin silencing","type":"exact"}],"termid":"GO:0070868"}


id: GO:0008459
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 6'-sulfate.","definition_xrefs":["EC:2.8.2.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chondroitin sulfotransferase activity","termid":"GO:0034481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016782","GO:0003824"],"is_obsolete":false,"name":"chondroitin 6-sulfotransferase activity","secondary_identifiers":["Reactome:R-HSA-2018682","Reactome:R-HSA-3595175","KEGG_REACTION:R02181","MetaCyc:CHONDROITIN-6-SULFOTRANSFERASE-RXN","RHEA:11108"],"synonyms":[{"name":"3'-phosphoadenosine 5'-phosphosulfate (PAPS):chondroitin sulfate sulfotransferase activity","type":"related"},{"name":"3'-phosphoadenylyl-sulfate:chondroitin 6'-sulfotransferase activity","type":"related"},{"name":"chondroitin 6-O-sulfotransferase activity","type":"related"},{"name":"chondroitin 6-sulphotransferase activity","type":"exact"},{"name":"terminal 6-sulfotransferase activity","type":"related"}],"termid":"GO:0008459"}


id: PBO:0002469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminotransferase class-III, unknown specificty","termid":"PBO:0002469"}


id: PBO:0048893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family like 13, pseudogene","termid":"PBO:0048893"}


id: CHEBI:28938
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ammonium","termid":"CHEBI:28938"}


id: GO:0106150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of zearalenone, a mycotoxin produced by several Fusarium species, is most commonly found as a contaminant in stored grain and has chronic estrogenic effects on mammals.","definition_xrefs":["GOC:ach","PMID:16517624","PMID:20578001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macrolide biosynthetic process","termid":"GO:0033068"},{"relation_name":"is_a","term_name":"mycotoxin biosynthetic process","termid":"GO:0043386"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"zearalenone biosynthetic process","termid":"GO:0106150"}


id: GO:0030368
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with any member of the interleukin-17 family of cytokines and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:jl","GOC:add","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"interleukin-17 receptor activity","secondary_identifiers":["Wikipedia:Interleukin-17_receptor"],"synonyms":[{"name":"IL-17 receptor activity","type":"exact"},{"name":"IL-17R","type":"exact"}],"termid":"GO:0030368"}


id: GO:0051296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that set the alignment of meiotic spindle relative to other cellular structures.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of spindle orientation","termid":"GO:0051294"},{"relation_name":"is_a","term_name":"establishment of meiotic spindle localization","termid":"GO:0051295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0007163","GO:0000226","GO:0007049","GO:0007010"],"is_obsolete":false,"name":"establishment of meiotic spindle orientation","synonyms":[{"name":"establishment of spindle orientation during meiosis","type":"related"},{"name":"establishment of spindle orientation involved in meiotic cell cycle","type":"exact"},{"name":"meiotic spindle orientation","type":"exact"},{"name":"orienting of meiotic spindle","type":"exact"}],"termid":"GO:0051296"}


id: PBO:0087318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-methylmethionine-homocysteine methyltransferase; functions along with Sam4p in the conversion of S-adenosylmethionine (AdoMet) to methionine to control the methionine/AdoMet ratio","termid":"PBO:0087318"}


id: GO:0060381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of single-stranded telomeric DNA binding.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of single-stranded telomeric DNA binding","termid":"GO:0060380"},{"relation_name":"is_a","term_name":"positive regulation of telomeric DNA binding","termid":"GO:1904744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of single-stranded telomeric DNA binding","synonyms":[{"name":"positive regulation of telomeric ssDNA binding","type":"exact"}],"termid":"GO:0060381"}


id: PBO:0005179
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spinocerebellar ataxia","termid":"PBO:0005179"}


id: GO:0062143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-propargylglycine (Pra). L-propargylglycine is an antibiotic produced by Streptomyces bacteria.","definition_xrefs":["PMID:30867596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terminal acetylenic compound biosynthetic process","termid":"GO:0120237"},{"relation_name":"is_a","term_name":"L-amino acid biosynthetic process","termid":"GO:0170034"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid biosynthetic process","termid":"GO:0170043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"L-propargylglycine biosynthetic process","termid":"GO:0062143"}


id: GO:1902703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of hexose to butan-1-ol.","definition_xrefs":["PMID:18727018","GO_REF:0000093","GOC:TermGenie","PMID:19539744","GOC:mengo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete hexose catabolic process to butan-1-ol (obsolete GO:1902703)","synonyms":[{"name":"hexose breakdown to butan-1-ol","type":"exact"},{"name":"hexose catabolic process to 1-butanol","type":"exact"},{"name":"hexose catabolic process to butanol","type":"exact"},{"name":"hexose catabolism to butan-1-ol","type":"exact"},{"name":"hexose degradation to butan-1-ol","type":"exact"},{"name":"solventogenesis","type":"broad"}],"termid":"GO:1902703"}


id: FYPO:0006257
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the duration of prophase of mitosis normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle phase","termid":"FYPO:0002740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal duration of mitotic prophase","synonyms":[{"name":"normal duration of mitotic prophase during vegetative growth","type":"exact"},{"name":"normal duration of prophase during mitotic cell cycle","type":"exact"},{"name":"normal duration of prophase of mitosis","type":"exact"}],"termid":"FYPO:0006257"}


id: PBO:0055524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2958","termid":"PBO:0055524"}


id: FYPO:0003156
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the monopolar growth of a cell is normal (i.e. indistinguishable from wild type in timing, extent, rate, etc.) in the vegetative growth phase of the life cycle.","definition_xrefs":["PMID:24146635","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell growth","termid":"FYPO:0002085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal monopolar cell growth","synonyms":[{"name":"normal monopolar vegetative cell growth","type":"exact"}],"termid":"FYPO:0003156"}


id: GO:0045155
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the directed movement of electrons from the CoQH2-cytochrome c reductase complex and the cytochrome c oxidase complex.","definition_xrefs":["GOC:ai","ISBN:0716731363"],"gene_count":0,"genotype_count":0,"name":"obsolete electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity (obsolete GO:0045155)","synonyms":[{"name":"cytochrome","type":"related"},{"name":"cytochrome c","type":"narrow"}],"termid":"GO:0045155"}


id: GO:0102566
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-oleoylglycerone 3-phosphate + NADPH + H+ = 1-oleoyl-sn-glycero-3-phosphate + NADP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-acyl dihydroxyacetone phosphate reductase activity (obsolete GO:0102566)","termid":"GO:0102566"}


id: GO:0160175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process in which a somatic muscle attaches to the chitin-based cuticle. In insects, this may occur via a specialized epithelial cell adherence to the chitinous extracellular matrix and to muscle cells through their basement membrane.","definition_xrefs":["PMID:35675426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic muscle development","termid":"GO:0007525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"somatic muscle attachment to chitin-based cuticle","termid":"GO:0160175"}


id: GO:0070662
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a mast cell population by cell division.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte proliferation","termid":"GO:0070661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mast cell proliferation","termid":"GO:0070662"}


id: PBO:0003627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinamide riboside kinase (predicted)","termid":"PBO:0003627"}


id: PBO:0002302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin fold protein Plp1 (predicted)","termid":"PBO:0002302"}


id: PBO:0086520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved across S. cerevisiae strains; partially overlaps dubious ORF YFL015W-A; YFL015C is not an essential gene","termid":"PBO:0086520"}


id: GO:0045974
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process, mediated by small non-coding RNAs, that modulates the frequency, rate or extent that mRNAs are effectively translated into protein.","definition_xrefs":["GOC:dph","GOC:go_curators","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translation","termid":"GO:0006417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of translation, ncRNA-mediated","termid":"GO:0045974"}


id: PBO:0065601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleiotrophin","termid":"PBO:0065601"}


id: MOD:01595
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Applied Biosystems iTRAQ8plex-114 reagent derivatized residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"iTRAQ8plex-114 reporter+balance reagent acylated residue","termid":"MOD:01535"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter fragment","termid":"MOD:01593"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-114 reporter fragment","synonyms":[{"name":"4-methyl-1-methylidenepiperazin-1-ium","type":"exact"}],"termid":"MOD:01595"}


id: GO:1905568
data:
  {"annotated_genes":["SJAG_00792"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90105],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ferrichrome biosynthetic process.","definition_xrefs":["GOC:al","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amide metabolic process","termid":"GO:0034248"},{"relation_name":"is_a","term_name":"regulation of siderophore biosynthetic process","termid":"GO:1900704"},{"relation_name":"regulates","term_name":"ferrichrome biosynthetic process","termid":"GO:0031169"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"regulation of ferrichrome biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of ferrichrome anabolism","type":"exact"},{"name":"regulation of ferrichrome biosynthesis","type":"exact"},{"name":"regulation of ferrichrome biosynthetic process, peptide formation","type":"narrow"},{"name":"regulation of ferrichrome biosynthetic process, peptide modification","type":"narrow"},{"name":"regulation of ferrichrome formation","type":"exact"},{"name":"regulation of ferrichrome synthesis","type":"exact"}],"termid":"GO:1905568","terms_by_termid":{"GO:1905569":null}}


id: PBO:0083771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential NTPase required for small ribosome subunit synthesis; mediates processing of the 20S pre-rRNA at site D in the cytoplasm but associates only transiently with 43S preribosomes via Rps14p; complex with Rps14 is conserved between humans, yeast, and arches; may be the endonuclease for site D; depletion leads to accumulation of pre-40S ribosomes in 80S-like ribosomes; human TAF9 functionally complements the lethality of the null mutation","termid":"PBO:0083771"}


id: PATO:0002104
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A compositional quality inhering in an bearer by virtue of the bearer's infiltration by leukocytes, local edema and accumulation of plasma proteins.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inflammatory","termid":"PATO:0002104"}


id: PBO:0091912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf8 (frameshifted)","termid":"PBO:0091912"}


id: GO:2000767
data:
  {"annotated_genes":["SJAG_02723","SJAG_01047","SJAG_02043"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84603,102775,113315],"is_not":false,"summary":null,"term":"GO:2000767"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cytoplasmic translation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of translation","termid":"GO:0045727"},{"relation_name":"is_a","term_name":"regulation of cytoplasmic translation","termid":"GO:2000765"},{"relation_name":"positively_regulates","term_name":"cytoplasmic translation","termid":"GO:0002181"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01047":null,"SJAG_02043":null,"SJAG_02723":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0002181"},{"rel_name":"regulates","termid":"GO:0002181"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0002181","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cytoplasmic translation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:2000767","terms_by_termid":{"GO:2000767":null}}


id: PBO:0004713
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tel Two Interacting protein","termid":"PBO:0004713"}


id: PATO:0015006
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array.","definition_xrefs":["GOC:DOS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polymeric","termid":"PATO:0015006"}


id: FYPO:0007465
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein localizes to chromatin over a different spatial extent than normal. The protein may localize to a larger or smaller region than normal, or its localization may be shifted along the length of the chromosome.","definition_xrefs":["PMID:18957202","PomBase:mah","PMID:31615333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"altered spatial extent of protein localization to chromatin","synonyms":[{"name":"abnormal spatial extent of protein localization to chromatin","type":"exact"},{"name":"altered spatial extent of protein localisation to chromatin","type":"exact"},{"name":"altered spatial extent of protein localization to chromatin during mitotic cell cycle","type":"related"},{"name":"altered spatial extent of protein localization to chromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0007465"}


id: PBO:0004779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial GrpE domain chaperone protein (predicted)","termid":"PBO:0004779"}


id: GO:0004744
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: all-trans-retinal = 11-cis-retinal.","definition_xrefs":["PMID:21447403"],"gene_count":0,"genotype_count":0,"name":"obsolete retinal isomerase activity (obsolete GO:0004744)","secondary_identifiers":["KEGG_REACTION:R02126","MetaCyc:RETINAL-ISOMERASE-RXN"],"synonyms":[{"name":"all-trans-retinal 11-cis-trans-isomerase activity","type":"related"},{"name":"retinene isomerase activity","type":"related"},{"name":"retinoid isomerase activity","type":"broad"}],"termid":"GO:0004744"}


id: PBO:0059783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 9","termid":"PBO:0059783"}


id: PR:Q9P7R9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pre-mRNA-splicing factor SYF1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03889","PANTHER:PTHR11246:SF5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor cwf3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC211.02c","secondary_identifiers":["UniProtKB:Q9P7R9"],"synonyms":[{"name":"Spom972h-XAB2","type":"exact"},{"name":"complexed with cdc5 protein 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7R9"}


id: GO:0044683
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the overall reaction: methyl-Co(III) methylated-thiol-specific corrinoid protein + coenzyme M = Co(I) methylated--thiol-specific corrinoid protein + methyl-CoM.","definition_xrefs":["MetaCyc:RXN-8125","PMID:9371433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016741","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"methylthiol:coenzyme M methyltransferase activity","secondary_identifiers":["RHEA:32667","EC:2.1.1.251"],"synonyms":[{"name":"methylthiol:coenzyme M methyl transferase activity","type":"exact"}],"termid":"GO:0044683"}


id: MOD:01258
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["Unimod:314#C","PubMed:9448752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methylmaleimide derivatized residue","termid":"MOD:00625"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-methylmaleimide - site C","synonyms":[{"name":"Nmethylmaleimide","type":"related"}],"termid":"MOD:01258"}


id: GO:1904042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cystathionine beta-synthase activity.","definition_xrefs":["GO_REF:0000059","PMID:24416422","GOC:BHF","GOC:TermGenie","GOC:hal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lyase activity","termid":"GO:0051350"},{"relation_name":"is_a","term_name":"regulation of cystathionine beta-synthase activity","termid":"GO:1904041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cystathionine beta-synthase activity","synonyms":[{"name":"down regulation of L-serine hydro-lyase (adding homocysteine)","type":"exact"},{"name":"down regulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)","type":"exact"},{"name":"down regulation of beta-thionase activity","type":"exact"},{"name":"down regulation of cystathionine beta-synthase activity","type":"exact"},{"name":"down regulation of methylcysteine synthase activity","type":"exact"},{"name":"down regulation of serine sulfhydrase activity","type":"exact"},{"name":"down regulation of serine sulfhydrylase activity","type":"exact"},{"name":"down-regulation of L-serine hydro-lyase (adding homocysteine)","type":"exact"},{"name":"down-regulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)","type":"exact"},{"name":"down-regulation of beta-thionase activity","type":"exact"},{"name":"down-regulation of cystathionine beta-synthase activity","type":"exact"},{"name":"down-regulation of methylcysteine synthase activity","type":"exact"},{"name":"down-regulation of serine sulfhydrase activity","type":"exact"},{"name":"down-regulation of serine sulfhydrylase activity","type":"exact"},{"name":"downregulation of L-serine hydro-lyase (adding homocysteine)","type":"exact"},{"name":"downregulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)","type":"exact"},{"name":"downregulation of beta-thionase activity","type":"exact"},{"name":"downregulation of cystathionine beta-synthase activity","type":"exact"},{"name":"downregulation of methylcysteine synthase activity","type":"exact"},{"name":"downregulation of serine sulfhydrase activity","type":"exact"},{"name":"downregulation of serine sulfhydrylase activity","type":"exact"},{"name":"inhibition of L-serine hydro-lyase (adding homocysteine)","type":"narrow"},{"name":"inhibition of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)","type":"narrow"},{"name":"inhibition of beta-thionase activity","type":"narrow"},{"name":"inhibition of cystathionine beta-synthase activity","type":"narrow"},{"name":"inhibition of methylcysteine synthase activity","type":"narrow"},{"name":"inhibition of serine sulfhydrase activity","type":"narrow"},{"name":"inhibition of serine sulfhydrylase activity","type":"narrow"},{"name":"negative regulation of L-serine hydro-lyase (adding homocysteine)","type":"exact"},{"name":"negative regulation of L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)","type":"exact"},{"name":"negative regulation of beta-thionase activity","type":"exact"},{"name":"negative regulation of methylcysteine synthase activity","type":"exact"},{"name":"negative regulation of serine sulfhydrase activity","type":"exact"},{"name":"negative regulation of serine sulfhydrylase activity","type":"exact"}],"termid":"GO:1904042"}


id: PBO:0045162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal intermediate chain 2","termid":"PBO:0045162"}


id: PBO:0044035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSPG4 pseudogene 4 Y-linked","termid":"PBO:0044035"}


id: GO:0047174
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: caffeoyl-CoA + putrescine = N-caffeoylputrescine + CoA + H+.","definition_xrefs":["RHEA:12436","EC:2.3.1.138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acyltransferase activity","termid":"GO:0016410"},{"relation_name":"is_a","term_name":"hydroxycinnamoyltransferase activity","termid":"GO:0050734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"putrescine N-hydroxycinnamoyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01944","MetaCyc:2.3.1.138-RXN"],"synonyms":[{"name":"PHT","type":"related"},{"name":"caffeoyl-CoA putrescine N-caffeoyl transferase activity","type":"related"},{"name":"caffeoyl-CoA:putrescine N-(3,4-dihydroxycinnamoyl)transferase activity","type":"related"},{"name":"hydroxycinnamoyl-CoA:putrescine hydroxycinnamoyltransferase activity","type":"related"},{"name":"putrescine hydroxycinnamoyl transferase activity","type":"related"},{"name":"putrescine hydroxycinnamoyltransferase activity","type":"related"}],"termid":"GO:0047174"}


id: GO:0005739
data:
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id: MOD:00249
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks two L-cysteine residues to form L-cysteine thiazole-4-carboxylic acid.","definition_xrefs":["RESID:AA0244","PubMed:1880060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cysteine thiazole-4-carboxylic acid","synonyms":[{"name":"2-[(1S)-1-amino-2-sulfanylethyl]-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"2-[1-azanyl-2-sulfanylethyl]-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Thiazole-4-carboxylic acid (Cys-Cys)","type":"exact"},{"name":"L-cysteine thiazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:00249"}


id: PBO:0089855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S15","termid":"PBO:0089855"}


id: PBO:0059583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylthioadenosine phosphorylase","termid":"PBO:0059583"}


id: FYPO:0001931
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the regulation of the mitotic cell cycle in response to gamma radiation is abnormal. Normally, cell cycle progression is slowed or arrested transiently following exposure to gamma radiation. The most common abnormality is for the cell cycle to progress as in the absence of gamma radiation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular response to gamma radiation","termid":"FYPO:0001930"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle regulation during cellular response to ionizing radiation","termid":"FYPO:0003489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000298","FYPO:0001985","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal mitotic cell cycle regulation during cellular response to gamma radiation","synonyms":[{"name":"abnormal mitotic cell cycle delay following gamma radiation","type":"exact"},{"name":"abnormal mitotic cell cycle regulation during cellular response to gamma radiation during vegetative growth","type":"exact"},{"name":"abnormal mitotic cell cycle regulation in response to gamma radiation","type":"exact"}],"termid":"FYPO:0001931"}


id: PBO:0046321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enolase 1 pseudogene 2","termid":"PBO:0046321"}


id: PBO:0045188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJB6 pseudogene 1","termid":"PBO:0045188"}


id: SO:0001864
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A DNA motif to which the S. pombe Sap1 protein binds. The consensus sequence is 5'-TARGCAGNTNYAACGMG-3'; it is found at the mating type locus, where it is important for mating type switching, and at replication fork barriers in rDNA repeats.","definition_xrefs":["PMID:7651412","PMID:16166653"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sap1_recognition_motif","synonyms":[{"name":"Sap1 recognitions site","type":"exact"}],"termid":"SO:0001864"}


id: PBO:0036321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CORVET complex WD repeat/ ubiquitin-protein ligase E3 subunit Vps8 (predicted)","termid":"PBO:0036321"}


id: GO:0030562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Specifies the site of 2'-O-ribose methylation in an rRNA molecule by base pairing with a short sequence around the target residue.","definition_xrefs":["GOC:mah","PMID:12457565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA modification guide activity","termid":"GO:0030556"},{"relation_name":"is_a","term_name":"RNA 2'-O-ribose methylation guide activity","termid":"GO:0030561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003723","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"rRNA 2'-O-ribose methylation guide activity","termid":"GO:0030562"}


id: GO:0120320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The myosin-based contraction and retraction of a lateral pseudopodium.","definition_xrefs":["GOC:pf","GOC:krc","PMID:17623773","PMID:12953059","PMID:15483055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudopodium retraction","termid":"GO:0031270"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lateral pseudopodium retraction","synonyms":[{"name":"lateral pseudopodium suppression","type":"related"}],"termid":"GO:0120320"}


id: PBO:0083160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps the verified gene CAF20","termid":"PBO:0083160"}


id: GO:0042198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving nylon, a polymer where the main polymer chain comprises recurring amide groups; these compounds are generally formed from combinations of diamines, diacids and amino acids.","definition_xrefs":["UniProtKB-KW:KW-0549"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nylon metabolic process","synonyms":[{"name":"nylon metabolism","type":"exact"}],"termid":"GO:0042198"}


id: PBO:0060813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nebulin","termid":"PBO:0060813"}


id: PBO:0043487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin N-terminal domain containing 1","termid":"PBO:0043487"}


id: GO:0031140
data:
  {"annotated_genes":["SJAG_03735","SJAG_00781"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94503],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031141"},{"annotations":[111757],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031142"}]},"cv_name":"biological_process","definition":"The process in which a cell initiates conjugation with cellular fusion upon starvation for one or more nutrients.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"induction of conjugation with cellular fusion","termid":"GO:0010514"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00781":null,"SJAG_03735":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0000747"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0000747"}],"interesting_parent_ids":["GO:0008150","GO:0000747"],"is_obsolete":false,"name":"induction of conjugation upon nutrient starvation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031140","terms_by_termid":{"GO:0031141":null,"GO:0031142":null}}


id: GO:0102978
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxy-2,5-dimethylfuran-3-one + NADP = 4-hydroxy-5-methyl-2-methylenefuran-3-one + NADPH + H+.","definition_xrefs":["EC:1.3.1.105","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"furaneol oxidoreductase activity","secondary_identifiers":["MetaCyc:RXN-9563","RHEA:39111"],"termid":"GO:0102978"}


id: GO:0008774
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetaldehyde + CoA + NAD+ = acetyl-CoA + NADH + H+.","definition_xrefs":["EC:1.2.1.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"acetaldehyde dehydrogenase (acetylating) activity","secondary_identifiers":["MetaCyc:ACETALD-DEHYDROG-RXN","RHEA:23288"],"synonyms":[{"name":"ADA","type":"related"},{"name":"DmpF","type":"related"},{"name":"acetaldehyde:NAD+ oxidoreductase (CoA-acetylating)","type":"related"},{"name":"acylating acetaldehyde dehydrogenase activity","type":"related"},{"name":"aldehyde dehydrogenase (acylating) activity","type":"related"}],"termid":"GO:0008774"}


id: PR:O74880
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An mRNA cap guanine-N7 methyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12189:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cap guanine-N7 methyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.10","secondary_identifiers":["UniProtKB:O74880"],"synonyms":[{"name":"SPCC330.10","type":"related"},{"name":"Spom972h-RNMT","type":"exact"},{"name":"mRNA (guanine-N(7)-)-methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"mRNA cap methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74880"}


id: PBO:0054104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1467","termid":"PBO:0054104"}


id: GO:0018900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dichloromethane, a dichlorinated derivative of methane. It is a colorless organic liquid with a sweet, chloroform-like odor, often used as a paint remover.","definition_xrefs":["UM-BBD_pathwayID:dcm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogenated hydrocarbon metabolic process","termid":"GO:0042197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dichloromethane metabolic process","synonyms":[{"name":"dichloromethane metabolism","type":"exact"}],"termid":"GO:0018900"}


id: PBO:0066373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD52 motif containing 1","termid":"PBO:0066373"}


id: PR:000027556
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A.2 phosphorylated form in which the phosphorylation occurs at the Ser or Thr residue within the LLPKx[ST] motif by the mitotic checkpoint serine/threonine-protein kinase BUB1. Example: UniProtKB:P04910, Ser-122, MOD:00046.","definition_xrefs":["PMID:19965387","PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A.2 phosphorylated form","termid":"PR:000027552"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A.2 phosphorylated 2","synonyms":[{"name":"HTA2/Phos:2","type":"exact"}],"termid":"PR:000027556"}


id: MOD:00153
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-histidine residue to 3'-(8alpha-FAD)-L-histidine.","definition_xrefs":["PubMed:241294","PubMed:8076","RESID:AA0144","Unimod:50#H"],"direct_ancestors":[{"relation_name":"is_a","term_name":"FAD modified residue","termid":"MOD:00895"},{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-(8alpha-FAD)-L-histidine","synonyms":[{"name":"(2S)-2-amino-3-(3-[8alpha-riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine]imidazol-4-yl)propanoic acid","type":"exact"},{"name":"3'-(8alpha-FAD)-L-histidine","type":"exact"},{"name":"8alpha-(N(delta)-histidyl)FAD","type":"exact"},{"name":"8alpha-(N3'-histidyl)FAD","type":"exact"},{"name":"8alpha-N1-histidyl FAD","type":"related"},{"name":"FAD","type":"related"},{"name":"Flavin adenine dinucleotide","type":"related"},{"name":"MOD_RES Pros-8alpha-FAD histidine","type":"exact"},{"name":"N(pi)-(8alpha-FAD)-histidine","type":"exact"},{"name":"Np8aFADHis","type":"exact"},{"name":"pros-(8alpha-FAD)-histidine","type":"exact"}],"termid":"MOD:00153"}


id: PBO:0113314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in recycling of membrane transporters from endosome to plasma membrane; plays a role in the multivesicular body sorting pathway; functions and forms a complex with Did2p; recruitment to endosomes is mediated by the Vps2p-Vps24p subcomplex of ESCRT-III; also interacts with Vps4p","termid":"PBO:0113314"}


id: PBO:0029858
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_with_elongated_germ_tube","termid":"PBO:0029858"}


id: GO:0051798
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hair follicle development.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of hair follicle development","termid":"GO:0051797"},{"relation_name":"positively_regulates","term_name":"hair follicle development","termid":"GO:0001942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hair follicle development","synonyms":[{"name":"activation of hair follicle development","type":"narrow"},{"name":"stimulation of hair follicle development","type":"narrow"},{"name":"up regulation of hair follicle development","type":"exact"},{"name":"up-regulation of hair follicle development","type":"exact"},{"name":"upregulation of hair follicle development","type":"exact"}],"termid":"GO:0051798"}


id: PBO:0083491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YDL185W; identified by homology with hemiascomycetous yeast species","termid":"PBO:0083491"}


id: FYPO:0000346
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which spores have an abnormally low volume.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small cell","termid":"FYPO:0000023"},{"relation_name":"is_a","term_name":"abnormal spore morphology","termid":"FYPO:0000348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"small spores","synonyms":[{"name":"decreased spore size","type":"exact"},{"name":"reduced spore size","type":"exact"}],"termid":"FYPO:0000346"}


id: PBO:0055282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2709","termid":"PBO:0055282"}


id: PBO:0087348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sphingolipid alpha-hydroxylase; functions in the alpha-hydroxylation of sphingolipid-associated very long chain fatty acids, has both cytochrome b5-like and hydroxylase/desaturase domains, not essential for growth","termid":"PBO:0087348"}


id: GO:0006988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor (obsolete GO:0006988)","synonyms":[{"name":"unfolded protein response, cleavage of primary transcript encoding UFP-specific transcription factor","type":"exact"}],"termid":"GO:0006988"}


id: PBO:0083369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps verified gene GAL11; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO)","termid":"PBO:0083369"}


id: PBO:0079816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like with PHD and ring finger domains 2 pseudogene 1","termid":"PBO:0079816"}


id: PBO:0109623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM and PDZ domain containing 2B (pseudogene)","termid":"PBO:0109623"}


id: PBO:0016112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA pseudouridine synthase Pus3 (predicted)","termid":"PBO:0016112"}


id: PR:O42648
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nht1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42648"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HMG box-containing protein C10F6.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC10F6.08c","synonyms":[{"name":"Spom972h-nht1","type":"exact"}],"termid":"PR:O42648"}


id: GO:0015640
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of peptidoglycan peptides from one side of a membrane to the other. Peptidoglycan peptides are the oligopeptides found in peptidoglycan networks which cross-link the polysaccharide chains.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidoglycan transmembrane transporter activity","termid":"GO:0015647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"peptidoglycan peptide transmembrane transporter activity","synonyms":[{"name":"murein peptide transporter activity","type":"exact"},{"name":"muropeptide transporter activity","type":"exact"}],"termid":"GO:0015640"}


id: GO:0070062
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.","definition_xrefs":["GOC:BHF","PMID:15908444","PMID:19442504","PMID:19498381","PMID:24009894","GOC:vesicles","PMID:22418571","GOC:mah","PMID:17641064"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular vesicle","termid":"GO:1903561"},{"relation_name":"part_of","term_name":"extracellular space","termid":"GO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005576","GO:0005575"],"is_obsolete":false,"name":"extracellular exosome","synonyms":[{"name":"exosome","type":"exact"},{"name":"extracellular vesicular exosome","type":"exact"}],"termid":"GO:0070062"}


id: PBO:0068802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 39, pseudogene","termid":"PBO:0068802"}


id: PATO:0000742
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000742 low enzyme function value (obsolete PATO:0000742)","termid":"PATO:0000742"}


id: GO:0021576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the hindbrain. This process pertains to the initial formation of a structure from unspecified parts. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions.","definition_xrefs":["GO_REF:0000021","GOC:dph","ISBN:0838580343","GOC:cls","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"hindbrain morphogenesis","termid":"GO:0021575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hindbrain formation","termid":"GO:0021576"}


id: PBO:0066122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras association domain family member 2","termid":"PBO:0066122"}


id: PBO:0049570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B histone pseudogene 7","termid":"PBO:0049570"}


id: GO:0042627
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues.","definition_xrefs":["GOC:jl","PMID:10580165","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma lipoprotein particle","termid":"GO:0034358"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005576","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"chylomicron","secondary_identifiers":["Wikipedia:Chylomicron"],"termid":"GO:0042627"}


id: PBO:0064774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase like 6","termid":"PBO:0064774"}


id: PR:Q9UU83
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pal1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UU83"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein pal1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCP1E11.04c","synonyms":[{"name":"Spom972h-pal1","type":"exact"},{"name":"pears and lemons protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UU83"}


id: PBO:0056816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 9","termid":"PBO:0056816"}


id: GO:1904931
data:
  {"annotated_genes":["SJAG_00399"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99073],"is_not":false,"summary":null,"term":"GO:1904931"}]},"cv_name":"molecular_function","definition":"Binding to an MCM complex.","definition_xrefs":["GOC:TermGenie","PMID:12604790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00399":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"MCM complex binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mini-chromosome maintenance complex binding","type":"exact"}],"termid":"GO:1904931","terms_by_termid":{"GO:1904931":null}}


id: GO:0140912
data:
  {"annotated_genes":["SJAG_05261"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91018],"is_not":false,"summary":null,"term":"GO:0140912"}]},"cv_name":"molecular_function","definition":"Binding to a membrane and increasing its permeability. This may lead to cell membrane lysis and cell content release.","definition_xrefs":["PMID:34496967"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular_function","termid":"GO:0003674"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"membrane destabilizing activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"antimicrobial peptide","type":"broad"}],"termid":"GO:0140912","terms_by_termid":{"GO:0140912":null}}


id: PBO:0059567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1J, pseudogene","termid":"PBO:0059567"}


id: PBO:0038677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA synthetase medium chain family member 3","termid":"PBO:0038677"}


id: PATO:0001450
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"edematous","synonyms":[{"name":"edema","type":"narrow"},{"name":"edemic","type":"exact"},{"name":"oedema","type":"narrow"},{"name":"oedematous","type":"exact"},{"name":"oedemic","type":"exact"}],"termid":"PATO:0001450"}


id: GO:0009202
data:
  {"annotated_genes":["SJAG_00885"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103395],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009216"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate biosynthetic process","termid":"GO:0009142"},{"relation_name":"is_a","term_name":"deoxyribonucleoside triphosphate metabolic process","termid":"GO:0009200"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00885":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"deoxyribonucleoside triphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"deoxyribonucleoside triphosphate anabolism","type":"exact"},{"name":"deoxyribonucleoside triphosphate biosynthesis","type":"exact"},{"name":"deoxyribonucleoside triphosphate formation","type":"exact"},{"name":"deoxyribonucleoside triphosphate synthesis","type":"exact"}],"termid":"GO:0009202","terms_by_termid":{"GO:0009216":null}}


id: PBO:0076295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapse differentiation inducing 1 like","termid":"PBO:0076295"}


id: MOD:00053
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to N-acetyl-L-glutamic acid.","definition_xrefs":["PubMed:6725286","ChEBI:17533","RESID:AA0044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"},{"relation_name":"is_a","term_name":"alpha-amino acetylated residue","termid":"MOD:01458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N-acetyl-L-glutamic acid","synonyms":[{"name":"(2S)-2-(acetamido)pentanedioic acid","type":"exact"},{"name":"2-(acetylamino)pentanedioic acid","type":"exact"},{"name":"2-(acetylazanyl)pentanedioic acid","type":"exact"},{"name":"AcGlu","type":"exact"},{"name":"MOD_RES N-acetylglutamate","type":"exact"},{"name":"N-acetyl-L-glutamic acid","type":"exact"},{"name":"N-acetylated L-glutamic acid","type":"exact"},{"name":"acetylglutamic acid","type":"exact"}],"termid":"MOD:00053"}


id: PBO:0085118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; mutant has increased aneuploidy tolerance","termid":"PBO:0085118"}


id: PBO:0011990
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orthologous to S. cerevisiae YKR022C","termid":"PBO:0011990"}


id: PBO:0083365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene TRM5/YHR070W","termid":"PBO:0083365"}


id: SO:0000907
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to describe a feature that has been predicted using sequence similarity techniques.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"predicted","termid":"SO:0000732"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"supported_by_sequence_similarity","synonyms":[{"name":"supported by sequence similarity","type":"exact"}],"termid":"SO:0000907"}


id: PR:O43030
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fes1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O43030"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hsp70 nucleotide exchange factor fes1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B9.01","synonyms":[{"name":"Spom972h-fes1","type":"exact"}],"termid":"PR:O43030"}


id: GO:0038188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by cholecystokinin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:jc","PMID:11181948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"cholecystokinin signaling pathway","secondary_identifiers":["Wikipedia:Cholecystokinin"],"synonyms":[{"name":"CCK signaling","type":"exact"},{"name":"cholecystokinin receptor signaling pathway","type":"related"}],"termid":"GO:0038188"}


id: PBO:0027848
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_mononucleate_vegetative_cell","termid":"PBO:0027848"}


id: FYPO:0002870
data:
  {"alleles_by_uniquename":{"SJAG_04280:allele-1":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115558],"is_not":false,"summary":null,"term":"FYPO:0002870"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to a non-growing cell tip is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to new cell tip","termid":"FYPO:0004977"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04280":null,"SJAG_04522":null},"genotype_count":1,"genotypes_by_uniquename":{"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"increased protein localization to non-growing cell tip","references_by_uniquename":{"PMID:30664646":null},"single_locus_annotated_genes":["SJAG_04280"],"single_locus_genotype_uniquenames":["wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"increased protein localisation to non-growing cell tip","type":"exact"},{"name":"increased protein localization to new non-growing cell tip","type":"exact"},{"name":"increased protein localization to non-growing cell end","type":"exact"},{"name":"increased protein localization to non-growing cell tip during mitotic cell cycle","type":"related"},{"name":"increased protein localization to non-growing cell tip during vegetative growth","type":"exact"}],"termid":"FYPO:0002870","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0002870":null}}


id: PR:Q09760
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cullin-3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00186","PANTHER:PTHR11932:SF23","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cullin-3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24H6.03","secondary_identifiers":["UniProtKB:Q09760"],"synonyms":[{"name":"Cul-3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-CUL3","type":"exact"}],"termid":"PR:Q09760"}


id: PR:Q9Y7N3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- grx3 gene.","definition_xrefs":["UniProtKB:Q9Y7N3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monothiol glutaredoxin-3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1450.06c","synonyms":[{"name":"Spom972h-grx3","type":"exact"}],"termid":"PR:Q9Y7N3"}


id: GO:0005844
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro.","definition_xrefs":["ISBN:0198506732","NIF_Subcellular:sao1038025871"],"gene_count":0,"genotype_count":0,"name":"obsolete polysome (obsolete GO:0005844)","secondary_identifiers":["Wikipedia:Polysome"],"synonyms":[{"name":"polyribosome","type":"exact"}],"termid":"GO:0005844"}


id: PBO:0049107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 162","termid":"PBO:0049107"}


id: PBO:0035864
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H4_acetylation_during_vegetative_growth","termid":"PBO:0035864"}


id: PBO:0078463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-His (anticodon GTG) 1-1","termid":"PBO:0078463"}


id: PBO:0044956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrogenase/reductase 3","termid":"PBO:0044956"}


id: GO:0090091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of extracellular matrix disassembly. Extracellular matrix disassembly is a process that results in the breakdown of the extracellular matrix.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of extracellular matrix disassembly","termid":"GO:0010715"},{"relation_name":"is_a","term_name":"positive regulation of extracellular matrix organization","termid":"GO:1903055"},{"relation_name":"positively_regulates","term_name":"extracellular matrix disassembly","termid":"GO:0022617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of extracellular matrix disassembly","termid":"GO:0090091"}


id: PBO:0057328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 520c","termid":"PBO:0057328"}


id: PBO:0071958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS5 pseudogene 8","termid":"PBO:0071958"}


id: PBO:0011452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOPs/CORVET complex subunit Vps11 (predicted)","termid":"PBO:0011452"}


id: PBO:0054824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2237","termid":"PBO:0054824"}


id: FYPO:0002947
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the fungal-type cell wall is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell wall","termid":"FYPO:0002946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002946","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cell wall morphology","synonyms":[{"name":"cell wall morphology: abnormal","type":"related"}],"termid":"FYPO:0002947"}


id: PBO:0065024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 3 pseudogene 3","termid":"PBO:0065024"}


id: FYPO:0000063
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which DNA recombination is abnormal. DNA recombination is a process that results in reassortment of genes, producing gene combinations different from those that were present in the parents.","definition_xrefs":["GO:0006310","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolism phenotype","termid":"FYPO:0000293"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000293"],"is_obsolete":false,"name":"abnormal DNA recombination","synonyms":[{"name":"abnormal recombination","type":"exact"},{"name":"recombination defects","type":"exact"}],"termid":"FYPO:0000063"}


id: MOD:01002
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:92"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-aminobutyryl","termid":"MOD:01002"}


id: GO:0070954
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the directed killing of a target cell by a neutrophil.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte mediated cytotoxicity","termid":"GO:0001911"},{"relation_name":"is_a","term_name":"negative regulation of myeloid leukocyte mediated immunity","termid":"GO:0002887"},{"relation_name":"is_a","term_name":"regulation of neutrophil mediated cytotoxicity","termid":"GO:0070948"},{"relation_name":"negatively_regulates","term_name":"neutrophil mediated cytotoxicity","termid":"GO:0070942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neutrophil mediated cytotoxicity","synonyms":[{"name":"down regulation of neutrophil mediated cytotoxicity","type":"exact"},{"name":"down-regulation of neutrophil mediated cytotoxicity","type":"exact"},{"name":"downregulation of neutrophil mediated cytotoxicity","type":"exact"},{"name":"inhibition of neutrophil mediated cytotoxicity","type":"narrow"},{"name":"negative regulation of neutrophil mediated cell killing","type":"exact"}],"termid":"GO:0070954"}


id: GO:0009213
data:
  {"annotated_genes":["SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95074],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside triphosphate catabolic process","termid":"GO:0009149"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside triphosphate metabolic process","termid":"GO:0009211"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pyrimidine deoxyribonucleoside triphosphate catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine deoxyribonucleoside triphosphate breakdown","type":"exact"},{"name":"pyrimidine deoxyribonucleoside triphosphate catabolism","type":"exact"},{"name":"pyrimidine deoxyribonucleoside triphosphate degradation","type":"exact"}],"termid":"GO:0009213","terms_by_termid":{"GO:0046081":null}}


id: PBO:0111809
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronin family","termid":"PBO:0111809"}


id: PBO:0066664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RHO family interacting cell polarization regulator 1","termid":"PBO:0066664"}


id: PBO:0079436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin gamma complex associated protein 4","termid":"PBO:0079436"}


id: MOD:00474
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-(1,1,2-(2)H3)-propanamide-L-cysteine.","definition_xrefs":["Unimod:97#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-carboxamidoethyl-L-cysteine","termid":"MOD:00417"},{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-([1,1,2-(2)H3]-carboxamidoethyl)-L-cysteine","synonyms":[{"name":"Acrylamide d3","type":"related"},{"name":"Propionamide:2H(3)","type":"related"},{"name":"S-([1,1,2-(2)H3]-3-amino-3-oxopropyl)cysteine","type":"exact"},{"name":"S-([1,1,2-(2)H3]-carbamoylethyl)-L-cysteine","type":"exact"},{"name":"S-([1,1,2-(2)H3]-propanamide)-L-cysteine","type":"exact"}],"termid":"MOD:00474"}


id: PATO:0000963
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"opacity","termid":"PATO:0000957"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opaque","synonyms":[{"name":"clouding","type":"related"},{"name":"cloudy","type":"related"},{"name":"non-transparent","type":"exact"}],"termid":"PATO:0000963"}


id: PBO:0017534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"possible chromosome segregation protein (predicted)","termid":"PBO:0017534"}


id: PBO:0003346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TENA/THI family protein","termid":"PBO:0003346"}


id: PBO:0033792
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_phosphorylation_during_mitotic_M_phase","termid":"PBO:0033792"}


id: PBO:0084100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guanosine diphosphatase located in the Golgi; involved in the transport of GDP-mannose into the Golgi lumen, converting GDP to GMP after mannose is transferred to substrates; null mutants are defective in sporulation and pre-meiotic S phase entry; orthologous to human ENTPD6, a meiosis-associated non-obstructive azoospermia (NOA) related gene identified in GWAS studies","termid":"PBO:0084100"}


id: PBO:0052522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 35","termid":"PBO:0052522"}


id: SO:0000741
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kinetoplast is an interlocked network of thousands of minicircles and tens of maxicircles, located near the base of the flagellum of some protozoan species.","definition_xrefs":["PMID:8395055"],"direct_ancestors":[{"relation_name":"has_part","term_name":"maxicircle","termid":"SO:0000742"},{"relation_name":"has_part","term_name":"minicircle","termid":"SO:0000980"},{"relation_name":"is_a","term_name":"genome","termid":"SO:0001026"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetoplast","secondary_identifiers":["SO:0000826","http://en.wikipedia.org/wiki/Kinetoplast"],"synonyms":[{"name":"kinetoplast_chromosome","type":"exact"}],"termid":"SO:0000741"}


id: PBO:0082671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the dynactin complex; dynactin is required for dynein activity; null mutant exhibits defects in nuclear migration and spindle orientation and has reduced affinity for alcian blue dye; has homology to mammalian dynactin subunit p24","termid":"PBO:0082671"}


id: GO:0060017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the parathyroid gland over time, from its formation to the mature structure. The parathyroid gland is an organ specialised for secretion of parathyroid hormone.","definition_xrefs":["GOC:dph","ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"},{"relation_name":"part_of","term_name":"endocrine system development","termid":"GO:0035270"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"parathyroid gland development","termid":"GO:0060017"}


id: PBO:0060347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin XVB","termid":"PBO:0060347"}


id: PBO:0040381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting accessory protein 1","termid":"PBO:0040381"}


id: GO:0021785
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a branchiomotor neuron growth cone is directed to a specific target site. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx.","definition_xrefs":["GOC:jid","GOC:dgh","GO_REF:0000021","GOC:cls","GOC:dph","PMID:14699587"],"direct_ancestors":[{"relation_name":"is_a","term_name":"motor neuron axon guidance","termid":"GO:0008045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"branchiomotor neuron axon guidance","synonyms":[{"name":"BMN axon guidance","type":"exact"},{"name":"branchial motor axon guidance","type":"exact"},{"name":"special visceral motor neuron axon guidance","type":"exact"}],"termid":"GO:0021785"}


id: PBO:0055770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long non-coding regulator of POU2F2","termid":"PBO:0055770"}


id: PBO:0076545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TAT antisense RNA 1","termid":"PBO:0076545"}


id: PBO:0032742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-Tyr-tRNA deacylase Dtd1 (predicted)","termid":"PBO:0032742"}


id: PBO:0077315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM51 antisense RNA 2","termid":"PBO:0077315"}


id: PBO:0073763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 3 member 1","termid":"PBO:0073763"}


id: FYPO:0005065
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 at the mating type locus occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000871"},{"relation_name":"is_a","term_name":"abnormal histone methylation at silent mating-type cassette during vegetative growth","termid":"FYPO:0007373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased histone H3-K9 methylation at mating type locus during vegetative growth","synonyms":[{"name":"increased histone H3 K9 methylation at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 methylation at mating type locus during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 methylation at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone H3K9me at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 methylation at mating type locus during vegetative growth","type":"exact"}],"termid":"FYPO:0005065"}


id: PBO:0069168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 420, pseudogene","termid":"PBO:0069168"}


id: PBO:0061731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear RNA export factor 4 pseudogene","termid":"PBO:0061731"}


id: PBO:0061209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"noggin","termid":"PBO:0061209"}


id: FYPO:0004521
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that is elongated and branched (and septated), and undergoes one or two rounds of cell division and then dies.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branched, elongated cell","termid":"FYPO:0001512"},{"relation_name":"is_a","term_name":"inviable after spore germination, single or double cell division, elongated cell","termid":"FYPO:0002724"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, single or double cell division, branched, elongated cell","synonyms":[{"name":"inviable after spore germination, single or double cell division, elongated and branched cell","type":"exact"},{"name":"inviable following spore germination, single or double cell division, branched, elongated cell","type":"exact"},{"name":"inviable germinated spore, single or double cell division, branched, elongated cell","type":"exact"},{"name":"lethal after spore germination, single or double cell division, branched, elongated cell","type":"exact"}],"termid":"FYPO:0004521"}


id: PBO:0075079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 129","termid":"PBO:0075079"}


id: PBO:0064494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I subunit G","termid":"PBO:0064494"}


id: PBO:0002159
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"appears to be part of transcript of adjacent gene","termid":"PBO:0002159"}


id: GO:0008219
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538).","definition_xrefs":["GOC:mah","PMID:25236395","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell death","synonyms":[{"name":"accidental cell death","type":"related"},{"name":"necrosis","type":"related"}],"termid":"GO:0008219"}


id: PBO:0068262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 45S pre-ribosomal N4","termid":"PBO:0068262"}


id: PBO:0043973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"citrate synthase","termid":"PBO:0043973"}


id: GO:0051418
data:
  {"annotated_genes":["SJAG_02886","SJAG_02737","SJAG_02761","SJAG_01756","SJAG_00856","SJAG_03540","SJAG_07018"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113127],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030954"},{"annotations":[96471,97077,113375,96172,113132,102568],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051415"},{"annotations":[97078,114847],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051417"}]},"cv_name":"biological_process","definition":"The 'de novo' formation of a microtubule, mediated by the microtubule organizing center.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule nucleation","termid":"GO:0007020"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00856":null,"SJAG_01756":null,"SJAG_02737":null,"SJAG_02761":null,"SJAG_02886":null,"SJAG_03540":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0007010","GO:0000226","GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"microtubule nucleation by microtubule organizing center","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"MTOC-mediated microtubule nucleation","type":"exact"},{"name":"microtubule nucleation by MTOC","type":"exact"},{"name":"microtubule nucleation by microtubule organising centre","type":"exact"},{"name":"microtubule organizing center-mediated microtubule nucleation","type":"exact"}],"termid":"GO:0051418","terms_by_termid":{"GO:0030954":null,"GO:0051415":null,"GO:0051417":null}}


id: GO:0102614
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: germacra-1(10),4,11(13)-trien-12-oate + O2 + reduced [NADPH--hemoprotein reductase] = 8beta-hydroxygermacra-1(10),4,11(13)-trien-12-oate + H(+) + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:57964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"germacrene A acid 8beta-hydroxylase activity","secondary_identifiers":["EC:1.14.14.168","MetaCyc:RXN-15460"],"termid":"GO:0102614"}


id: PBO:0059443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane spanning 4-domains A14","termid":"PBO:0059443"}


id: GO:1901147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any mesenchymal cell apoptotic process that is involved in metanephric nephron morphogenesis.","definition_xrefs":["GOC:mtg_apoptosis","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal cell apoptotic process involved in metanephros development","termid":"GO:1900200"},{"relation_name":"is_a","term_name":"mesenchymal cell apoptotic process involved in nephron morphogenesis","termid":"GO:1901145"},{"relation_name":"part_of","term_name":"metanephric nephron morphogenesis","termid":"GO:0072273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis","termid":"GO:1901147"}


id: PBO:0055635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3074","termid":"PBO:0055635"}


id: FYPO:0001366
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cytoskeleton organization is normal (i.e. indistinguishable from wild type). Actin cytoskeleton organization is the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.","definition_xrefs":["PomBase:mah","GO:0030036"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal actin cytoskeleton organization","synonyms":[{"name":"normal actin cytoskeleton organisation","type":"exact"},{"name":"normal actin cytoskeleton organization during mitotic cell cycle","type":"related"},{"name":"normal actin cytoskeleton organization during vegetative growth","type":"exact"},{"name":"normal actin filament organization","type":"related"}],"termid":"FYPO:0001366"}


id: GO:0051480
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of calcium ions within the cytosol of a cell or between the cytosol and its surroundings.","definition_xrefs":["GOC:ai","GOC:mah","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular calcium ion homeostasis","termid":"GO:0006874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"regulation of cytosolic calcium ion concentration","synonyms":[{"name":"calcium ion homeostasis in cytoplasm","type":"broad"},{"name":"calcium ion homeostasis in cytosol","type":"exact"},{"name":"cytoplasmic calcium ion concentration regulation","type":"broad"},{"name":"cytoplasmic calcium ion homeostasis","type":"broad"},{"name":"cytosolic calcium ion concentration regulation","type":"exact"},{"name":"regulation of calcium ion concentration in cytoplasm","type":"broad"},{"name":"regulation of calcium ion concentration in cytosol","type":"exact"},{"name":"regulation of cytoplasmic calcium ion concentration","type":"broad"}],"termid":"GO:0051480"}


id: PBO:0047662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP14 antisense RNA 1","termid":"PBO:0047662"}


id: PBO:0066189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 11 pseudogene 1","termid":"PBO:0066189"}


id: PR:O94458
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1687.17c gene.","definition_xrefs":["UniProtKB:O94458","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized derlin-like protein C1687.17c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.17c","synonyms":[{"name":"Spom972h-SPAC1687.17c","type":"exact"}],"termid":"PR:O94458"}


id: SO:1000021
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transversion from T to A.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine_to_purine_transversion","termid":"SO:1000018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T_to_A_transversion","synonyms":[{"name":"T to A transversion","type":"exact"}],"termid":"SO:1000021"}


id: PBO:0071571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 37","termid":"PBO:0071571"}


id: GO:0008697
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-dehydro-4-deoxy-D-glucuronate = 3-deoxy-D-glycero-2,5-hexodiulosonate.","definition_xrefs":["RHEA:23896","EC:5.3.1.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity","secondary_identifiers":["KEGG_REACTION:R04383","MetaCyc:5.3.1.17-RXN"],"synonyms":[{"name":"4-deoxy-L-threo-5-hexosulose-uronate aldose-ketose-isomerase activity","type":"related"},{"name":"4-deoxy-L-threo-5-hexulose uronate isomerase activity","type":"related"},{"name":"5-keto-4-deoxyuronate isomerase activity","type":"related"}],"termid":"GO:0008697"}


id: PBO:0064952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 4","termid":"PBO:0064952"}


id: PBO:0016058
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Splicing EndoNuclease","termid":"PBO:0016058"}


id: PBO:0113443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase; K48-specific Ub chain binding receptor that assists Cdc48p in the dislocation of misfolded, polyubiquitinated ERAD substrates destined for proteasomal degradation; role in regulated destruction of ER membrane proteins, like HMG-CoA reductase (Hmg1/2p), cytosolic proteins (Fbp1p) and mislocalized proteins (Cse4p); mobilizes membrane-bound transcription factors by regulated Ub/proteasome-dependent processing; contains a UBX domain","termid":"PBO:0113443"}


id: PBO:0042715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cementum protein 1","termid":"PBO:0042715"}


id: GO:0035799
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the ureter to attain its fully functional state. The ureter is a muscular tube that transports urine from the kidney to the urinary bladder or from the Malpighian tubule to the hindgut.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:bf","PMID:17881463","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ maturation","termid":"GO:0048799"},{"relation_name":"part_of","term_name":"ureter development","termid":"GO:0072189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ureter maturation","termid":"GO:0035799"}


id: PBO:0079420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta pseudogene 3","termid":"PBO:0079420"}


id: PBO:0041209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic leucine zipper and W2 domains 1 pseudogene 1","termid":"PBO:0041209"}


id: PBO:0046141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 5A pseudogene 4","termid":"PBO:0046141"}


id: FYPO:0008248
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any RNA transcribed from long terminal repeat elements (LTRs) measured in a cell is lower than normal.","definition_xrefs":["PomBase:pc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased LTR-derived RNA level","termid":"FYPO:0008248"}


id: PBO:0053275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LILRB1 antisense RNA 1","termid":"PBO:0053275"}


id: PBO:0059365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S18B","termid":"PBO:0059365"}


id: PBO:0051684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INTS3 and NABP interacting protein","termid":"PBO:0051684"}


id: PBO:0046820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FA core complex associated protein 24","termid":"PBO:0046820"}


id: PBO:0014603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MBF transcription factor activator Rep1","termid":"PBO:0014603"}


id: GO:0052756
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: chitobiose + phosphate = N-acetyl-D-glucosamine + N-acetyl-alpha-D-glucosamine 1-phosphate. This reaction is the phosphorolysis of chitobiose, (GlcNAc)2, a dimer of beta-(1->4) linked glucosamine units.","definition_xrefs":["GOC:mengo_curators","PMID:15274915","Wikipedia:chitobiose"],"gene_count":0,"genotype_count":0,"name":"obsolete chitobiose phosphorylase activity (obsolete GO:0052756)","termid":"GO:0052756"}


id: PR:Q10490
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A leucine--tRNA ligase, cytoplasmic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02145","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26F1.13c","secondary_identifiers":["UniProtKB:Q10490"],"synonyms":[{"name":"LeuRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-LARS","type":"exact"},{"name":"leucyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10490"}


id: PBO:0055078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2496","termid":"PBO:0055078"}


id: PBO:0077213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane 9 superfamily member 4","termid":"PBO:0077213"}


id: FYPO:0003217
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the chromatin silencing at the central core of the centromeric regions is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin silencing at centromere central core","termid":"FYPO:0000640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"decreased chromatin silencing at centromere central core","synonyms":[{"name":"decreased chromatin silencing at centromere central core during mitotic cell cycle","type":"related"},{"name":"decreased chromatin silencing at centromere central core during vegetative growth","type":"exact"},{"name":"decreased negative regulation of transcription at centromere central core","type":"related"},{"name":"decreased transcriptional repression at centromere central core","type":"related"},{"name":"reduced chromatin silencing at centromere central core","type":"exact"}],"termid":"FYPO:0003217"}


id: GO:0009308
data:
  {"annotated_genes":["SJAG_03288","SJAG_03167","SJAG_04546","SJAG_01455","SJAG_04481","SJAG_04130","SJAG_03632","SJAG_05007","SJAG_00043","SJAG_04904","SJAG_02505"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96861],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006595"},{"annotations":[84926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033387"},{"annotations":[83446],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009447"},{"annotations":[107324],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0010967"},{"annotations":[109537,98862],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008295"},{"annotations":[98684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008216"},{"annotations":[109538],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006597"},{"annotations":[99615,87598,110827,100510],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000162"},{"annotations":[87599,99616],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006568"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_01455":null,"SJAG_02505":null,"SJAG_03167":null,"SJAG_03288":null,"SJAG_03632":null,"SJAG_04130":null,"SJAG_04481":null,"SJAG_04546":null,"SJAG_04904":null,"SJAG_05007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0044106"],"synonyms":[{"name":"amine metabolism","type":"exact"},{"name":"cellular amine metabolic process","type":"exact"}],"termid":"GO:0009308","terms_by_termid":{"GO:0000162":null,"GO:0006568":null,"GO:0006595":null,"GO:0006597":null,"GO:0008216":null,"GO:0008295":null,"GO:0009447":null,"GO:0010967":null,"GO:0033387":null}}


id: PBO:0000091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein (predicted)","termid":"PBO:0000091"}


id: PBO:0030901
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cellular_process_phenotype_during_vegetative_growth","termid":"PBO:0030901"}


id: PBO:0005884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Threonine, mitochondrial","termid":"PBO:0005884"}


id: PBO:0079007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Thr (anticodon TGT) 1-1","termid":"PBO:0079007"}


id: PBO:0085801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; contains transmembrane domains; involved in secretion of proteins that lack classical secretory signal sequences; component of the detergent-insoluble glycolipid-enriched complexes (DIGs); NCE102 has a paralog, FHN1, that arose from the whole genome duplication","termid":"PBO:0085801"}


id: PBO:0070790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 20","termid":"PBO:0070790"}


id: PBO:0056624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 6","termid":"PBO:0056624"}


id: PBO:0026829
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_Lys63-specific_deubiquitinase_activity","termid":"PBO:0026829"}


id: GO:0106372
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + primary fluorescent dioxobilin-type chlorophyll catabolite = H+ + methanol + O13(4)-desmethyl pFCC.","definition_xrefs":["RHEA:67176","PMID:23723324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"primary fluorescent dioxobilin-type chlorophyll catabolite methylesterase activity","termid":"GO:0106372"}


id: PBO:0002174
data:
  {"annotation_feature_type":"gene","cv_name":"sequence_feature","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein KEN box","termid":"PBO:0002174"}


id: FYPO:0005298
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of oxidized DNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal DNA binding","termid":"FYPO:0000655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000653","FYPO:0000652"],"is_obsolete":false,"name":"normal oxidized DNA binding","termid":"FYPO:0005298"}


id: PBO:0053534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 536","termid":"PBO:0053534"}


id: GO:1990534
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-methyl-5'-thioadenosine + thermospermine + H+ = S-adenosyl 3-(methylthio)propylamine + spermidine.","definition_xrefs":["PMID:24906355","RHEA:57836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine oxidase activity","termid":"GO:0046592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"thermospermine oxidase activity","termid":"GO:1990534"}


id: PBO:0053068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"layilin","termid":"PBO:0053068"}


id: FYPO:0005449
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_03143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03143","name":"sep1delta","uniquename":"SJAG_03143:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"},"SJAG_04551:allele-4":{"allele_type":"partial_amino_acid_deletion","description":"Pmk1 from S. pombe with deleted residues 82-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sp(delta82-105)","uniquename":"SJAG_04551:allele-4"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[115560],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004105"},{"annotations":[115329],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001132"},{"annotations":[115591],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}],"single_locus_phenotype":[{"annotations":[115624,115566],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002998"},{"annotations":[115635,115636],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006557"},{"annotations":[115306,115704],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"},{"annotations":[115544],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004105"},{"annotations":[115580,115581,115588,115592],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"},{"annotations":[115798,115806],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002678"},{"annotations":[115805],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002033"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a specific cellular process does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00028":null,"SJAG_00514":null,"SJAG_00610":null,"SJAG_01050":null,"SJAG_01143":null,"SJAG_01330":null,"SJAG_01665":null,"SJAG_01745":null,"SJAG_02252":null,"SJAG_02392":null,"SJAG_02592":null,"SJAG_03143":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_03892":null,"SJAG_04498":null,"SJAG_04522":null,"SJAG_04551":null},"genotype_count":11,"genotypes_by_uniquename":{"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 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id: PBO:0047639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase 1A pseudogene 2","termid":"PBO:0047639"}


id: PBO:0030220
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_guanosine-diphosphatase_activity","termid":"PBO:0030220"}


id: PBO:0081525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF433 and ZNF878 antisense RNA 1","termid":"PBO:0081525"}


id: PBO:0067779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 79","termid":"PBO:0067779"}


id: PBO:0062141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily F member 8B pseudogene","termid":"PBO:0062141"}


id: PBO:0044293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CXXC finger protein 1 pseudogene 1","termid":"PBO:0044293"}


id: GO:0070800
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of conidiophore stalk development, a process that leads to the formation of a conidiophore stalk. The conidiophore stalk is part of a specialized hypha that extends aerially from the growth substrate and supports structures from which conidia, or asexual spores, develop.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of conidiophore stalk development","termid":"GO:0070799"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"conidiophore stalk development","termid":"GO:0070788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of conidiophore stalk development","termid":"GO:0070800"}


id: FYPO:0000632
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects mitochondrial translation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation phenotype","termid":"FYPO:0000291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"mitochondrial translation phenotype","synonyms":[{"name":"fission yeast mitochondrial translation phenotype","type":"exact"},{"name":"mitochondrial translation phenotype during mitotic cell cycle","type":"related"},{"name":"mitochondrial translation phenotype during vegetative growth","type":"exact"}],"termid":"FYPO:0000632"}


id: PBO:0056164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAD2L1 divergent transcript","termid":"PBO:0056164"}


id: PBO:0084706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane ADP/ATP translocator; exchanges cytosolic ADP for mitochondrially synthesized ATP; expressed under anaerobic conditions; similar to Aac1p; has roles in maintenance of viability and in respiration; AAC3 has a paralog, PET9, that arose from the whole genome duplication","termid":"PBO:0084706"}


id: GO:0016106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sesquiterpenoid compounds, terpenoids with three isoprene units.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpenoid metabolic process","termid":"GO:0006714"},{"relation_name":"is_a","term_name":"terpenoid biosynthetic process","termid":"GO:0016114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"sesquiterpenoid biosynthetic process","synonyms":[{"name":"sesquiterpenoid anabolism","type":"exact"},{"name":"sesquiterpenoid biosynthesis","type":"exact"},{"name":"sesquiterpenoid formation","type":"exact"},{"name":"sesquiterpenoid synthesis","type":"exact"}],"termid":"GO:0016106"}


id: GO:0015862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of uridine, uracil riboside, across a lipid bilayer, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside transport","termid":"GO:0015864"},{"relation_name":"is_a","term_name":"pyrimidine-containing compound transmembrane transport","termid":"GO:0072531"},{"relation_name":"is_a","term_name":"nucleoside transmembrane transport","termid":"GO:1901642"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"uridine transmembrane transport","termid":"GO:0015862"}


id: PBO:0061045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIPA like domain containing 1","termid":"PBO:0061045"}


id: PBO:0082083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-oxoprolinase; enzyme is ATP-dependent and functions as a dimer; similar to mouse Oplah gene; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress","termid":"PBO:0082083"}


id: PR:Q9UU90
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribonuclease P/MRP protein subunit POP5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04981","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease P/MRP protein subunit POP5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC830.09c","secondary_identifiers":["UniProtKB:Q9UU90"],"synonyms":[{"name":"Spom972h-POP5","type":"exact"}],"termid":"PR:Q9UU90"}


id: PBO:0078191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 5-1","termid":"PBO:0078191"}


id: PBO:0059940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 26","termid":"PBO:0059940"}


id: GO:0047465
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an N-acyl-D-glucosamine 6-phosphate = an N-acyl-D-mannosamine 6-phosphate.","definition_xrefs":["RHEA:23932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"N-acylglucosamine-6-phosphate 2-epimerase activity","secondary_identifiers":["EC:5.1.3.9","MetaCyc:5.1.3.9-RXN"],"synonyms":[{"name":"N-acetylglucosmamine 6-phosphate 2-epimerase activity","type":"related"},{"name":"N-acetylmannosamine-6-phosphate 2-epimerase activity","type":"related"},{"name":"N-acyl-D-glucosamine-6-phosphate 2-epimerase activity","type":"related"},{"name":"acylglucosamine phosphate 2-epimerase activity","type":"related"},{"name":"acylglucosamine-6-phosphate 2-epimerase activity","type":"related"},{"name":"acylmannosamine phosphate 2-epimerase activity","type":"related"}],"termid":"GO:0047465"}


id: PBO:0084306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Iron transporter, mediates Fe2+ transport across inner mito membrane; mitochondrial carrier family member; active under low-iron conditions; may transport other cations; MRS3 has a paralog, MRS4, that arose from the whole genome duplication","termid":"PBO:0084306"}


id: PBO:0028867
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_mRNA_level_during_vegetative_growth","termid":"PBO:0028867"}


id: PBO:0052847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 4-3","termid":"PBO:0052847"}


id: PBO:0054446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1843","termid":"PBO:0054446"}


id: GO:1902222
data:
  {"annotated_genes":["SJAG_00493"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006572"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of erythrose 4-phosphate/phosphoenolpyruvate family amino acid.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-amino acid catabolic process","termid":"GO:0170035"},{"relation_name":"is_a","term_name":"proteinogenic amino acid catabolic process","termid":"GO:0170040"},{"relation_name":"is_a","term_name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process","termid":"GO:1902221"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00493":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid breakdown","type":"exact"},{"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolism","type":"exact"},{"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid degradation","type":"exact"}],"termid":"GO:1902222","terms_by_termid":{"GO:0006572":null}}


id: GO:1903753
data:
  {"annotated_genes":["SJAG_05000","SJAG_02000","SJAG_03185","SJAG_03893","SJAG_02013","SJAG_04825"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87685,91083,92030,95531,113266,114498],"is_not":false,"summary":null,"term":"GO:1903753"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of p38MAPK cascade.","definition_xrefs":["GOC:TermGenie","PMID:18681888","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of MAPK cascade","termid":"GO:0043409"},{"relation_name":"is_a","term_name":"regulation of p38MAPK cascade","termid":"GO:1900744"},{"relation_name":"negatively_regulates","term_name":"p38MAPK cascade","termid":"GO:0038066"}],"gene_count":6,"genes_by_uniquename":{"SJAG_02000":null,"SJAG_02013":null,"SJAG_03185":null,"SJAG_03893":null,"SJAG_04825":null,"SJAG_05000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of p38MAPK cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of p38 MAPK cascade","type":"exact"},{"name":"down regulation of p38 cascade","type":"exact"},{"name":"down regulation of p38MAPK cascade","type":"exact"},{"name":"down-regulation of p38 MAPK cascade","type":"exact"},{"name":"down-regulation of p38 cascade","type":"exact"},{"name":"down-regulation of p38MAPK cascade","type":"exact"},{"name":"downregulation of p38 MAPK cascade","type":"exact"},{"name":"downregulation of p38 cascade","type":"exact"},{"name":"downregulation of p38MAPK cascade","type":"exact"},{"name":"inhibition of p38 MAPK cascade","type":"narrow"},{"name":"inhibition of p38 cascade","type":"narrow"},{"name":"inhibition of p38MAPK cascade","type":"narrow"},{"name":"negative regulation of osmosensory signaling MAPK cascade","type":"narrow"},{"name":"negative regulation of p38 MAPK cascade","type":"exact"},{"name":"negative regulation of p38 cascade","type":"exact"}],"termid":"GO:1903753","terms_by_termid":{"GO:1903753":null}}


id: GO:0044549
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a GTP cyclohydrolase.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"GTP cyclohydrolase binding","secondary_identifiers":["GO:0043106"],"synonyms":[{"name":"GTP cyclohydrolase I binding","type":"narrow"}],"termid":"GO:0044549"}


id: GO:2001194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lysine biosynthetic process via alpha-aminoadipate and saccharopine.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lysine biosynthetic process via aminoadipic acid","termid":"GO:1902986"},{"relation_name":"regulates","term_name":"lysine biosynthetic process via alpha-aminoadipate and saccharopine","termid":"GO:0051975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"regulation of lysine biosynthetic process via alpha-aminoadipate and saccharopine","synonyms":[{"name":"regulation of lysine biosynthesis via aminoadipic acid and saccharopine","type":"exact"},{"name":"regulation of lysine biosynthetic process via aminoadipic acid and saccharopine","type":"exact"}],"termid":"GO:2001194"}


id: _global:involved_in_positive_regulation_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"c involved in regulation of p if c is involved in some p' and p' positively regulates some p","direct_ancestors":[{"relation_name":"is_a","term_name":"involved_in_regulation_of","termid":"_global:involved_in_regulation_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"involved_in_positive_regulation_of","secondary_identifiers":["RO:0002429"],"termid":"_global:involved_in_positive_regulation_of"}


id: GO:1904080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any positive regulation of transcription from RNA polymerase II promoter that is involved in neuron fate specification.","definition_xrefs":["GO_REF:0000060","PMID:11959845","GOC:TermGenie","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter involved in neuron fate specification (obsolete GO:1904080)","synonyms":[{"name":"activation of global transcription from RNA polymerase II promoter involved in neuron fate specification","type":"related"},{"name":"activation of transcription from RNA polymerase II promoter involved in neuron fate specification","type":"exact"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in neuron fate specification","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in neuron fate specification","type":"related"},{"name":"positive regulation of transcription from Pol II promoter involved in neuron fate specification","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter, global involved in neuron fate specification","type":"related"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in neuron fate specification","type":"narrow"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in neuron fate specification","type":"exact"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in neuron fate specification","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in neuron fate specification","type":"exact"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in neuron fate specification","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in neuron fate specification","type":"exact"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in neuron fate specification","type":"related"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in neuron fate specification","type":"exact"}],"termid":"GO:1904080"}


id: PBO:0048544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guided entry of tail-anchored proteins factor 4","termid":"PBO:0048544"}


id: PBO:0030587
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_valine_level","termid":"PBO:0030587"}


id: PBO:0052805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 72","termid":"PBO:0052805"}


id: GO:0015881
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of creatine across a membrane.","definition_xrefs":["GOC:TermGenie","GO_REF:0000069","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"},{"relation_name":"is_a","term_name":"modified amino acid transport","termid":"GO:0072337"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"creatine transmembrane transport","secondary_identifiers":["GO:1902598"],"synonyms":[{"name":"creatine transport","type":"broad"}],"termid":"GO:0015881"}


id: PBO:0089403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB/POZ family substrate adaptor for cullin 3 ubiquitin ligase Btb3","termid":"PBO:0089403"}


id: PATO:0000755
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000755 vocalization value (obsolete PATO:0000755)","termid":"PATO:0000755"}


id: PR:Q10182
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- erf4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras modification protein erf4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3F10.07c","synonyms":[{"name":"Spom972h-erf4","type":"exact"},{"name":"meiotically up-regulated gene 91 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10182"}


id: PBO:0090482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase, Sirtuin family, NAD-dependent Hst4","termid":"PBO:0090482"}


id: PR:Q1MTR0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial inner membrane protease ATP23 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04204","PANTHER:PTHR21711:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane protease atp23 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC320.12","secondary_identifiers":["UniProtKB:Q1MTR0"],"synonyms":[{"name":"Spom972h-XRCC6BP1","type":"exact"}],"termid":"PR:Q1MTR0"}


id: PBO:0082694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the INO80 chromatin remodeling complex; critical for INO80 function; involved in regulation of chromosome segregation and maintenance of normal centromeric chromatin structure; human ortholog INO80C is a member of the human INO80 complex; implicated in DNA repair based on genetic interactions with RAD52 epistasis genes","termid":"PBO:0082694"}


id: PBO:0067486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 620, pseudogene","termid":"PBO:0067486"}


id: GO:0098900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination. This typically occurs via modulation of the activity or expression of voltage-gated ion channels.","definition_xrefs":["GOC:dos","GOC:go_curators","GOC:tb","GOC:dph","ISBN:978-0-07-139011-8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"},{"relation_name":"is_a","term_name":"regulation of biological process","termid":"GO:0050789"},{"relation_name":"regulates","term_name":"action potential","termid":"GO:0001508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of action potential","termid":"GO:0098900"}


id: SO:0002306
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of a chromosome where regulatory events occur, including epigenetic modifications. These epigenetic modifications can include nucleosome modifications and post-replicational DNA modifications.","definition_xrefs":["PMID:32782014","GREEKC:cl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome_part","termid":"SO:0000830"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin_regulatory_region","synonyms":[{"name":"chromatin regulatory region","type":"exact"}],"termid":"SO:0002306"}


id: PBO:0046416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPH receptor A2","termid":"PBO:0046416"}


id: PBO:0070752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 8","termid":"PBO:0070752"}


id: GO:0004668
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + L-arginyl-[protein] = L-citrullyl-[protein] + NH4+, resulting in citrullination of the target protein. This reaction is calcium-dependent.","definition_xrefs":["PMID:27393304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"protein-arginine deiminase activity","secondary_identifiers":["RHEA:18089","Reactome:R-HSA-1183128","MetaCyc:PROTEIN-ARGININE-DEIMINASE-RXN","EC:3.5.3.15","Reactome:R-HSA-3247569"],"synonyms":[{"name":"peptidylarginine deiminase activity","type":"related"},{"name":"protein-L-arginine iminohydrolase activity","type":"related"}],"termid":"GO:0004668"}


id: PBO:0046997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 89 member B","termid":"PBO:0046997"}


id: null:local:computer file
data:
  {"annotation_feature_type":"gene","cv_name":"null","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"computer file","termid":"null:local:computer file"}


id: PBO:0029626
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_meiotic_sister_chromatid_cohesion","termid":"PBO:0029626"}


id: GO:0045855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of a process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pole plasm oskar mRNA localization","termid":"GO:0007317"},{"relation_name":"is_a","term_name":"negative regulation of intracellular mRNA localization","termid":"GO:1904581"},{"relation_name":"negatively_regulates","term_name":"pole plasm oskar mRNA localization","termid":"GO:0045451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of pole plasm oskar mRNA localization","synonyms":[{"name":"down regulation of pole plasm oskar mRNA localization","type":"exact"},{"name":"down-regulation of pole plasm oskar mRNA localization","type":"exact"},{"name":"downregulation of pole plasm oskar mRNA localization","type":"exact"},{"name":"inhibition of pole plasm oskar mRNA localization","type":"narrow"},{"name":"negative regulation of oocyte pole plasm oskar mRNA localization","type":"exact"},{"name":"negative regulation of pole plasm oskar mRNA localisation","type":"exact"}],"termid":"GO:0045855"}


id: SO:0000131
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a gene that is regulated as it is translated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulated","termid":"SO:0000119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translationally_regulated","synonyms":[{"name":"translationally regulated","type":"exact"}],"termid":"SO:0000131"}


id: PBO:0006190
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-not_happens_during","termid":"PBO:0006190"}


id: PBO:0070564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 30","termid":"PBO:0070564"}


id: GO:0098948
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic specialization membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:mah","GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of postsynaptic specialization membrane (obsolete GO:0098948)","synonyms":[{"name":"intrinsic to postsynaptic specialization membrane","type":"narrow"}],"termid":"GO:0098948"}


id: PATO:0001814
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's impaired elastic tension that facilitate response to stimuli.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tonicity","termid":"PATO:0001439"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystonicity","termid":"PATO:0001814"}


id: PBO:0029990
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_pre-mRNA_level","termid":"PBO:0029990"}


id: PBO:0027289
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glutathione_transferase_activity_during_stationary_phase","termid":"PBO:0027289"}


id: GO:0051944
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of the directed movement of catecholamine neurotransmitters into a neuron or glial cell.","definition_xrefs":["GOC:tb","GOC:ai","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neurotransmitter uptake","termid":"GO:0051582"},{"relation_name":"is_a","term_name":"regulation of catecholamine uptake involved in synaptic transmission","termid":"GO:0051940"},{"relation_name":"is_a","term_name":"positive regulation of amine transport","termid":"GO:0051954"},{"relation_name":"positively_regulates","term_name":"catecholamine uptake involved in synaptic transmission","termid":"GO:0051934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of catecholamine uptake involved in synaptic transmission","synonyms":[{"name":"activation of catecholamine uptake during transmission of nerve impulse","type":"narrow"},{"name":"positive regulation of catecholamine neurotransmitter reuptake","type":"exact"},{"name":"positive regulation of catecholamine neurotransmitter uptake","type":"exact"},{"name":"positive regulation of catecholamine uptake during transmission of nerve impulse","type":"broad"},{"name":"stimulation of catecholamine uptake during transmission of nerve impulse","type":"narrow"},{"name":"up regulation of catecholamine uptake during transmission of nerve impulse","type":"exact"},{"name":"up-regulation of catecholamine uptake during transmission of nerve impulse","type":"exact"},{"name":"upregulation of catecholamine uptake during transmission of nerve impulse","type":"exact"}],"termid":"GO:0051944"}


id: FYPO:0007323
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which stress granule assembly is normal (i.e. indistinguishable from wild type) during a cellular response to heat.","definition_xrefs":["PMID:32071154","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal stress granule assembly during vegetative growth","termid":"FYPO:0002350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal stress granule assembly during cellular response to heat","synonyms":[{"name":"normal cytoplasmic stress granule assembly during cellular response to heat","type":"exact"},{"name":"normal stress granule assembly during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"normal stress granule assembly during cellular response to heat during vegetative growth","type":"exact"},{"name":"normal stress granule assembly during cellular response to heat stress","type":"exact"},{"name":"normal stress granule formation during cellular response to heat","type":"exact"}],"termid":"FYPO:0007323"}


id: GO:0036392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-C motif) ligand 20 (CCL20) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:jc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 20 production","synonyms":[{"name":"C-C motif chemokine 20 production","type":"exact"},{"name":"CCL-20 production","type":"exact"},{"name":"CCL20 production","type":"exact"}],"termid":"GO:0036392"}


id: PBO:0056996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR34B and MIR34C host gene","termid":"PBO:0056996"}


id: FYPO:0001241
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing anisomycin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000257","FYPO:0000003","FYPO:0002058","FYPO:0002057","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on anisomycin","synonyms":[{"name":"normal cell population growth in presence of anisomycin","type":"exact"},{"name":"normal cell population growth on anisomycin","type":"exact"},{"name":"normal cellular response to anisomycin","type":"related"},{"name":"normal vegetative cell population growth on anisomycin","type":"exact"}],"termid":"FYPO:0001241"}


id: PBO:0053579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 602","termid":"PBO:0053579"}


id: GO:0035631
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains at least CD40 (a cell surface receptor of the tumour necrosis factor receptor (TNFR) superfamily), and other signaling molecules.","definition_xrefs":["PMID:9221764","GOC:BHF","PMID:20614026"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"CD40 receptor complex","termid":"GO:0035631"}


id: GO:0046684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pyrethroid stimulus. Pyrethroids are a group of growth regulators, analogous to insect juvenile hormones, that interfere with the development of insect larvae and are used in the control of insects that are harmful in the adult stage.","definition_xrefs":["ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to insecticide","termid":"GO:0017085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to pyrethroid","synonyms":[{"name":"pyrethroid resistance","type":"related"},{"name":"pyrethroid susceptibility/resistance","type":"related"}],"termid":"GO:0046684"}


id: PBO:0050602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HSD11B1 antisense RNA 1","termid":"PBO:0050602"}


id: FYPO:0001838
data:
  {"alleles_by_uniquename":{"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_04551:allele-2":{"allele_type":"amino_acid_insertion","description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sj(ins82-105)","uniquename":"SJAG_04551:allele-2"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115797,115801],"is_not":false,"summary":null,"term":"FYPO:0001838"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein phosphorylation during vegetative growth","termid":"FYPO:0000775"},{"relation_name":"is_a","term_name":"decreased protein phosphorylation","termid":"FYPO:0002679"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_04551":null},"genotype_count":2,"genotypes_by_uniquename":{"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0002494","FYPO:0001320","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"decreased protein phosphorylation during vegetative growth","references_by_uniquename":{"PMID:34198697":null},"single_locus_annotated_genes":["SJAG_04551","SJAG_00610"],"single_locus_genotype_uniquenames":["pck2delta","Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"decreased protein phosphorylation during mitotic cell cycle","type":"related"},{"name":"reduced protein phosphorylation during vegetative growth","type":"exact"}],"termid":"FYPO:0001838","terms_by_termid":{"FYPO:0001838":null}}


id: GO:0034691
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An integrin complex that comprises one alphaE subunit and one beta7 subunit.","definition_xrefs":["PMID:12297042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integrin complex","termid":"GO:0008305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"integrin alphaE-beta7 complex","synonyms":[{"name":"Itgae-Itgb7 complex","type":"narrow"}],"termid":"GO:0034691"}


id: PBO:0061550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-nucleotidase, cytosolic IIIA","termid":"PBO:0061550"}


id: GO:0061261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transition where a mesenchymal cell establishes apical/basolateral polarity, forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation involved in kidney development","termid":"GO:0035850"},{"relation_name":"is_a","term_name":"mesenchymal to epithelial transition","termid":"GO:0060231"},{"relation_name":"is_a","term_name":"cell differentiation involved in mesonephros development","termid":"GO:0061208"},{"relation_name":"part_of","term_name":"mesonephros morphogenesis","termid":"GO:0061206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal to epithelial transition involved in mesonephros morphogenesis","synonyms":[{"name":"mesonephric mesenchyme to epithelial transition","type":"related"}],"termid":"GO:0061261"}


id: GO:0008683
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + H+ = CO2 + succinate semialdehyde.","definition_xrefs":["EC:4.1.1.71","RHEA:10524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"2-oxoglutarate decarboxylase activity","secondary_identifiers":["MetaCyc:RXN-7774","KEGG_REACTION:R00272"],"synonyms":[{"name":"2-oxoglutarate carboxy-lyase (succinate-semialdehyde-forming)","type":"related"},{"name":"2-oxoglutarate carboxy-lyase activity","type":"related"},{"name":"alpha-ketoglutarate decarboxylase activity","type":"related"},{"name":"alpha-ketoglutaric decarboxylase activity","type":"related"},{"name":"pre-2-oxoglutarate decarboxylase activity","type":"related"}],"termid":"GO:0008683"}


id: PBO:0044148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCCTC-binding factor","termid":"PBO:0044148"}


id: PBO:0067940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 242","termid":"PBO:0067940"}


id: PBO:0047805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box K2","termid":"PBO:0047805"}


id: SO:0001106
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4).","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_secondary_structure","termid":"SO:0001078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"asx_motif","secondary_identifiers":["BS:00202"],"synonyms":[{"name":"asx motif","type":"exact"}],"termid":"SO:0001106"}


id: PBO:0053414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 352","termid":"PBO:0053414"}


id: GO:0170038
data:
  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id: PBO:0059964
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id: FYPO:0006331
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id: PBO:0083646
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id: PBO:0047576
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id: GO:0001649
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id: GO:0008534
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id: GO:0007559
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id: PBO:0041802
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