# terms

id: RO:0002331
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"c involved_in p if and only if c enables some process p', and p' is part of p","direct_ancestors":[{"relation_name":"is_a","term_name":"involved_in_or_involved_in_regulation_of","termid":"RO:0002431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"involved_in","termid":"RO:0002331"}


id: PBO:0084654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Minor orotate phosphoribosyltransferase (OPRTase) isozyme; catalyzes the fifth enzymatic step in the de novo biosynthesis of pyrimidines, converting orotate into orotidine-5'-phosphate; URA10 has a paralog, URA5, that arose from the whole genome duplication","termid":"PBO:0084654"}


id: PBO:0065623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPN2 pseudogene 1","termid":"PBO:0065623"}


id: PBO:0042616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDP-diacylglycerol synthase 2","termid":"PBO:0042616"}


id: PBO:0051185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-76 (pseudogene)","termid":"PBO:0051185"}


id: GO:0021721
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the superior olivary nucleus structure. In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:jid","GOC:dgh","GOC:dph","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"},{"relation_name":"part_of","term_name":"pons structural organization","termid":"GO:0021585"},{"relation_name":"part_of","term_name":"superior olivary nucleus morphogenesis","termid":"GO:0021719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"superior olivary nucleus structural organization","synonyms":[{"name":"superior olivary nucleus structural organisation","type":"exact"}],"termid":"GO:0021721"}


id: GO:0034043
data:
  {"annotated_genes":["SJAG_03724"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92207],"is_not":false,"summary":null,"term":"GO:0034043"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal of 5-hydroxymethyluracil bases by cleaving the N-C1' glycosidic bond between the oxidized pyrimidine and the deoxyribose sugar.","definition_xrefs":["PMID:17641464","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity","termid":"GO:0000703"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016798","GO:0140097","GO:0003674"],"is_obsolete":false,"name":"5-hydroxymethyluracil DNA N-glycosylase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"5-hmU DNA N-glycosylase activity","type":"exact"}],"termid":"GO:0034043","terms_by_termid":{"GO:0034043":null}}


id: GO:0033121
data:
  {"annotated_genes":["SJAG_00685","SJAG_02785","SJAG_05314"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72076,74894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[85246],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006110"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleotide catabolic process","termid":"GO:0030811"},{"relation_name":"is_a","term_name":"regulation of purine nucleotide metabolic process","termid":"GO:1900542"},{"relation_name":"regulates","term_name":"purine nucleotide catabolic process","termid":"GO:0006195"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00685":null,"SJAG_02785":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of purine nucleotide catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of purine nucleotide breakdown","type":"exact"},{"name":"regulation of purine nucleotide catabolism","type":"exact"},{"name":"regulation of purine nucleotide degradation","type":"exact"}],"termid":"GO:0033121","terms_by_termid":{"GO:0006110":null,"GO:0045820":null}}


id: PBO:0068053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 358","termid":"PBO:0068053"}


id: GO:0016644
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, disulfide, an iron-sulfur protein, NAD, NADP or oxygen.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors (obsolete GO:0016644)","synonyms":[{"name":"oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors","type":"exact"}],"termid":"GO:0016644"}


id: PBO:0054883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2297","termid":"PBO:0054883"}


id: FYPO:0004778
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of farnesyltranstransferase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal farnesyltranstransferase activity","termid":"FYPO:0004777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"decreased farnesyltranstransferase activity","synonyms":[{"name":"reduced farnesyltranstransferase activity","type":"exact"}],"termid":"FYPO:0004778"}


id: PBO:0075955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAM binding protein","termid":"PBO:0075955"}


id: PBO:0066247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif single stranded interacting protein 3","termid":"PBO:0066247"}


id: SO:0000374
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An RNA with catalytic activity.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"ribozymic","termid":"SO:0001186"},{"relation_name":"is_a","term_name":"enzymatic_RNA","termid":"SO:0000372"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribozyme","secondary_identifiers":["http://en.wikipedia.org/wiki/Ribozyme"],"synonyms":[{"name":"INSDC_feature:ncRNA","type":"broad"},{"name":"INSDC_qualifier:ribozyme","type":"exact"}],"termid":"SO:0000374"}


id: GO:1902242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of copal-8-ol diphosphate(3-).","definition_xrefs":["PMID:22672125","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid catabolic process","termid":"GO:0009395"},{"relation_name":"is_a","term_name":"diterpenoid catabolic process","termid":"GO:0016103"},{"relation_name":"is_a","term_name":"copal-8-ol diphosphate(3-) metabolic process","termid":"GO:1902241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"copal-8-ol diphosphate(3-) catabolic process","synonyms":[{"name":"copal-8-ol diphosphate(3-) breakdown","type":"exact"},{"name":"copal-8-ol diphosphate(3-) catabolism","type":"exact"},{"name":"copal-8-ol diphosphate(3-) degradation","type":"exact"}],"termid":"GO:1902242"}


id: PBO:0092000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane spermidine family transmembrane transporter","termid":"PBO:0092000"}


id: GO:1905915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell differentiation involved in phenotypic switching.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:rph","PMID:25089138","GOC:BHF","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"cell differentiation involved in phenotypic switching","termid":"GO:0090679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell differentiation involved in phenotypic switching","termid":"GO:1905915"}


id: PATO:0002483
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Positional quality in which an entity is located outside of another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"external to","termid":"PATO:0002483"}


id: PBO:0046959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 81 member A","termid":"PBO:0046959"}


id: GO:0140868
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3 H+ + 15-cis-4,4'-diapophytoene + 3 FAD = 4,4'-diapolycopene + 3 FADH2. This reaction consists of three successive dehydrogenations that lead to the introduction of three double bonds into 4,4'-diapophytoene (dehydrosqualene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'-diaponeurosporene (the major deep-yellow pigment in staphylococci strains) as the end product.","definition_xrefs":["PMID:15933032"],"gene_count":0,"genotype_count":0,"name":"obsolete 4,4'-diapophytoene desaturase (4,4'-diapolycopene-forming) (obsolete GO:0140868)","synonyms":[{"name":"4,4'-diapophytoene desaturase activity","type":"broad"}],"termid":"GO:0140868"}


id: PR:Q9UT10
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ski7 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized GTP-binding protein P8A3.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP8A3.05","synonyms":[{"name":"Spom972h-ski7","type":"exact"}],"termid":"PR:Q9UT10"}


id: PBO:0074266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMC5-SMC6 complex localization factor 1","termid":"PBO:0074266"}


id: PBO:0042653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule 1","termid":"PBO:0042653"}


id: GO:0140839
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: RNA polymerase II large subunit CTD heptapeptide repeat (consensus YSPTSPS) cis-proline (omega=180) (position 3) = RNA polymerase II large subunit trans-proline (omega=0) (position 3).","definition_xrefs":["PMID:28248323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II CTD heptapeptide repeat peptidyl-prolyl isomerase activity","termid":"GO:0140838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"RNA polymerase II CTD heptapeptide repeat P3 isomerase activity","secondary_identifiers":["EC:5.2.1.8"],"synonyms":[{"name":"RNA polymerase II C-terminal domain P3 isomerase activity","type":"exact"}],"termid":"GO:0140839"}


id: PBO:0084103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guanylyltransferase involved in mRNA 5' capping; subunit of mRNA capping enzyme, which is a heterotetramer composed of two molecules of Ceg1p and a homodimer of Cet1p, the mRNA 5'-triphosphatase subunit; nuclear import of Ceg1p requires interaction with Cet1p; mammalian capping enzyme is a single bifunctional polypeptide; human homolog RNGTT can complement yeast ceg1 null mutant","termid":"PBO:0084103"}


id: PBO:0057331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 520f","termid":"PBO:0057331"}


id: PBO:0073056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCY1 like pseudokinase 3","termid":"PBO:0073056"}


id: GO:1901449
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of response to butan-1-ol.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to alcohol","termid":"GO:1901420"},{"relation_name":"is_a","term_name":"regulation of response to butan-1-ol","termid":"GO:1901448"},{"relation_name":"negatively_regulates","term_name":"response to butan-1-ol","termid":"GO:1901422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of response to butan-1-ol","synonyms":[{"name":"down regulation of response to butan-1-ol","type":"exact"},{"name":"down-regulation of response to butan-1-ol","type":"exact"},{"name":"downregulation of response to butan-1-ol","type":"exact"},{"name":"inhibition of response to butan-1-ol","type":"narrow"}],"termid":"GO:1901449"}


id: PBO:0056907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitoguardin 2","termid":"PBO:0056907"}


id: GO:0022893
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the low-affinity transfer of L-tryptophan from one side of a membrane to the other. Tryptophan is 2-amino-3-(1H-indol-3-yl)propanoic acid. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-tryptophan transmembrane transporter activity","termid":"GO:0015196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"low-affinity tryptophan transmembrane transporter activity","secondary_identifiers":["GO:0015510"],"synonyms":[{"name":"low-affinity tryptophan permease activity","type":"related"}],"termid":"GO:0022893"}


id: PBO:0030533
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_GTPase_activity","termid":"PBO:0030533"}


id: FYPO:0001948
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the cytosol is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"},{"relation_name":"is_a","term_name":"altered level of substance in cytosol","termid":"FYPO:0001604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased level of substance in cytosol","synonyms":[{"name":"increased cytosolic level of substance","type":"exact"},{"name":"increased level of substance in cytosol during mitotic cell cycle","type":"related"},{"name":"increased level of substance in cytosol during vegetative growth","type":"exact"}],"termid":"FYPO:0001948"}


id: FYPO:0004127
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 4 of histone H3 at protein-coding genes occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K4 methylation during vegetative growth","termid":"FYPO:0002330"},{"relation_name":"is_a","term_name":"decreased histone H3-K4 dimethylation during vegetative growth","termid":"FYPO:0002367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"decreased histone H3-K4 dimethylation at protein coding gene during vegetative growth","synonyms":[{"name":"decreased histone H3 K4 dimethylation at protein coding gene during vegetative growth","type":"exact"},{"name":"decreased histone H3-K4 dimethylation at protein coding gene during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K4 dimethylation at protein coding gene during vegetative growth","type":"exact"},{"name":"decreased histone H3K4me2 at protein coding gene during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K4 dimethylation at protein coding gene during vegetative growth","type":"exact"},{"name":"reduced histone H3-K4 dimethylation at protein coding gene during vegetative growth","type":"exact"}],"termid":"FYPO:0004127"}


id: PBO:0030758
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_miconazole","termid":"PBO:0030758"}


id: GO:0034461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a uropod detaches from the cell substrate and retracts the rear of a migrating cell.","definition_xrefs":["GOC:mah","PMID:10704379"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uropod organization","termid":"GO:0032796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"uropod retraction","termid":"GO:0034461"}


id: GO:0000028
data:
  {"annotated_genes":["SJAG_02340","SJAG_02477","SJAG_00523","SJAG_04524","SJAG_02803","SJAG_01296","SJAG_04998","SJAG_04746","SJAG_02335","SJAG_02749","SJAG_03798","SJAG_00572","SJAG_00513","SJAG_01169","SJAG_02479","SJAG_03424","SJAG_02184","SJAG_03617","SJAG_01548"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73688,85912,90802,92633,93488,93489,96556,97820,97821,97822,99982,101796,101797,102931,102932,107564,107565,107770,107771,107772,107935,108234,112617,114790],"is_not":false,"summary":null,"term":"GO:0000028"},{"annotations":[103759,109238],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034462"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.","definition_xrefs":["PMID:30467428","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"},{"relation_name":"part_of","term_name":"ribosome assembly","termid":"GO:0042255"},{"relation_name":"part_of","term_name":"ribosomal small subunit biogenesis","termid":"GO:0042274"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00513":null,"SJAG_00523":null,"SJAG_00572":null,"SJAG_01169":null,"SJAG_01296":null,"SJAG_01548":null,"SJAG_02184":null,"SJAG_02335":null,"SJAG_02340":null,"SJAG_02477":null,"SJAG_02479":null,"SJAG_02749":null,"SJAG_02803":null,"SJAG_03424":null,"SJAG_03617":null,"SJAG_03798":null,"SJAG_04524":null,"SJAG_04746":null,"SJAG_04998":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0042254","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"ribosomal small subunit assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"30S ribosomal subunit assembly","type":"narrow"},{"name":"40S ribosomal subunit assembly","type":"narrow"}],"termid":"GO:0000028","terms_by_termid":{"GO:0000028":null,"GO:0034462":null}}


id: PBO:0038537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 12B","termid":"PBO:0038537"}


id: GO:0098950
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic early endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:mah","GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of postsynaptic early endosome membrane (obsolete GO:0098950)","synonyms":[{"name":"intrinsic to postsynaptic early endosome membrane","type":"narrow"}],"termid":"GO:0098950"}


id: FYPO:0007443
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the endoplasmic reticulum is abolished, and the protein is present in the cytosol instead.","definition_xrefs":["PomBase:mah","PMID:32320462"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to endoplasmic reticulum during vegetative growth","termid":"FYPO:0003777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to endoplasmic reticulum membrane, with protein mislocalized to cytosol","synonyms":[{"name":"abolished protein localization to ER membrane, with protein mislocalized to cytosol","type":"exact"},{"name":"abolished protein localization to endoplasmic reticulum membrane, with protein mislocalized to cytosol during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to endoplasmic reticulum membrane, with protein mislocalized to cytosol during vegetative growth","type":"exact"}],"termid":"FYPO:0007443"}


id: GO:0080022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the primary root over time, from its formation to the mature structure. The primary root develops directly from the embryonic radicle.","definition_xrefs":["GOC:dhl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"root development","termid":"GO:0048364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"primary root development","termid":"GO:0080022"}


id: GO:0050197
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + CoA + phytanate = AMP + diphosphate + H+ + phytanoyl-CoA.","definition_xrefs":["RHEA:21380","EC:6.2.1.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"phytanate-CoA ligase activity","secondary_identifiers":["MetaCyc:PHYTANATE--COA-LIGASE-RXN","Reactome:R-HSA-389622","KEGG_REACTION:R03631"],"synonyms":[{"name":"phytanate:CoA ligase (AMP-forming)","type":"related"},{"name":"phytanoyl-CoA ligase activity","type":"related"}],"termid":"GO:0050197"}


id: PBO:0059359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S17 pseudogene 5","termid":"PBO:0059359"}


id: PBO:0086184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for uridine thiolation of Lys(UUU) and Glu(UUC) tRNAs; required for the thiolation of uridine at the wobble position of Lys(UUU) and Glu(UUC) tRNAs; has a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae","termid":"PBO:0086184"}


id: PATO:0002183
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity.","definition_xrefs":["PATOC:JH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular quality","termid":"PATO:0002182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclicity","termid":"PATO:0002183"}


id: FYPO:0005371
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which linear minichromosomes are lost at a higher frequency than normal during the vegetative growth phase of the life cycle. Minichromosome loss occurs when one or both daughter cells do not inherit copies of a minichromosome from the mother cell, and may result from failure of minichromosome replication or segregation.","definition_xrefs":["PMID:11226171","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased minichromosome loss during vegetative growth","termid":"FYPO:0001840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased linear minichromosome loss during vegetative growth","synonyms":[{"name":"increased linear minichromosome loss during mitotic cell cycle","type":"related"},{"name":"mitotic linear minichromosome maintenance defect","type":"related"}],"termid":"FYPO:0005371"}


id: FYPO:0006965
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of HMG-CoA measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular HMG-CoA level","synonyms":[{"name":"increased HMG-CoA accumulation","type":"related"},{"name":"increased cellular 3-hydroxy-3-methylglutaryl-CoA level","type":"exact"},{"name":"increased cellular HMG-CoA level during mitotic cell cycle","type":"related"},{"name":"increased cellular HMG-CoA level during vegetative growth","type":"exact"},{"name":"increased cellular hydroxymethylglutaryl-CoA level","type":"exact"}],"termid":"FYPO:0006965"}


id: FYPO:0000100
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to chloramphenicol. Cells stop growing (and may die) at a concentration of chloramphenicol that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0000003","FYPO:0000139","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to chloramphenicol","synonyms":[{"name":"hypersensitive to chloramphenicol","type":"exact"},{"name":"sensitive to chloramphenicol during mitotic cell cycle","type":"related"},{"name":"sensitive to chloramphenicol during vegetative growth","type":"exact"}],"termid":"FYPO:0000100"}


id: GO:0007589
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of a fluid by a cell or tissue in an animal.","definition_xrefs":["GOC:ai","GOC:dph","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretion","termid":"GO:0046903"},{"relation_name":"is_a","term_name":"regulation of body fluid levels","termid":"GO:0050878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"body fluid secretion","termid":"GO:0007589"}


id: PBO:0071653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36 pseudogene 17","termid":"PBO:0071653"}


id: PBO:0069008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 252, pseudogene","termid":"PBO:0069008"}


id: GO:0140615
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that catalyzes the cleavage of citrate into oxaloacetate and acetyl-CoA.","definition_xrefs":["PMID:12376641"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"ATP-dependent citrate lyase complex","synonyms":[{"name":"citrate lyase complex","type":"broad"},{"name":"citrate synthase complex","type":"broad"}],"termid":"GO:0140615"}


id: PBO:0048212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-aminobutyric acid type A receptor subunit pi","termid":"PBO:0048212"}


id: GO:0050313
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-sulfanylglutathione + O2 + H2O = sulfite + glutathione + 2 H+.","definition_xrefs":["EC:1.13.11.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"sulfur dioxygenase activity","secondary_identifiers":["RHEA:12981","Reactome:R-HSA-1614605","MetaCyc:RXN-13161"],"synonyms":[{"name":"S-sulfanylglutathione:oxygen oxidoreductase activity","type":"related"},{"name":"sulfur oxygenase activity","type":"related"},{"name":"sulfur:oxygen oxidoreductase activity","type":"related"},{"name":"sulphur dioxygenase activity","type":"exact"}],"termid":"GO:0050313"}


id: GO:0000483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small SubUnit (SSU) rRNA, the 5.8S rRNA, 2S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with four genes, in this order, are produced in the nuclei of D. melanogaster as well as in those of other dipteran species.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0042254","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA)","termid":"GO:0000483"}


id: GO:0004371
data:
  {"annotated_genes":["SJAG_04320"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89094],"is_not":false,"summary":null,"term":"GO:0004371"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + glycerone = ADP + glycerone phosphate + 2 H+.","definition_xrefs":["EC:2.7.1.29","RHEA:15773"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04320":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016301"],"is_obsolete":false,"name":"glycerone kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GLYCERONE-KINASE-RXN","KEGG_REACTION:R01011"],"synonyms":[{"name":"ATP:glycerone phosphotransferase activity","type":"related"},{"name":"acetol kinase (phosphorylating)","type":"related"},{"name":"acetol kinase activity","type":"related"},{"name":"dihydroxyacetone kinase activity","type":"related"}],"termid":"GO:0004371","terms_by_termid":{"GO:0004371":null}}


id: GO:0002167
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ternary complex consisting of VRK3, VHR (Dusp3), and ERK1 (Mapk3) existing in neuronal cells, and is involved in regulation of the ERK signaling pathway.","definition_xrefs":["GOC:hjd","PMID:16845380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"VRK3/VHR/ERK complex","termid":"GO:0002167"}


id: PBO:0055398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2828","termid":"PBO:0055398"}


id: PBO:0052426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KISS1 receptor","termid":"PBO:0052426"}


id: PR:O14003
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A replication factor C subunit 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01671","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication factor C subunit 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27E2.10c","secondary_identifiers":["UniProtKB:O14003"],"synonyms":[{"name":"Spom972h-RFC5","type":"exact"},{"name":"replication factor C3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14003"}


id: FYPO:0006191
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is decreased, and some of the protein is present in the cytoplasm instead, during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to nucleus, with protein mislocalized to cytoplasm","termid":"FYPO:0004056"},{"relation_name":"is_a","term_name":"decreased protein localization to nucleus during mitosis","termid":"FYPO:0005672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to nucleus, with protein mislocalized to cytoplasm during mitosis","synonyms":[{"name":"decreased protein localisation to nucleus, with protein mislocalised to cytoplasm during mitosis","type":"exact"},{"name":"decreased protein localization in nucleus, with protein mislocalized to cytoplasm during mitosis","type":"exact"},{"name":"decreased protein localization to nucleus, with protein mislocalized to cytoplasm, during mitosis during vegetative growth","type":"exact"},{"name":"decreased protein localization to nucleus, with protein mislocalized to cytoplasm, during mitotic nuclear division","type":"exact"},{"name":"reduced protein localization to nucleus, with protein mislocalized to cytoplasm during mitosis","type":"exact"}],"termid":"FYPO:0006191"}


id: GO:1903647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of chlorophyll catabolic process.","definition_xrefs":["PMID:24719469","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chlorophyll catabolic process","termid":"GO:0010271"},{"relation_name":"is_a","term_name":"negative regulation of tetrapyrrole catabolic process","termid":"GO:1901405"},{"relation_name":"negatively_regulates","term_name":"chlorophyll catabolic process","termid":"GO:0015996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0033013"},{"rel_name":"negatively_regulates","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"negative regulation of chlorophyll catabolic process","synonyms":[{"name":"down regulation of chlorophyll breakdown","type":"exact"},{"name":"down regulation of chlorophyll catabolic process","type":"exact"},{"name":"down regulation of chlorophyll catabolism","type":"exact"},{"name":"down regulation of chlorophyll degradation","type":"exact"},{"name":"down-regulation of chlorophyll breakdown","type":"exact"},{"name":"down-regulation of chlorophyll catabolic process","type":"exact"},{"name":"down-regulation of chlorophyll catabolism","type":"exact"},{"name":"down-regulation of chlorophyll degradation","type":"exact"},{"name":"downregulation of chlorophyll breakdown","type":"exact"},{"name":"downregulation of chlorophyll catabolic process","type":"exact"},{"name":"downregulation of chlorophyll catabolism","type":"exact"},{"name":"downregulation of chlorophyll degradation","type":"exact"},{"name":"inhibition of chlorophyll breakdown","type":"narrow"},{"name":"inhibition of chlorophyll catabolic process","type":"narrow"},{"name":"inhibition of chlorophyll catabolism","type":"narrow"},{"name":"inhibition of chlorophyll degradation","type":"narrow"},{"name":"negative regulation of chlorophyll breakdown","type":"exact"},{"name":"negative regulation of chlorophyll catabolism","type":"exact"},{"name":"negative regulation of chlorophyll degradation","type":"exact"}],"termid":"GO:1903647"}


id: PBO:0057433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 551a","termid":"PBO:0057433"}


id: PBO:0070351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 24","termid":"PBO:0070351"}


id: GO:0008506
data:
  {"annotated_genes":["SJAG_03960"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91830],"is_not":false,"summary":null,"term":"GO:0008506"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sucrose(out) + H+(out) = sucrose(in) + H+(in).","definition_xrefs":["TC:2.A.1.5.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate:proton symporter activity","termid":"GO:0005351"},{"relation_name":"is_a","term_name":"sucrose:monoatomic cation symporter activity","termid":"GO:0009669"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"sucrose:proton symporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:TRANS-RXN-244","RHEA:72187"],"synonyms":[{"name":"hydrogen/sucrose transporter activity","type":"broad"},{"name":"sucrose:hydrogen symporter activity","type":"exact"}],"termid":"GO:0008506","terms_by_termid":{"GO:0008506":null}}


id: PBO:0051110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1-58","termid":"PBO:0051110"}


id: GO:0038120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of the C-C chemokine CCL21 to a C-C chemokine type 7 receptor (CCR7) on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:nhn","PMID:15059845","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine (C-C motif) ligand 21 signaling pathway","termid":"GO:0038116"},{"relation_name":"is_a","term_name":"C-C chemokine receptor CCR7 signaling pathway","termid":"GO:0038118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"CCL21-activated CCR7 signaling pathway","synonyms":[{"name":"CCL21-activated CCR7 signalling pathway","type":"exact"}],"termid":"GO:0038120"}


id: PBO:0077091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tigger transposable element derived 6","termid":"PBO:0077091"}


id: GO:0021684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the cerebellar granule layer. This process pertains to the initial formation of a structure from unspecified parts. The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer.","definition_xrefs":["GOC:cls","GO_REF:0000021","GOC:jid","GOC:dgh","ISBN:0838580343","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"cerebellar granular layer morphogenesis","termid":"GO:0021683"},{"relation_name":"part_of","term_name":"cerebellar cortex formation","termid":"GO:0021697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar granular layer formation","termid":"GO:0021684"}


id: GO:0031548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of signaling via the brain-derived neurotrophic factor receptor signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"regulates","term_name":"brain-derived neurotrophic factor receptor signaling pathway","termid":"GO:0031547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of brain-derived neurotrophic factor receptor signaling pathway","synonyms":[{"name":"regulation of BDNF receptor signaling pathway","type":"exact"},{"name":"regulation of BDNF receptor signalling pathway","type":"exact"},{"name":"regulation of brain-derived neurotrophic factor receptor signalling pathway","type":"exact"}],"termid":"GO:0031548"}


id: PBO:0076375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TAB2 antisense RNA 1","termid":"PBO:0076375"}


id: PATO:0002198
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of its constitution.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quality of a substance","termid":"PATO:0002198"}


id: PBO:0048516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glial cell derived neurotrophic factor","termid":"PBO:0048516"}


id: FYPO:0007531
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 9 of histone H3 is decreased at heterochromatin islands near genes that are normally expressed during the meiotic cell cycle.","definition_xrefs":["PMID:22144463","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3-K9 dimethylation at heterochromatin island during vegetative growth","termid":"FYPO:0007213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"decreased histone H3-K9 dimethylation at heterochromatin island at meiotic gene during vegetative growth","synonyms":[{"name":"decreased histone H3 K9 dimethylation at heterochromatin island at meiotic gene during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at heterochromatin island at meiosis gene during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at heterochromatin island at meiotic gene during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K9 dimethylation at heterochromatin island at meiotic gene during vegetative growth","type":"exact"},{"name":"decreased histone H3K9me2 at heterochromatin island at meiotic gene during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9 dimethylation at heterochromatin island at meiotic gene during vegetative growth","type":"exact"}],"termid":"FYPO:0007531"}


id: PBO:0113207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial fission factor (mitofissin) essential for mitophagy; required for Dmn1p-mediated mitochondrial fission; directly binds to lipid membranes and brings about lipid membrane fragility to facilitate membrane fission; S. pombe homolog complements null mutant","termid":"PBO:0113207"}


id: PBO:0069637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 914, pseudogene","termid":"PBO:0069637"}


id: GO:0007612
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience.","definition_xrefs":["ISBN:0582227089","ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"learning or memory","termid":"GO:0007611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"learning","secondary_identifiers":["Wikipedia:Learning"],"termid":"GO:0007612"}


id: PBO:0043616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COMMD5 pseudogene 1","termid":"PBO:0043616"}


id: GO:0042269
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of natural killer cell mediated cytotoxicity.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte mediated cytotoxicity","termid":"GO:0001910"},{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated immunity","termid":"GO:0002715"},{"relation_name":"regulates","term_name":"natural killer cell mediated cytotoxicity","termid":"GO:0042267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of natural killer cell mediated cytotoxicity","synonyms":[{"name":"regulation of NK cell mediated cell death","type":"exact"},{"name":"regulation of NK cell mediated cell killing","type":"exact"},{"name":"regulation of NK cell mediated cytolysis","type":"related"},{"name":"regulation of NK cell mediated cytotoxicity","type":"related"},{"name":"regulation of natural killer cell mediated cell death","type":"exact"},{"name":"regulation of natural killer cell mediated cell killing","type":"exact"},{"name":"regulation of natural killer cell mediated cytolysis","type":"related"},{"name":"regulation of natural killer-cell mediated cytolysis","type":"related"}],"termid":"GO:0042269"}


id: PR:O13951
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- iwr1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13951"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II nuclear localization protein iwr1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H4.08","synonyms":[{"name":"Spom972h-iwr1","type":"exact"}],"termid":"PR:O13951"}


id: GO:0090611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a protein or peptide, via the multivesicular body (MVB) sorting pathway; proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation. This process is independent of ubiquitination.","definition_xrefs":["PMID:22547407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteolysis involved in protein catabolic process","termid":"GO:0051603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"ubiquitin-independent protein catabolic process via the multivesicular body sorting pathway","termid":"GO:0090611"}


id: PBO:0091706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin-dependent protein kinase Ppk27","termid":"PBO:0091706"}


id: PBO:0088066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-specific protease; cleaves ubiquitin from ubiquitinated proteins; present in the nucleus and cytoplasm","termid":"PBO:0088066"}


id: PBO:0042544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 9","termid":"PBO:0042544"}


id: GO:0047490
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a pectin = an oligosaccharide with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronate end + a pectin. This reaction is the eliminative cleavage of (1->4)-alpha-D-galacturonan methyl ester to give oligosaccharides with 4-deoxy-6-O-methyl-alpha-D-galact-4-enuronosyl groups at their nonreducing ends.","definition_xrefs":["EC:4.2.2.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"pectin lyase activity","secondary_identifiers":["MetaCyc:RXN-19781"],"synonyms":[{"name":"(1->4)-6-O-methyl-alpha-D-galacturonan lyase activity","type":"related"},{"name":"PL activity","type":"related"},{"name":"PMGL activity","type":"related"},{"name":"PNL activity","type":"related"},{"name":"endo-pectin lyase activity","type":"related"},{"name":"pectin methyltranseliminase activity","type":"related"},{"name":"pectin trans-eliminase activity","type":"broad"},{"name":"pectolyase activity","type":"related"},{"name":"polymethylgalacturonic transeliminase activity","type":"related"}],"termid":"GO:0047490"}


id: PBO:0066952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 254","termid":"PBO:0066952"}


id: GO:1901242
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + doxorubicin(in) = ADP + phosphate + doxorubicin(out).","definition_xrefs":["PMID:15090538","GOC:TermGenie","PMID:12057006"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"alcohol transmembrane transporter activity","termid":"GO:0015665"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"},{"relation_name":"is_a","term_name":"carbohydrate derivative transmembrane transporter activity","termid":"GO:1901505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"ABC-type doxorubicin transporter activity","secondary_identifiers":["TC:3.A.1.105.1"],"synonyms":[{"name":"ATPase-coupled doxorubicin transmembrane transporter activity","type":"related"},{"name":"doxorubicin transmembrane-transporting ATPase activity","type":"related"}],"termid":"GO:1901242"}


id: FYPO:0001278
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which MCM complex assembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex assembly during vegetative growth","termid":"FYPO:0001215"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal MCM complex assembly","synonyms":[{"name":"normal MCM complex assembly during mitotic cell cycle","type":"related"},{"name":"normal MCM complex assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0001278"}


id: GO:0001946
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Lymph vessel formation when new vessels emerge from the proliferation of pre-existing vessels.","definition_xrefs":["GOC:dph","PMID:11596157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"lymph vessel morphogenesis","termid":"GO:0036303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphangiogenesis","secondary_identifiers":["Wikipedia:Lymphangiogenesis"],"synonyms":[{"name":"lymph vessel formation","type":"exact"}],"termid":"GO:0001946"}


id: GO:0051401
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a calponin homology protein domain, a domain of 100 residues that occurs in signaling and cytoskeletal proteins.","definition_xrefs":["Prosite:PDOC50021","PMID:11911887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"CH domain binding","synonyms":[{"name":"calponin homology domain binding","type":"exact"}],"termid":"GO:0051401"}


id: PBO:0078674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 7-1","termid":"PBO:0078674"}


id: GO:0001560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which external signals modulate the frequency, rate or extent of cell growth, the irreversible increase in size of a cell over time.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell growth","termid":"GO:0001558"},{"relation_name":"part_of","term_name":"cellular response to stimulus","termid":"GO:0051716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell growth by extracellular stimulus","synonyms":[{"name":"interpretation of external signals that regulate cell growth","type":"exact"},{"name":"regulation of cell growth by detection of exogenous stimulus","type":"exact"},{"name":"regulation of cell growth by sensing of exogenous stimulus","type":"exact"},{"name":"regulation of growth by exogenous signal","type":"exact"},{"name":"regulation of growth by exogenous stimuli","type":"exact"},{"name":"regulation of growth by exogenous stimulus","type":"exact"},{"name":"regulation of growth by external signal","type":"exact"},{"name":"regulation of growth by external stimuli","type":"exact"},{"name":"regulation of growth by external stimulus","type":"exact"}],"termid":"GO:0001560"}


id: GO:0045995
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of embryonic development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal development","termid":"GO:2000026"},{"relation_name":"regulates","term_name":"embryo development","termid":"GO:0009790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of embryonic development","termid":"GO:0045995"}


id: SO:1001269
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-canonical start codon with 4 base pairs.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non_canonical_start_codon","termid":"SO:0000680"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"four_bp_start_codon","synonyms":[{"name":"4bp start codon","type":"exact"},{"name":"four bp start codon","type":"exact"}],"termid":"SO:1001269"}


id: PR:O14091
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sut1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general alpha-glucoside permease (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F3.08","synonyms":[{"name":"Spom972h-sut1","type":"exact"}],"termid":"PR:O14091"}


id: PBO:0059776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 2","termid":"PBO:0059776"}


id: GO:0070490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a Pup protein is conjugated to a target protein via an isopeptide bond between the carboxy-terminus of Pup and the epsilon-amino group of a lysine residue of the target protein.","definition_xrefs":["PMID:18980670"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"},{"relation_name":"is_a","term_name":"protein modification by small protein conjugation","termid":"GO:0032446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"protein pupylation","synonyms":[{"name":"Pup-protein conjugation","type":"exact"},{"name":"pupylation","type":"exact"}],"termid":"GO:0070490"}


id: PBO:0011434
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae LHP1","termid":"PBO:0011434"}


id: FYPO:0003534
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the monopolar index is lower than normal. The monopolar index is the proportion of the population undergoing monopolar growth at any given time.","definition_xrefs":["PomBase:al","PomBase:mah","PMID:20501954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased monopolar index","synonyms":[{"name":"decreased frequency of monopolar growth polarity","type":"related"},{"name":"decreased number of cells undergoing monopolar growth","type":"exact"},{"name":"reduced monopolar index","type":"exact"}],"termid":"FYPO:0003534"}


id: GO:0071269
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-homocysteine, the L-enantiomer of 2-amino-4-sulfanylbutanoic acid.","definition_xrefs":["GOC:ecd","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine family amino acid biosynthetic process","termid":"GO:0009070"},{"relation_name":"is_a","term_name":"homocysteine biosynthetic process","termid":"GO:0071268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"L-homocysteine biosynthetic process","synonyms":[{"name":"L-homocysteine anabolism","type":"exact"},{"name":"L-homocysteine biosynthesis","type":"exact"},{"name":"L-homocysteine formation","type":"exact"},{"name":"L-homocysteine synthesis","type":"exact"}],"termid":"GO:0071269"}


id: FYPO:0002488
data:
  {"alleles_by_uniquename":{"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115621],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0008029"}]},"cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype in which a cell lyses, i.e. the plasma membrane ruptures and cytoplasm is lost. Note that in fission yeast cell lysis, the integrity of the cell wall is also compromised.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"inviable cell","termid":"FYPO:0000049"},{"relation_name":"is_a","term_name":"inviable cell","termid":"FYPO:0000049"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04697":null},"genotype_count":1,"genotypes_by_uniquename":{"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"cell lysis","references_by_uniquename":{"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_04697"],"single_locus_genotype_uniquenames":["gms1delta"],"synonyms":[{"name":"cytolysis","type":"exact"},{"name":"inviable, lysed cell","type":"exact"}],"termid":"FYPO:0002488","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0008029":null}}


id: PBO:0081438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 287","termid":"PBO:0081438"}


id: FYECO:0000412
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which tunicamycin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ tunicamycin","synonyms":[{"name":"tunicamycin added","type":"exact"}],"termid":"FYECO:0000412"}


id: GO:0071770
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components, including (phenyl)phthiocerol, phthiodiolone, phthiotriol dimycocerosate and diphthioceranate, to form the DIM/DIP layer of the Actinobacterium-type cell wall.","definition_xrefs":["PMID:15653820","GOC:mah","PMID:3149973","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"part_of","term_name":"Actinobacterium-type cell wall biogenesis","termid":"GO:0071766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0071554","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"DIM/DIP cell wall layer assembly","synonyms":[{"name":"DIM cell wall layer assembly","type":"exact"},{"name":"DIM/DIP cell wall layer biogenesis","type":"related"},{"name":"PDIM cell wall layer assembly","type":"exact"}],"termid":"GO:0071770"}


id: FYPO:0002050
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which vegetative a cell is branched, elongated, has no septum, and contains more than one nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branched, elongated cell","termid":"FYPO:0001512"},{"relation_name":"is_a","term_name":"elongated multinucleate aseptate vegetative cell","termid":"FYPO:0002049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0000005","FYPO:0001320","FYPO:0001985","FYPO:0000032"],"is_obsolete":false,"name":"branched elongated multinucleate aseptate vegetative cell","synonyms":[{"name":"branched elongated multinucleate aseptate cell during vegetative growth","type":"exact"},{"name":"branched elongated multinucleate aseptate vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002050"}


id: GO:0018694
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 H+ + O2 + p-cymene + 2 reduced [2Fe-2S]-[ferredoxin] = 4-isopropylbenzyl alcohol + H2O + 2 oxidized [2Fe-2S]-[ferredoxin].","definition_xrefs":["RHEA:51604"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"p-cymene methyl hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-661","UM-BBD_reactionID:r0392","EC:1.14.15.25"],"termid":"GO:0018694"}


id: FYPO:0005182
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein degradation is decreased when the cell is exposed to ultraviolet light.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein degradation during vegetative growth","termid":"FYPO:0000846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0002274"],"is_obsolete":false,"name":"decreased protein degradation during cellular response to UV","synonyms":[{"name":"decreased protein breakdown during cellular response to UV","type":"exact"},{"name":"decreased protein catabolic process during cellular response to UV","type":"exact"},{"name":"decreased protein catabolism during cellular response to UV","type":"exact"},{"name":"decreased protein degradation during cellular response to UV during mitotic cell cycle","type":"related"},{"name":"decreased protein degradation during cellular response to UV during vegetative growth","type":"exact"},{"name":"decreased protein degradation during cellular response to ultraviolet light","type":"exact"},{"name":"reduced protein degradation during cellular response to UV","type":"exact"}],"termid":"FYPO:0005182"}


id: PBO:0004838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit Med7","termid":"PBO:0004838"}


id: PBO:0001455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic PUF family protein 1 (predicted)","termid":"PBO:0001455"}


id: PBO:0041534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 17 open reading frame 50","termid":"PBO:0041534"}


id: PBO:0067837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 139","termid":"PBO:0067837"}


id: PBO:0050431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein K pseudogene 2","termid":"PBO:0050431"}


id: FYPO:0006762
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a normal (i.e. indistinguishable from wild type) extent during a cellular response to hydroxyurea. All genes, or a specific subset of genes, may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transcription during vegetative growth","termid":"FYPO:0001855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000294","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal transcription during cellular response to hydroxyurea","synonyms":[{"name":"normal transcription during cellular response to HU","type":"exact"},{"name":"normal transcription during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"normal transcription during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"normal transcription in response to hydroxyurea","type":"exact"}],"termid":"FYPO:0006762"}


id: GO:1904153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of retrograde protein transport, ER to cytosol.","definition_xrefs":["GO_REF:0000058","GOC:bf","GOC:PARL","PMID:18555783","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein exit from endoplasmic reticulum","termid":"GO:0070862"},{"relation_name":"is_a","term_name":"regulation of retrograde protein transport, ER to cytosol","termid":"GO:1904152"},{"relation_name":"negatively_regulates","term_name":"retrograde protein transport, ER to cytosol","termid":"GO:0030970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of retrograde protein transport, ER to cytosol","synonyms":[{"name":"down regulation of protein dislocation from ER","type":"exact"},{"name":"down regulation of retrograde protein transport, ER to cytosol","type":"exact"},{"name":"down regulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"},{"name":"down-regulation of protein dislocation from ER","type":"exact"},{"name":"down-regulation of retrograde protein transport, ER to cytosol","type":"exact"},{"name":"down-regulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"},{"name":"downregulation of protein dislocation from ER","type":"exact"},{"name":"downregulation of retrograde protein transport, ER to cytosol","type":"exact"},{"name":"downregulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"},{"name":"inhibition of protein dislocation from ER","type":"narrow"},{"name":"inhibition of retrograde protein transport, ER to cytosol","type":"narrow"},{"name":"inhibition of retrograde protein transport, endoplasmic reticulum to cytosol","type":"narrow"},{"name":"negative regulation of protein dislocation from ER","type":"exact"},{"name":"negative regulation of protein retrotranslocation from ER","type":"exact"},{"name":"negative regulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"}],"termid":"GO:1904153"}


id: FYPO:0006358
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which chromatin remodeling, i.e. any dynamic structural change to chromatin, does not occur when the cell is subject to glucose starvation.","definition_xrefs":["GO:0006338","PMID:28674280","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal chromatin remodeling","termid":"FYPO:0006356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000641","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished chromatin remodeling during glucose starvation","synonyms":[{"name":"abolished chromatin modeling during glucose starvation","type":"exact"},{"name":"abolished chromatin remodeling during glucose depletion","type":"exact"},{"name":"abolished chromatin remodeling during glucose deprivation","type":"related"},{"name":"abolished chromatin remodeling during glucose limitation","type":"related"},{"name":"abolished chromatin remodelling during glucose starvation","type":"exact"},{"name":"chromatin remodeling during glucose starvation abolished","type":"exact"}],"termid":"FYPO:0006358"}


id: PBO:0068871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 111, pseudogene","termid":"PBO:0068871"}


id: GO:0007267
data:
  {"annotated_genes":["SJAG_00781"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111756],"is_not":false,"summary":null,"term":"GO:0007267"}]},"cv_name":"biological_process","definition":"Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.","definition_xrefs":["GOC:mah","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell communication","termid":"GO:0007154"},{"relation_name":"is_a","term_name":"signaling","termid":"GO:0023052"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00781":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"cell-cell signaling","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cell-cell signalling","type":"exact"}],"termid":"GO:0007267","terms_by_termid":{"GO:0007267":null}}


id: PBO:0042363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD160 molecule","termid":"PBO:0042363"}


id: PBO:0089452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrolipoamide S-acetyltransferase E2, Lat1","termid":"PBO:0089452"}


id: PBO:0085158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleotide exchange factor for Gsp1p; localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; suppressor of the pheromone response pathway; potentially phosphorylated by Cdc28p; human homolog of the RAN GEF, RCC1, can complement a temperature sensitive point mutant","termid":"PBO:0085158"}


id: PBO:0063534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDZ domain containing ring finger 3","termid":"PBO:0063534"}


id: GO:0007489
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The negative regulation of the differentiation of polytenized larval hypodermal cells from abdominal histoblasts. The abdominal histoblasts remain a small cluster of diploid cells among the polytenized larval hypodermal cells.","definition_xrefs":["ISBN:0879694238","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"part_of","term_name":"histoblast morphogenesis","termid":"GO:0007488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of imaginal histoblast diploidy","termid":"GO:0007489"}


id: GO:0006337
data:
  {"annotated_genes":["SJAG_01653","SJAG_04038","SJAG_02314"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86097,93157,113089],"is_not":false,"summary":null,"term":"GO:0006337"}]},"cv_name":"biological_process","definition":"The controlled breakdown of nucleosomes, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-DNA complex disassembly","termid":"GO:0032986"},{"relation_name":"is_a","term_name":"nucleosome organization","termid":"GO:0034728"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01653":null,"SJAG_02314":null,"SJAG_04038":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0006325","GO:0008150"],"is_obsolete":false,"name":"nucleosome disassembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0006337","terms_by_termid":{"GO:0006337":null}}


id: PR:O42928
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dbl6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42928"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16C6.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16C6.04","synonyms":[{"name":"Spom972h-dbl6","type":"exact"}],"termid":"PR:O42928"}


id: GO:0006592
data:
  {"annotated_genes":["SJAG_00695"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108067],"is_not":false,"summary":null,"term":"GO:0006592"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.","definition_xrefs":["GOC:jl","ISBN:0192801023"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ornithine metabolic process","termid":"GO:0006591"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid biosynthetic process","termid":"GO:0170043"},{"relation_name":"is_a","term_name":"alpha-amino acid biosynthetic process","termid":"GO:1901607"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00695":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"ornithine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ornithine anabolism","type":"exact"},{"name":"ornithine biosynthesis","type":"exact"},{"name":"ornithine formation","type":"exact"},{"name":"ornithine synthesis","type":"exact"}],"termid":"GO:0006592","terms_by_termid":{"GO:0006592":null}}


id: GO:0002761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of myeloid leukocyte differentiation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myeloid cell differentiation","termid":"GO:0045637"},{"relation_name":"is_a","term_name":"regulation of leukocyte differentiation","termid":"GO:1902105"},{"relation_name":"regulates","term_name":"myeloid leukocyte differentiation","termid":"GO:0002573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of myeloid leukocyte differentiation","termid":"GO:0002761"}


id: GO:1902853
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of nuclear migration during mitotic telophase.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:23087209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nuclear migration along microtubule","termid":"GO:1902839"},{"relation_name":"is_a","term_name":"regulation of nuclear migration during mitotic telophase","termid":"GO:1902852"},{"relation_name":"negatively_regulates","term_name":"nuclear migration during mitotic telophase","termid":"GO:0090561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of nuclear migration during mitotic telophase","synonyms":[{"name":"down regulation of nuclear migration during mitotic telophase","type":"exact"},{"name":"down-regulation of nuclear migration during mitotic telophase","type":"exact"},{"name":"downregulation of nuclear migration during mitotic telophase","type":"exact"},{"name":"inhibition of nuclear migration during mitotic telophase","type":"narrow"}],"termid":"GO:1902853"}


id: GO:0036280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a L-canavanine stimulus. L-canavanine is L-homoserine substituted at oxygen with a guanidino (carbamimidamido) group.","definition_xrefs":["GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to amino acid stimulus","termid":"GO:0071230"},{"relation_name":"is_a","term_name":"response to L-canavanine","termid":"GO:1901354"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to L-canavanine","termid":"GO:0036280"}


id: SO:0000068
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a gene that has a sequence that overlaps the sequence of another gene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_to_gene_feature","termid":"SO:0000067"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"overlapping","termid":"SO:0000068"}


id: PBO:0004803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stress responsive orphan 1","termid":"PBO:0004803"}


id: GO:0047769
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arogenate = L-phenylalanine + H2O + CO2.","definition_xrefs":["EC:4.2.1.91","MetaCyc:CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"arogenate dehydratase activity","secondary_identifiers":["RHEA:12536"],"synonyms":[{"name":"L-arogenate hydro-lyase (decarboxylating)","type":"related"},{"name":"L-arogenate hydro-lyase (decarboxylating; L-phenylalanine-forming)","type":"related"},{"name":"carboxycyclohexadienyl dehydratase activity","type":"exact"}],"termid":"GO:0047769"}


id: PBO:0089331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type ATPase V0 subunit d","termid":"PBO:0089331"}


id: PBO:0068957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 201, pseudogene","termid":"PBO:0068957"}


id: GO:0052319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phytoalexin biosynthesis, the chemical reactions and pathways resulting in the formation of phytoalexins.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular biosynthetic process","termid":"GO:0031326"},{"relation_name":"is_a","term_name":"regulation of phytoalexin metabolic process","termid":"GO:0052318"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"phytoalexin biosynthetic process","termid":"GO:0052315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"regulation of phytoalexin biosynthetic process","synonyms":[{"name":"regulation of phytoalexin biosynthesis","type":"exact"}],"termid":"GO:0052319"}


id: GO:0009822
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of alkaloids, nitrogen containing natural products not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases).","definition_xrefs":["GOC:lr","ISBN:0122146743"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"alkaloid metabolic process","termid":"GO:0009820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alkaloid catabolic process","synonyms":[{"name":"alkaloid breakdown","type":"exact"},{"name":"alkaloid catabolism","type":"exact"},{"name":"alkaloid degradation","type":"exact"}],"termid":"GO:0009822"}


id: PBO:0015678
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High Copy Sterile","termid":"PBO:0015678"}


id: GO:0003324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a pancreatic delta cell over time, from its formation to the mature structure. A delta cell is a cell of the pancreas that produces somatostatin.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glandular epithelial cell development","termid":"GO:0002068"},{"relation_name":"part_of","term_name":"pancreatic D cell differentiation","termid":"GO:0003311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreatic D cell development","synonyms":[{"name":"pancreatic delta cell development","type":"exact"}],"termid":"GO:0003324"}


id: FYPO:0004283
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of oxanine DNA N-glycosylase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA N-glycosylase activity","termid":"FYPO:0008216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000661","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"abnormal oxanine DNA N-glycosylase activity","termid":"FYPO:0004283"}


id: internal:interim
data:
  {"annotation_feature_type":"gene","cv_name":"synonym_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interim","termid":"internal:interim"}


id: GO:0006511
data:
  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id: GO:0030140
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id: PBO:0079113
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id: PBO:0040736
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id: MOD:01949
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id: PBO:0046031
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2 subunit alpha","termid":"PBO:0046031"}


id: GO:0106360
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id: FYPO:0007701
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id: GO:1905342
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id: PBO:0060814
data:
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id: PBO:0082922
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id: GO:0102040
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: fumarate + a menaquinol = succinate + a menaquinone.","definition_xrefs":["PMID:11850430","GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete fumarate reductase (menaquinone) (obsolete GO:0102040)","termid":"GO:0102040"}


id: PBO:0079234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 9","termid":"PBO:0079234"}


id: GO:1900868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sarcinapterin.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricarboxylic acid biosynthetic process","termid":"GO:0072351"},{"relation_name":"is_a","term_name":"sarcinapterin metabolic process","termid":"GO:1900867"},{"relation_name":"is_a","term_name":"methanopterin-containing compound biosynthetic process","termid":"GO:2001116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0042559"}],"interesting_parent_ids":["GO:0044281","GO:0042559","GO:0008150"],"is_obsolete":false,"name":"sarcinapterin biosynthetic process","synonyms":[{"name":"sarcinapterin anabolism","type":"exact"},{"name":"sarcinapterin biosynthesis","type":"exact"},{"name":"sarcinapterin formation","type":"exact"},{"name":"sarcinapterin synthesis","type":"exact"}],"termid":"GO:1900868"}


id: GO:1901796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"signal transduction by p53 class mediator","termid":"GO:0072331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of signal transduction by p53 class mediator","termid":"GO:1901796"}


id: FYPO:0005032
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which mutations occur at a normal (i.e. indistinguishable from wild type) frequency.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"},{"relation_name":"is_a","term_name":"vegetative cell phenotype","termid":"FYPO:0001320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal mutation rate","synonyms":[{"name":"normal mutation rate during mitotic cell cycle","type":"related"},{"name":"normal mutation rate during vegetative growth","type":"exact"}],"termid":"FYPO:0005032"}


id: PBO:0001049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MRG family Clr6 histone deacetylase complex subunit Alp13","termid":"PBO:0001049"}


id: PBO:0069797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1083, pseudogene","termid":"PBO:0069797"}


id: PBO:0041212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1D nuclear receptor corepressor","termid":"PBO:0041212"}


id: GO:0090017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of anterior end of the flat, thickened layer of ectodermal cells known as the neural plate.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"neural plate formation","termid":"GO:0021990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior neural plate formation","termid":"GO:0090017"}


id: PBO:0088255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exonuclease Rex3","termid":"PBO:0088255"}


id: PBO:0001971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase Ubp6","termid":"PBO:0001971"}


id: GO:0055034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the Bolwig's organ over time, from its formation to the mature structure. The larval eye in Drosophila is a relatively simple sensory system composed of Bolwig's organs: two clusters, each composed of 12 photoreceptor cells from which axons extend in a single fascicle to the brain.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye development","termid":"GO:0001654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Bolwig's organ development","termid":"GO:0055034"}


id: GO:0002501
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding of a peptide to the antigen binding groove of an MHC protein complex.","definition_xrefs":["ISBN:0781735149","GOC:add","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"MHC protein complex assembly","termid":"GO:0002396"},{"relation_name":"part_of","term_name":"antigen processing and presentation of peptide antigen","termid":"GO:0048002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"peptide antigen assembly with MHC protein complex","termid":"GO:0002501"}


id: PBO:0084734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial integral inner membrane protein; involved in membrane insertion of C-terminus of Cox2p, interacts genetically and physically with Cox18p; deletion mutant sensitive to the anti-Pneumocystis carinii drug pentamidine","termid":"PBO:0084734"}


id: PBO:0071786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribophorin II","termid":"PBO:0071786"}


id: PBO:0045628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 40 (pseudogene)","termid":"PBO:0045628"}


id: PBO:0089223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterol transfer protein Osh2","termid":"PBO:0089223"}


id: GO:1905511
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of myosin II filament assembly.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:27237792","PMID:7691416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of myosin II filament assembly","termid":"GO:0043520"},{"relation_name":"is_a","term_name":"positive regulation of myosin II filament organization","termid":"GO:1904901"},{"relation_name":"positively_regulates","term_name":"myosin II filament assembly","termid":"GO:0031036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0030036"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0030036","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"positive regulation of myosin II filament assembly","synonyms":[{"name":"activation of myosin II filament assembly","type":"narrow"},{"name":"activation of myosin II polymerization","type":"related"},{"name":"positive regulation of myosin II polymerization","type":"related"},{"name":"up regulation of myosin II filament assembly","type":"exact"},{"name":"up regulation of myosin II polymerization","type":"related"},{"name":"up-regulation of myosin II filament assembly","type":"exact"},{"name":"up-regulation of myosin II polymerization","type":"related"},{"name":"upregulation of myosin II filament assembly","type":"exact"},{"name":"upregulation of myosin II polymerization","type":"related"}],"termid":"GO:1905511"}


id: GO:1903459
data:
  {"annotated_genes":["SJAG_05197","SJAG_04877","SJAG_04190","SJAG_00814","SJAG_03495","SJAG_02818"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91288,98938,100349,101052,105253,114366],"is_not":false,"summary":null,"term":"GO:1903459"}]},"cv_name":"biological_process","definition":"Any lagging strand elongation that is involved in mitotic cell cycle DNA replication.","definition_xrefs":["GO_REF:0000060","GOC:TermGenie","PMID:1234","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lagging strand elongation","termid":"GO:0006273"},{"relation_name":"is_a","term_name":"DNA strand elongation involved in mitotic DNA replication","termid":"GO:1902983"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00814":null,"SJAG_02818":null,"SJAG_03495":null,"SJAG_04190":null,"SJAG_04877":null,"SJAG_05197":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0007049","GO:0006260"],"is_obsolete":false,"name":"mitotic DNA replication lagging strand elongation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"lagging strand elongation involved in DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"lagging strand elongation involved in DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"lagging strand elongation involved in DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"lagging strand elongation involved in mitotic DNA replication","type":"exact"},{"name":"lagging strand elongation involved in mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"lagging strand elongation involved in nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"}],"termid":"GO:1903459","terms_by_termid":{"GO:1903459":null}}


id: PATO:0001585
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conductivity","termid":"PATO:0001585"}


id: PBO:0087093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L8A; required for processing of 27SA3 pre-rRNA to 27SB during assembly of large subunit; binds Domain I of 25S, 5.8 S rRNAs; mutation results in decreased amounts of free 60S subunits; RPL8B has paralog RPL8A from whole genome duplication; RPL8A or RPL8B ribosomes not functionally interchangeable; proportions of Rpl8ap, Rpl8bp in 80S ribosome differ in glucose and glycerol; homologous to mammalian ribosomal protein L7A, no bacterial homolog","termid":"PBO:0087093"}


id: PR:Q10415
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial intermediate peptidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00249","PANTHER:PTHR11804:SF5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial intermediate peptidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F3.10c","secondary_identifiers":["UniProtKB:Q10415"],"synonyms":[{"name":"MIP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-MIPEP","type":"exact"},{"name":"octapeptidyl aminopeptidase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10415"}


id: GO:0150061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular amylin, or another ligand, combining with an amylin receptor 3 (AMY3), a G protein-coupled receptor complex, on the surface of the target cell. The AMY3 signaling pathway can also be initiated by the amyloid-beta complex. AMY3 signaling results in increased import of calcium ions into the cytosol across plasma membrane, increased phosphorylation of ERK1/2, Act, and a PKA regulatory subunit II, as well as increased expression of cFos.","definition_xrefs":["PMID:22500019","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylin receptor signaling pathway","termid":"GO:0097647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"amylin receptor 3 signaling pathway","synonyms":[{"name":"AMY3 signaling pathway","type":"exact"}],"termid":"GO:0150061"}


id: PBO:0086645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the Golgi apparatus; YCR043C is not an essential gene","termid":"PBO:0086645"}


id: PR:O94273
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A eukaryotic peptidyl-prolyl cis-trans isomerase B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-prolyl cis-trans isomerase B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.25","secondary_identifiers":["UniProtKB:O94273"],"synonyms":[{"name":"PPIase B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PPIB","type":"exact"},{"name":"cyclophilin 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"rotamase B (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94273"}


id: PBO:0072458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 22","termid":"PBO:0072458"}


id: GO:0050655
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dermatan sulfate proteoglycan, any glycoprotein whose glycosaminoglycan units are dermatan sulfate (chondroitin sulfate B). Dermatan sulfate is a glycosaminoglycan with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteoglycan metabolic process","termid":"GO:0006029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dermatan sulfate proteoglycan metabolic process","synonyms":[{"name":"chondroitin sulfate B proteoglycan metabolic process","type":"exact"},{"name":"chondroitin sulfate B proteoglycan metabolism","type":"exact"},{"name":"dermatan sulfate proteoglycan metabolism","type":"exact"},{"name":"dermatan sulphate proteoglycan metabolic process","type":"exact"},{"name":"dermatan sulphate proteoglycan metabolism","type":"exact"}],"termid":"GO:0050655"}


id: PBO:0061827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OFD1 pseudogene 17","termid":"PBO:0061827"}


id: GO:0102378
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: steviolmonoside + UDP-alpha-D-glucose = rubusoside + UDP.","definition_xrefs":["RHEA:61736"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"steviolmonoside glucosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13512"],"termid":"GO:0102378"}


id: GO:0110143
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane-bound organelle that envelops particles of magnetic iron minerals in magnetotactic bacteria. Magnetosomes form linear chains that align along the cellular motility axis at midcell and function in bacterial navigation along the Earth's magnetic field. They are formed by invagination of the cell inner membrane; in some species they remain connected to the inner membrane, in others they pinch off to form independent intracellular vesicles.","definition_xrefs":["GOC:aa","PMID:27620945"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"magnetosome","termid":"GO:0110143"}


id: GO:0046657
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of folic acid, pteroylglutamic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"folic acid-containing compound catabolic process","termid":"GO:0009397"},{"relation_name":"is_a","term_name":"water-soluble vitamin catabolic process","termid":"GO:0042365"},{"relation_name":"is_a","term_name":"dicarboxylic acid catabolic process","termid":"GO:0043649"},{"relation_name":"is_a","term_name":"folic acid metabolic process","termid":"GO:0046655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006766","GO:0044281"],"is_obsolete":false,"name":"folic acid catabolic process","synonyms":[{"name":"folate catabolic process","type":"exact"},{"name":"folate catabolism","type":"exact"},{"name":"folic acid breakdown","type":"exact"},{"name":"folic acid catabolism","type":"exact"},{"name":"folic acid degradation","type":"exact"},{"name":"vitamin B9 catabolic process","type":"exact"},{"name":"vitamin B9 catabolism","type":"exact"},{"name":"vitamin M catabolic process","type":"exact"},{"name":"vitamin M catabolism","type":"exact"}],"termid":"GO:0046657"}


id: PBO:0012605
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae TPI1","termid":"PBO:0012605"}


id: PBO:0108974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm microtubule associated protein 1","termid":"PBO:0108974"}


id: GO:0015007
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A molecular entity that serves as an electron acceptor and electron donor in a chlorophyll electron transport system.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete electron carrier, chlorophyll electron transport system (obsolete GO:0015007)","synonyms":[{"name":"chlorophyll electron carrier","type":"related"},{"name":"electron carrier, chlorophyll electron transport system","type":"exact"}],"termid":"GO:0015007"}


id: GO:0051523
data:
  {"annotated_genes":["SJAG_04724","SJAG_02838","SJAG_03705","SJAG_01456","SJAG_00216","SJAG_03486","SJAG_04322"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84089,95828,99605,102978,106908,112664,114093],"is_not":false,"summary":null,"term":"GO:0051523"}]},"cv_name":"biological_process","definition":"The process in which a cell switches from monopolar cell growth to bipolar cell growth.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of bipolar cell polarity","termid":"GO:0061171"},{"relation_name":"is_a","term_name":"regulation of direction of cell growth","termid":"GO:0061389"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00216":null,"SJAG_01456":null,"SJAG_02838":null,"SJAG_03486":null,"SJAG_03705":null,"SJAG_04322":null,"SJAG_04724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007163"],"is_obsolete":false,"name":"cell growth mode switching, monopolar to bipolar","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NETO","type":"narrow"},{"name":"new end take off","type":"narrow"}],"termid":"GO:0051523","terms_by_termid":{"GO:0051523":null}}


id: GO:0005281
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete general amino acid permease activity (obsolete GO:0005281)","synonyms":[{"name":"general amino acid permease activity","type":"exact"},{"name":"general amino acid transporter","type":"broad"}],"termid":"GO:0005281"}


id: GO:0021625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the oculomotor nerve to attain its fully functional state. This motor nerve innervates all extraocular muscles except the superior oblique and the lateral rectus muscles. The superior division supplies the levator palpebrae superioris and superior rectus muscles. The inferior division supplies the medial rectus, inferior rectus and inferior oblique muscles. This nerve also innervates the striated muscles of the eyelid. Pupillary constriction and lens movement are mediated by this nerve for near vision. In the orbit the inferior division sends branches that enter the ciliary ganglion where they form functional contacts (synapses) with the ganglion cells. The ganglion cells send nerve fibers into the back of the eye where they travel to ultimately innervate the ciliary muscle and the constrictor pupillae muscle.","definition_xrefs":["ISBN:0838580343","GOC:dph","GO_REF:0000021","GOC:cls","GOC:jid","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve maturation","termid":"GO:0021605"},{"relation_name":"part_of","term_name":"oculomotor nerve development","termid":"GO:0021557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oculomotor nerve maturation","synonyms":[{"name":"CN III maturation","type":"related"}],"termid":"GO:0021625"}


id: GO:1903680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of an acinar cell of sebaceous gland.","definition_xrefs":["GO_REF:0000086","GOC:TermGenie","PMID:19944183","PMID:17018284","PMID:18334552"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sebaceous gland cell differentiation","termid":"GO:0001949"},{"relation_name":"is_a","term_name":"acinar cell differentiation","termid":"GO:0090425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acinar cell of sebaceous gland differentiation","synonyms":[{"name":"sebocyte differentiation","type":"exact"}],"termid":"GO:1903680"}


id: PBO:0065070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRICKLE1 pseudogene 1","termid":"PBO:0065070"}


id: GO:0099055
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of postsynaptic membrane (obsolete GO:0099055)","termid":"GO:0099055"}


id: PBO:0072480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 9","termid":"PBO:0072480"}


id: GO:0006798
data:
  {"annotated_genes":["SJAG_00132","SJAG_03964","SJAG_00570"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91849,107945,112028],"is_not":false,"summary":null,"term":"GO:0006798"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a polyphosphate, the anion or salt of polyphosphoric acid.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyphosphate metabolic process","termid":"GO:0006797"},{"relation_name":"is_a","term_name":"cellular catabolic process","termid":"GO:0044248"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00132":null,"SJAG_00570":null,"SJAG_03964":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"polyphosphate catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"polyphosphate breakdown","type":"exact"},{"name":"polyphosphate catabolism","type":"exact"},{"name":"polyphosphate degradation","type":"exact"}],"termid":"GO:0006798","terms_by_termid":{"GO:0006798":null}}


id: SO:0001792
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that changes non-coding exon sequence in a non-coding transcript.","definition_xrefs":["EBI:fc","SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non_coding_transcript_variant","termid":"SO:0001619"},{"relation_name":"is_a","term_name":"exon_variant","termid":"SO:0001791"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_coding_transcript_exon_variant","secondary_identifiers":["http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp"],"synonyms":[{"name":"ANNOVAR:ncRNA_exonic","type":"narrow"},{"name":"Jannovar:non_coding_transcript_exon_variant","type":"narrow"},{"name":"Seattleseq:non-coding-exon","type":"exact"},{"name":"Seattleseq:non-coding-exon-near-splice","type":"related"},{"name":"VEP:non_coding_transcript_exon_variant","type":"exact"},{"name":"non coding transcript exon variant","type":"exact"},{"name":"non_coding_transcript_exon_variant","type":"exact"},{"name":"snpEff:non_coding_exon_variant","type":"exact"}],"termid":"SO:0001792"}


id: GO:0070533
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the BRCA1-BARD1 heterodimer, CtIP and Mre11/Rad50/NBS1 (M/R/N) complex, and binds to DNA at DNA damage sites. BRCA1-C binding ta damaged DNA is required for DNA damage-induced Chk1 phosphorylation and the G2/M transition checkpoint.","definition_xrefs":["PMID:15485915","PMID:16391231","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"BRCA1-C complex","termid":"GO:0070533"}


id: PBO:0072241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S20 pseudogene 16","termid":"PBO:0072241"}


id: PBO:0064812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2","termid":"PBO:0064812"}


id: GO:0042016
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with interleukin-20 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"interleukin-20 receptor activity","synonyms":[{"name":"IL-20 receptor activity","type":"exact"},{"name":"IL-20R","type":"exact"}],"termid":"GO:0042016"}


id: CHEBI:18420
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A magnesium cation that has formula Mg.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnesium(2+)","secondary_identifiers":["CHEBI:13379","CHEBI:6635","CHEBI:25112","CHEBI:49736"],"termid":"CHEBI:18420"}


id: GO:0018644
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: toluene + H+ + NADH + O2 = 2-hydroxytoluene + H2O + NAD+.","definition_xrefs":["RHEA:20349"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"toluene 2-monooxygenase activity","secondary_identifiers":["EC:1.14.13.243","MetaCyc:TOLUENE-2-MONOOXYGENASE-RXN","UM-BBD_enzymeID:r0260"],"termid":"GO:0018644"}


id: GO:1905397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in an activated CD8-positive, alpha-beta T cell.","definition_xrefs":["PMID:24187568","GO_REF:0000085","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell apoptotic process","termid":"GO:0070231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"activated CD8-positive, alpha-beta T cell apoptotic process","synonyms":[{"name":"activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"}],"termid":"GO:1905397"}


id: PBO:0040293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP2A1 antisense RNA 1","termid":"PBO:0040293"}


id: FYPO:0003494
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to L-azetidine-2-carboxylic acid. Cells stop growing (and may die) at a concentration of L-azetidine-2-carboxylic acid that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0005447","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to L-azetidine-2-carboxylic acid","synonyms":[{"name":"hypersensitive to L-azetidine-2-carboxylic acid","type":"exact"},{"name":"sensitive to (S)-azetidine-2-carboxylic acid","type":"exact"},{"name":"sensitive to AZC","type":"broad"},{"name":"sensitive to L-azetidine-2-carboxylic acid during mitotic cell cycle","type":"related"},{"name":"sensitive to L-azetidine-2-carboxylic acid during vegetative growth","type":"exact"}],"termid":"FYPO:0003494"}


id: GO:0016087
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The action characteristic of ecdysiostatic hormone, a peptide hormone that inhibits ecdysone secretion.","definition_xrefs":["GOC:mah","DOI:10.1002/(SICI)1520-6327(1997)35:1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide hormone activity","termid":"GO:0005184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0005488","GO:0005515","GO:0140677"],"is_obsolete":false,"name":"ecdysiostatic hormone activity","termid":"GO:0016087"}


id: GO:1900678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ferricrocin biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ferrichrome biosynthetic process","termid":"GO:1905568"},{"relation_name":"regulates","term_name":"ferricrocin biosynthetic process","termid":"GO:0031171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"regulation of ferricrocin biosynthetic process","synonyms":[{"name":"regulation of ferricrocin anabolism","type":"exact"},{"name":"regulation of ferricrocin biosynthesis","type":"exact"},{"name":"regulation of ferricrocin biosynthetic process, peptide formation","type":"narrow"},{"name":"regulation of ferricrocin biosynthetic process, peptide modification","type":"narrow"},{"name":"regulation of ferricrocin formation","type":"exact"},{"name":"regulation of ferricrocin synthesis","type":"exact"}],"termid":"GO:1900678"}


id: GO:0044216
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A cell of a secondary organism with which the first organism is interacting.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete other organism cell (obsolete GO:0044216)","termid":"GO:0044216"}


id: GO:0031283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of guanylate cyclase activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cyclase activity","termid":"GO:0031280"},{"relation_name":"is_a","term_name":"regulation of guanylate cyclase activity","termid":"GO:0031282"},{"relation_name":"is_a","term_name":"negative regulation of lyase activity","termid":"GO:0051350"},{"relation_name":"is_a","term_name":"negative regulation of purine nucleotide biosynthetic process","termid":"GO:1900372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0055086"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"negative regulation of guanylate cyclase activity","synonyms":[{"name":"down regulation of guanylate cyclase activity","type":"exact"},{"name":"down-regulation of guanylate cyclase activity","type":"exact"},{"name":"downregulation of guanylate cyclase activity","type":"exact"},{"name":"inhibition of guanylate cyclase activity","type":"narrow"}],"termid":"GO:0031283"}


id: PBO:0066039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAN pseudogene 8","termid":"PBO:0066039"}


id: GO:0003103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of diuresis. Diuresis is the process of renal water excretion.","definition_xrefs":["GOC:mtg_cardio"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of diuresis (obsolete GO:0003103)","synonyms":[{"name":"positive regulation of diuresis","type":"exact"}],"termid":"GO:0003103"}


id: FYPO:0007166
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the cell cortex does not occur during prophase of the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to cell cortex during meiotic cell cycle","termid":"FYPO:0007165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to cell cortex during meiotic prophase I","synonyms":[{"name":"abolished protein localization to cell cortex during prophase I","type":"exact"},{"name":"protein absent from cell cortex during meiotic prophase I","type":"related"},{"name":"protein localization to cell cortex abolished during meiotic prophase I","type":"exact"}],"termid":"FYPO:0007166"}


id: GO:0000703
data:
  {"annotated_genes":["SJAG_03724"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92212],"is_not":false,"summary":null,"term":"GO:0000703"},{"annotations":[92206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034042"},{"annotations":[92207],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034043"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal oxidized pyrimidine bases by cleaving the N-C1' glycosidic bond between the oxidized pyrimidine and the deoxyribose sugar. The reaction involves formation of a covalent enzyme-pyrimidine base intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apyrimidinic (AP) site.","definition_xrefs":["PMID:11554296","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidized base lesion DNA N-glycosylase activity","termid":"GO:0000702"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016798","GO:0016787","GO:0003674","GO:0003824","GO:0140097"],"is_obsolete":false,"name":"oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0019004","Reactome:R-HSA-110226","Reactome:R-HSA-110227","Reactome:R-HSA-110224"],"synonyms":[{"name":"DNA glycosylase/AP-lyase","type":"broad"},{"name":"DNA glycosylase/beta-lyase","type":"broad"},{"name":"bifunctional DNA glycosylase","type":"broad"},{"name":"endodeoxyribonuclease III","type":"related"},{"name":"endonuclease III","type":"related"},{"name":"endonuclease VIII activity","type":"related"},{"name":"oxidized pyrimidine base lesion DNA N-glycosylase activity","type":"exact"},{"name":"pyrimidine-specific oxidized base lesion DNA N-glycosylase activity","type":"related"}],"termid":"GO:0000703","terms_by_termid":{"GO:0000703":null,"GO:0034042":null,"GO:0034043":null}}


id: FYPO:0001701
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to bortezomib. Cells stop growing (and may die) at a concentration of bortezomib that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to bortezomib","synonyms":[{"name":"hypersensitive to bortezomib","type":"exact"},{"name":"sensitive to Velcade","type":"exact"},{"name":"sensitive to bortezomib during mitotic cell cycle","type":"related"},{"name":"sensitive to bortezomib during vegetative growth","type":"exact"}],"termid":"FYPO:0001701"}


id: PBO:0088542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Sec22","termid":"PBO:0088542"}


id: PBO:0054417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1813","termid":"PBO:0054417"}


id: PBO:0041278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1q and TNF related 4","termid":"PBO:0041278"}


id: PBO:0035969
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H4-K20_methylation_during_vegetative_growth","termid":"PBO:0035969"}


id: PBO:0041660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium voltage-gated channel auxiliary subunit gamma 5","termid":"PBO:0041660"}


id: MOD:00803
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-tyrosine residue by a thioether bond to form 3-(S-L-cysteinyl)-L-tyrosine.","definition_xrefs":["PubMed:15342250","RESID:AA0396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-carbon thioether crosslinked residues","termid":"MOD:01993"},{"relation_name":"is_a","term_name":"crosslinked L-tyrosine residue","termid":"MOD:02058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-(S-L-cysteinyl)-L-tyrosine","synonyms":[{"name":"(2S,3R)-2-amino-3-([(2R)-2-amino-2-carboxyethyl]sulfanyl)-3-(4-hydroxyphenyl)propanoic acid","type":"exact"},{"name":"2-amino-3-(2-amino-2-carboxyethylthio)-3-(4-hydroxyphenyl)propanoic acid","type":"exact"},{"name":"3-(L-cystein-S-yl)-L-tyrosine","type":"exact"},{"name":"CROSSLNK 3-(S-cysteinyl)-tyrosine (Cys-Tyr)","type":"exact"},{"name":"S-(tyros-3'-yl)cysteine","type":"exact"},{"name":"XLNKSCys3Tyr","type":"exact"}],"termid":"MOD:00803"}


id: GO:0090583
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + D-sorbitol(out) = protein cysteine + D-sorbitol-1-phosphate(in).","definition_xrefs":["PMID:8875915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-phosphocysteine-sugar phosphotransferase activity","termid":"GO:0090563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0005215","GO:0003824","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"protein-phosphocysteine-D-sorbitol-phosphotransferase system transporter activity","termid":"GO:0090583"}


id: GO:0023022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The signaling process in which T cell signal transduction is brought to an end rather than being reversibly modulated.","definition_xrefs":["GOC:mtg_signal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"termination of signal transduction","termid":"GO:0023021"},{"relation_name":"is_a","term_name":"negative regulation of T cell receptor signaling pathway","termid":"GO:0050860"},{"relation_name":"part_of","term_name":"T cell receptor signaling pathway","termid":"GO:0050852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"termination of T cell signal transduction","termid":"GO:0023022"}


id: PBO:0048110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-L-fucosidase 2","termid":"PBO:0048110"}


id: PR:O94260
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nxt3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G3BP-like protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.11","synonyms":[{"name":"Spom972h-nxt3","type":"exact"}],"termid":"PR:O94260"}


id: GO:2001108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of Rho guanyl-nucleotide exchange factor activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of guanyl-nucleotide exchange factor activity","termid":"GO:1905099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of Rho guanyl-nucleotide exchange factor activity","synonyms":[{"name":"positive regulation of Rho guanine nucleotide exchange factor","type":"exact"},{"name":"positive regulation of RhoGEF","type":"exact"}],"termid":"GO:2001108"}


id: PBO:0031622
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rate_of_sporulation","termid":"PBO:0031622"}


id: PR:O59786
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ferrochelatase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04207","PANTHER:PTHR11108:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferrochelatase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC320.09","secondary_identifiers":["UniProtKB:O59786"],"synonyms":[{"name":"Spom972h-FECH","type":"exact"},{"name":"heme synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"protoheme ferro-lyase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59786"}


id: FYPO:0001325
data:
  {"alleles_by_uniquename":{"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[115487,115488,115486],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001327"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered protein level","termid":"FYPO:0000834"},{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01956":null,"SJAG_03198":null,"SJAG_03351":null,"SJAG_03575":null},"genotype_count":3,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"altered protein level during vegetative growth","references_by_uniquename":{"PMID:23786411":null},"single_locus_annotated_genes":["SJAG_03351","SJAG_03575","SJAG_01956"],"single_locus_genotype_uniquenames":["apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal protein level during vegetative growth","type":"exact"},{"name":"altered cellular protein level during vegetative growth","type":"exact"},{"name":"altered protein level during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001325","terms_by_termid":{"FYECO:0000006":null,"FYECO:0000137":null,"FYPO:0001327":null}}


id: PBO:0075846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSU72 pseudogene 1","termid":"PBO:0075846"}


id: PBO:0076905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 261","termid":"PBO:0076905"}


id: GO:0043354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for an enucleate erythrocyte to attain its fully functional state. An enucleate erythrocyte is an erythrocyte without a nucleus.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"erythrocyte maturation","termid":"GO:0043249"},{"relation_name":"part_of","term_name":"enucleate erythrocyte development","termid":"GO:0048822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"enucleate erythrocyte maturation","synonyms":[{"name":"enucleate RBC maturation","type":"exact"},{"name":"enucleate red blood cell maturation","type":"exact"}],"termid":"GO:0043354"}


id: PBO:0052439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin light chain 4","termid":"PBO:0052439"}


id: PBO:0080211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Hippel-Lindau tumor suppressor","termid":"PBO:0080211"}


id: PBO:0046646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 27","termid":"PBO:0046646"}


id: PBO:0027662
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_proteasomal_ubiquitin-dependent_protein_degradation","termid":"PBO:0027662"}


id: PBO:0114072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily A member 2, pseudogene","termid":"PBO:0114072"}


id: PBO:0086729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; not conserved in closely related Saccharomyces species; 85% of ORF overlaps verified gene NET1, but does not share all phenotypes; null mutant is slow-growing, sensitive to heat, sorbate, and other various chemicals","termid":"PBO:0086729"}


id: GO:0106101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained at, a location in a peroxisome via the endoplasmic reticulum.","definition_xrefs":["PMID:19479899","GOC:pga","PMID:26408931"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to peroxisome","termid":"GO:0072662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007031"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0007031"],"is_obsolete":false,"name":"ER-dependent peroxisome localization","termid":"GO:0106101"}


id: PBO:0049595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 clustered histone 13","termid":"PBO:0049595"}


id: PBO:0110382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLHL5 pseudogene 1","termid":"PBO:0110382"}


id: PBO:0084923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Monoglyceride lipase (MGL) that hydrolyzes fatty acid ethyl esters; required for removal of toxic metabolites in ethanol producing yeast cells; localizes to lipid particles and membranes; member of the eukaryotic serine hydrolase family; functional ortholog of mammalian MGL","termid":"PBO:0084923"}


id: PBO:0029853
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H4-K5,_H4-K8,_H4-K12_and_H4-K16_acetylation_at_centromere_outer_repeat","termid":"PBO:0029853"}


id: GO:2000812
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of barbed-end actin filament capping.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of actin filament polymerization","termid":"GO:0030833"},{"relation_name":"is_a","term_name":"regulation of actin filament depolymerization","termid":"GO:0030834"},{"relation_name":"regulates","term_name":"barbed-end actin filament capping","termid":"GO:0051016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0007010","GO:0030036","GO:0044085"],"is_obsolete":false,"name":"regulation of barbed-end actin filament capping","synonyms":[{"name":"regulation of barbed-end F-actin capping activity","type":"exact"},{"name":"regulation of barbed-end actin capping activity","type":"exact"},{"name":"regulation of plus-end F-actin capping activity","type":"exact"},{"name":"regulation of plus-end actin filament capping activity","type":"exact"}],"termid":"GO:2000812"}


id: FYPO:0003543
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the number of sites of double-strand breaks in DNA is greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased DNA damage","termid":"FYPO:0003546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"increased number of double-strand break sites","synonyms":[{"name":"accumulation of DNA damage foci","type":"related"},{"name":"accumulation of double-strand break sites","type":"exact"},{"name":"increased number of DNA damage foci","type":"related"}],"termid":"FYPO:0003543"}


id: GO:1901676
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of histone H3-K27 acetylation.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H3-K27 acetylation (obsolete GO:1901676)","synonyms":[{"name":"activation of histone H3 acetylation at K27","type":"exact"},{"name":"activation of histone H3-K27 acetylation","type":"narrow"},{"name":"activation of histone H3K27 acetylation","type":"exact"},{"name":"positive regulation of histone H3 acetylation at K27","type":"exact"},{"name":"positive regulation of histone H3K27 acetylation","type":"exact"},{"name":"up regulation of histone H3 acetylation at K27","type":"exact"},{"name":"up regulation of histone H3-K27 acetylation","type":"exact"},{"name":"up regulation of histone H3K27 acetylation","type":"exact"},{"name":"up-regulation of histone H3 acetylation at K27","type":"exact"},{"name":"up-regulation of histone H3-K27 acetylation","type":"exact"},{"name":"up-regulation of histone H3K27 acetylation","type":"exact"},{"name":"upregulation of histone H3 acetylation at K27","type":"exact"},{"name":"upregulation of histone H3-K27 acetylation","type":"exact"},{"name":"upregulation of histone H3K27 acetylation","type":"exact"}],"termid":"GO:1901676"}


id: PBO:0058698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6826","termid":"PBO:0058698"}


id: PBO:0060733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDUFAF2 pseudogene 2","termid":"PBO:0060733"}


id: SO:0001966
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_cytosine","termid":"SO:0001963"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_carboxylcytosine","secondary_identifiers":["http:http\\://www.pacificbiosciences.com/pdf/WP_Detecting_DNA_Base_Modifications_Using_SMRT_Sequencing.pdf"],"synonyms":[{"name":"5-caC","type":"exact"},{"name":"5-carboxycytosine","type":"exact"}],"termid":"SO:0001966"}


id: RO:0002446
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A biotic interaction relationship in which one partner is an organism and the other partner is inorganic. For example, the relationship between a sponge and the substrate to which is it anchored.","direct_ancestors":[{"relation_name":"is_a","term_name":"biotically_interacts_with","termid":"RO:0002437"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"participates_in_a_abiotic-biotic_interaction_with","synonyms":[{"name":"semibiotically interacts with","type":"related"}],"termid":"RO:0002446"}


id: GO:2000825
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of androgen receptor activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transcription by RNA polymerase II","termid":"GO:0006357"},{"relation_name":"is_a","term_name":"positive regulation of DNA-binding transcription factor activity","termid":"GO:0051091"},{"relation_name":"is_a","term_name":"positive regulation of signaling receptor activity","termid":"GO:2000273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0010467","GO:0006355","GO:0008150","GO:0023052","GO:0006351"],"is_obsolete":false,"name":"positive regulation of androgen receptor activity","termid":"GO:2000825"}


id: GO:0042972
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic linkages in beta-D-glucans containing (1->3) and (1->4) bonds.","definition_xrefs":["EC:3.2.1.73"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016787","GO:0016798","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"licheninase activity","secondary_identifiers":["MetaCyc:3.2.1.73-RXN"],"synonyms":[{"name":"1,3-1,4-beta-D-glucan 4-glucanohydrolase activity","type":"exact"},{"name":"1,3-1,4-beta-glucan 4-glucanohydrolase activity","type":"exact"},{"name":"1,3;1,4-beta-glucan 4-glucanohydrolase activity","type":"related"},{"name":"1,3;1,4-beta-glucan endohydrolase activity","type":"related"},{"name":"beta-(1->3), (1->4)-D-glucan 4-glucanohydrolase activity","type":"related"},{"name":"beta-glucanase activity","type":"broad"},{"name":"endo-beta-1,3-1,4 glucanase activity","type":"related"},{"name":"lichenase activity","type":"exact"},{"name":"mixed linkage beta-glucanase activity","type":"related"}],"termid":"GO:0042972"}


id: FYPO:0006072
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the addition of one or more uridylyl residues to the 3' end of a small RNA (sRNA) molecule does not occur.","definition_xrefs":["PMID:28541282","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA processing","termid":"FYPO:0001553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0006551","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished small RNA 3' uridylation","synonyms":[{"name":"abolished sRNA 3' uridylation","type":"exact"},{"name":"abolished small RNA 3' uridylation during mitotic cell cycle","type":"related"},{"name":"abolished small RNA 3' uridylation during vegetative growth","type":"exact"},{"name":"abolished small regulatory RNA 3' uridylation","type":"exact"},{"name":"small RNA 3' uridylation abolished","type":"exact"}],"termid":"FYPO:0006072"}


id: PBO:0047657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase 9","termid":"PBO:0047657"}


id: PBO:0076065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STPG2 antisense RNA 1","termid":"PBO:0076065"}


id: PBO:0047859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(1)(p31)","termid":"PBO:0047859"}


id: PR:O94591
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC622.01c gene.","definition_xrefs":["UniProtKB:O94591","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C622.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC622.01c","synonyms":[{"name":"Spom972h-SPCC622.01c","type":"exact"}],"termid":"PR:O94591"}


id: PBO:0053202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galectin 1","termid":"PBO:0053202"}


id: PBO:0046748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex component 3 like 4","termid":"PBO:0046748"}


id: FYPO:0004471
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in the nucleolus is observed there during telophase of mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to nucleus during vegetative growth","termid":"FYPO:0000784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"protein mislocalized to nucleolus during mitotic telophase","synonyms":[{"name":"ectopic protein localization to nucleolus during mitotic telophase","type":"exact"},{"name":"protein mislocalised to nucleolus during mitotic telophase","type":"exact"},{"name":"protein mislocalised to nucleolus during telophase during vegetative growth","type":"exact"},{"name":"protein mislocalized to nucleolus during mitotic telophase during vegetative growth","type":"exact"},{"name":"protein mislocalized to nucleolus during telophase of mitosis","type":"exact"}],"termid":"FYPO:0004471"}


id: PBO:0050510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox C10","termid":"PBO:0050510"}


id: PBO:0028237
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_nucleus","termid":"PBO:0028237"}


id: PBO:0089935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Shy1","termid":"PBO:0089935"}


id: PBO:0058371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4743","termid":"PBO:0058371"}


id: PBO:0061024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein interacting with the FHA domain of MKI67 pseudogene 7","termid":"PBO:0061024"}


id: GO:0006676
data:
  {"annotated_genes":["SJAG_00506"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93576],"is_not":false,"summary":null,"term":"GO:0006676"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving mannosyl diphosphorylinositol ceramide, any lipid with a phosphodiester bridge between an inositol residue and the ceramide group which contains two phosphoryl (-P(O)=) groups and a mannose derivative.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GPI anchor metabolic process","termid":"GO:0006505"},{"relation_name":"is_a","term_name":"inositol phosphoceramide metabolic process","termid":"GO:0006673"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00506":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"mannosyl diphosphorylinositol ceramide metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"M(IP)2C metabolic process","type":"exact"},{"name":"M(IP)2C metabolism","type":"exact"},{"name":"mannosyl diphosphorylinositol ceramide metabolism","type":"exact"}],"termid":"GO:0006676","terms_by_termid":{"GO:0006676":null}}


id: PBO:0077035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THO complex subunit 3","termid":"PBO:0077035"}


id: PBO:0017599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase, human RNF family homolog","termid":"PBO:0017599"}


id: PBO:0080481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 1","termid":"PBO:0080481"}


id: PBO:0068077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 383","termid":"PBO:0068077"}


id: MOD:00972
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to a monobrominated L-phenylalanine, such as L-2'-bromophenylalanine.","definition_xrefs":["Unimod:340#F"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogenated phenylalanine","termid":"MOD:01066"},{"relation_name":"is_a","term_name":"monobrominated residue","termid":"MOD:01912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monobrominated L-phenylalanine","synonyms":[{"name":"Br1Phe","type":"exact"},{"name":"Bromo","type":"related"},{"name":"bromination","type":"related"}],"termid":"MOD:00972"}


id: GO:0150119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to cell-cell junction.","definition_xrefs":["GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to cell-cell junction","termid":"GO:0150106"},{"relation_name":"is_a","term_name":"negative regulation of protein localization","termid":"GO:1903828"},{"relation_name":"negatively_regulates","term_name":"protein localization to cell-cell junction","termid":"GO:0150105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to cell-cell junction","synonyms":[{"name":"negative regulation of protein localisation to cell-cell junction","type":"exact"}],"termid":"GO:0150119"}


id: PBO:0051971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interacts with SUPT6H, CTD assembly factor 1","termid":"PBO:0051971"}


id: FYPO:0002932
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of mature snoRNA measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered snoRNA or precursor level","termid":"FYPO:0005998"},{"relation_name":"is_a","term_name":"decreased mature ncRNA level","termid":"FYPO:0006466"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased mature snoRNA level","synonyms":[{"name":"decreased mature small nucleolar RNA level","type":"exact"},{"name":"decreased mature snoRNA accumulation","type":"related"},{"name":"decreased mature snoRNA level during mitotic cell cycle","type":"related"},{"name":"decreased mature snoRNA level during vegetative growth","type":"exact"},{"name":"decreased mature snoRNA transcript level","type":"broad"},{"name":"decreased snoRNA level","type":"broad"},{"name":"reduced mature snoRNA level","type":"exact"}],"termid":"FYPO:0002932"}


id: GO:0017076
data:
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id: SO:0000427
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The R segment of the three-prime long terminal repeat.","direct_ancestors":[{"relation_name":"is_a","term_name":"R_LTR_region","termid":"SO:0000423"},{"relation_name":"is_a","term_name":"five_prime_LTR_component","termid":"SO:0000850"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R_five_prime_LTR_region","synonyms":[{"name":"R 5' long term repeat region","type":"exact"},{"name":"R five prime LTR region","type":"exact"}],"termid":"SO:0000427"}


id: PATO:0002289
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae.","definition_xrefs":["ISBN:0913424137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hairy","termid":"PATO:0000454"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"setose","termid":"PATO:0002289"}


id: GO:0017122
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of protein N-acetylglucosaminyltransferase activity, the addition of nucleotide-activated sugars onto the polypeptide according to reaction: UDP-N-acetyl-D-glucosamine + protein = UDP + 4-N-(N-acetyl-D-glucosaminyl)-protein. The complex has different compositions in different species: In mammals it is often a homotrimer, in bacteria a heterotetramer of 2 different subunits.","definition_xrefs":["PMID:15247246"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"protein N-acetylglucosaminyltransferase complex","synonyms":[{"name":"O-GlcNAc transferase complex","type":"exact"},{"name":"UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase","type":"exact"}],"termid":"GO:0017122"}


id: GO:1990339
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A laminin complex composed of alpha5, beta2 and gamma2 polypeptide chains.","definition_xrefs":["GOC:bhm","PMID:17453709","PMID:15979864","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminin complex","termid":"GO:0043256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"laminin-522 complex","synonyms":[{"name":"laminin-522","type":"exact"}],"termid":"GO:1990339"}


id: PBO:0080262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 25 pseudogene","termid":"PBO:0080262"}


id: GO:0061075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of neural retina development, the progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neural retina development","termid":"GO:0061074"},{"relation_name":"is_a","term_name":"positive regulation of retina development in camera-type eye","termid":"GO:1902868"},{"relation_name":"positively_regulates","term_name":"neural retina development","termid":"GO:0003407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neural retina development","termid":"GO:0061075"}


id: GO:0050692
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein's DNA binding domain (DBD).","definition_xrefs":["PMID:9682036"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"DNA binding domain binding","synonyms":[{"name":"DBD binding","type":"exact"}],"termid":"GO:0050692"}


id: PBO:0058315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4688","termid":"PBO:0058315"}


id: PBO:0081743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 674","termid":"PBO:0081743"}


id: GO:0034581
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4-methyloct-2-enoyl-CoA + H2O = 3-hydroxy-4-methyloctanoyl-CoA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-methyloct-2-enoyl-CoA hydratase activity (obsolete GO:0034581)","termid":"GO:0034581"}


id: PBO:0055741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LMX1A antisense RNA 1","termid":"PBO:0055741"}


id: GO:0160081
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the energy-independent facilitated diffusion of iodide through a transmembrane aqueous pore or channel.","definition_xrefs":["PMID:34910516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion channel activity","termid":"GO:0005253"},{"relation_name":"is_a","term_name":"iodide transmembrane transporter activity","termid":"GO:0015111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"iodide channel activity","secondary_identifiers":["RHEA:66324"],"termid":"GO:0160081"}


id: GO:0031551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of brain-derived neurotrophic factor-activated receptor activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signaling receptor activity","termid":"GO:0010469"},{"relation_name":"is_a","term_name":"regulation of protein tyrosine kinase activity","termid":"GO:0061097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of brain-derived neurotrophic factor-activated receptor activity","synonyms":[{"name":"regulation of BDNF receptor activity","type":"exact"},{"name":"regulation of brain-derived neurotrophic factor receptor activity","type":"exact"}],"termid":"GO:0031551"}


id: GO:0042415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving norepinephrine, a hormone secreted by the adrenal medulla, and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts in the central nervous system. It is also the demethylated biosynthetic precursor of epinephrine.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catecholamine metabolic process","termid":"GO:0006584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"norepinephrine metabolic process","synonyms":[{"name":"levarterenol metabolic process","type":"exact"},{"name":"levarterenol metabolism","type":"exact"},{"name":"noradrenaline metabolic process","type":"exact"},{"name":"noradrenaline metabolism","type":"exact"},{"name":"norepinephrine metabolism","type":"exact"}],"termid":"GO:0042415"}


id: GO:1905024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of membrane repolarization during ventricular cardiac muscle cell action potential.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:19893015","GOC:BHF","GOC:mtg_cardiac_conduct_nov11","GOC:BHF_miRNA","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ventricular cardiac muscle cell membrane repolarization","termid":"GO:0060307"},{"relation_name":"is_a","term_name":"regulation of membrane repolarization during cardiac muscle cell action potential","termid":"GO:1905031"},{"relation_name":"regulates","term_name":"membrane repolarization during ventricular cardiac muscle cell action potential","termid":"GO:0098915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of membrane repolarization during ventricular cardiac muscle cell action potential","synonyms":[{"name":"regulation of electrocardiogram T wave","type":"related"},{"name":"regulation of regulation of ventricular cardiac muscle repolarization","type":"related"},{"name":"regulation of ventricular repolarization","type":"related"}],"termid":"GO:1905024"}


id: PBO:0066265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBMX pseudogene 5","termid":"PBO:0066265"}


id: GO:0070240
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of activated T cell autonomous cell death.","definition_xrefs":["GOC:mtg_apoptosis","GOC:add","ISBN:0781765196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of T cell apoptotic process","termid":"GO:0070233"},{"relation_name":"is_a","term_name":"regulation of activated T cell autonomous cell death","termid":"GO:0070239"},{"relation_name":"negatively_regulates","term_name":"activated T cell autonomous cell death","termid":"GO:0070238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of activated T cell autonomous cell death","synonyms":[{"name":"down regulation of activated T cell autonomous cell death","type":"exact"},{"name":"down-regulation of activated T cell autonomous cell death","type":"exact"},{"name":"downregulation of activated T cell autonomous cell death","type":"exact"},{"name":"inhibition of activated T cell autonomous cell death","type":"narrow"},{"name":"negative regulation of ACAD","type":"broad"},{"name":"negative regulation of activated T cell apoptosis","type":"broad"},{"name":"negative regulation of activated T lymphocyte autonomous cell death","type":"exact"},{"name":"negative regulation of activated T-cell autonomous cell death","type":"exact"},{"name":"negative regulation of activated T-lymphocyte autonomous cell death","type":"exact"},{"name":"negative regulation of activated cell autonomous cell death","type":"broad"}],"termid":"GO:0070240"}


id: GO:0000311
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The larger of the two subunits of a plastid ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site).","definition_xrefs":["GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organellar large ribosomal subunit","termid":"GO:0000315"},{"relation_name":"part_of","term_name":"plastid ribosome","termid":"GO:0009547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"plastid large ribosomal subunit","termid":"GO:0000311"}


id: GO:1902205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of interleukin-2-mediated signaling pathway.","definition_xrefs":["GOC:TermGenie","PMID:11909529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine-mediated signaling pathway","termid":"GO:0001959"},{"relation_name":"regulates","term_name":"interleukin-2-mediated signaling pathway","termid":"GO:0038110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-2-mediated signaling pathway","synonyms":[{"name":"regulation of IL-2-mediated signaling pathway","type":"exact"},{"name":"regulation of interleukin-2-mediated signalling pathway","type":"exact"}],"termid":"GO:1902205"}


id: PBO:0068359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNF139 divergent transcript","termid":"PBO:0068359"}


id: GO:0042372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phylloquinone, vitamin K1, a quinone-derived compound synthesized by green plants.","definition_xrefs":["PMID:27337968","GOC:jl","PMID:23821151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin K biosynthetic process","termid":"GO:0042371"},{"relation_name":"is_a","term_name":"phylloquinone metabolic process","termid":"GO:0042374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006766"],"is_obsolete":false,"name":"phylloquinone biosynthetic process","secondary_identifiers":["MetaCyc:PWY-5027"],"synonyms":[{"name":"phylloquinone anabolism","type":"exact"},{"name":"phylloquinone biosynthesis","type":"exact"},{"name":"phylloquinone formation","type":"exact"},{"name":"phylloquinone synthesis","type":"exact"},{"name":"phytomenadione biosynthesis","type":"exact"},{"name":"phytomenadione biosynthetic process","type":"exact"},{"name":"phytonadione biosynthesis","type":"exact"},{"name":"phytonadione biosynthetic process","type":"exact"},{"name":"phytylmenaquinone biosynthesis","type":"exact"},{"name":"phytylmenaquinone biosynthetic process","type":"exact"},{"name":"vitamin K1 biosynthesis","type":"exact"},{"name":"vitamin K1 biosynthetic process","type":"exact"}],"termid":"GO:0042372"}


id: PBO:0092024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Glutamine (uug), mitochondrial","termid":"PBO:0092024"}


id: GO:0033209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by tumor necrosis factor binding to its receptor on the surface of a cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to tumor necrosis factor","termid":"GO:0071356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"tumor necrosis factor-mediated signaling pathway","synonyms":[{"name":"TNF-alpha-mediated signaling pathway","type":"narrow"},{"name":"adipocytokine signaling pathway","type":"related"},{"name":"tumor necrosis factor alpha-mediated signaling pathway","type":"narrow"},{"name":"tumor necrosis factor-mediated signalling pathway","type":"exact"}],"termid":"GO:0033209"}


id: PR:O60162
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sac11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60162"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C19F5.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19F5.03","synonyms":[{"name":"Spom972h-sac11","type":"exact"}],"termid":"PR:O60162"}


id: GO:1990224
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-nicotinamide D-ribonucleotide (NMN-) + H2O = beta-nicotinamide D-riboside (nicotinamide ribose, NmR) + phosphate.","definition_xrefs":["GOC:rb","PMID:21349851","RHEA:30815"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5'-nucleotidase activity","termid":"GO:0008253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"NMN phosphatase activity","synonyms":[{"name":"beta-nicotinamide D-ribonucleotide phosphatase activity","type":"exact"},{"name":"nicotinamide mononucleotide phosphatase activity","type":"exact"}],"termid":"GO:1990224"}


id: PBO:0080177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"voltage dependent anion channel 1 pseudogene 12","termid":"PBO:0080177"}


id: GO:0005952
data:
  {"annotated_genes":["SJAG_01245","SJAG_04312"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96523,97933],"is_not":false,"summary":null,"term":"GO:0005952"}]},"cv_name":"cellular_component","definition":"An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer.","definition_xrefs":["PMID:18178622"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"serine/threonine protein kinase complex","termid":"GO:1902554"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01245":null,"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cAMP-dependent protein kinase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"3',5' cAMP-dependent protein kinase complex","type":"exact"},{"name":"3',5'-cAMP-dependent protein kinase complex","type":"exact"},{"name":"PKA","type":"related"},{"name":"adenosine 3',5'-cyclophosphate-dependent protein kinase complex","type":"exact"},{"name":"cyclic AMP-dependent protein kinase complex","type":"exact"}],"termid":"GO:0005952","terms_by_termid":{"GO:0005952":null}}


id: PBO:0049746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HMG-box transcription factor 1","termid":"PBO:0049746"}


id: GO:0140482
data:
  {"annotated_genes":["SJAG_00792"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90111],"is_not":false,"summary":null,"term":"GO:0140482"}]},"cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of iron.","definition_xrefs":["PMID:11956219","PMID:25806539"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion sensor activity","termid":"GO:0140784"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140299"}],"interesting_parent_ids":["GO:0003674","GO:0140299","GO:0098772"],"is_obsolete":false,"name":"iron sensor activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140482","terms_by_termid":{"GO:0140482":null}}


id: PBO:0075884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST6 beta-galactoside alpha-2,6-sialyltransferase 2","termid":"PBO:0075884"}


id: GO:0002724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of T cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell mediated immunity","termid":"GO:0002709"},{"relation_name":"is_a","term_name":"regulation of cytokine production involved in immune response","termid":"GO:0002718"},{"relation_name":"regulates","term_name":"T cell cytokine production","termid":"GO:0002369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of T cell cytokine production","synonyms":[{"name":"regulation of T lymphocyte cytokine production","type":"exact"},{"name":"regulation of T-cell cytokine production","type":"exact"},{"name":"regulation of T-lymphocyte cytokine production","type":"exact"}],"termid":"GO:0002724"}


id: PBO:0005271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Oca2","termid":"PBO:0005271"}


id: GO:0070994
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a stimulus indicating oxidative stress is received and converted into a molecular signal.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxidative stress","termid":"GO:0006979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of oxidative stress","termid":"GO:0070994"}


id: PR:Q9Y8G3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear RNA export factor 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA export factor mex67 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1921.03c","secondary_identifiers":["UniProtKB:Q9Y8G3"],"synonyms":[{"name":"SPBC1921.03c","type":"related"},{"name":"Spom972h-NXF1","type":"exact"}],"termid":"PR:Q9Y8G3"}


id: PBO:0041100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BSCL2 lipid droplet biogenesis associated, seipin","termid":"PBO:0041100"}


id: PBO:0066635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RIMS binding protein 3","termid":"PBO:0066635"}


id: GO:1900965
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of methanophenazine metabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metabolic process","termid":"GO:0019222"},{"relation_name":"regulates","term_name":"methanophenazine metabolic process","termid":"GO:1900629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of methanophenazine metabolic process","synonyms":[{"name":"regulation of methanophenazine metabolism","type":"exact"}],"termid":"GO:1900965"}


id: GO:1990037
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The center portion of a Lewy body. In Parkinson's disease, it contains a matted meshwork of filaments.","definition_xrefs":["NIF_Subcellular:sao6587439252"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"Lewy body","termid":"GO:0097413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"Lewy body core","termid":"GO:1990037"}


id: GO:0033227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of dsRNA, double-stranded ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA transport","termid":"GO:0050658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"dsRNA transport","termid":"GO:0033227"}


id: PBO:0016087
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by tomato RAN2A","termid":"PBO:0016087"}


id: PBO:0079255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 27","termid":"PBO:0079255"}


id: PBO:0058875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 10226","termid":"PBO:0058875"}


id: GO:0033494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ferulate, (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ferulate metabolic process","synonyms":[{"name":"ferulate metabolism","type":"exact"}],"termid":"GO:0033494"}


id: PBO:0045889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 gamma pseudogene 1","termid":"PBO:0045889"}


id: PBO:0031322
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_menadione","termid":"PBO:0031322"}


id: GO:1905316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process by which a superior endocardial cushion is generated and organized.","definition_xrefs":["GOC:BHF","GOC:rl","PMID:17050629","GO_REF:0000083","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocardial cushion morphogenesis","termid":"GO:0003203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"superior endocardial cushion morphogenesis","synonyms":[{"name":"dorsal endocardial cushion morphogenesis","type":"exact"}],"termid":"GO:1905316"}


id: FYPO:0000962
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing hydrogen peroxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0002057","FYPO:0000003","FYPO:0000257","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on hydrogen peroxide","synonyms":[{"name":"normal cell population growth in presence of hydrogen peroxide","type":"exact"},{"name":"normal cell population growth on H2O2","type":"exact"},{"name":"normal cell population growth on hydrogen peroxide","type":"exact"},{"name":"normal cellular response to hydrogen peroxide","type":"related"},{"name":"normal vegetative cell population growth on hydrogen peroxide","type":"exact"}],"termid":"FYPO:0000962"}


id: SO:0001004
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"When a sequence does not contain an equal distribution of all four possible nucleotide bases or does not contain all nucleotide bases.","direct_ancestors":[{"relation_name":"is_a","term_name":"status","termid":"SO:0000905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"low_complexity","synonyms":[{"name":"low complexity","type":"exact"}],"termid":"SO:0001004"}


id: GO:1902425
data:
  {"annotated_genes":["SJAG_04280","SJAG_00082","SJAG_03126","SJAG_01837","SJAG_03048","SJAG_04140","SJAG_05290","SJAG_01805"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101299,108117,112186],"is_not":false,"summary":null,"term":"GO:1902425"},{"annotations":[86033,98484,112866,89848,107352],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation.","definition_xrefs":["GOC:TermGenie","PMID:22065639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of attachment of spindle microtubules to kinetochore","termid":"GO:0051987"},{"relation_name":"is_a","term_name":"regulation of attachment of mitotic spindle microtubules to kinetochore","termid":"GO:1902423"},{"relation_name":"positively_regulates","term_name":"attachment of mitotic spindle microtubules to kinetochore","termid":"GO:0051315"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_04140":null,"SJAG_04280":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0000070"}],"interesting_parent_ids":["GO:0008150","GO:0000070","GO:0007049"],"is_obsolete":false,"name":"positive regulation of attachment of mitotic spindle microtubules to kinetochore","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of attachment of spindle microtubules to kinetochore during mitosis","type":"related"},{"name":"activation of attachment of spindle microtubules to kinetochore involved in mitosis","type":"narrow"},{"name":"activation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation","type":"narrow"},{"name":"activation of attachment of spindle microtubules to mitotic chromosome","type":"narrow"},{"name":"activation of mitotic bipolar attachment","type":"related"},{"name":"positive regulation of attachment of spindle microtubules to kinetochore during mitosis","type":"related"},{"name":"positive regulation of attachment of spindle microtubules to kinetochore involved in mitosis","type":"exact"},{"name":"positive regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation","type":"exact"},{"name":"positive regulation of attachment of spindle microtubules to mitotic chromosome","type":"exact"},{"name":"positive regulation of mitotic bipolar attachment","type":"related"},{"name":"up regulation of attachment of spindle microtubules to kinetochore during mitosis","type":"related"},{"name":"up regulation of attachment of spindle microtubules to kinetochore involved in mitosis","type":"exact"},{"name":"up regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation","type":"exact"},{"name":"up regulation of attachment of spindle microtubules to mitotic chromosome","type":"exact"},{"name":"up regulation of mitotic bipolar attachment","type":"related"},{"name":"up-regulation of attachment of spindle microtubules to kinetochore during mitosis","type":"related"},{"name":"up-regulation of attachment of spindle microtubules to kinetochore involved in mitosis","type":"exact"},{"name":"up-regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation","type":"exact"},{"name":"up-regulation of attachment of spindle microtubules to mitotic chromosome","type":"exact"},{"name":"up-regulation of mitotic bipolar attachment","type":"related"},{"name":"upregulation of attachment of spindle microtubules to kinetochore during mitosis","type":"related"},{"name":"upregulation of attachment of spindle microtubules to kinetochore involved in mitosis","type":"exact"},{"name":"upregulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation","type":"exact"},{"name":"upregulation of attachment of spindle microtubules to mitotic chromosome","type":"exact"},{"name":"upregulation of mitotic bipolar attachment","type":"related"}],"termid":"GO:1902425","terms_by_termid":{"GO:0140429":null,"GO:1902425":null}}


id: PATO:0002457
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf.","definition_xrefs":["PATOC:JL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leaf-like","termid":"PATO:0002457"}


id: PBO:0073248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 2","termid":"PBO:0073248"}


id: PBO:0060343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin IXA","termid":"PBO:0060343"}


id: PBO:0113144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein (GAP) subunit of the Iml1p/SEACIT complex; SEACIT (Iml1p-Npr2p-Npr3p) is required for non-nitrogen-starvation (NNS)-induced autophagy, and is a subcomplex of the SEA, a coatomer-related complex that associates with the vacuole; Iml1p functions as a GAP for the Rag family GTPase Gtr1p (EGOC subunit) in SEACIT, resulting in the inhibition of TORC1 signaling in response to amino acid deprivation; role in the oxidative stress response","termid":"PBO:0113144"}


id: GO:0033060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The deposition or aggregation of coloring matter in an ocellus, a minute simple eye found in many invertebrates.","definition_xrefs":["GOC:mtg_MIT_16mar07"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigmentation","termid":"GO:0043473"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ocellus pigmentation","termid":"GO:0033060"}


id: PBO:0043734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6C pseudogene 13","termid":"PBO:0043734"}


id: MOD:02036
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation, Hex(9)HexNAc(2)","definition_xrefs":["Unimod:1531","PubMed:33135055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00693"}],"interesting_parent_ids":["MOD:00693"],"is_obsolete":false,"name":"Hex9HexNAc2 N4-glycosylated asparagine","synonyms":[{"name":"M9/Man9","type":"related"}],"termid":"MOD:02036"}


id: GO:0072044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a collecting duct over time, from its formation to the mature structure. The collecting duct responds to vasopressin and aldosterone to regulate water, electrolyte and acid-base balance. It is the final common path through which urine flows before entering the ureter and then emptying into the bladder.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"part_of","term_name":"kidney development","termid":"GO:0001822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"collecting duct development","termid":"GO:0072044"}


id: FYPO:0001872
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which adhesion of a cell to a substrate or another cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal cell adhesion","synonyms":[{"name":"adhesion defects","type":"exact"}],"termid":"FYPO:0001872"}


id: SO:0001647
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosome_entry_site","termid":"SO:0000139"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kozak_sequence","secondary_identifiers":["http://en.wikipedia.org/wiki/Kozak_consensus_sequence"],"synonyms":[{"name":"kozak consensus","type":"exact"},{"name":"kozak consensus sequence","type":"exact"},{"name":"kozak sequence","type":"exact"}],"termid":"SO:0001647"}


id: GO:0042578
data:
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id: MOD:01489
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an N'-hydrogen atom of a histidine residue with the Applied Biosystems iTRAQ4plex-114 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"iTRAQ4plex-114 reporter+balance reagent acylated residue","termid":"MOD:01485"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent N-acylated residue","termid":"MOD:01709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ4plex-114 reporter+balance reagent N'-acylated histidine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"iTRAQ4plex114","type":"related"}],"termid":"MOD:01489"}


id: PBO:0049744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemoglobin subunit gamma 2","termid":"PBO:0049744"}


id: PBO:0043788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic polyadenylation element binding protein 1","termid":"PBO:0043788"}


id: PATO:0001405
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus.","definition_xrefs":["Biology-online:Biology-online"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleate quality","termid":"PATO:0001404"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anucleate","termid":"PATO:0001405"}


id: GO:0004586
data:
  {"annotated_genes":["SJAG_00043"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84927],"is_not":false,"summary":null,"term":"GO:0004586"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-ornithine + H+ = CO2 + putrescine.","definition_xrefs":["RHEA:22964","EC:4.1.1.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00043":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"ornithine decarboxylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R00670","MetaCyc:ORNDECARBOX-RXN","Reactome:R-HSA-70692"],"synonyms":[{"name":"L-ornithine carboxy-lyase (putrescine-forming)","type":"related"},{"name":"L-ornithine carboxy-lyase activity","type":"narrow"},{"name":"SpeC","type":"related"}],"termid":"GO:0004586","terms_by_termid":{"GO:0004586":null}}


id: GO:0008884
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N1-(gamma-L-glutamyl-L-cysteinyl-glycyl)-spermidine + H2O = gamma-L-glutamyl-L-cysteinyl-glycine + spermidine.","definition_xrefs":["EC:3.5.1.78"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"glutathionylspermidine amidase activity","secondary_identifiers":["MetaCyc:GSPAMID-RXN","RHEA:17173"],"synonyms":[{"name":"GSP amidase activity","type":"related"},{"name":"gamma-L-glutamyl-L-cysteinyl-glycine:spermidine amidase activity","type":"related"},{"name":"glutathionylspermidine amidohydrolase (spermidine-forming) activity","type":"related"}],"termid":"GO:0008884"}


id: PBO:0063206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCBP2 pseudogene 2","termid":"PBO:0063206"}


id: PBO:0080410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS37D subunit of ESCRT-I","termid":"PBO:0080410"}


id: PBO:0027544
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_latrunculin_A","termid":"PBO:0027544"}


id: GO:0044271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular nitrogen compound biosynthetic process (obsolete GO:0044271)","termid":"GO:0044271"}


id: PR:G2TRR2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC32F12.17 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRR2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transmembrane protein C32F12.17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32F12.17","synonyms":[{"name":"Spom972h-SPBC32F12.17","type":"exact"}],"termid":"PR:G2TRR2"}


id: MOD:01523
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Applied Biosystems iTRAQ4plex 115 reagent derivatized residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"iTRAQ4plex-115 reporter+balance reagent acylated residue","termid":"MOD:01492"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter fragment","termid":"MOD:01521"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ4plex-115 reporter fragment","synonyms":[{"name":"4-methyl-1-methylidenepiperazin-1-ium","type":"exact"}],"termid":"MOD:01523"}


id: GO:0003320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The inward folding of myocardial tissue derived from the right half of the heart rudiment that will form the future ventral part of the heart tube.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelial fold involved in embryonic heart tube formation","termid":"GO:0003152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"heart rudiment involution","termid":"GO:0003320"}


id: GO:0060828
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.","definition_xrefs":["GOC:sdb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Wnt signaling pathway","termid":"GO:0030111"},{"relation_name":"regulates","term_name":"canonical Wnt signaling pathway","termid":"GO:0060070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of canonical Wnt signaling pathway","secondary_identifiers":["GO:0035411","GO:0035412"],"synonyms":[{"name":"catenin import into nucleus","type":"narrow"},{"name":"regulation of Wnt receptor signaling pathway through beta-catenin","type":"exact"},{"name":"regulation of canonical Wnt receptor signaling pathway","type":"exact"},{"name":"regulation of canonical Wnt receptor signalling pathway","type":"exact"},{"name":"regulation of canonical Wnt-activated signaling pathway","type":"exact"},{"name":"regulation of catenin import into nucleus","type":"narrow"},{"name":"regulation of catenin protein nuclear translocation","type":"narrow"}],"termid":"GO:0060828"}


id: PBO:0031684
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_peroxisome_degradation","termid":"PBO:0031684"}


id: FYPO:0007699
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in a homothallic population undergoes conjugation with non-sister cells.","definition_xrefs":["PMID:30279276","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased conjugation frequency","termid":"FYPO:0000303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased frequency of conjugation with non-sister cells","synonyms":[{"name":"decreased conjugation frequency with non-sister cells","type":"exact"},{"name":"decreased frequency of mating with non-sister cells","type":"exact"},{"name":"decreased mating efficiency with non-sister cells","type":"related"},{"name":"decreased mating frequency with non-sister cells","type":"exact"}],"termid":"FYPO:0007699"}


id: GO:0006528
data:
  {"annotated_genes":["SJAG_04549","SJAG_00714","SJAG_00881","SJAG_02276","SJAG_02832"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90997],"is_not":false,"summary":null,"term":"GO:0006528"},{"annotations":[98262,106940],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006529"},{"annotations":[107970],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019266"},{"annotations":[102112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006530"},{"annotations":[98263],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070981"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving asparagine, 2-amino-3-carbamoylpropanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aspartate family amino acid metabolic process","termid":"GO:0009066"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00714":null,"SJAG_00881":null,"SJAG_02276":null,"SJAG_02832":null,"SJAG_04549":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"asparagine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ASPARAGINESYN-PWY"],"synonyms":[{"name":"asparagine metabolism","type":"exact"}],"termid":"GO:0006528","terms_by_termid":{"GO:0006528":null,"GO:0006529":null,"GO:0006530":null,"GO:0019266":null,"GO:0070981":null}}


id: GO:0052608
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: echinenone + a reduced electron acceptor + oxygen = 3-hydroxyechinenone + an oxidized electron acceptor + H2O.","definition_xrefs":["MetaCyc:RXN-8214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"echinenone 3-hydroxylase activity","synonyms":[{"name":"beta-carotene hydroxylase activity","type":"broad"},{"name":"beta-ring carotenoid 3-hydroxylase activity","type":"broad"},{"name":"carotene beta-ring hydroxylase activity","type":"broad"}],"termid":"GO:0052608"}


id: PBO:0088918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone lysine acetyltransferase Rtt109","termid":"PBO:0088918"}


id: PBO:0028119
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_lateral_cortical_node,_with_protein_distributed_in_plasma_membrane_or_cortex","termid":"PBO:0028119"}


id: PBO:0034666
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_bundle","termid":"PBO:0034666"}


id: PBO:0076050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stathmin 4","termid":"PBO:0076050"}


id: PBO:0080204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vezatin, adherens junctions transmembrane protein","termid":"PBO:0080204"}


id: GO:0050505
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: hydroquinone + UDP-D-glucose = H+ + hydroquinone O-beta-D-glucopyranoside + UDP.","definition_xrefs":["RHEA:12560","EC:2.4.1.218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"hydroquinone glucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.218-RXN","KEGG_REACTION:R05769"],"synonyms":[{"name":"UDP-glucose:hydroquinone-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:hydroquinone-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"arbutin synthase activity","type":"related"},{"name":"hydroquinone:O-glucosyltransferase activity","type":"related"}],"termid":"GO:0050505"}


id: PBO:0080540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain binding protein 1","termid":"PBO:0080540"}


id: GO:0060138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A reproductive process occurring in the embryo that results in birth.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"parturition","termid":"GO:0007567"},{"relation_name":"part_of","term_name":"embryo development ending in birth or egg hatching","termid":"GO:0009792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fetal process involved in parturition","termid":"GO:0060138"}


id: PBO:0073814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 6 member 16","termid":"PBO:0073814"}


id: GO:0009424
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the bacterial-type flagellum that connects the filament to the basal body.","definition_xrefs":["PMID:12624192","GOC:cilia","GOC:mtg_sensu","PMID:10572114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"bacterial-type flagellum","termid":"GO:0009288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"bacterial-type flagellum hook","synonyms":[{"name":"flagellar hook","type":"exact"},{"name":"flagellin-based flagellum hook","type":"exact"}],"termid":"GO:0009424"}


id: GO:0089709
data:
  {"annotated_genes":["SJAG_03400","SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93432],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089708"},{"annotations":[99957],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090513"}]},"cv_name":"biological_process","definition":"The directed movement of L-histidine across a membrane.","definition_xrefs":["PMID:21307582"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"aromatic amino acid transport","termid":"GO:0015801"},{"relation_name":"is_a","term_name":"azole transmembrane transport","termid":"GO:0045117"},{"relation_name":"is_a","term_name":"L-alpha-amino acid transmembrane transport","termid":"GO:1902475"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03256":null,"SJAG_03400":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"L-histidine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0089709","terms_by_termid":{"GO:0089708":null,"GO:0090513":null}}


id: GO:0031608
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The subunits forming the inner ring of the core complex of a proteasome located in the endoplasmic reticulum of a cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ER proteasome core complex, beta-subunit complex (obsolete GO:0031608)","termid":"GO:0031608"}


id: GO:0102641
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-propane-1,2-diol + NADP = (R)-lactaldehyde + NADPH + H+.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"(R)-lactaldehyde dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-15743"],"termid":"GO:0102641"}


id: PR:P87014
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein-S-isoprenylcysteine O-methyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12714:SF0","PRO:DNx","OMA:SCHPO00496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein-S-isoprenylcysteine O-methyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC10F6.12c","secondary_identifiers":["UniProtKB:P87014"],"synonyms":[{"name":"PPMT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ICMT","type":"exact"},{"name":"isoprenylcysteine carboxylmethyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"pcCMT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"prenylated protein carboxyl methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"prenylcysteine carboxyl methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87014"}


id: GO:0019801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cyclization of asparagine to yield an L-aspartimide (otherwise known as alpha-aminosuccinimide) residue at the C-terminus of an excised intein during protein splicing.","definition_xrefs":["RESID:AA0302"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asparagine metabolic process","termid":"GO:0006528"},{"relation_name":"part_of","term_name":"intein-mediated protein splicing","termid":"GO:0016539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0051604","GO:0044281","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"cyclization of asparagine involved in intein-mediated protein splicing","synonyms":[{"name":"cyclization of asparagine, during protein splicing","type":"related"}],"termid":"GO:0019801"}


id: PBO:0050805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"huntingtin","termid":"PBO:0050805"}


id: FYPO:0003578
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which vacuolar transport is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport","termid":"FYPO:0001720"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal vacuolar transport","synonyms":[{"name":"vacuolar transport: abnormal","type":"related"}],"termid":"FYPO:0003578"}


id: PBO:0088659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endocytic trafficking protein","termid":"PBO:0088659"}


id: PBO:0090395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, G-patch type, splicing factor 45 ortholog","termid":"PBO:0090395"}


id: GO:1905725
data:
  {"annotated_genes":["SJAG_02695"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93051],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904518"}]},"cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location at a microtubule end.","definition_xrefs":["GO_REF:0000087","GOC:TermGenie","PMID:12034771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to microtubule","termid":"GO:0035372"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02695":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to microtubule end","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation to microtubule end","type":"exact"}],"termid":"GO:1905725","terms_by_termid":{"GO:1904518":null}}


id: PBO:0071239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 80","termid":"PBO:0071239"}


id: GO:0052596
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phenylethylamine + O2 + H2O = phenylacetaldehyde + NH3 + hydrogen peroxide + H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete phenethylamine:oxygen oxidoreductase (deaminating) activity (obsolete GO:0052596)","termid":"GO:0052596"}


id: GO:0034602
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + CoA + NAD+ = succinyl-CoA + CO2 + NADH.","definition_xrefs":["GOC:mah","RHEA:27786"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxoglutarate dehydrogenase [NAD(P)+] activity","termid":"GO:0034601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"oxoglutarate dehydrogenase (NAD+) activity","secondary_identifiers":["MetaCyc:2OXOGLUTARATEDEH-RXN","Reactome:R-HSA-71401","EC:1.2.1.105","KEGG_REACTION:R08549","Reactome:R-HSA-71037"],"termid":"GO:0034602"}


id: GO:0035372
data:
  {"annotated_genes":["SJAG_02695","SJAG_02045"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87412],"is_not":false,"summary":null,"term":"GO:0035372"},{"annotations":[93051],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904518"}]},"cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained at, a microtubule.","definition_xrefs":["GOC:bf","GOC:lb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to microtubule cytoskeleton","termid":"GO:0072698"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02045":null,"SJAG_02695":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to microtubule","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation to microtubule","type":"exact"}],"termid":"GO:0035372","terms_by_termid":{"GO:0035372":null,"GO:1904518":null}}


id: GO:0097647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by amylin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process.","definition_xrefs":["GOC:bhm","PMID:12037140","PMID:10871296","PMID:18687416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcitonin family receptor signaling pathway","termid":"GO:0097646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"amylin receptor signaling pathway","synonyms":[{"name":"amilyn receptor signalling pathway","type":"exact"}],"termid":"GO:0097647"}


id: PBO:0089578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A/U) polymerase Cid16","termid":"PBO:0089578"}


id: SO:0000906
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Attribute to describe a feature that is independently known - not predicted.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"status","termid":"SO:0000905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"independently_known","synonyms":[{"name":"independently known","type":"exact"}],"termid":"SO:0000906"}


id: GO:0014916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that modulates the force with which blood travels through the lungs. The process is controlled by a balance of processes that increase pressure and decrease pressure.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of blood pressure","termid":"GO:0008217"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lung blood pressure","synonyms":[{"name":"regulation of pulmonary blood pressure","type":"exact"}],"termid":"GO:0014916"}


id: PBO:0067343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 440, pseudogene","termid":"PBO:0067343"}


id: GO:1901255
data:
  {"annotated_genes":["SJAG_03734","SJAG_02556","SJAG_02031","SJAG_02334","SJAG_02200"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89028,89701,106175,107575,114948],"is_not":false,"summary":null,"term":"GO:1901255"}]},"cv_name":"biological_process","definition":"Any nucleotide-excision repair that is involved in interstrand cross-link repair.","definition_xrefs":["GOC:TermGenie","PMID:22064477"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair","termid":"GO:0006289"},{"relation_name":"part_of","term_name":"interstrand cross-link repair","termid":"GO:0036297"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02031":null,"SJAG_02200":null,"SJAG_02334":null,"SJAG_02556":null,"SJAG_03734":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0006281","GO:0008150"],"is_obsolete":false,"name":"nucleotide-excision repair involved in interstrand cross-link repair","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NER involved in ICL repair","type":"exact"},{"name":"NER involved in interstrand cross-link repair","type":"exact"},{"name":"nucleotide-excision repair involved in ICL repair","type":"exact"}],"termid":"GO:1901255","terms_by_termid":{"GO:1901255":null}}


id: GO:1990695
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the Golgi trans cisterna membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["PMID:24119662","GOC:bhm","PMID:16038056"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of Golgi trans cisterna membrane (obsolete GO:1990695)","synonyms":[{"name":"intrinsic component of trans-Golgi cisterna membrane","type":"exact"}],"termid":"GO:1990695"}


id: GO:0042708
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of elastin.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete elastase activity (obsolete GO:0042708)","synonyms":[{"name":"elastase activity","type":"exact"}],"termid":"GO:0042708"}


id: PBO:0055985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat transmembrane neuronal 3","termid":"PBO:0055985"}


id: PBO:0028075
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_single_or_double_cell_division,_arrest_with_single_nucleus","termid":"PBO:0028075"}


id: PBO:0057123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 206","termid":"PBO:0057123"}


id: FYPO:0002430
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that undergoes two or more rounds of cell division, and then dies.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination","termid":"FYPO:0000316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions","synonyms":[{"name":"inviable following spore germination, multiple cell divisions","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions","type":"exact"}],"termid":"FYPO:0002430"}


id: PBO:0035835
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H3-K4_dimethylation_during_vegetative_growth","termid":"PBO:0035835"}


id: PBO:0003364
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial dysautonomia","termid":"PBO:0003364"}


id: PATO:0001903
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A directional quality inhering in a bearer by virtue of the bearer's having two directions.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"direction","termid":"PATO:0000039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bi-directional","termid":"PATO:0001903"}


id: PBO:0067350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 447, pseudogene","termid":"PBO:0067350"}


id: GO:2000985
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ATP citrate synthase activity.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transferase activity","termid":"GO:0051347"},{"relation_name":"is_a","term_name":"regulation of ATP citrate synthase activity","termid":"GO:2000983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of ATP citrate synthase activity","synonyms":[{"name":"positive regulation of ATP citrate (pro-S)-lyase activity","type":"exact"},{"name":"positive regulation of ATP-citrate (pro-S)-lyase activity","type":"exact"},{"name":"positive regulation of ATP-citrate (pro-S-)-lyase activity","type":"exact"},{"name":"positive regulation of ATP-citric lyase activity","type":"exact"},{"name":"positive regulation of ATP:citrate oxaloacetate-lyase ((pro-S)-CH(2)COO(-)->acetyl-CoA) (ATP- dephosphorylating) activity","type":"exact"},{"name":"positive regulation of ATP:citrate oxaloacetate-lyase [(pro-S)-CH2COO-rightacetyl-CoA] (ATP-dephosphorylating)","type":"related"},{"name":"positive regulation of acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]","type":"related"},{"name":"positive regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP- phosphorylating) activity","type":"exact"},{"name":"positive regulation of acetyl-CoA:oxaloacetate acetyltransferase (isomerizing; ADP-phosphorylating)","type":"exact"},{"name":"positive regulation of adenosine triphosphate citrate lyase activity","type":"exact"},{"name":"positive regulation of citrate cleavage enzyme activity","type":"related"},{"name":"positive regulation of citrate-ATP lyase activity","type":"exact"},{"name":"positive regulation of citric cleavage enzyme activity","type":"related"}],"termid":"GO:2000985"}


id: GO:0006067
data:
  {"annotated_genes":["SJAG_03370","SJAG_00240","SJAG_03786","SJAG_05006","SJAG_01414","SJAG_03743","SJAG_03822"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96956],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006068"},{"annotations":[110778,110779,84540,94807,94808],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019655"},{"annotations":[92642],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:2001172"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving ethanol, CH3-CH2-OH, a colorless, water-miscible, flammable liquid produced by alcoholic fermentation.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00240":null,"SJAG_01414":null,"SJAG_03370":null,"SJAG_03743":null,"SJAG_03786":null,"SJAG_03822":null,"SJAG_05006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ethanol metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ethanol metabolism","type":"exact"}],"termid":"GO:0006067","terms_by_termid":{"GO:0006068":null,"GO:0019655":null,"GO:2001172":null}}


id: PBO:0072787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sarcoma antigen 2, pseudogene","termid":"PBO:0072787"}


id: GO:1901802
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 1,5-anhydro-D-fructose.","definition_xrefs":["GOC:yaf","PMID:15716041","GOC:TermGenie","MetaCyc:PWY-6992","UniPathway:UPA00738"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"polyol catabolic process","termid":"GO:0046174"},{"relation_name":"is_a","term_name":"monosaccharide catabolic process","termid":"GO:0046365"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"},{"relation_name":"is_a","term_name":"1,5-anhydro-D-fructose metabolic process","termid":"GO:1901801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044248","GO:0005975","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"1,5-anhydro-D-fructose catabolic process","synonyms":[{"name":"1,5-anhydro-D-fructose breakdown","type":"exact"},{"name":"1,5-anhydro-D-fructose catabolism","type":"exact"},{"name":"1,5-anhydro-D-fructose degradation","type":"exact"}],"termid":"GO:1901802"}


id: PBO:0002346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decaprenyl diphosphate synthase subunit 2 Dlp1","termid":"PBO:0002346"}


id: FYPO:0007475
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle pole body begins later than normal.","definition_xrefs":["PomBase:mah","PMID:23333317"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to mitotic spindle pole body","termid":"FYPO:0000939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"delayed onset of protein localization to mitotic spindle pole body","synonyms":[{"name":"delayed onset of protein localization to mitotic SPB","type":"exact"},{"name":"delayed onset of protein localization to mitotic spindle pole body during mitotic cell cycle","type":"related"},{"name":"delayed onset of protein localization to mitotic spindle pole body during vegetative growth","type":"exact"},{"name":"delayed protein localization to mitotic spindle pole body","type":"exact"}],"termid":"FYPO:0007475"}


id: PBO:0039421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiopoietin like 1","termid":"PBO:0039421"}


id: GO:0106210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of culmorin, a sesquiterpenoid fungal metabolite and mycotoxin produced by some ascomycete species such as Fusarium culmorum, F. graminearum, F. venenatum and Leptosphaeria oraemaris.","definition_xrefs":["PMID:19880637","GOC:ach","PMID:26673640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpenoid biosynthetic process","termid":"GO:0016106"},{"relation_name":"is_a","term_name":"diol biosynthetic process","termid":"GO:0034312"},{"relation_name":"is_a","term_name":"mycotoxin biosynthetic process","termid":"GO:0043386"},{"relation_name":"is_a","term_name":"sesquiterpene biosynthetic process","termid":"GO:0051762"},{"relation_name":"is_a","term_name":"secondary alcohol biosynthetic process","termid":"GO:1902653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"culmorin biosynthetic process","synonyms":[{"name":"culmorin anabolism","type":"exact"},{"name":"culmorin biosynthesis","type":"exact"},{"name":"culmorin formation","type":"exact"},{"name":"culmorin synthesis","type":"exact"}],"termid":"GO:0106210"}


id: PBO:0073977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 23 member 2","termid":"PBO:0073977"}


id: SO:0000382
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A group II intron that recognizes IBS1/EBS1 and IBS2/EBS2 for the 5-prime exon and IBS3/EBS3 for the 3-prime exon.","definition_xrefs":["PMID:20463000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"group_II_intron","termid":"SO:0000603"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"group_IIB_intron","synonyms":[{"name":"group IIB intron","type":"exact"}],"termid":"SO:0000382"}


id: PBO:0051867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon stimulated exonuclease gene 20 like 2","termid":"PBO:0051867"}


id: GO:0008015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The flow of blood through the body of an animal, enabling the transport of nutrients to the tissues and the removal of waste products.","definition_xrefs":["GOC:mtg_heart","ISBN:0192800825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"circulatory system process","termid":"GO:0003013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"blood circulation","secondary_identifiers":["GO:0070261"],"synonyms":[{"name":"hemolymph circulation","type":"related"}],"termid":"GO:0008015"}


id: GO:0140040
data:
  {"annotated_genes":["SJAG_04885"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106041],"is_not":false,"summary":null,"term":"GO:0140040"}]},"cv_name":"biological_process","definition":"The conversion of polycistronic RNA transcribed from a mitochondrial genome into mono- or bi-cistronic RNAs.","definition_xrefs":["PMID:20211597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polycistronic mRNA processing","termid":"GO:0031426"},{"relation_name":"is_a","term_name":"mitochondrial mRNA processing","termid":"GO:0090615"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04885":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016071","GO:0008150","GO:0010467","GO:0140053"],"is_obsolete":false,"name":"mitochondrial polycistronic RNA processing","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140040","terms_by_termid":{"GO:0140040":null}}


id: GO:1901003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fermentation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular metabolic process","termid":"GO:0031324"},{"relation_name":"is_a","term_name":"regulation of fermentation","termid":"GO:0043465"},{"relation_name":"negatively_regulates","term_name":"fermentation","termid":"GO:0006113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"negative regulation of fermentation","synonyms":[{"name":"down regulation of fermentation","type":"exact"},{"name":"down-regulation of fermentation","type":"exact"},{"name":"downregulation of fermentation","type":"exact"},{"name":"inhibition of fermentation","type":"narrow"}],"termid":"GO:1901003"}


id: GO:0042400
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid), a tetrahydropyrimidine commonly synthesized by halophilic bacteria.","definition_xrefs":["GOC:jl","PMID:11823218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectoine metabolic process","termid":"GO:0042399"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0044281"],"is_obsolete":false,"name":"ectoine catabolic process","synonyms":[{"name":"ectoine breakdown","type":"exact"},{"name":"ectoine catabolism","type":"exact"},{"name":"ectoine degradation","type":"exact"}],"termid":"GO:0042400"}


id: PBO:0040361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit k","termid":"PBO:0040361"}


id: PBO:0059765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 39","termid":"PBO:0059765"}


id: GO:0038146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of the chemokine CXCL12 to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["Wikipedia:Stromal_cell-derived_factor-1","GOC:nhn","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine-mediated signaling pathway","termid":"GO:0070098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"chemokine (C-X-C motif) ligand 12 signaling pathway","synonyms":[{"name":"CXCL12 signaling pathway","type":"exact"},{"name":"CXCL12-activated CXCR7 signaling pathway","type":"narrow"},{"name":"SDF1 signaling pathway","type":"exact"},{"name":"stromal cell-derived factor-1 signaling pathway","type":"exact"}],"termid":"GO:0038146"}


id: GO:0043906
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of misacylated Ala-tRNA(Pro).","definition_xrefs":["GOC:jl","PMID:14663147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA editing activity","termid":"GO:0002161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0016788","GO:0140101","GO:0016787","GO:0140098","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"Ala-tRNA(Pro) hydrolase activity","synonyms":[{"name":"Ala-tRNAPro hydrolase activity","type":"exact"}],"termid":"GO:0043906"}


id: GO:0050916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required to receive a sweet taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of taste","termid":"GO:0050909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory perception of sweet taste","synonyms":[{"name":"sweet taste perception","type":"exact"}],"termid":"GO:0050916"}


id: GO:0061823
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ring-like structure observed at the base of the ciliary cap of insect spermatids. This structure may anchor the axoneme to the ciliary cap membrane and/or act as a diffusion barrier, proposed to be analogous to the annulus of mammalian sperm flagellum.","definition_xrefs":["PMID:25447994","PMID:4903810"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ring centriole","termid":"GO:0061823"}


id: FYPO:0005710
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of DNA-dependent DNA replication is abnormal, resulting in one or more rounds of rereplication of the entire genome, followed by cell cycle arrest.","definition_xrefs":["PMID:7774573","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"abnormal mitotic cell cycle arrest with replicated DNA","termid":"FYPO:0000444"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle arrest with replicated DNA","termid":"FYPO:0000444"},{"relation_name":"is_a","term_name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication","termid":"FYPO:0001425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"abnormal negative regulation of DNA replication initiation resulting in complete rereplication, with mitotic cell cycle arrest","synonyms":[{"name":"abnormal negative regulation of DNA replication initiation resulting in complete re-replication, with mitotic cell cycle arrest","type":"exact"},{"name":"abnormal negative regulation of DNA replication initiation resulting in complete rereplication, with cell cycle arrest, during mitotic cell cycle","type":"related"},{"name":"abnormal negative regulation of DNA replication initiation resulting in complete rereplication, with mitotic cell cycle arrest with replicated DNA","type":"exact"},{"name":"abnormal negative regulation of DNA replication initiation resulting in complete rereplication, with mitotic cell cycle arrest, during vegetative growth","type":"exact"},{"name":"abnormal negative regulation of DNA-dependent DNA replication initiation resulting in complete rereplication, with mitotic cell cycle arrest","type":"exact"}],"termid":"FYPO:0005710"}


id: GO:0004553
data:
  {"annotated_genes":["SJAG_02590","SJAG_02131","SJAG_01029","SJAG_02949","SJAG_01883","SJAG_04363","SJAG_02192","SJAG_02718","SJAG_03646","SJAG_01888","SJAG_02435","SJAG_02649","SJAG_04851","SJAG_02076","SJAG_04327","SJAG_00485","SJAG_04864","SJAG_04789","SJAG_00310","SJAG_02478","SJAG_03280","SJAG_00667","SJAG_05272","SJAG_01858","SJAG_03824","SJAG_05001","SJAG_04238","SJAG_03295","SJAG_04859","SJAG_02711","SJAG_01171","SJAG_03444","SJAG_02446","SJAG_00620","SJAG_01017","SJAG_03032","SJAG_04301","SJAG_04850","SJAG_02799","SJAG_00096"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84728,94326,102815],"is_not":false,"summary":null,"term":"GO:0004553"},{"annotations":[107669],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004555"},{"annotations":[97690,97689],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004558"},{"annotations":[110167,100123,90883,90097,91268,113975,114521],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004556"},{"annotations":[96438],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004557"},{"annotations":[92171,83663,83662,92170],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090599"},{"annotations":[84344],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004559"},{"annotations":[112303],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004564"},{"annotations":[83489,111798,104534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008422"},{"annotations":[97604],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004568"},{"annotations":[90069,96238],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052861"},{"annotations":[83417],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106407"},{"annotations":[95876],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004573"},{"annotations":[99416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004339"},{"annotations":[107470,85128],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051118"},{"annotations":[91152,96239,90070],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042973"},{"annotations":[98045,98044,104210],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046557"},{"annotations":[84319,98047,98046,104211,91153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004338"},{"annotations":[90263,86629],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015926"},{"annotations":[98346,98357,93005,114957,98358],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008496"},{"annotations":[66033,91770],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004571"},{"annotations":[112304],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004575"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of any O-glycosyl bond.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on glycosyl bonds","termid":"GO:0016798"}],"gene_count":40,"genes_by_uniquename":{"SJAG_00096":null,"SJAG_00310":null,"SJAG_00485":null,"SJAG_00620":null,"SJAG_00667":null,"SJAG_01017":null,"SJAG_01029":null,"SJAG_01171":null,"SJAG_01858":null,"SJAG_01883":null,"SJAG_01888":null,"SJAG_02076":null,"SJAG_02131":null,"SJAG_02192":null,"SJAG_02435":null,"SJAG_02446":null,"SJAG_02478":null,"SJAG_02590":null,"SJAG_02649":null,"SJAG_02711":null,"SJAG_02718":null,"SJAG_02799":null,"SJAG_02949":null,"SJAG_03032":null,"SJAG_03280":null,"SJAG_03295":null,"SJAG_03444":null,"SJAG_03646":null,"SJAG_03824":null,"SJAG_04238":null,"SJAG_04301":null,"SJAG_04327":null,"SJAG_04363":null,"SJAG_04789":null,"SJAG_04850":null,"SJAG_04851":null,"SJAG_04859":null,"SJAG_04864":null,"SJAG_05001":null,"SJAG_05272":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016798"],"is_obsolete":false,"name":"hydrolase activity, hydrolyzing O-glycosyl compounds","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0016800","EC:3.2.1.-","Reactome:R-HSA-9661820","Reactome:R-HSA-5694563","Reactome:R-HSA-6786652"],"synonyms":[{"name":"O-glucosyl hydrolase activity","type":"exact"}],"termid":"GO:0004553","terms_by_termid":{"GO:0004338":null,"GO:0004339":null,"GO:0004553":null,"GO:0004555":null,"GO:0004556":null,"GO:0004557":null,"GO:0004558":null,"GO:0004559":null,"GO:0004564":null,"GO:0004568":null,"GO:0004571":null,"GO:0004573":null,"GO:0004575":null,"GO:0008422":null,"GO:0008496":null,"GO:0015926":null,"GO:0042973":null,"GO:0046557":null,"GO:0051118":null,"GO:0052861":null,"GO:0090599":null,"GO:0106407":null}}


id: PATO:0001923
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism.","definition_xrefs":["PATOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalised","termid":"PATO:0000628"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mislocalised laterally","termid":"PATO:0001923"}


id: GO:0047328
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-hexose + acyl phosphate = D-hexose phosphate + an acid.","definition_xrefs":["EC:2.7.1.61","MetaCyc:2.7.1.61-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016301","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"acyl-phosphate-hexose phosphotransferase activity","secondary_identifiers":["RHEA:13077"],"synonyms":[{"name":"acyl-phosphate:D-hexose phosphotransferase activity","type":"related"},{"name":"hexose phosphate:hexose phosphotransferase activity","type":"related"}],"termid":"GO:0047328"}


id: PBO:0060943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear factor, erythroid 4","termid":"PBO:0060943"}


id: PBO:0060370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myotilin","termid":"PBO:0060370"}


id: GO:0046706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of CDP, cytidine (5'-)diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside diphosphate catabolic process","termid":"GO:0009195"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide catabolic process","termid":"GO:0009222"},{"relation_name":"is_a","term_name":"CDP metabolic process","termid":"GO:0046704"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"CDP catabolic process","synonyms":[{"name":"CDP breakdown","type":"exact"},{"name":"CDP catabolism","type":"exact"},{"name":"CDP degradation","type":"exact"}],"termid":"GO:0046706"}


id: GO:2001228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to gamma radiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"response to gamma radiation","termid":"GO:0010332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to gamma radiation","synonyms":[{"name":"regulation of response to gamma ray","type":"related"},{"name":"regulation of response to gamma-ray photon","type":"related"}],"termid":"GO:2001228"}


id: PBO:0001903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome L32 lysine methyltransferase Set13","termid":"PBO:0001903"}


id: PBO:0047651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase 4 pseudogene 7","termid":"PBO:0047651"}


id: GO:0009446
data:
  {"annotated_genes":["SJAG_00043"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033387"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane; putrescine can be synthesized from arginine or ornithine and is the metabolic precursor of spermidine and spermine.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine biosynthetic process","termid":"GO:0006596"},{"relation_name":"is_a","term_name":"putrescine metabolic process","termid":"GO:0009445"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00043":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"putrescine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"putrescine anabolism","type":"exact"},{"name":"putrescine biosynthesis","type":"exact"},{"name":"putrescine formation","type":"exact"},{"name":"putrescine synthesis","type":"exact"}],"termid":"GO:0009446","terms_by_termid":{"GO:0033387":null}}


id: GO:0010888
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of lipid storage. Lipid storage is the accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid storage","termid":"GO:0010883"},{"relation_name":"is_a","term_name":"negative regulation of lipid localization","termid":"GO:1905953"},{"relation_name":"negatively_regulates","term_name":"lipid storage","termid":"GO:0019915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of lipid storage","termid":"GO:0010888"}


id: GO:0008540
data:
  {"annotated_genes":["SJAG_00712","SJAG_01489","SJAG_02992","SJAG_03638","SJAG_00766","SJAG_04088","SJAG_04477","SJAG_01544","SJAG_01131"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[92817,95030,100192,101460,103205,106388,109206,111357,113608],"is_not":false,"summary":null,"term":"GO:0008540"}]},"cv_name":"cellular_component","definition":"The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex.","definition_xrefs":["GOC:mtg_sensu","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"proteasome regulatory particle","termid":"GO:0005838"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00712":null,"SJAG_00766":null,"SJAG_01131":null,"SJAG_01489":null,"SJAG_01544":null,"SJAG_02992":null,"SJAG_03638":null,"SJAG_04088":null,"SJAG_04477":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"proteasome regulatory particle, base subcomplex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0008540","terms_by_termid":{"GO:0008540":null}}


id: PBO:0040080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase B","termid":"PBO:0040080"}


id: PBO:0000191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSU-rRNA maturation protein Tsr4 homolog 2 (predicted)","termid":"PBO:0000191"}


id: FYPO:0006184
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more messenger RNAs that are normally expressed during a cellular response to osmotic stress measured in a cell differs from normal (i.e. is higher or lower than observed in wild-type cells during vegetative growth).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of stress responsive gene mRNA during vegetative growth","termid":"FYPO:0004363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0006551","FYPO:0005447"],"is_obsolete":false,"name":"altered level of osmotic stress responsive gene mRNA during vegetative growth","synonyms":[{"name":"abnormal level of osmotic stress responsive gene mRNA during vegetative growth","type":"exact"},{"name":"altered level of cellular response to osmotic stress responsive gene mRNA","type":"exact"},{"name":"altered level of osmotic stress responsive gene RNA during vegetative growth","type":"exact"},{"name":"altered level of osmotic stress responsive gene mRNA during mitotic cell cycle","type":"related"},{"name":"altered level of osmotic stress responsive gene transcripts during vegetative growth","type":"exact"},{"name":"altered mRNA level of osmotic stress responsive genes during vegetative growth","type":"exact"},{"name":"altered osmotic stress responsive gene mRNA accumulation during vegetative growth","type":"related"}],"termid":"FYPO:0006184"}


id: GO:2001249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of ammonia assimilation cycle.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nitrogen utilization","termid":"GO:0045847"},{"relation_name":"is_a","term_name":"negative regulation of glutamate metabolic process","termid":"GO:2000212"},{"relation_name":"is_a","term_name":"regulation of ammonia assimilation cycle","termid":"GO:2001248"},{"relation_name":"negatively_regulates","term_name":"ammonia assimilation cycle","termid":"GO:0019676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"negative regulation of ammonia assimilation cycle","synonyms":[{"name":"negative regulation of glutamate metabolic process via glutamine and ammonia","type":"exact"},{"name":"negative regulation of glutamate metabolism via glutamine and ammonia","type":"exact"}],"termid":"GO:2001249"}


id: PBO:0084523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the ChAPs family (Chs5p-Arf1p-binding proteins); members include Bch1p, Bch2p, Bud7p, and Chs6p; ChAPs family proteins form the exomer complex with Chs5p to mediate export of specific cargo proteins from the Golgi to the plasma membrane; interacts selectively with the activated, GTP-bound form of Arf1p; may interact with ribosomes; protein abundance increases and forms cytoplasmic foci in response to DNA replication stress","termid":"PBO:0084523"}


id: FYECO:0000439
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which glycerophosphocholine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ glycerophosphocholine","secondary_identifiers":["PMID:38133430"],"termid":"FYECO:0000439"}


id: PBO:0051638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMP3 pseudogene 1","termid":"PBO:0051638"}


id: FYPO:0003165
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype in which a cell undergoes mitotic catastrophe (i.e. enters mitosis prematurely and with defective chromosome segregation), and then septates to give rise to a cut phenotype. In a cut phenotype, a cell undergoes septation despite abnormal mitosis, such that the septum physically divides the nucleus into two parts, and produces inviable daughter cells.","definition_xrefs":["PomBase:mah","PomBase:jh","PomBase:vw"],"direct_ancestors":[{"relation_name":"has_part","term_name":"mistimed mitosis","termid":"FYPO:0001204"},{"relation_name":"has_part","term_name":"inviable vegetative cell","termid":"FYPO:0001489"},{"relation_name":"is_a","term_name":"cut","termid":"FYPO:0000229"},{"relation_name":"is_a","term_name":"mistimed mitosis","termid":"FYPO:0001204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000032","FYPO:0000631","FYPO:0000641","FYPO:0000337","FYPO:0000002","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"cut with abnormal chromosome segregation","secondary_identifiers":["FYPO:0001048"],"synonyms":[{"name":"cut with abnormal chromosome segregation during mitotic cell cycle","type":"related"},{"name":"cut with abnormal chromosome segregation during vegetative growth","type":"exact"},{"name":"cut with mitotic catastrophe","type":"related"},{"name":"mitotic catastrophe with cut","type":"related"},{"name":"septation following abnormal chromosome segregation, with septum dividing nucleus","type":"exact"}],"termid":"FYPO:0003165"}


id: PBO:0071927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 4","termid":"PBO:0071927"}


id: GO:0030931
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of four different subunits that possesses ADPG pyrophosphorylase activity. An example of this process is found in Mus musculus.","definition_xrefs":["GOC:mah","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ADPG pyrophosphorylase complex","termid":"GO:0030929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"heterotetrameric ADPG pyrophosphorylase complex","termid":"GO:0030931"}


id: SO:0001997
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A heterochromatic region of the chromosome, adjacent to the telomere (on the centromeric side) that contains repetitive DNA and sometimes genes and it is transcribed.","definition_xrefs":["POMBE:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal_structural_element","termid":"SO:0000628"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subtelomere","termid":"SO:0001997"}


id: PBO:0005394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol 1,3,4,5,6-pentakisphosphate (IP5) kinase","termid":"PBO:0005394"}


id: PBO:0068550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 1","termid":"PBO:0068550"}


id: GO:0062119
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that associates with chromatin to form linear elements in fission yeast. In S. pombe, the LinE complex contains four main structural components (Rec10, Rec25, Rec27, and Mug20) and other associated proteins.","definition_xrefs":["PMID:30640914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"LinE complex","termid":"GO:0062119"}


id: PBO:0058764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6888","termid":"PBO:0058764"}


id: PBO:0054714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2123","termid":"PBO:0054714"}


id: PBO:0073176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenoprotein H","termid":"PBO:0073176"}


id: SO:0002373
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that codes for scaRNA possessing a box H/ACA sequence motif, guiding the pseudouridylation of snRNAs.","definition_xrefs":["PMID:24659245","PMID:17099227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"scaRNA_gene","termid":"SO:0002339"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H_ACA_box_scaRNA_gene","synonyms":[{"name":"H/ACA scaRNA gene","type":"exact"}],"termid":"SO:0002373"}


id: FYPO:0001460
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a calcineurin-dependent response element (CDRE)-containing promoter is increased following a calcium ion stimulus.","definition_xrefs":["PomBase:mah","PMID:21811607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased transcription from CDRE promoter in response to calcium ion","synonyms":[{"name":"increased transcription from CDRE promoter in response to calcium ion during mitotic cell cycle","type":"related"},{"name":"increased transcription from CDRE promoter in response to calcium ion during vegetative growth","type":"exact"}],"termid":"FYPO:0001460"}


id: PATO:0000196
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000196 vocalization (obsolete PATO:0000196)","termid":"PATO:0000196"}


id: PBO:0075081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 131","termid":"PBO:0075081"}


id: GO:0002366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in morphology and behavior of a leukocyte resulting from exposure to a specific antigen, mitogen, cytokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell activation involved in immune response","termid":"GO:0002263"},{"relation_name":"is_a","term_name":"leukocyte activation","termid":"GO:0045321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte activation involved in immune response","synonyms":[{"name":"immune cell activation during immune response","type":"related"},{"name":"leucocyte activation during immune response","type":"related"},{"name":"leukocyte activation during immune response","type":"related"}],"termid":"GO:0002366"}


id: GO:0034862
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,6-dihydroxybenzothiazole + 1/2 O2 = 2,6,7-trihydroxybenzothiazole.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,6-dihydroxybenzothiazole monooxygenase activity (obsolete GO:0034862)","termid":"GO:0034862"}


id: PBO:0108620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IGBP1 pseudogene 3","termid":"PBO:0108620"}


id: PBO:0042695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chymotrypsin like elastase 2A","termid":"PBO:0042695"}


id: GO:0018561
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2'-aminobiphenyl-2,3-diol + O2 = H+ + 2-hydroxy-6-oxo-(2'-aminophenyl)-hexa-2,4-dienoate.","definition_xrefs":["UM-BBD_reactionID:r0457"],"gene_count":0,"genotype_count":0,"name":"obsolete 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase activity (obsolete GO:0018561)","termid":"GO:0018561"}


id: PBO:0086369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative aminopeptidase; SWAT-GFP fusion protein localizes to the endoplasmic reticulum and vacuole, while mCherry fusion localizes to the vacuole","termid":"PBO:0086369"}


id: GO:0044851
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cyclical periods of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair; one of the collection or mass of filaments growing from the skin of an animal, and forming a covering for a part of the head or for any part or the whole of the body.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological phase","termid":"GO:0044848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hair cycle phase","termid":"GO:0044851"}


id: PBO:0087494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of DUBm module of SAGA and SLIK; has roles in anchoring deubiquitination module (DUBm) into SAGA and SLIK complexes, maintaining organization and ubiquitin-binding conformation of Ubp8p, thereby contributing to overall DUBm activity; involved in preinitiation complex assembly at promoters; relocalizes to cytosol under hypoxia; human homolog ATXN7 implicated in spinocerebellar ataxia, and can complement yeast null mutant","termid":"PBO:0087494"}


id: GO:2001171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ATP biosynthetic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of purine nucleotide biosynthetic process","termid":"GO:1900373"},{"relation_name":"is_a","term_name":"positive regulation of ATP metabolic process","termid":"GO:1903580"},{"relation_name":"is_a","term_name":"regulation of ATP biosynthetic process","termid":"GO:2001169"},{"relation_name":"positively_regulates","term_name":"ATP biosynthetic process","termid":"GO:0006754"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of ATP biosynthetic process","synonyms":[{"name":"positive regulation of ATP anabolism","type":"exact"},{"name":"positive regulation of ATP biosynthesis","type":"exact"},{"name":"positive regulation of ATP formation","type":"exact"},{"name":"positive regulation of ATP regeneration","type":"related"},{"name":"positive regulation of ATP synthesis","type":"exact"}],"termid":"GO:2001171"}


id: PBO:0004977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ type DNA helicase Tlh1","termid":"PBO:0004977"}


id: PBO:0072488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 17","termid":"PBO:0072488"}


id: PBO:0086651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole and is induced in response to the DNA-damaging agent MMS; gene expression increases in response to Zymoliase treatment","termid":"PBO:0086651"}


id: GO:0008398
data:
  {"annotated_genes":["SJAG_03750"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84512],"is_not":false,"summary":null,"term":"GO:0008398"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 14alpha-methyl steroid + 3 O2 + 3 reduced [NADPH-hemoprotein reductase] = a delta14 steroid + formate + 4 H+ + 4 H2O + 3 oxidized [NADPH-hemoprotein reductase].","definition_xrefs":["RHEA:54028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"},{"relation_name":"is_a","term_name":"demethylase activity","termid":"GO:0032451"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03750":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"sterol 14-demethylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:1.14.13.70-RXN","EC:1.14.14.154","Reactome:R-HSA-194678"],"synonyms":[{"name":"cytochrome P450 51 activity","type":"narrow"},{"name":"cytochrome P450 CYP51","type":"narrow"},{"name":"lanosterol 14-alpha-demethylase activity","type":"narrow"},{"name":"lanosterol 14-demethylase activity","type":"narrow"},{"name":"lanosterol 14alpha-demethylase activity","type":"related"},{"name":"obtusufoliol 14-demethylase activity","type":"narrow"},{"name":"sterol 14-alpha-demethylase activity","type":"related"},{"name":"sterol 14alpha-demethylase activity","type":"related"}],"termid":"GO:0008398","terms_by_termid":{"GO:0008398":null}}


id: GO:0000177
data:
  {"annotated_genes":["SJAG_04084","SJAG_04321","SJAG_04818","SJAG_04006","SJAG_01818","SJAG_03179","SJAG_04153","SJAG_04824","SJAG_01521","SJAG_02991","SJAG_00854"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89096,91963,93310,98167,100515,101372,102578,103580,112052,114475],"is_not":false,"summary":null,"term":"GO:0000177"},{"annotations":[95035],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045025"}]},"cv_name":"cellular_component","definition":"A ribonuclease complex that has 3-prime to 5-prime processive hydrolytic exoribonuclease activity producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.","definition_xrefs":["PMID:17174896","PMID:20531386","PMID:26726035"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exosome (RNase complex)","termid":"GO:0000178"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00854":null,"SJAG_01521":null,"SJAG_01818":null,"SJAG_02991":null,"SJAG_03179":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04818":null,"SJAG_04824":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cytoplasmic exosome (RNase complex)","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cytoplasmic exosome (ribonuclease complex)","type":"exact"},{"name":"cytoplasmic exosome multienzyme ribonuclease complex","type":"exact"},{"name":"prokaryotic exosome multienzyme ribonuclease complex","type":"exact"}],"termid":"GO:0000177","terms_by_termid":{"GO:0000177":null,"GO:0045025":null}}


id: FYPO:0004508
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic sister chromatid separation does not occur at the rDNA repeat regions. The remainder of the sister chromatids may or may not separate.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal rDNA separation","termid":"FYPO:0000671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000631","FYPO:0000641","FYPO:0000002","FYPO:0000337","FYPO:0005447"],"is_obsolete":false,"name":"abolished rDNA separation","synonyms":[{"name":"abolished mitotic sister chromatid separation at rDNA","type":"exact"},{"name":"abolished rDNA separation during mitosis","type":"exact"},{"name":"abolished rDNA separation during mitotic cell cycle","type":"related"},{"name":"abolished rDNA separation during vegetative growth","type":"exact"},{"name":"abolished ribosomal DNA separation","type":"exact"},{"name":"abolished segregation of nucleolar rDNA","type":"related"}],"termid":"FYPO:0004508"}


id: GO:0102995
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: columbianetin + NADPH + O2 + H+ = angelicin + acetone + NADP + 2 H2O.","definition_xrefs":["EC:1.14.14.148","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"angelicin synthase activity","secondary_identifiers":["MetaCyc:RXN-9689","RHEA:27481"],"termid":"GO:0102995"}


id: PBO:0003663
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TArgeting complex Subunit","termid":"PBO:0003663"}


id: PBO:0001648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snoR02 (predicted)","termid":"PBO:0001648"}


id: PBO:0089541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S16","termid":"PBO:0089541"}


id: PBO:0043572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type VIII alpha 2 chain","termid":"PBO:0043572"}


id: _global:regulates_o_results_in_acquisition_of_features_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"This is the combination of the regulates relation with the results_in_acquisition_of_features_of relation.","definition_xrefs":["GOC:mtg_berkeley_2013"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_acquisition_of_features_of","secondary_identifiers":["GOREL:0001010"],"synonyms":[{"name":"regulates differentiation of","type":"exact"},{"name":"regulates_o_results_in_acquisition_of_features_of","type":"exact"}],"termid":"_global:regulates_o_results_in_acquisition_of_features_of"}


id: GO:0040039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Migration of a cell in a multicellular organism that, having changed its location, is required to induce normal properties in one or more cells at its new location. An example of this would be the distal tip cells of Caenorhabditis elegans.","definition_xrefs":["ISBN:087969307X","ISBN:0879694882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inductive cell migration","termid":"GO:0040039"}


id: PBO:0027610
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-replication_origin_firing_during_mitotic_G2_phase","termid":"PBO:0027610"}


id: PBO:0073695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle and kinetochore associated complex subunit 1","termid":"PBO:0073695"}


id: PBO:0070529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 28","termid":"PBO:0070529"}


id: PR:Q92365
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl3601 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q92365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L36-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC970.05","synonyms":[{"name":"Spom972h-rpl3601","type":"exact"}],"termid":"PR:Q92365"}


id: PBO:0090235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex deubiquitinating submodule subunit Sgf11","termid":"PBO:0090235"}


id: FYPO:0004534
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of ascospore release from an ascus begins earlier than normal.","definition_xrefs":["GO:0071998","PMID:16751704","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal ascospore release from ascus","termid":"FYPO:0004272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"premature ascospore release from ascus","synonyms":[{"name":"accelerated ascospore release from ascus","type":"related"},{"name":"advanced ascospore release from ascus","type":"exact"}],"termid":"FYPO:0004534"}


