# terms

id: PBO:0004827
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forced sequence to be coding","termid":"PBO:0004827"}


id: GO:0090684
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A non-GPCR transmembrane signaling receptor activity that is responsible for contact chemoreception.","definition_xrefs":["GOC:tb","GOC:hat"],"direct_ancestors":[{"relation_name":"is_a","term_name":"taste receptor activity","termid":"GO:0008527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"contact chemoreceptor activity","synonyms":[{"name":"contact chemosensation receptor activity","type":"exact"}],"termid":"GO:0090684"}


id: GO:0090698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring after plant embryonic development, by which anatomical structures are generated and organized.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic plant morphogenesis","termid":"GO:0090698"}


id: PBO:0050996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IFT122 pseudogene 3","termid":"PBO:0050996"}


id: SO:0000549
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome generated by recombination between two inversions; has a duplication at one end and presumed to have a deficiency or duplication at the other end of the inversion.","definition_xrefs":["FB:km"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intrachromosomal_duplication","termid":"SO:1000038"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inversion_derived_duplication_plus_aneuploid","synonyms":[{"name":"inversion derived duplication plus aneuploid","type":"exact"}],"termid":"SO:0000549"}


id: GO:0003243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic growth in which the left ventricle grows expanding its external boundary.","definition_xrefs":["PMID:14709543","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth involved in heart morphogenesis","termid":"GO:0003241"},{"relation_name":"part_of","term_name":"cardiac left ventricle morphogenesis","termid":"GO:0003214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"circumferential growth involved in left ventricle morphogenesis","termid":"GO:0003243"}


id: PBO:0091909
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Domain of Unknown function protein at the Cortex","termid":"PBO:0091909"}


id: PBO:0086007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; structure defines a new subfamily of the split beta-alpha-beta sandwiches; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YML108W is not an essential gene; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0086007"}


id: PBO:0017440
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_transcription_of","termid":"PBO:0017440"}


id: PR:P17871
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tbp1 gene.","definition_xrefs":["UniProtKB:P17871","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box-binding protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29E6.08","synonyms":[{"name":"Spom972h-tbp1","type":"exact"},{"name":"TATA sequence-binding protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"TATA-binding factor (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"TATA-box factor (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"TBP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"transcription initiation factor TFIID TBP subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P17871"}


id: PBO:0056213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member B10","termid":"PBO:0056213"}


id: GO:0075299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of frequency, rate or extent of zygospore formation, a process in which a thick-walled spore of some algae and fungi is formed by union of two similar sexual cells, usually serves as a resting spore, and produces the sporophytic phase.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043941"},{"relation_name":"is_a","term_name":"regulation of zygospore formation","termid":"GO:0075298"},{"relation_name":"positively_regulates","term_name":"zygospore formation","termid":"GO:0034296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of zygospore formation","termid":"GO:0075299"}


id: PBO:0003762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA turnover and ribosome assembly protein Mrt4 (predicted)","termid":"PBO:0003762"}


id: PBO:0043077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholinergic receptor nicotinic alpha 6 subunit","termid":"PBO:0043077"}


id: GO:0015355
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the movement of a monocarboxylate, any compound containing a single carboxyl group (COOH or COO-), by uniport, symport or antiport across a membrane by a carrier-mediated mechanism.","definition_xrefs":["GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"secondary active monocarboxylate transmembrane transporter activity","synonyms":[{"name":"monocarboxylate porter activity","type":"related"}],"termid":"GO:0015355"}


id: GO:0060016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a granulosa cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a granulosa cell fate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell development","termid":"GO:0002064"},{"relation_name":"part_of","term_name":"granulosa cell differentiation","termid":"GO:0060014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"granulosa cell development","termid":"GO:0060016"}


id: PR:Q10138
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- csr102 gene.","definition_xrefs":["UniProtKB:Q10138","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRAL-TRIO domain-containing protein C3H8.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H8.02","synonyms":[{"name":"Spom972h-csr102","type":"exact"}],"termid":"PR:Q10138"}


id: GO:0080084
data:
  {"annotated_genes":["SJAG_03354"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001002"}]},"cv_name":"molecular_function","definition":"Binding to a 5S rDNA sequence, encoding ribosomal 5S rRNA, which is individually transcribed by RNA polymerase III, rather than by RNA polymerase I, in species where it exists.","definition_xrefs":["PMID:12711688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rDNA binding","termid":"GO:0000182"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03354":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003677"],"is_obsolete":false,"name":"5S rDNA binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0080084","terms_by_termid":{"GO:0001002":null}}


id: PBO:0082913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytochrome b; mitochondrially-encoded subunit of ubiquinol-cytochrome c reductase complex which includes Cobp, Rip1p, Cyt1p, Cor1p, Qcr2p, Qcr6p, Qcr7p, Qcr8p, Qcr9p, and Qcr10p; number of introns varies between strains from 0 to 6, with most having 5","termid":"PBO:0082913"}


id: PBO:0085316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoinositide (PI) binding protein; involved in micronucleophagy; belongs to the PROPPIN family of proteins defined by a seven-bladed beta-propeller fold and FRRG motif required for PI binding; displays punctate cytoplasmic localization","termid":"PBO:0085316"}


id: PBO:0089936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A variant H2A.Z Pht1","termid":"PBO:0089936"}


id: GO:0098565
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the endosome membrane that faces the lumen.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lumenal side of membrane","termid":"GO:0098576"},{"relation_name":"part_of","term_name":"endosome membrane","termid":"GO:0010008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005768","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"lumenal side of endosome membrane","synonyms":[{"name":"internal leaflet of endosome membrane","type":"exact"},{"name":"internal side of endosome membrane","type":"exact"}],"termid":"GO:0098565"}


id: PBO:0111759
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain","termid":"PBO:0111759"}


id: PBO:0004322
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.41","termid":"PBO:0004322"}


id: GO:0001675
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of the acrosome from the spermatid Golgi.","definition_xrefs":["GOC:hjd","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cellular component assembly involved in morphogenesis","termid":"GO:0010927"},{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"secretory granule organization","termid":"GO:0033363"},{"relation_name":"is_a","term_name":"organelle assembly","termid":"GO:0070925"},{"relation_name":"part_of","term_name":"spermatid development","termid":"GO:0007286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"acrosome assembly","synonyms":[{"name":"acrosome formation","type":"exact"}],"termid":"GO:0001675"}


id: PBO:0029387
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_threonine_phosphorylation_at_Thr-Pro_site_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0029387"}


id: PR:O94338
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1271.05c gene.","definition_xrefs":["UniProtKB:O94338","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AN1-type zinc finger protein C1271.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1271.05c","synonyms":[{"name":"Spom972h-SPBC1271.05c","type":"exact"}],"termid":"PR:O94338"}


id: GO:0090256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of the multiplication or reproduction of cells, resulting in the expansion of a cell population that contributes to imaginal disc-derived wing morphogenesis.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"is_a","term_name":"regulation of post-embryonic development","termid":"GO:0048580"},{"relation_name":"part_of","term_name":"imaginal disc-derived wing morphogenesis","termid":"GO:0007476"},{"relation_name":"regulates","term_name":"cell proliferation involved in imaginal disc-derived wing morphogenesis","termid":"GO:0090255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell proliferation involved in imaginal disc-derived wing morphogenesis","termid":"GO:0090256"}


id: PBO:0080105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTP18 small subunit processome component","termid":"PBO:0080105"}


id: PBO:0001121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI inositol deacylase (predicted)","termid":"PBO:0001121"}


id: PBO:0090962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane protein Sls1","termid":"PBO:0090962"}


id: GO:0046643
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of gamma-delta T cell activation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell activation","termid":"GO:0050863"},{"relation_name":"regulates","term_name":"gamma-delta T cell activation","termid":"GO:0046629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of gamma-delta T cell activation","synonyms":[{"name":"regulation of gamma-delta T lymphocyte activation","type":"exact"},{"name":"regulation of gamma-delta T-cell activation","type":"exact"},{"name":"regulation of gamma-delta T-lymphocyte activation","type":"exact"}],"termid":"GO:0046643"}


id: PBO:0085405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane protein of unknown function; truncation and overexpression suppresses lethality of G-alpha protein deficiency","termid":"PBO:0085405"}


id: PBO:0061699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUPR2 pseudogene 1","termid":"PBO:0061699"}


id: PBO:0046441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epsin 2","termid":"PBO:0046441"}


id: GO:0015823
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of phenylalanine, 2-amino-3-phenylpropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid transport","termid":"GO:0046942"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"phenylalanine transport","synonyms":[{"name":"L-phenylalanine transport","type":"narrow"}],"termid":"GO:0015823"}


id: GO:1903423
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of synaptic vesicle recycling.","definition_xrefs":["GOC:PARL","GOC:pad","PMID:22745285","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle recycling","termid":"GO:1903421"},{"relation_name":"positively_regulates","term_name":"synaptic vesicle recycling","termid":"GO:0036465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of synaptic vesicle recycling","synonyms":[{"name":"activation of kiss-and-run synaptic vesicle recycling","type":"narrow"},{"name":"activation of kiss-and-stay synaptic vesicle recycling","type":"narrow"},{"name":"activation of synaptic vesicle recycling","type":"narrow"},{"name":"positive regulation of kiss-and-run synaptic vesicle recycling","type":"narrow"},{"name":"positive regulation of kiss-and-stay synaptic vesicle recycling","type":"narrow"},{"name":"up regulation of kiss-and-run synaptic vesicle recycling","type":"narrow"},{"name":"up regulation of kiss-and-stay synaptic vesicle recycling","type":"narrow"},{"name":"up regulation of synaptic vesicle recycling","type":"exact"},{"name":"up-regulation of kiss-and-run synaptic vesicle recycling","type":"narrow"},{"name":"up-regulation of kiss-and-stay synaptic vesicle recycling","type":"narrow"},{"name":"up-regulation of synaptic vesicle recycling","type":"exact"},{"name":"upregulation of kiss-and-run synaptic vesicle recycling","type":"narrow"},{"name":"upregulation of kiss-and-stay synaptic vesicle recycling","type":"narrow"},{"name":"upregulation of synaptic vesicle recycling","type":"exact"}],"termid":"GO:1903423"}


id: GO:0070974
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a POU domain of a protein. The POU domain is a bipartite DNA binding domain composed of two subunits separated by a non-conserved region of 15-55 amino acids; it is found in several eukaryotic transcription factors.","definition_xrefs":["GOC:mah","GOC:yaf","InterPro:IPR000327"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"POU domain binding","termid":"GO:0070974"}


id: PBO:0076874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 26","termid":"PBO:0076874"}


id: PBO:0004747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF complex subunit Snf59","termid":"PBO:0004747"}


id: MOD:01411
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-leucine residue to a monohydroxylated leucine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated residue","termid":"MOD:00425"},{"relation_name":"is_a","term_name":"hydroxylated leucine","termid":"MOD:01410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monohydroxylated leucine","synonyms":[{"name":"Hy1Leu","type":"exact"}],"termid":"MOD:01411"}


id: GO:0006783
data:
  {"annotated_genes":["SJAG_01372","SJAG_03173","SJAG_03961","SJAG_01155","SJAG_01786","SJAG_04944","SJAG_03862","SJAG_01841","SJAG_01192","SJAG_04397","SJAG_00097","SJAG_02876","SJAG_05283","SJAG_04109","SJAG_02896"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91833,101311,110044,112822],"is_not":false,"summary":null,"term":"GO:0006783"},{"annotations":[105669,89221],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006784"},{"annotations":[66662,88368,90480,92436,86996,91834,88877,113168],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006782"},{"annotations":[111606,93870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019354"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.","definition_xrefs":["GOC:jl","PMID:11788607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin-containing compound biosynthetic process","termid":"GO:0006779"},{"relation_name":"is_a","term_name":"heme metabolic process","termid":"GO:0042168"},{"relation_name":"is_a","term_name":"pigment biosynthetic process","termid":"GO:0046148"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_01155":null,"SJAG_01192":null,"SJAG_01372":null,"SJAG_01786":null,"SJAG_01841":null,"SJAG_02876":null,"SJAG_02896":null,"SJAG_03173":null,"SJAG_03862":null,"SJAG_03961":null,"SJAG_04109":null,"SJAG_04397":null,"SJAG_04944":null,"SJAG_05283":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"heme biosynthetic process","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:HEMESYN2-PWY"],"synonyms":[{"name":"haem biosynthesis","type":"exact"},{"name":"haem biosynthetic process","type":"exact"},{"name":"heme anabolism","type":"exact"},{"name":"heme biosynthesis","type":"exact"},{"name":"heme formation","type":"exact"},{"name":"heme synthesis","type":"exact"}],"termid":"GO:0006783","terms_by_termid":{"GO:0006782":null,"GO:0006783":null,"GO:0006784":null,"GO:0019354":null}}


id: PBO:0071977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 5","termid":"PBO:0071977"}


id: GO:0086050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which ions are transported across a membrane such that the bundle of His cardiac muscle cell membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane repolarization during cardiac muscle cell action potential","termid":"GO:0086013"},{"relation_name":"part_of","term_name":"bundle of His cell action potential","termid":"GO:0086043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"membrane repolarization during bundle of His cell action potential","synonyms":[{"name":"membrane repolarization during bundle of His cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0086050"}


id: GO:0015254
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the energy-independent facilitated diffusion of glycerol through a transmembrane aqueous pore or channel.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerol transmembrane transporter activity","termid":"GO:0015168"},{"relation_name":"is_a","term_name":"channel activity","termid":"GO:0015267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"glycerol channel activity","secondary_identifiers":["Reactome:R-HSA-432074","RHEA:29675","Reactome:R-HSA-507869","MetaCyc:TRANS-RXN-131","Reactome:R-HSA-432049","Reactome:R-HSA-507871"],"termid":"GO:0015254"}


id: PBO:0071779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P0 pseudogene 7","termid":"PBO:0071779"}


id: PATO:0002410
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A colour that is very pale yellowish brown.","definition_xrefs":["PATOC:MPATH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"light yellow brown","termid":"PATO:0002413"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beige","termid":"PATO:0002410"}


id: PBO:0003164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex subunit Apc1","termid":"PBO:0003164"}


id: MOD:00059
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to N-acetyl-L-proline.","definition_xrefs":["PubMed:2928307","RESID:AA0050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"},{"relation_name":"is_a","term_name":"alpha-amino acetylated residue","termid":"MOD:01458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"N-acetyl-L-proline","synonyms":[{"name":"(2S)-1-acetyl-2-pyrrolidinecarboxylic acid","type":"exact"},{"name":"1-acetylproline","type":"exact"},{"name":"MOD_RES N-acetylproline","type":"exact"},{"name":"N-acetyl-L-proline","type":"exact"},{"name":"N-acetylated L-proline","type":"exact"},{"name":"N-acetylproline","type":"exact"},{"name":"NAcPro","type":"exact"},{"name":"acetylproline","type":"exact"}],"termid":"MOD:00059"}


id: PBO:0069632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 909, pseudogene","termid":"PBO:0069632"}


id: GO:0007313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Polarization of the oocyte along the dorsal-ventral axis, by a gene product encoded by somatic cells. An example of this is found in Drosophila melanogaster.","definition_xrefs":["ISBN:0879694238","GOC:dph","GOC:mtg_sensu","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oocyte dorsal/ventral axis specification","termid":"GO:0007310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maternal specification of dorsal/ventral axis, oocyte, soma encoded","secondary_identifiers":["GO:0048125"],"synonyms":[{"name":"maternal determination of dorsal/ventral axis, oocyte, soma encoded","type":"exact"},{"name":"maternal specification of dorsal-ventral axis, oocyte, soma encoded","type":"exact"},{"name":"maternal specification of dorsoventral axis, oocyte, soma encoded","type":"exact"}],"termid":"GO:0007313"}


id: GO:0016035
data:
  {"annotated_genes":["SJAG_00611","SJAG_00153"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[95391,98987],"is_not":false,"summary":null,"term":"GO:0016035"}]},"cv_name":"cellular_component","definition":"A heterodimeric DNA polymerase complex that catalyzes error-prone DNA synthesis in contexts such as translesion synthesis and double-stranded break repair. First characterized in Saccharomyces, in which the subunits are Rev3p and Rev7p; a third protein, Rev1p, is often associated with the polymerase dimer.","definition_xrefs":["PMID:16631579","PMID:16971464"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA polymerase complex","termid":"GO:0042575"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00153":null,"SJAG_00611":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"zeta DNA polymerase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0016035","terms_by_termid":{"GO:0016035":null}}


id: FYPO:0002695
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of methylenetetrahydrofolate reductase (NADPH) activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0000661","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abnormal methylenetetrahydrofolate reductase (NADPH) activity","termid":"FYPO:0002695"}


id: PBO:0071390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30 pseudogene 13","termid":"PBO:0071390"}


id: PBO:0074021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 14 pseudogene 1","termid":"PBO:0074021"}


id: PBO:0087920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor TFIIB; a general transcription factor required for transcription initiation and start site selection by RNA polymerase II","termid":"PBO:0087920"}


id: PBO:0080877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"yippee like 3","termid":"PBO:0080877"}


id: FYPO:0005031
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which more ribonucleotides than normal are incorporated into the lagging strand during mitotic DNA replication.","definition_xrefs":["PMID:25664722","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased ribonucleotide incorporation into DNA","termid":"FYPO:0007680"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000293","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased ribonucleotide incorporation on lagging strand","synonyms":[{"name":"increased rNMP incorporation on lagging strand","type":"related"},{"name":"increased rNTP incorporation on lagging strand","type":"related"},{"name":"increased ribonucleotide residue incorporation on lagging strand","type":"exact"}],"termid":"FYPO:0005031"}


id: PBO:0061004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NHS antisense RNA 1","termid":"PBO:0061004"}


id: GO:0030834
data:
  {"annotated_genes":["SJAG_01993","SJAG_01894","SJAG_00279","SJAG_02700"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84292,110487,94980,88349],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051016"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the disassembly of actin filaments by the removal of actin monomers from a filament.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of actin polymerization or depolymerization","termid":"GO:0008064"},{"relation_name":"is_a","term_name":"regulation of protein depolymerization","termid":"GO:1901879"},{"relation_name":"regulates","term_name":"actin filament depolymerization","termid":"GO:0030042"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_01894":null,"SJAG_01993":null,"SJAG_02700":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0008150","GO:0030036","GO:0007010"],"is_obsolete":false,"name":"regulation of actin filament depolymerization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of actin depolymerization","type":"exact"}],"termid":"GO:0030834","terms_by_termid":{"GO:0051016":null}}


id: PBO:0002620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornithine decarboxylase Spe1 (predicted)","termid":"PBO:0002620"}


id: PBO:0050629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock transcription factor 4","termid":"PBO:0050629"}


id: PBO:0108506
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eco_evidence","termid":"PBO:0108506"}


id: PATO:0000813
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000813 odor type value (obsolete PATO:0000813)","termid":"PATO:0000813"}


id: PATO:0000279
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fertility","termid":"PATO:0000274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"male fertility","termid":"PATO:0000279"}


id: PBO:0045522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DTNB antisense RNA 1","termid":"PBO:0045522"}


id: FYPO:0005209
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the kinetochore of a chromosome is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to centromere","termid":"FYPO:0005597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein localization to kinetochore","synonyms":[{"name":"abnormal protein localisation to kinetochore","type":"exact"}],"termid":"FYPO:0005209"}


id: PBO:0084342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kynurenine aminotransferase; catalyzes formation of kynurenic acid from kynurenine; potential Cdc28p substrate","termid":"PBO:0084342"}


id: PBO:0064951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 2","termid":"PBO:0064951"}


id: PATO:0000359
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000359 water content value (obsolete PATO:0000359)","termid":"PATO:0000359"}


id: GO:0098916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling from pre to post-synapse, across the synaptic cleft.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans-synaptic signaling","termid":"GO:0099537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"anterograde trans-synaptic signaling","termid":"GO:0098916"}


id: PBO:0064159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group IID","termid":"PBO:0064159"}


id: PBO:0041308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 2 open reading frame 42","termid":"PBO:0041308"}


id: PBO:0002779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S18 (predicted)","termid":"PBO:0002779"}


id: SO:0002249
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A CDS region corresponding to a mature protein region of a polypeptide.","direct_ancestors":[{"relation_name":"is_a","term_name":"CDS_region","termid":"SO:0000851"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mature_protein_region_of_CDS","synonyms":[{"name":"INSDC_feature:mat_peptide","type":"exact"},{"name":"mature protein region of CDS","type":"exact"}],"termid":"SO:0002249"}


id: PBO:0078782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 7-1","termid":"PBO:0078782"}


id: PBO:0088348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH-dependent reductase for Dph3, Cbr1","termid":"PBO:0088348"}


id: SO:0000642
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region that can be transcribed into a signal recognition particle RNA (SRP RNA).","direct_ancestors":[{"relation_name":"is_a","term_name":"non_protein_coding","termid":"SO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRP_RNA_encoding","synonyms":[{"name":"SRP RNA encoding","type":"exact"}],"termid":"SO:0000642"}


id: PBO:0030090
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_dipeptide_nitrogen_source","termid":"PBO:0030090"}


id: GO:0034744
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the tumor suppressor protein adenomatous polyposis coli (APC), the small GTPase Cdc42, and the Rac1 and Cdc42 effector IQGAP1; may play a role in cytoskeleton organization and cell migration.","definition_xrefs":["PMID:15572129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"GTPase complex","termid":"GO:1905360"},{"relation_name":"part_of","term_name":"cell leading edge","termid":"GO:0031252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"APC-IQGAP1-Cdc42 complex","termid":"GO:0034744"}


id: PR:Q9P7F9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ctr5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7F9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper transport protein ctr5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1142.05","synonyms":[{"name":"Spom972h-ctr5","type":"exact"},{"name":"copper transporter 5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7F9"}


id: PBO:0028347
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_CENP-A_containing_chromatin","termid":"PBO:0028347"}


id: PBO:0053351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 242","termid":"PBO:0053351"}


id: GO:0072112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a glomerular visceral epithelial cell. A glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal filtration cell differentiation","termid":"GO:0061318"},{"relation_name":"is_a","term_name":"glomerular epithelial cell differentiation","termid":"GO:0072311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"podocyte differentiation","synonyms":[{"name":"glomerular visceral epithelial cell differentiation","type":"exact"}],"termid":"GO:0072112"}


id: PR:Q9P3W2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atg1803 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P3W2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SVP1-like protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC458.06","synonyms":[{"name":"Spom972h-atg1803","type":"exact"}],"termid":"PR:Q9P3W2"}


id: GO:0003377
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A sphingosine-1-phosphate signaling pathway that modulates the rate, frequency, or extent of apoptosis.","definition_xrefs":["GOC:ascb_2009","GOC:signaling","GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of apoptosis by sphingosine-1-phosphate signaling pathway (obsolete GO:0003377)","synonyms":[{"name":"regulation of apoptosis by sphingolipid signaling pathway","type":"broad"},{"name":"regulation of apoptosis by sphingolipid signalling pathway","type":"broad"}],"termid":"GO:0003377"}


id: PBO:0086024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; transcript accumulates in response to any combination of stress conditions","termid":"PBO:0086024"}


id: GO:0034216
data:
  {"annotated_genes":["SJAG_04673"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96770],"is_not":false,"summary":null,"term":"GO:0034216"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: thiamine(out) + H+(out) = thiamine(in) + H+(in). In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiamine:proton symporter activity","termid":"GO:0034215"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04673":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"high-affinity thiamine:proton symporter activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"high affinity thiamin:hydrogen symporter activity","type":"exact"},{"name":"high-affinity thiamin:hydrogen symporter activity","type":"exact"},{"name":"high-affinity thiamin:proton symporter activity","type":"exact"},{"name":"high-affinity thiamine:hydrogen symporter activity","type":"exact"}],"termid":"GO:0034216","terms_by_termid":{"GO:0034216":null}}


id: GO:0034606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The response by the male to a hermaphrodite after initial contact following mate finding. The male stops forward locomotion, presses the ventral side of his tail against his partner's body, and begins moving backward along the hermaphrodite. Male response behavior is initiated when sensory neurons located in the rays of his tail contact a potential mate.","definition_xrefs":["PMID:18050467","WB_REF:WBPaper00002109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male mating behavior","termid":"GO:0060179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to hermaphrodite contact","termid":"GO:0034606"}


id: PBO:0052516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 30","termid":"PBO:0052516"}


id: PBO:0075659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spectrin beta, non-erythrocytic 1","termid":"PBO:0075659"}


id: GO:1901208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of heart looping.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heart looping","termid":"GO:1901207"},{"relation_name":"is_a","term_name":"negative regulation of morphogenesis of an epithelium","termid":"GO:1905331"},{"relation_name":"negatively_regulates","term_name":"heart looping","termid":"GO:0001947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of heart looping","synonyms":[{"name":"down regulation of cardiac looping","type":"exact"},{"name":"down regulation of heart looping","type":"exact"},{"name":"down-regulation of cardiac looping","type":"exact"},{"name":"down-regulation of heart looping","type":"exact"},{"name":"downregulation of cardiac looping","type":"exact"},{"name":"downregulation of heart looping","type":"exact"},{"name":"inhibition of cardiac looping","type":"exact"},{"name":"inhibition of heart looping","type":"narrow"},{"name":"negative regulation of cardiac looping","type":"exact"}],"termid":"GO:1901208"}


id: PBO:0062225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily AU member 1","termid":"PBO:0062225"}


id: PBO:0030877
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_vegetative_cell_population_growth","termid":"PBO:0030877"}


id: PBO:0049259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"goosecoid homeobox","termid":"PBO:0049259"}


id: PBO:0041758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclase associated actin cytoskeleton regulatory protein 2","termid":"PBO:0041758"}


id: GO:0030680
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonuclease P complex that contains a single RNA molecule that is necessary and usually sufficient for catalysis, and a single protein molecule. Examples of this complex are found in Bacterial species.","definition_xrefs":["GOC:mah","PMID:12045094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonuclease P complex","termid":"GO:0030677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"dimeric ribonuclease P complex","synonyms":[{"name":"dimeric RNase P complex","type":"exact"}],"termid":"GO:0030680"}


id: GO:0061541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a rhabdomere are generated and organized. The rhabdomere is the organelle on the apical surface of a photoreceptor cell that contains the visual pigments.","definition_xrefs":["PMID:22113834","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection morphogenesis","termid":"GO:0048812"},{"relation_name":"part_of","term_name":"photoreceptor cell morphogenesis","termid":"GO:0008594"},{"relation_name":"part_of","term_name":"rhabdomere development","termid":"GO:0042052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhabdomere morphogenesis","termid":"GO:0061541"}


id: MOD:00104
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to L-proline amide.","definition_xrefs":["PubMed:4982117","PubMed:5760861","RESID:AA0095"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-proline amide","synonyms":[{"name":"(2S)-pyrrolidine-2-carboxamide","type":"exact"},{"name":"L-proline amide","type":"exact"},{"name":"MOD_RES Proline amide","type":"exact"},{"name":"ProN","type":"exact"},{"name":"amidated L-proline","type":"exact"},{"name":"prolinamide","type":"exact"}],"termid":"MOD:00104"}


id: PBO:0061118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLR family pyrin domain containing 8","termid":"PBO:0061118"}


id: PBO:0089850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing coactivator Srm160","termid":"PBO:0089850"}


id: PBO:0067448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 570, pseudogene","termid":"PBO:0067448"}


id: GO:0043274
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a phospholipase.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"phospholipase binding","termid":"GO:0043274"}


id: GO:2000461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of eukaryotic cell surface binding.","definition_xrefs":["GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of eukaryotic cell surface binding (obsolete GO:2000461)","synonyms":[{"name":"negative regulation of eukaryotic cell surface binding","type":"exact"}],"termid":"GO:2000461"}


id: PR:Q10322
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An E3 ubiquitin-protein ligase dma1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"E3 ubiquitin-protein ligase dma1","termid":"PR:000027845"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase dma1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G8.10c","secondary_identifiers":["UniProtKB:Q10322"],"synonyms":[{"name":"Spom972h-dma1","type":"exact"}],"termid":"PR:Q10322"}


id: PBO:0057554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 670","termid":"PBO:0057554"}


id: PBO:0075796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sex determining region Y","termid":"PBO:0075796"}


id: SO:0000121
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A single stranded oligo used for polymerase chain reaction.","direct_ancestors":[{"relation_name":"has_quality","term_name":"forward","termid":"SO:0001030"},{"relation_name":"is_a","term_name":"primer","termid":"SO:0000112"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forward_primer","synonyms":[{"name":"DNA forward primer","type":"exact"},{"name":"forward DNA primer","type":"exact"},{"name":"forward primer","type":"exact"},{"name":"forward primer oligo","type":"exact"},{"name":"forward primer oligonucleotide","type":"exact"},{"name":"forward primer polynucleotide","type":"exact"},{"name":"forward primer sequence","type":"exact"}],"termid":"SO:0000121"}


id: GO:0010877
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of lipids into cells that is part of their accumulation and maintenance.","definition_xrefs":["GOC:tb","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid transport","termid":"GO:0006869"},{"relation_name":"part_of","term_name":"lipid storage","termid":"GO:0019915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"lipid transport involved in lipid storage","termid":"GO:0010877"}


id: GO:0016929
data:
  {"annotated_genes":["SJAG_16454","SJAG_02214"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86299,102253],"is_not":false,"summary":null,"term":"GO:0016929"}]},"cv_name":"molecular_function","definition":"An thiol-dependent isopeptidase activity that cleaves SUMO from a target protein to which it is conjugated.","definition_xrefs":["PMID:10094048","PMID:11265250","PMID:23746258","GOC:rn","PMID:11031248"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysteine-type peptidase activity","termid":"GO:0008234"},{"relation_name":"is_a","term_name":"ubiquitin-like protein peptidase activity","termid":"GO:0019783"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02214":null,"SJAG_16454":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008233"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0140096","GO:0008233","GO:0003674"],"is_obsolete":false,"name":"deSUMOylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0070140"],"synonyms":[{"name":"SUMO-specific isopeptidase activity","type":"exact"},{"name":"SUMO-specific protease activity","type":"exact"},{"name":"SUSP","type":"narrow"},{"name":"ULP","type":"narrow"}],"termid":"GO:0016929","terms_by_termid":{"GO:0016929":null}}


id: PBO:0030731
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_multinucleate_vegetative_cell_with_central_constriction","termid":"PBO:0030731"}


id: GO:0002799
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of antibacterial peptide secretion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of antimicrobial peptide secretion","termid":"GO:0002796"},{"relation_name":"is_a","term_name":"regulation of antibacterial peptide secretion","termid":"GO:0002797"},{"relation_name":"is_a","term_name":"positive regulation of antibacterial peptide production","termid":"GO:0002803"},{"relation_name":"positively_regulates","term_name":"antibacterial peptide secretion","termid":"GO:0002779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0010467"],"is_obsolete":false,"name":"positive regulation of antibacterial peptide secretion","synonyms":[{"name":"activation of antibacterial peptide secretion","type":"narrow"},{"name":"stimulation of antibacterial peptide secretion","type":"narrow"},{"name":"up regulation of antibacterial peptide secretion","type":"exact"},{"name":"up-regulation of antibacterial peptide secretion","type":"exact"},{"name":"upregulation of antibacterial peptide secretion","type":"exact"}],"termid":"GO:0002799"}


id: PBO:0047720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flavin containing dimethylaniline monoxygenase 11, pseudogene","termid":"PBO:0047720"}


id: GO:0018114
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-threonine = D-threonine.","definition_xrefs":["RHEA:13913","EC:5.1.1.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"threonine racemase activity","secondary_identifiers":["MetaCyc:THREONINE-RACEMASE-RXN","KEGG_REACTION:R01467"],"termid":"GO:0018114"}


id: GO:0052783
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving reuteran, a soluble glucan polymer with mainly alpha-(1->4) glycosidic linkages and significant amounts of alpha-(1->6) and alpha-(1->4,6) glucosidic linkages.","definition_xrefs":["PMID:15256553","PMID:16000808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-glucan metabolic process","termid":"GO:0030978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"reuteran metabolic process","termid":"GO:0052783"}


id: GO:0050482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of arachidonic acid from a cell or a tissue.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosanoid secretion","termid":"GO:0032309"},{"relation_name":"is_a","term_name":"arachidonate transport","termid":"GO:1903963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"arachidonate secretion","synonyms":[{"name":"arachidonic acid secretion","type":"exact"}],"termid":"GO:0050482"}


id: PBO:0087110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal RNA processing element (RRPE)-binding protein; involved in the glucose-induced transition from quiescence to growth; restricted to nucleus in quiescent cells, released into cytoplasm after glucose repletion; binds Sin3p; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0087110"}


id: GO:0106345
data:
  {"annotated_genes":["SJAG_00281","SJAG_01432"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97121,101209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030267"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: glycolate + NAD(P)+ = glyoxylate + NAD(P)H.","definition_xrefs":["GOC:curators","PMID:3548703"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00281":null,"SJAG_01432":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"glyoxylate reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106345","terms_by_termid":{"GO:0030267":null}}


id: PBO:0065626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase non-receptor type 4","termid":"PBO:0065626"}


id: PBO:0057169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 320e","termid":"PBO:0057169"}


id: FYPO:0002823
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle pole body does not occur during interphase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to mitotic spindle pole body","termid":"FYPO:0000941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to mitotic spindle pole body during interphase","synonyms":[{"name":"abolished protein localization to spindle pole body during interphase during mitotic cell cycle","type":"related"},{"name":"protein absent from mitotic spindle pole body during interphase","type":"related"},{"name":"protein localisation to mitotic spindle pole body abolished during interphase","type":"exact"},{"name":"protein localization to mitotic SPB abolished during interphase","type":"exact"},{"name":"protein localization to mitotic spindle pole body abolished during interphase","type":"exact"},{"name":"protein localization to spindle pole body abolished during interphase during vegetative growth","type":"exact"}],"termid":"FYPO:0002823"}


id: GO:0042841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D-glucuronate, the D-enantiomer of glucuronate.","definition_xrefs":["GOC:jsg","GOC:jl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-glucuronate metabolic process","termid":"GO:0042839"},{"relation_name":"is_a","term_name":"glucuronate biosynthetic process","termid":"GO:0046399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"D-glucuronate biosynthetic process","synonyms":[{"name":"D-glucuronate anabolism","type":"exact"},{"name":"D-glucuronate biosynthesis","type":"exact"},{"name":"D-glucuronate formation","type":"exact"},{"name":"D-glucuronate synthesis","type":"exact"}],"termid":"GO:0042841"}


id: GO:0072585
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: xanthosine + H2O = D-ribose + xanthine.","definition_xrefs":["PMID:21235647","GOC:kad","MetaCyc:RXN0-363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleosidase activity","termid":"GO:0008477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016798","GO:0016787"],"is_obsolete":false,"name":"xanthosine nucleotidase activity","secondary_identifiers":["RHEA:27994"],"synonyms":[{"name":"xanthosine ribohydrolase activity","type":"exact"}],"termid":"GO:0072585"}


id: GO:0022022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of septal cells, resulting in the expansion of a cell population.","definition_xrefs":["GOC:cls","GOC:dgh","GO_REF:0000021","GOC:jid","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subpallium cell proliferation in forebrain","termid":"GO:0022012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"septal cell proliferation","synonyms":[{"name":"septum cell proliferation","type":"exact"}],"termid":"GO:0022022"}


id: PBO:0083580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; substantially overlaps YMR295C; deletion causes sensitivity to unfolded protein response-inducing agents","termid":"PBO:0083580"}


id: GO:1900604
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of tensidol A.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"tensidol A metabolic process","termid":"GO:1900603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0019748","GO:0044281"],"is_obsolete":false,"name":"tensidol A catabolic process","synonyms":[{"name":"tensidol A breakdown","type":"exact"},{"name":"tensidol A catabolism","type":"exact"},{"name":"tensidol A degradation","type":"exact"}],"termid":"GO:1900604"}


id: PBO:0070739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10a pseudogene 9","termid":"PBO:0070739"}


id: GO:0098966
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the extracellular matrix that lies within the perisynaptic space.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagen-containing extracellular matrix","termid":"GO:0062023"},{"relation_name":"part_of","term_name":"synapse-associated extracellular matrix","termid":"GO:0099535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"perisynaptic extracellular matrix","synonyms":[{"name":"extrasynaptic extracellular matrix","type":"exact"},{"name":"perisynaptic ECM","type":"exact"}],"termid":"GO:0098966"}


id: PBO:0042523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 2 associated protein 2 pseudogene 1","termid":"PBO:0042523"}


id: GO:1903745
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of nematode pharyngeal pumping.","definition_xrefs":["GOC:TermGenie","PMID:25329901","GOC:kmv","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nematode pharyngeal pumping","termid":"GO:0043051"},{"relation_name":"is_a","term_name":"negative regulation of eating behavior","termid":"GO:1903999"},{"relation_name":"negatively_regulates","term_name":"nematode pharyngeal pumping","termid":"GO:0043050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of nematode pharyngeal pumping","synonyms":[{"name":"down regulation of pharyngeal pumping","type":"exact"},{"name":"down regulation of pumping behavior","type":"related"},{"name":"down-regulation of pharyngeal pumping","type":"exact"},{"name":"down-regulation of pumping behavior","type":"related"},{"name":"downregulation of pharyngeal pumping","type":"exact"},{"name":"downregulation of pumping behavior","type":"related"},{"name":"inhibition of pharyngeal pumping","type":"narrow"},{"name":"inhibition of pumping behavior","type":"related"},{"name":"negative regulation of pumping behavior","type":"related"}],"termid":"GO:1903745"}


id: PBO:0057312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 517c","termid":"PBO:0057312"}


id: FYPO:0008204
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell exhibits randomly misoriented actin and myosin II filaments, eventually forming a regular orthogonal actomyosin contractile ring. Although the onset of filaments assembly is not delayed, the cell takes more time complete the formation of an orthogonal actomyosin contractile ring.","direct_ancestors":[{"relation_name":"is_a","term_name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0004803","FYPO:0001320","FYPO:0005447","FYPO:0000032","FYPO:0001985"],"is_obsolete":false,"name":"delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments","termid":"FYPO:0008204"}


id: GO:0021931
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of neuroblasts that will give rise to neurons of the lateral pontine nucleus and the locus ceruleus.","definition_xrefs":["GOC:dgh","GOC:dph","GOC:jid","PMID:15157725","GOC:cls","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell proliferation in external granule layer","termid":"GO:0021924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rostral hindbrain neuronal precursor cell proliferation","termid":"GO:0021931"}


id: GO:0048502
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + thiamine(out) = ADP + H+ + phosphate + thiamine(in).","definition_xrefs":["PMID:9535878","RHEA:29811","PMID:12175925"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiamine transmembrane transporter activity","termid":"GO:0015234"},{"relation_name":"is_a","term_name":"ABC-type azole transporter activity","termid":"GO:0140394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ABC-type thiamine transporter activity","secondary_identifiers":["GO:0015619","TC:3.A.1.19.1","EC:7.6.2.15","MetaCyc:ABC-32-RXN"],"synonyms":[{"name":"ATP-dependent thiamine transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled thiamine transmembrane transporter activity","type":"related"},{"name":"TPP transporting ATPase activity","type":"related"},{"name":"thiamin pyrophosphate ABC transporter","type":"exact"},{"name":"thiamin pyrophosphate porter activity","type":"broad"},{"name":"thiamin pyrophosphate transporting ATPase activity","type":"related"},{"name":"thiamin-transporting ATPase activity","type":"related"},{"name":"thiamine ABC transporter","type":"exact"},{"name":"thiamine pyrophosphate-transporting ATPase activity","type":"related"},{"name":"thiamine-transporting ATPase activity","type":"related"}],"termid":"GO:0048502"}


id: GO:0046552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a photoreceptor cell. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron fate commitment","termid":"GO:0048663"},{"relation_name":"part_of","term_name":"photoreceptor cell differentiation","termid":"GO:0046530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photoreceptor cell fate commitment","termid":"GO:0046552"}


id: GO:0016331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of embryonic epithelia are generated and organized.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"morphogenesis of embryonic epithelium","termid":"GO:0016331"}


id: PBO:0000773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complexed with Cdc5 protein Cwf19","termid":"PBO:0000773"}


id: PBO:0059985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 5","termid":"PBO:0059985"}


id: PBO:0086671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by fungal homology comparisons and RT-PCR; identified in a screen for mutants with decreased levels of rDNA transcription","termid":"PBO:0086671"}


id: GO:0018948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving xylene, a mixture of three colorless, aromatic hydrocarbon liquids, ortho-, meta- and para-xylene.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"hydrocarbon metabolic process","termid":"GO:0120252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"xylene metabolic process","synonyms":[{"name":"xylene metabolism","type":"exact"}],"termid":"GO:0018948"}


id: GO:0071181
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of the intracellular domain of Notch3 (ICN3), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling.","definition_xrefs":["PMID:12370315"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"MAML3-RBP-Jkappa-ICN3 complex","synonyms":[{"name":"MAML3-RBP-Jkappa-Notch3 complex","type":"exact"}],"termid":"GO:0071181"}


id: PBO:0079250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 23","termid":"PBO:0079250"}


id: GO:1900359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of nigerotriose transport.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of nigerotriose transport","termid":"GO:1900357"},{"relation_name":"positively_regulates","term_name":"nigerotriose transport","termid":"GO:2001091"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of nigerotriose transport","synonyms":[{"name":"activation of nigerotriose transport","type":"narrow"},{"name":"up regulation of nigerotriose transport","type":"exact"},{"name":"up-regulation of nigerotriose transport","type":"exact"},{"name":"upregulation of nigerotriose transport","type":"exact"}],"termid":"GO:1900359"}


id: GO:1900983
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving vindoline.","definition_xrefs":["GOC:TermGenie","GOC:yaf","PMID:23864440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid indole alkaloid metabolic process","termid":"GO:0046447"},{"relation_name":"is_a","term_name":"acetate ester metabolic process","termid":"GO:1900619"},{"relation_name":"is_a","term_name":"organic heteropentacyclic compound metabolic process","termid":"GO:1901376"},{"relation_name":"is_a","term_name":"tertiary alcohol metabolic process","termid":"GO:1902644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"vindoline metabolic process","synonyms":[{"name":"vindoline metabolism","type":"exact"}],"termid":"GO:1900983"}


id: PBO:0054972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2386","termid":"PBO:0054972"}


id: GO:0048538
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematopoietic or lymphoid organ development","termid":"GO:0048534"},{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thymus development","termid":"GO:0048538"}


id: PBO:0039560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 53","termid":"PBO:0039560"}


id: SOFP:ontology_term
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"A term from some ontology classifying the feature","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ontology_term","termid":"SOFP:ontology_term"}


id: PBO:0065392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 20S subunit alpha 1","termid":"PBO:0065392"}


id: GO:0002785
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of antimicrobial peptide production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of production of molecular mediator of immune response","termid":"GO:0002701"},{"relation_name":"is_a","term_name":"regulation of antimicrobial peptide production","termid":"GO:0002784"},{"relation_name":"is_a","term_name":"negative regulation of antimicrobial humoral response","termid":"GO:0008348"},{"relation_name":"negatively_regulates","term_name":"antimicrobial peptide production","termid":"GO:0002775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of antimicrobial peptide production","synonyms":[{"name":"down regulation of antimicrobial peptide production","type":"exact"},{"name":"down-regulation of antimicrobial peptide production","type":"exact"},{"name":"downregulation of antimicrobial peptide production","type":"exact"},{"name":"inhibition of antimicrobial peptide production","type":"narrow"}],"termid":"GO:0002785"}


id: PBO:0064467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase delta 4, accessory subunit","termid":"PBO:0064467"}


id: GO:0010987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of high-density lipoprotein particle clearance. High-density lipoprotein particle clearance is the process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of high-density lipoprotein particle clearance","termid":"GO:0010982"},{"relation_name":"is_a","term_name":"negative regulation of lipoprotein particle clearance","termid":"GO:0010985"},{"relation_name":"negatively_regulates","term_name":"high-density lipoprotein particle clearance","termid":"GO:0034384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of high-density lipoprotein particle clearance","termid":"GO:0010987"}


id: GO:0050449
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: all-trans-geranylgeranyl diphosphate = casbene + diphosphate.","definition_xrefs":["RHEA:14901","EC:4.2.3.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene synthase activity","termid":"GO:0010333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"casbene synthase activity","secondary_identifiers":["KEGG_REACTION:R02064","MetaCyc:CASBENE-SYNTHASE-RXN"],"synonyms":[{"name":"casbene synthetase activity","type":"related"},{"name":"geranylgeranyl-diphosphate diphosphate-lyase (cyclizing)","type":"related"},{"name":"geranylgeranyl-diphosphate diphosphate-lyase (cyclizing, casbene-forming)","type":"related"}],"termid":"GO:0050449"}


id: PBO:0060283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin heavy chain gene cluster antisense RNA","termid":"PBO:0060283"}


id: GO:2000711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of maintenance of meiotic sister chromatid cohesion in the centromeric region.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of maintenance of meiotic sister chromatid cohesion","termid":"GO:0034096"},{"relation_name":"is_a","term_name":"regulation of maintenance of meiotic sister chromatid cohesion, centromeric","termid":"GO:2000709"},{"relation_name":"positively_regulates","term_name":"maintenance of meiotic sister chromatid cohesion, centromeric","termid":"GO:0035875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of maintenance of meiotic sister chromatid cohesion, centromeric","synonyms":[{"name":"positive regulation of maintenance of centromeric meiotic sister chromatin cohesion","type":"exact"},{"name":"positive regulation of maintenance of meiotic sister chromatin cohesion at centromere","type":"exact"},{"name":"positive regulation of maintenance of sister chromatin cohesion at centromere at meiosis I","type":"exact"}],"termid":"GO:2000711"}


id: PR:P0CS92
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC959.06c gene.","definition_xrefs":["UniProtKB:P0CS92","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C959.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC959.06c","synonyms":[{"name":"Spom972h-SPAC959.06c","type":"exact"}],"termid":"PR:P0CS92"}


id: PBO:0065401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 20S subunit alpha 4","termid":"PBO:0065401"}


id: PBO:0031340
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_N-ethylmaleimide","termid":"PBO:0031340"}


id: GO:0042921
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A nuclear receptor-mediated signaling pathway initiated by a glucocorticoid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear receptor-mediated corticosteroid signaling pathway","termid":"GO:0031958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"nuclear receptor-mediated glucocorticoid signaling pathway","synonyms":[{"name":"glucocorticoid receptor signaling pathway","type":"broad"},{"name":"glucocorticoid receptor signalling pathway","type":"broad"},{"name":"intracellular glucocorticoid receptor signaling pathway","type":"exact"}],"termid":"GO:0042921"}


id: PR:Q9P6I1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ubc16 gene.","definition_xrefs":["UniProtKB:Q9P6I1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-conjugating enzyme E2 16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1198.09","synonyms":[{"name":"E2 ubiquitin-conjugating enzyme 16 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ubc16","type":"exact"},{"name":"ubiquitin carrier protein 16 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-protein ligase 16 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6I1"}


id: GO:0036179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for an osteoclast cell to attain its fully functional state. An osteoclast is a specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, and which typically differentiates from monocytes.","definition_xrefs":["GOC:pg","CL:0000092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell maturation","termid":"GO:0048469"},{"relation_name":"part_of","term_name":"osteoclast development","termid":"GO:0036035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"osteoclast maturation","synonyms":[{"name":"chondroclast maturation","type":"related"}],"termid":"GO:0036179"}


id: GO:1990221
data:
  {"annotated_genes":["SJAG_04397","SJAG_00894","SJAG_00186","SJAG_01063","SJAG_01238","SJAG_03862","SJAG_00532"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[110040,105823,94343,88986,89216,99217,103004],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099128"}]},"cv_name":"cellular_component","definition":"A protein complex capable of cysteine desulfurase activity decomposing L-cysteine to L-alanine and sulfur. It belongs to a ubiquitous family of pyridoxal 5-phosphate (PLP)-dependent enzymes.","definition_xrefs":["GOC:bhm","PMID:11827487"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfurtransferase complex","termid":"GO:1990228"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00186":null,"SJAG_00532":null,"SJAG_00894":null,"SJAG_01063":null,"SJAG_01238":null,"SJAG_03862":null,"SJAG_04397":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005829","GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"L-cysteine desulfurase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"IscS","type":"narrow"},{"name":"NifS","type":"narrow"},{"name":"SufS complex","type":"narrow"}],"termid":"GO:1990221","terms_by_termid":{"GO:0099128":null}}


id: FYPO:0001801
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A viability phenotype in which a cell is unable to survive at a high temperature at which wild-type cells survive.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable cell at high temperature (obsolete FYPO:0001801)","synonyms":[{"name":"lethal in cell at high temperature","type":"exact"}],"termid":"FYPO:0001801"}


id: PBO:0029396
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_nucleoplasm_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0029396"}


id: GO:1905617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of miRNA-mediated gene silencing by inhibition of translation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:23409027","GOC:PARL","GOC:bc"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of miRNA-mediated gene silencing by inhibition of translation (obsolete GO:1905617)","synonyms":[{"name":"down regulation of down regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"down regulation of down-regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"down regulation of downregulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"down regulation of gene silencing by miRNA, negative regulation of translation","type":"exact"},{"name":"down regulation of inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"down regulation of miRNA mediated inhibition of translation","type":"exact"},{"name":"down regulation of miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"down regulation of negative regulation of translation involved in gene silencing by microRNA","type":"exact"},{"name":"down-regulation of down regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"down-regulation of down-regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"down-regulation of downregulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"down-regulation of gene silencing by miRNA, negative regulation of translation","type":"exact"},{"name":"down-regulation of inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"down-regulation of miRNA mediated inhibition of translation","type":"exact"},{"name":"down-regulation of miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"down-regulation of negative regulation of translation involved in gene silencing by microRNA","type":"exact"},{"name":"downregulation of down regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"downregulation of down-regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"downregulation of downregulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"downregulation of gene silencing by miRNA, negative regulation of translation","type":"exact"},{"name":"downregulation of inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"downregulation of miRNA mediated inhibition of translation","type":"exact"},{"name":"downregulation of miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"downregulation of negative regulation of translation involved in gene silencing by microRNA","type":"exact"},{"name":"inhibition of down regulation of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"inhibition of down-regulation of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"inhibition of downregulation of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"inhibition of gene silencing by miRNA, negative regulation of translation","type":"narrow"},{"name":"inhibition of inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"inhibition of miRNA mediated inhibition of translation","type":"narrow"},{"name":"inhibition of miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"inhibition of negative regulation of translation involved in gene silencing by microRNA","type":"narrow"},{"name":"negative regulation of down regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"negative regulation of down-regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"negative regulation of downregulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"negative regulation of gene silencing by miRNA, negative regulation of translation","type":"exact"},{"name":"negative regulation of inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"negative regulation of miRNA mediated inhibition of translation","type":"exact"},{"name":"negative regulation of miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"negative regulation of negative regulation of translation involved in gene silencing by microRNA","type":"exact"}],"termid":"GO:1905617"}


id: PBO:0079035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Val (anticodon AAC) 4-1","termid":"PBO:0079035"}


id: PBO:0081148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP69 zinc finger protein B","termid":"PBO:0081148"}


id: PATO:0001682
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Magnetism"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnetism","termid":"PATO:0001682"}


id: PBO:0061675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 62 C-terminal like","termid":"PBO:0061675"}


id: PBO:0084988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments","termid":"PBO:0084988"}


id: PBO:0072928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 9","termid":"PBO:0072928"}


id: PBO:0034771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M1 aminopeptidase, nascent chain-associated protein (predicted)","termid":"PBO:0034771"}


id: SO:0001952
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region immediately adjacent to a promoter which may or may not contain transcription factor binding sites.","definition_xrefs":["EBI:nj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptional_cis_regulatory_region","termid":"SO:0001055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter_flanking_region","synonyms":[{"name":"promoter flanking region","type":"exact"}],"termid":"SO:0001952"}


id: GO:0019043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a virus establishes a latent state within its host, either as an integrated provirus within the host genome or as an episome, where viral genome remains in the cytoplasm or nucleus as distinct objects.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral latency","termid":"GO:0019042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of viral latency","secondary_identifiers":["GO:0075601"],"synonyms":[{"name":"lysogenic commitment","type":"exact"},{"name":"phage lysogeny","type":"narrow"}],"termid":"GO:0019043"}


id: PBO:0040198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate synthetase 1 pseudogene 11","termid":"PBO:0040198"}


id: PBO:0085435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Poly(A) polymerase; one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs; required for gene looping","termid":"PBO:0085435"}


id: GO:0102933
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-4-amino-4,6-dideoxy-alpha-D-mannose + 2-oxoglutarate = GDP-4-dehydro-6-deoxy-alpha-D-mannose + L-glutamate.","definition_xrefs":["GOC:pz","RHEA:36779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016769","GO:0003824"],"is_obsolete":false,"name":"GDP-4-dehydro-6-deoxy-D-mannose-4-aminotransferase activity","secondary_identifiers":["EC:2.6.1.102","MetaCyc:RXN-8953"],"termid":"GO:0102933"}


id: PBO:0069053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 299, pseudogene","termid":"PBO:0069053"}


id: GO:0061524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the formation of the central canal of the spinal cord from its formation to the mature structure. The central canal is a spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord.","definition_xrefs":["GOC:cvs","GOC:dph","PMID:23409159"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"spinal cord development","termid":"GO:0021510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"central canal development","termid":"GO:0061524"}


id: GO:0004973
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete N-methyl-D-aspartate receptor-associated protein activity (obsolete GO:0004973)","synonyms":[{"name":"N-methyl-D-aspartate receptor-associated protein activity","type":"exact"}],"termid":"GO:0004973"}


id: GO:0002359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a B-1 B cell by cell division. Follows B cell activation.","definition_xrefs":["GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell proliferation","termid":"GO:0042100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"B-1 B cell proliferation","synonyms":[{"name":"B-1 B lymphocyte proliferation","type":"exact"},{"name":"B-1 B-cell proliferation","type":"exact"},{"name":"B-1 B-lymphocyte proliferation","type":"exact"}],"termid":"GO:0002359"}


id: FYPO:0001296
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of oleoyl-CoA ligase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal oleoyl-CoA ligase activity","synonyms":[{"name":"normal oleoyl-CoA synthetase activity","type":"exact"}],"termid":"FYPO:0001296"}


id: GO:0035629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Addition of a carbohydrate or carbohydrate derivative unit via a nitrogen (N) atom of the N-terminal amino acid of a protein.","definition_xrefs":["GOC:bf","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete N-terminal protein amino acid N-linked glycosylation (obsolete GO:0035629)","termid":"GO:0035629"}


id: PBO:0078940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon CCT) 7-1","termid":"PBO:0078940"}


id: GO:0061679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The Entner-Doudoroff pathway that proceeds through a D-gluconate intermediate.","definition_xrefs":["GOC:dph","PMID:12921536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Entner-Doudoroff pathway","termid":"GO:0061678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"Entner-Doudoroff pathway through gluconate","synonyms":[{"name":"gluconate pathway","type":"related"}],"termid":"GO:0061679"}


id: GO:0050217
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxyhexan-3-one = 2 propanal.","definition_xrefs":["EC:4.1.2.35","RHEA:11100"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"propioin synthase activity","secondary_identifiers":["KEGG_REACTION:R00038","MetaCyc:PROPIOIN-SYNTHASE-RXN"],"synonyms":[{"name":"4-hydroxy-3-hexanone aldolase activity","type":"related"},{"name":"4-hydroxy-3-hexanone propanal-lyase (propanal-forming)","type":"related"},{"name":"4-hydroxy-3-hexanone propanal-lyase activity","type":"related"}],"termid":"GO:0050217"}


id: GO:0071854
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways that result in the breakdown of macromolecules that form part of a cell wall, and contributes to the breakdown of the fungal-type cell wall.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall macromolecule catabolic process involved in cell wall disassembly","termid":"GO:0070910"},{"relation_name":"part_of","term_name":"fungal-type cell wall disassembly","termid":"GO:0071853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0071554"],"is_obsolete":false,"name":"cell wall macromolecule catabolic process involved in fungal-type cell wall disassembly","termid":"GO:0071854"}


id: GO:0031026
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex that possesses glutamate synthase activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"glutamate synthase complex","termid":"GO:0031026"}


id: GO:0045552
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-3,4-leucopelargonidin + NADP+ = (+)-dihydrokaempferol + NADPH + H+.","definition_xrefs":["EC:1.1.1.219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"dihydrokaempferol 4-reductase activity","secondary_identifiers":["RHEA:23016","MetaCyc:DIHYDROKAEMPFEROL-4-REDUCTASE-RXN"],"synonyms":[{"name":"NADPH-dihydromyricetin reductase activity","type":"related"},{"name":"cis-3,4-leucopelargonidin:NADP+ 4-oxidoreductase activity","type":"related"},{"name":"dihydroflavanol 4-reductase activity","type":"related"},{"name":"dihydroflavonol 4-reductase activity","type":"related"},{"name":"dihydromyricetin reductase activity","type":"related"},{"name":"dihydroquercetin reductase activity","type":"related"}],"termid":"GO:0045552"}


id: PBO:0084730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane transporter; 2-oxodicarboxylate transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for lysine and glutamate biosynthesis and lysine catabolism; suppresses, in multicopy, an fmc1 null mutation; ODC1 has a paralog, ODC2, that arose from the whole genome duplication","termid":"PBO:0084730"}


id: PBO:0005104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar SNARE Vam7 (predicted)","termid":"PBO:0005104"}


id: GO:0000914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a structure composed of actin, myosin, and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles).","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assembly of actomyosin apparatus involved in mitotic cytokinesis","termid":"GO:1902407"},{"relation_name":"part_of","term_name":"cytokinesis by cell plate formation","termid":"GO:0000911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0000281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0000281","GO:0007049","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"phragmoplast assembly","synonyms":[{"name":"phragmoplast formation","type":"related"}],"termid":"GO:0000914"}


id: GO:0062095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of an endoplasmic reticulum membrane to a peroxisome via molecular tethers that physically bridge the two membranes and attach them to each other.","definition_xrefs":["PMID:28463579"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxisome localization","termid":"GO:0060151"},{"relation_name":"is_a","term_name":"organelle localization by membrane tethering","termid":"GO:0140056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0140056"}],"interesting_parent_ids":["GO:0140056","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum-peroxisome tethering","termid":"GO:0062095"}


id: GO:0018173
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of peptidyl-1-thioglycine from other compounds, including peptidyl-glycine.","definition_xrefs":["RESID:AA0265","PMID:10660523"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-glycine modification","termid":"GO:0018201"},{"relation_name":"is_a","term_name":"cellular modified amino acid biosynthetic process","termid":"GO:0042398"},{"relation_name":"is_a","term_name":"cellular biosynthetic process","termid":"GO:0044249"},{"relation_name":"part_of","term_name":"nickel-tetrapyrrole coenzyme metabolic process","termid":"GO:0015011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine","synonyms":[{"name":"peptidyl-1-thioglycine anabolism from peptidyl-glycine","type":"exact"},{"name":"peptidyl-1-thioglycine formation from peptidyl-glycine","type":"exact"},{"name":"peptidyl-1-thioglycine synthesis from peptidyl-glycine","type":"exact"}],"termid":"GO:0018173"}


id: GO:0106191
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of inorganic cations linked to oxidoreductase reactions.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on inogranic cations linked to oxidoreductase reactions (obsolete GO:0106191)","secondary_identifiers":["EC:7.2.1.-"],"termid":"GO:0106191"}


id: PBO:0027066
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RNA_metabolic_process","termid":"PBO:0027066"}


id: PBO:0069414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 675, pseudogene","termid":"PBO:0069414"}


id: GO:0002786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of antibacterial peptide production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antimicrobial peptide production","termid":"GO:0002784"},{"relation_name":"regulates","term_name":"antibacterial peptide production","termid":"GO:0002778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of antibacterial peptide production","termid":"GO:0002786"}


id: PBO:0054079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1429","termid":"PBO:0054079"}


id: SO:0000026
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","direct_ancestors":[{"relation_name":"is_a","term_name":"RNA_motif","termid":"SO:0000715"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA_junction_loop","synonyms":[{"name":"RNA junction loop","type":"exact"}],"termid":"SO:0000026"}


id: PBO:0054167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1538","termid":"PBO:0054167"}


id: GO:0050743
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a protein-FMN linkage via 1'-(8alpha-FMN)-L-histidine.","definition_xrefs":["RESID:AA0352","PMID:8611516"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-FMN linkage via 1'-(8alpha-FMN)-L-histidine (obsolete GO:0050743)","termid":"GO:0050743"}


id: PBO:0053931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1230","termid":"PBO:0053931"}


id: GO:0008885
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gamma-L-glutamyl-L-cysteinyl-glycine + spermidine + ATP = N1-(gamma-L-glutamyl-L-cysteinyl-glycyl)-spermidine + ADP + phosphate.","definition_xrefs":["EC:6.3.1.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-ammonia (or amide) ligase activity","termid":"GO:0016880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"glutathionylspermidine synthase activity","secondary_identifiers":["RHEA:21272","MetaCyc:GSPSYN-RXN"],"synonyms":[{"name":"GSP synthetase activity","type":"related"},{"name":"gamma-L-glutamyl-L-cysteinyl-glycine:spermidine ligase (ADP-forming) [spermidine is numbered so that atom N-1 is in the amino group of the aminopropyl part of the molecule]","type":"related"},{"name":"gamma-L-glutamyl-L-cysteinyl-glycine:spermidine ligase (ADP-forming) activity","type":"related"},{"name":"glutathione:spermidine ligase (ADP-forming) activity","type":"related"},{"name":"glutathionylspermidine synthetase activity","type":"related"}],"termid":"GO:0008885"}


id: PBO:0081316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 100","termid":"PBO:0081316"}


id: PBO:0041089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bombesin receptor subtype 3","termid":"PBO:0041089"}


id: PBO:0029621
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_phosphorylation_during_cellular_response_to_hydroxyurea","termid":"PBO:0029621"}


id: GO:0022604
data:
  {"annotated_genes":["SJAG_03486","SJAG_02022","SJAG_00028","SJAG_03637","SJAG_00514","SJAG_03705","SJAG_02838","SJAG_00596","SJAG_01799","SJAG_00333","SJAG_04724","SJAG_02169","SJAG_00236","SJAG_00661","SJAG_00610","SJAG_03581","SJAG_04509","SJAG_00216","SJAG_04461","SJAG_00244","SJAG_02536","SJAG_04322","SJAG_02392","SJAG_04666","SJAG_01456","SJAG_00845","SJAG_04522"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90624,85896,91904],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"},{"annotations":[114093,84089,95828,102978,106908,99605,112664],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051523"},{"annotations":[100653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061246"},{"annotations":[86757],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051517"},{"annotations":[103750,112768],"is_not":false,"rel_names":["positively_regulates","regulates","is_a"],"summary":null,"term":"GO:2000784"},{"annotations":[99822,89784,101480,96263],"is_not":false,"rel_names":["regulates","positively_regulates","is_a"],"summary":null,"term":"GO:2000247"},{"annotations":[99823],"is_not":false,"rel_names":["positively_regulates","is_a","regulates"],"summary":null,"term":"GO:0061361"},{"annotations":[111218],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051516"},{"annotations":[115562,115563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008360"},{"annotations":[101483,87163,91721,96266,100657,90630,109217,114971],"is_not":false,"rel_names":["is_a","regulates"],"summary":null,"term":"GO:2000100"},{"annotations":[98957,83934,88450],"is_not":false,"rel_names":["is_a","regulates"],"summary":null,"term":"GO:2000769"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process in which the shape of a cell is generated and organized.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"regulates","term_name":"cell morphogenesis","termid":"GO:0000902"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00028":null,"SJAG_00216":null,"SJAG_00236":null,"SJAG_00244":null,"SJAG_00333":null,"SJAG_00514":null,"SJAG_00596":null,"SJAG_00610":null,"SJAG_00661":null,"SJAG_00845":null,"SJAG_01456":null,"SJAG_01799":null,"SJAG_02022":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_02536":null,"SJAG_02838":null,"SJAG_03486":null,"SJAG_03581":null,"SJAG_03637":null,"SJAG_03705":null,"SJAG_04322":null,"SJAG_04461":null,"SJAG_04509":null,"SJAG_04522":null,"SJAG_04666":null,"SJAG_04724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell morphogenesis","references_by_uniquename":{"GO_REF:0000107":null,"PMID:30664646":null},"synonyms":[{"name":"negative regulation of cell shape and cell size","type":"related"},{"name":"positive regulation of cell shape and cell size","type":"related"},{"name":"regulation of cell shape and cell size","type":"related"}],"termid":"GO:0022604","terms_by_termid":{"GO:0008360":null,"GO:0051516":null,"GO:0051517":null,"GO:0051519":null,"GO:0051523":null,"GO:0061246":null,"GO:0061361":null,"GO:2000100":null,"GO:2000247":null,"GO:2000769":null,"GO:2000784":null}}


id: PBO:0002592
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraganglioma","termid":"PBO:0002592"}


id: PBO:0062937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P4HA2 antisense RNA 1","termid":"PBO:0062937"}


id: GO:0009496
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 H+[side 1] + 2 oxidized plastocyanin + plastoquinol-1 = 2 H+[side 2] + 2 reduced plastocyanin + plastoquinone. This reaction involves the concomitant transfer of 2 H+ ions across a membrane.","definition_xrefs":["RHEA:22148"],"direct_ancestors":[{"relation_name":"is_a","term_name":"electron transfer activity","termid":"GO:0009055"},{"relation_name":"is_a","term_name":"oxidoreduction-driven active transmembrane transporter activity","termid":"GO:0015453"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor","termid":"GO:0052880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"plastoquinol--plastocyanin reductase activity","secondary_identifiers":["EC:7.1.1.6","KEGG_REACTION:R03817","MetaCyc:PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN"],"synonyms":[{"name":"cytochrome b6f","type":"narrow"},{"name":"cytochrome b6f complex activity","type":"related"},{"name":"plastoquinol-plastocyanin reductase activity","type":"related"},{"name":"plastoquinol/plastocyanin oxidoreductase activity","type":"related"},{"name":"plastoquinol:oxidized-plastocyanin oxidoreductase activity","type":"related"}],"termid":"GO:0009496"}


id: PR:Q9C0X0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC29A3.21 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C0X0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C29A3.21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.21","synonyms":[{"name":"Spom972h-SPBC29A3.21","type":"exact"}],"termid":"PR:Q9C0X0"}


id: PBO:0087216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine transporter of the mitochondrial inner membrane; member of the mitochondrial carrier family; required for biotin biosynthesis and respiratory growth","termid":"PBO:0087216"}


id: GO:0009130
data:
  {"annotated_genes":["SJAG_04354","SJAG_00533","SJAG_03708","SJAG_00694","SJAG_00197","SJAG_04713","SJAG_03771","SJAG_04709","SJAG_00444","SJAG_03164","SJAG_00964","SJAG_04627","SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108072,85483,94579,112906,89453],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044205"},{"annotations":[67046],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009224"},{"annotations":[104516,85409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[95073,104517],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"},{"annotations":[87994,84487,83503,88999,111083],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate biosynthetic process","termid":"GO:0009124"},{"relation_name":"is_a","term_name":"pyrimidine nucleoside monophosphate metabolic process","termid":"GO:0009129"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00197":null,"SJAG_00444":null,"SJAG_00533":null,"SJAG_00694":null,"SJAG_00964":null,"SJAG_03164":null,"SJAG_03708":null,"SJAG_03771":null,"SJAG_04354":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04709":null,"SJAG_04713":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pyrimidine nucleoside monophosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"pyrimidine nucleoside monophosphate anabolism","type":"exact"},{"name":"pyrimidine nucleoside monophosphate biosynthesis","type":"exact"},{"name":"pyrimidine nucleoside monophosphate formation","type":"exact"},{"name":"pyrimidine nucleoside monophosphate synthesis","type":"exact"}],"termid":"GO:0009130","terms_by_termid":{"GO:0006226":null,"GO:0006231":null,"GO:0009224":null,"GO:0044205":null,"GO:0044206":null}}


id: PBO:0072097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 28","termid":"PBO:0072097"}


id: SO:0000496
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"7 nucleotide recombination site (e.g. CACTGTG), part of a 5' D-recombination signal sequence (SO:0000556) of an immunoglobulin/T-cell receptor gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"heptamer_of_recombination_feature_of_vertebrate_immune_system_gene","termid":"SO:0000561"},{"relation_name":"part_of","term_name":"five_prime_D_recombination_signal_sequence","termid":"SO:0000556"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_D_heptamer","synonyms":[{"name":"5'D-HEPTAMER","type":"exact"},{"name":"five prime D heptamer","type":"exact"}],"termid":"SO:0000496"}


id: GO:0031703
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 2 angiotensin receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angiotensin receptor binding","termid":"GO:0031701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type 2 angiotensin receptor binding","synonyms":[{"name":"AT2 receptor binding","type":"exact"},{"name":"type 2 angiotensin receptor ligand","type":"narrow"}],"termid":"GO:0031703"}


id: PBO:0057498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 616","termid":"PBO:0057498"}


id: GO:0170035
data:
  {"annotated_genes":["SJAG_02901","SJAG_00830","SJAG_00493","SJAG_02450","SJAG_00881","SJAG_03861","SJAG_00714","SJAG_03641","SJAG_01903","SJAG_03398","SJAG_00937","SJAG_03290","SJAG_00495","SJAG_01271","SJAG_02235","SJAG_03434","SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102895],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019544"},{"annotations":[93420,109369],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019547"},{"annotations":[93421,109370,102896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010121"},{"annotations":[102112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006530"},{"annotations":[107972],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006533"},{"annotations":[78475,87728],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006538"},{"annotations":[93939],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006546"},{"annotations":[109195,84705,83465,92469],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019464"},{"annotations":[107384],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"},{"annotations":[103252,114192],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010133"},{"annotations":[99900,90250],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006567"},{"annotations":[102902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006572"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an L-amino acid.","definition_xrefs":["GOC:edw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00493":null,"SJAG_00495":null,"SJAG_00714":null,"SJAG_00830":null,"SJAG_00881":null,"SJAG_00937":null,"SJAG_01271":null,"SJAG_01903":null,"SJAG_02235":null,"SJAG_02450":null,"SJAG_02901":null,"SJAG_03290":null,"SJAG_03398":null,"SJAG_03434":null,"SJAG_03641":null,"SJAG_03861":null,"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"L-amino acid catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"L-amino acid breakdown","type":"exact"},{"name":"L-amino acid catabolism","type":"exact"},{"name":"L-amino acid degradation","type":"exact"}],"termid":"GO:0170035","terms_by_termid":{"GO:0006530":null,"GO:0006533":null,"GO:0006538":null,"GO:0006546":null,"GO:0006567":null,"GO:0006572":null,"GO:0010121":null,"GO:0010133":null,"GO:0019464":null,"GO:0019544":null,"GO:0019547":null,"GO:0042853":null}}


id: PBO:0090304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperone activator Sti1","termid":"PBO:0090304"}


id: GO:0140456
data:
  {"annotated_genes":["SJAG_00794"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91360],"is_not":false,"summary":null,"term":"GO:0140456"}]},"cv_name":"biological_process","definition":"The release of duplicated meiotic spindle pole bodies (SPBs).","definition_xrefs":["PMID:31532702"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle pole body separation","termid":"GO:0110100"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00794":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0000226","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"initial meiotic spindle pole body separation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"initial spindle pole body separation involved in meiosis I","type":"exact"},{"name":"meiotic spindle pole body duplication","type":"exact"}],"termid":"GO:0140456","terms_by_termid":{"GO:0140456":null}}


id: GO:0071891
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An N-terminal peptidyl-proline dimethylation process that contributes to translation.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete N-terminal peptidyl-proline dimethylation involved in translation (obsolete GO:0071891)","termid":"GO:0071891"}


id: GO:0047964
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycolate + NAD+ = glyoxylate + NADH.","definition_xrefs":["RHEA:18229"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glyoxylate reductase activity","termid":"GO:0106345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"glyoxylate reductase (NADH) activity","secondary_identifiers":["EC:1.1.1.26","MetaCyc:GLYCOLATE-REDUCTASE-RXN"],"synonyms":[{"name":"NADH-dependent glyoxylate reductase activity","type":"related"},{"name":"glycolate reductase activity","type":"related"},{"name":"glyoxylic acid reductase activity","type":"related"}],"termid":"GO:0047964"}


id: GO:0002103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with four genes, in this order, are produced in the chloroplasts of vascular plants. Note that the use of the word tetracistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0042254","GO:0010467","GO:0044085"],"is_obsolete":false,"name":"endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)","termid":"GO:0002103"}


id: GO:0071985
data:
  {"annotated_genes":["SJAG_03892","SJAG_04349","SJAG_04643","SJAG_04024","SJAG_03783","SJAG_01281","SJAG_04070","SJAG_02912","SJAG_04936","SJAG_00821","SJAG_01586","SJAG_05207","SJAG_07012","SJAG_00416","SJAG_03250","SJAG_02234","SJAG_01981","SJAG_00900","SJAG_02584","SJAG_03511","SJAG_02117","SJAG_03756","SJAG_01686","SJAG_01242","SJAG_04912","SJAG_03891","SJAG_04822","SJAG_05303","SJAG_02349","SJAG_04047","SJAG_04489"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92016],"is_not":false,"summary":null,"term":"GO:0071985"},{"annotations":[113710],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032509"},{"annotations":[99256,94771,84646,100246,106355,99851,111043,87661,103260,108730,94949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032511"},{"annotations":[92023,88024,112572,105515,83992,84162,87527,110875,88311,94036,105935,106786,96983,102682,101094,107621,103505,86584,87662],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043328"}]},"cv_name":"biological_process","definition":"A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded.","definition_xrefs":["GOC:mah","PMID:17603537"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle-mediated transport","termid":"GO:0016192"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00416":null,"SJAG_00821":null,"SJAG_00900":null,"SJAG_01242":null,"SJAG_01281":null,"SJAG_01586":null,"SJAG_01686":null,"SJAG_01981":null,"SJAG_02117":null,"SJAG_02234":null,"SJAG_02349":null,"SJAG_02584":null,"SJAG_02912":null,"SJAG_03250":null,"SJAG_03511":null,"SJAG_03756":null,"SJAG_03783":null,"SJAG_03891":null,"SJAG_03892":null,"SJAG_04024":null,"SJAG_04047":null,"SJAG_04070":null,"SJAG_04349":null,"SJAG_04489":null,"SJAG_04643":null,"SJAG_04822":null,"SJAG_04912":null,"SJAG_04936":null,"SJAG_05207":null,"SJAG_05303":null,"SJAG_07012":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"multivesicular body sorting pathway","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071985","terms_by_termid":{"GO:0032509":null,"GO:0032511":null,"GO:0043328":null,"GO:0071985":null}}


id: GO:0035364
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of thymine, 5-methyluracil, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GO:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase transport","termid":"GO:0015855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"thymine transport","synonyms":[{"name":"5-methyluracil transport","type":"exact"},{"name":"thymine transmembrane transport","type":"exact"}],"termid":"GO:0035364"}


id: GO:1901699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus.","definition_xrefs":["GOC:TermGenie","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to nitrogen compound","synonyms":[{"name":"cellular response to nitrogen molecular entity","type":"exact"}],"termid":"GO:1901699"}


id: GO:0034852
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4,4-dimethyl-3-oxopentanal + H2O = 4,4-dimethyl-3-oxopentanoate + 3 H+ + 2 e-.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 4,4-dimethyl-3-oxopentanal dehydrogenase activity (obsolete GO:0034852)","termid":"GO:0034852"}


id: PBO:0084725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane protein; required for proteolytic processing of Cox2p and its assembly into cytochrome c oxidase","termid":"PBO:0084725"}


id: PBO:0077401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 134","termid":"PBO:0077401"}


id: GO:1905663
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of telomerase RNA reverse transcriptase activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","GOC:BHF_telomere","GOC:nc","PMID:22633954","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of telomerase RNA reverse transcriptase activity (obsolete GO:1905663)","synonyms":[{"name":"activation of telomerase RNA reverse transcriptase activity","type":"narrow"},{"name":"activation of telomerase, catalyst","type":"narrow"},{"name":"positive regulation of telomerase, catalyst","type":"exact"},{"name":"up regulation of telomerase RNA reverse transcriptase activity","type":"exact"},{"name":"up regulation of telomerase, catalyst","type":"exact"},{"name":"up-regulation of telomerase RNA reverse transcriptase activity","type":"exact"},{"name":"up-regulation of telomerase, catalyst","type":"exact"},{"name":"upregulation of telomerase RNA reverse transcriptase activity","type":"exact"},{"name":"upregulation of telomerase, catalyst","type":"exact"}],"termid":"GO:1905663"}


id: GO:0032958
data:
  {"annotated_genes":["SJAG_00321","SJAG_01148","SJAG_03409","SJAG_02321","SJAG_00244"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89416,94876,111213,113192,115005],"is_not":false,"summary":null,"term":"GO:0032958"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol phosphate metabolic process","termid":"GO:0043647"},{"relation_name":"is_a","term_name":"polyol biosynthetic process","termid":"GO:0046173"},{"relation_name":"is_a","term_name":"organophosphate biosynthetic process","termid":"GO:0090407"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00321":null,"SJAG_01148":null,"SJAG_02321":null,"SJAG_03409":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"inositol phosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"inositol phosphate anabolism","type":"exact"},{"name":"inositol phosphate biosynthesis","type":"exact"},{"name":"inositol phosphate formation","type":"exact"},{"name":"inositol phosphate synthesis","type":"exact"},{"name":"myo-inositol phosphate biosynthetic process","type":"narrow"}],"termid":"GO:0032958","terms_by_termid":{"GO:0032958":null}}


id: GO:0061084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of protein refolding. Protein refolding is the process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein refolding","termid":"GO:0061083"},{"relation_name":"is_a","term_name":"negative regulation of protein folding","termid":"GO:1903333"},{"relation_name":"negatively_regulates","term_name":"protein refolding","termid":"GO:0042026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006457"},{"rel_name":"negatively_regulates","termid":"GO:0006457"}],"interesting_parent_ids":["GO:0008150","GO:0006457"],"is_obsolete":false,"name":"negative regulation of protein refolding","termid":"GO:0061084"}


id: GO:0019277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-sugar biosynthetic process","termid":"GO:0009226"},{"relation_name":"is_a","term_name":"UDP-N-acetylgalactosamine metabolic process","termid":"GO:0019276"},{"relation_name":"is_a","term_name":"amino sugar biosynthetic process","termid":"GO:0046349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"UDP-N-acetylgalactosamine biosynthetic process","synonyms":[{"name":"UDP-N-acetylgalactosamine anabolism","type":"exact"},{"name":"UDP-N-acetylgalactosamine biosynthesis","type":"exact"},{"name":"UDP-N-acetylgalactosamine formation","type":"exact"},{"name":"UDP-N-acetylgalactosamine synthesis","type":"exact"}],"termid":"GO:0019277"}


id: _global:term_tracker_item
data:
  {"annotation_feature_type":"gene","cv_name":"external","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"term_tracker_item","secondary_identifiers":["IAO:0000233"],"termid":"_global:term_tracker_item"}


id: PR:O14341
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC2F12.10 gene.","definition_xrefs":["UniProtKB:O14341","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L35, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2F12.10","synonyms":[{"name":"Spom972h-SPBC2F12.10","type":"exact"}],"termid":"PR:O14341"}


id: PBO:0075832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"somatostatin","termid":"PBO:0075832"}


id: GO:0004728
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Conveys a signal from an upstream receptor or intracellular signal transducer by catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.","definition_xrefs":["EC:3.1.3.48"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity (obsolete GO:0004728)","synonyms":[{"name":"receptor signaling protein tyrosine phosphatase activity","type":"exact"},{"name":"receptor signalling protein tyrosine phosphatase activity","type":"exact"}],"termid":"GO:0004728"}


id: PBO:0047505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fer-1 like family member 6","termid":"PBO:0047505"}


id: PBO:0052735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 27","termid":"PBO:0052735"}


id: GO:1904768
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to all-trans-retinol.","definition_xrefs":["PMID:19828452","GO_REF:0000067","GOC:kmv","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinol binding","termid":"GO:0019841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0008289"],"is_obsolete":false,"name":"all-trans-retinol binding","termid":"GO:1904768"}


id: PBO:0071838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 33","termid":"PBO:0071838"}


id: GO:0015223
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the directed transport of vitamins or cofactors into, out of or within a cell, or between cells.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete vitamin or cofactor transporter activity (obsolete GO:0015223)","synonyms":[{"name":"vitamin or cofactor transporter activity","type":"exact"},{"name":"vitamin/cofactor transporter activity","type":"exact"}],"termid":"GO:0015223"}


id: PBO:0060398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD4 binding protein 2 like 2","termid":"PBO:0060398"}


id: GO:0051681
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 6-alpha-maltosylglucose, also known as isopanose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide catabolic process","termid":"GO:0009313"},{"relation_name":"is_a","term_name":"6-alpha-maltosylglucose metabolic process","termid":"GO:0051679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"6-alpha-maltosylglucose catabolic process","synonyms":[{"name":"isopanose catabolic process","type":"exact"},{"name":"isopanose catabolism","type":"exact"}],"termid":"GO:0051681"}


id: GO:0007458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic furrow is a dorsoventral indentation which sweeps anteriorly across the eye disc. Ommatidia begin to form along the furrow, resulting in a graded series of ommatidial development across the anterior/posterior axis of the disc.","definition_xrefs":["PMID:3076112","PMID:3937883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"compound eye morphogenesis","termid":"GO:0001745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"progression of morphogenetic furrow involved in compound eye morphogenesis","synonyms":[{"name":"progression of morphogenetic furrow during compound eye morphogenesis","type":"related"}],"termid":"GO:0007458"}


id: PBO:0108699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGEF","termid":"PBO:0108699"}


id: PBO:0063915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta","termid":"PBO:0063915"}


id: GO:0043174
data:
  {"annotated_genes":["SJAG_00134","SJAG_04264","SJAG_01781","SJAG_02179","SJAG_01070","SJAG_03096","SJAG_01859","SJAG_03881","SJAG_06634","SJAG_05029"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94668,94669],"is_not":false,"summary":null,"term":"GO:0043174"},{"annotations":[113026],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"},{"annotations":[104640],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006190"},{"annotations":[89576,85809,112015,89799],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006166"},{"annotations":[109984,93811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043097"}]},"cv_name":"biological_process","definition":"Any process which produces a nucleotide, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose (a deoxyribonucleotide), from derivatives of it without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside biosynthetic process","termid":"GO:0009163"},{"relation_name":"is_a","term_name":"cellular metabolic compound salvage","termid":"GO:0043094"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00134":null,"SJAG_01070":null,"SJAG_01781":null,"SJAG_01859":null,"SJAG_02179":null,"SJAG_03096":null,"SJAG_03881":null,"SJAG_04264":null,"SJAG_05029":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"nucleoside salvage","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043174","terms_by_termid":{"GO:0006166":null,"GO:0006169":null,"GO:0006190":null,"GO:0043097":null,"GO:0043174":null}}


id: FYPO:0003650
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to glucose starvation is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein level during cellular response to glucose starvation","synonyms":[{"name":"decreased protein accumulation during cellular response to glucose starvation","type":"related"},{"name":"decreased protein level during cellular response to glucose depletion","type":"exact"},{"name":"decreased protein level during cellular response to glucose deprivation","type":"exact"},{"name":"decreased protein level during cellular response to glucose limitation","type":"related"},{"name":"decreased protein level during cellular response to glucose starvation during mitotic cell cycle","type":"related"},{"name":"decreased protein level during cellular response to glucose starvation during vegetative growth","type":"exact"},{"name":"decreased protein level during glucose starvation","type":"exact"},{"name":"reduced protein level during cellular response to glucose starvation","type":"exact"}],"termid":"FYPO:0003650"}


id: PR:Q9UT16
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP synthase mitochondrial F1 complex assembly factor 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00598","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein atp12, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9.12c","secondary_identifiers":["UniProtKB:Q9UT16"],"synonyms":[{"name":"Spom972h-ATPAF2","type":"exact"}],"termid":"PR:Q9UT16"}


id: GO:0031986
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A leucoplast in which protein is stored.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leucoplast","termid":"GO:0009516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"proteinoplast","secondary_identifiers":["Wikipedia:Proteinoplast"],"termid":"GO:0031986"}


id: GO:0002203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydrolysis of a peptide bond or bonds within a protein by cytosolic resident proteases during antigen processing and presentation.","definition_xrefs":["ISBN:0781735149","PMID:15224092","GOC:add","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteolysis associated with antigen processing and presentation","termid":"GO:0002496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"proteolysis by cytosolic proteases associated with antigen processing and presentation","termid":"GO:0002203"}


id: PBO:0050399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein C like 4","termid":"PBO:0050399"}


id: GO:0015057
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A G protein-coupled receptor activity that is activated by cleavage by thrombin, which exposes a tethered ligand corresponding to the new N-terminus, which binds to the receptor and activates it.","definition_xrefs":["PMID:20423334","GOC:ai","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteinase-activated receptor activity","termid":"GO:0001648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"thrombin-activated receptor activity","secondary_identifiers":["GO:0010655"],"synonyms":[{"name":"thrombin receptor activity","type":"exact"},{"name":"thrombin receptor activity, G-protein coupled","type":"exact"}],"termid":"GO:0015057"}


id: PBO:0062538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 9 subfamily G member 3 pseudogene","termid":"PBO:0062538"}


id: MOD:00111
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-farnesyl-L-cysteine.","definition_xrefs":["RESID:AA0102","PubMed:15609361","PubMed:1872463","DeltaMass:293","PubMed:1409665","PubMed:2684976","Unimod:44#C","OMSSA:42"],"direct_ancestors":[{"relation_name":"is_a","term_name":"farnesylated residue","termid":"MOD:00437"},{"relation_name":"is_a","term_name":"isoprenylated cysteine","termid":"MOD:01110"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-farnesyl-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid","type":"exact"},{"name":"2-amino-3-(3,7,11-trimethyl-2,6,10-dodecatrienylthio)propanoic acid","type":"exact"},{"name":"Farnesyl","type":"related"},{"name":"Farnesylation","type":"related"},{"name":"LIPID S-farnesyl cysteine","type":"exact"},{"name":"S-farnesyl Cystenyl","type":"exact"},{"name":"S-farnesyl-L-cysteine","type":"exact"},{"name":"SFarnCys","type":"exact"},{"name":"farnesylationc","type":"exact"}],"termid":"MOD:00111"}


id: PBO:0056257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MALL pseudogene 2","termid":"PBO:0056257"}


id: GO:0090218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of lipid kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a simple or complex lipid.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of kinase activity","termid":"GO:0033674"},{"relation_name":"is_a","term_name":"regulation of lipid kinase activity","termid":"GO:0043550"},{"relation_name":"is_a","term_name":"positive regulation of lipid metabolic process","termid":"GO:0045834"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of lipid kinase activity","termid":"GO:0090218"}


id: GO:1902898
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving fatty acid methyl ester.","definition_xrefs":["GOC:TermGenie","GO_REF:0000068","GOC:mengo_curators","PMID:16570218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid derivative metabolic process","termid":"GO:1901568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"fatty acid methyl ester metabolic process","synonyms":[{"name":"FAME metabolic process","type":"exact"},{"name":"fatty acid methyl ester metabolism","type":"exact"}],"termid":"GO:1902898"}


id: PBO:0049726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAUS augmin like complex subunit 7","termid":"PBO:0049726"}


id: GO:0062246
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by an exocytic vesicle.","definition_xrefs":["PMID:27384577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport vesicle lumen","termid":"GO:0098566"},{"relation_name":"part_of","term_name":"exocytic vesicle","termid":"GO:0070382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"exocytic vesicle lumen","termid":"GO:0062246"}


id: PBO:0113260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal matrix protein that regulates lysine biosynthesis; localization to peroxisomes upon lysine deprivation is dependent on targeting factor Pex5p and lysine biosynthesis enzyme Lys1p; affects abundance of Lys1p and the lysine biosynthesis pathway","termid":"PBO:0113260"}


id: PBO:0031094
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sterile","termid":"PBO:0031094"}


id: GO:1901281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of fructoselysine.","definition_xrefs":["GOC:yaf","UniPathway:UPA00784","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fructosamine catabolic process","termid":"GO:0030392"},{"relation_name":"is_a","term_name":"fructoselysine metabolic process","termid":"GO:0030393"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"fructoselysine catabolic process","synonyms":[{"name":"fructosyllysine breakdown","type":"exact"},{"name":"fructosyllysine catabolic process","type":"exact"},{"name":"fructosyllysine catabolism","type":"exact"},{"name":"fructosyllysine degradation","type":"exact"}],"termid":"GO:1901281"}


id: PBO:0073058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDAD1 antisense RNA 1","termid":"PBO:0073058"}


id: FYPO:0005824
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the permeability of the plasma membrane to one or more substances is greater than normal.","definition_xrefs":["PomBase:mah","PMID:27886462"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal plasma membrane morphology during vegetative growth","termid":"FYPO:0000364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased plasma membrane permeability","synonyms":[{"name":"increased plasma membrane permeability during mitotic cell cycle","type":"related"},{"name":"increased plasma membrane permeability during vegetative growth","type":"exact"}],"termid":"FYPO:0005824"}


id: FYPO:0005615
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, is abnormal during a cellular response to bleomycin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein phosphorylation during vegetative growth","termid":"FYPO:0000775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0002494","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein phosphorylation during cellular response to bleomycin","synonyms":[{"name":"abnormal protein phosphorylation during cellular response to bleomycin during mitotic cell cycle","type":"related"},{"name":"abnormal protein phosphorylation during cellular response to bleomycin during vegetative growth","type":"exact"}],"termid":"FYPO:0005615"}


id: PBO:0088950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Atg12 conjugating enzyme Atg10","termid":"PBO:0088950"}


id: PBO:0045880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 delta pseudogene 4","termid":"PBO:0045880"}


id: GO:0045040
data:
  {"annotated_genes":["SJAG_03502","SJAG_03416","SJAG_02797","SJAG_01780","SJAG_02355","SJAG_02361","SJAG_00569","SJAG_01951","SJAG_02034"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86402,86934,94315,94665,103706,106191,106544,106555,107951],"is_not":false,"summary":null,"term":"GO:0045040"}]},"cv_name":"biological_process","definition":"The process comprising the insertion of proteins from outside the organelle into the mitochondrial outer membrane, mediated by large outer membrane translocase complexes.","definition_xrefs":["GOC:vw","PMID:18672008","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial transport","termid":"GO:0006839"},{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"},{"relation_name":"is_a","term_name":"outer mitochondrial membrane organization","termid":"GO:0007008"},{"relation_name":"is_a","term_name":"establishment of protein localization to mitochondrial membrane","termid":"GO:0090151"},{"relation_name":"part_of","term_name":"protein targeting to mitochondrion","termid":"GO:0006626"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00569":null,"SJAG_01780":null,"SJAG_01951":null,"SJAG_02034":null,"SJAG_02355":null,"SJAG_02361":null,"SJAG_02797":null,"SJAG_03416":null,"SJAG_03502":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0007005"},{"rel_name":"part_of","termid":"GO:0006605"}],"interesting_parent_ids":["GO:0006810","GO:0061024","GO:0051179","GO:0008150","GO:0007005","GO:0006605"],"is_obsolete":false,"name":"protein insertion into mitochondrial outer membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial outer membrane protein import","type":"exact"},{"name":"protein import into mitochondrial outer membrane","type":"exact"},{"name":"protein transport into mitochondrial outer membrane","type":"exact"}],"termid":"GO:0045040","terms_by_termid":{"GO:0045040":null}}


id: PBO:0083152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF SEC6/YIL068C","termid":"PBO:0083152"}


id: SO:0002119
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A physical quality which inheres to the allele by virtue of the number instances of the allele within a population. This is the relative frequency of the allele at a given locus in a population.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variant_frequency","termid":"SO:0001763"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allelic_frequency","secondary_identifiers":["wikipedia:Allele_frequency"],"termid":"SO:0002119"}


id: FYPO:0007794
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell during a cellular response to oxidative stress is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PMID:10428959","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA absent from cell during vegetative growth","termid":"FYPO:0003161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"RNA absent from cell during cellular response to oxidative stress","synonyms":[{"name":"RNA absent from cell during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"RNA absent from cell during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"transcripts absent from cell during cellular response to oxidative stress","type":"exact"},{"name":"undetectable RNA level during cellular response to oxidative stress","type":"exact"}],"termid":"FYPO:0007794"}


id: PBO:0025461
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbohydrate metabolism disorders","termid":"PBO:0025461"}


id: GO:0042750
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism enters and maintains a period of dormancy in which to pass the winter. It is characterized by narcosis and by sharp reduction in body temperature and metabolic activity and by a depression of vital signs.","definition_xrefs":["GOC:jl","PMID:1945046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dormancy process","termid":"GO:0022611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hibernation","secondary_identifiers":["Wikipedia:Hibernation"],"termid":"GO:0042750"}


id: SO:0001239
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tanscription start site that is not the most frequently used for transcription of a gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"TSS","termid":"SO:0000315"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minor_TSS","synonyms":[{"name":"minor TSS","type":"exact"}],"termid":"SO:0001239"}


id: GO:1901767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving carbapenem.","definition_xrefs":["GOC:yaf","GOC:TermGenie","PMID:9402024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-lactam antibiotic metabolic process","termid":"GO:0030653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"carbapenem metabolic process","synonyms":[{"name":"carbapenem metabolism","type":"exact"}],"termid":"GO:1901767"}


id: PBO:0082902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cys2His2 zinc-finger transcriptional repressor; involved in alkaline responsive gene repression as part of adaptation to alkaline conditions; involved in cell wall assembly; required for alkaline pH-stimulated haploid invasive growth and sporulation; activated by alkaline-dependent proteolytic processing which results in removal of the C-terminal tail; similar to A. nidulans PacC","termid":"PBO:0082902"}


id: GO:0006369
data:
  {"annotated_genes":["SJAG_04006","SJAG_02037","SJAG_04942","SJAG_03126","SJAG_02156","SJAG_02242","SJAG_03624","SJAG_01713","SJAG_03689","SJAG_03179","SJAG_03923","SJAG_04527"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72530,88859,93264,94216,95971,103834,103931,112165],"is_not":false,"summary":null,"term":"GO:0006369"},{"annotations":[108119],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1904595"},{"annotations":[93325,98273,103598],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030847"}]},"cv_name":"biological_process","definition":"A transcription termination process that completes the production of a primary RNA polymerase II transcript.","definition_xrefs":["GOC:mah","PMID:27371117","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription termination","termid":"GO:0006353"},{"relation_name":"part_of","term_name":"transcription by RNA polymerase II","termid":"GO:0006366"}],"gene_count":12,"genes_by_uniquename":{"SJAG_01713":null,"SJAG_02037":null,"SJAG_02156":null,"SJAG_02242":null,"SJAG_03126":null,"SJAG_03179":null,"SJAG_03624":null,"SJAG_03689":null,"SJAG_03923":null,"SJAG_04006":null,"SJAG_04527":null,"SJAG_04942":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"termination of RNA polymerase II transcription","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0019224"],"synonyms":[{"name":"RNA 3'-end formation by RNA polymerase II","type":"exact"},{"name":"RNA polymerase II transcription termination","type":"exact"},{"name":"RNA polymerase II transcription termination factor activity","type":"related"},{"name":"transcription termination from Pol II promoter","type":"exact"},{"name":"transcription termination from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0006369","terms_by_termid":{"GO:0006369":null,"GO:0030847":null,"GO:1904595":null}}


id: PBO:0040075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin domain containing 3","termid":"PBO:0040075"}


id: PBO:0039494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 20 family member A17, pseudogene","termid":"PBO:0039494"}


id: GO:0039581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host PKR (protein kinase regulated by RNA) activity by binding to double-stranded RNA (dsRNA). Binding of viral proteins to RNA may sequester or alter the RNA so it can not be recognized by host PKR, or may compete with PKR for dsRNA binding.","definition_xrefs":["PMID:7514679"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host PKR activity via double-stranded RNA binding (obsolete GO:0039581)","synonyms":[{"name":"suppression by virus of host PKR activity by binding to dsRNA","type":"exact"}],"termid":"GO:0039581"}


id: PBO:0072602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 kinase related","termid":"PBO:0072602"}


id: GO:0010033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus.","definition_xrefs":["GOC:sm","PMID:23356676"],"gene_count":0,"genotype_count":0,"name":"obsolete response to organic substance (obsolete GO:0010033)","synonyms":[{"name":"process resulting in tolerance to organic substance","type":"narrow"}],"termid":"GO:0010033"}


id: GO:0043163
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cell envelope, everything external to, but not including, the cytoplasmic membrane of bacteria, encompassing the periplasmic space, cell wall, and outer membrane if present.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external encapsulating structure organization","termid":"GO:0045229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell envelope organization","synonyms":[{"name":"cell envelope organisation","type":"exact"},{"name":"cell envelope organization and biogenesis","type":"related"}],"termid":"GO:0043163"}


id: FYPO:0003757
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic sister chromatid segregation stops before completing separation of chromosomes; some, but not all, DNA may be moved towards the ends of an elongated mitotic spindle.","definition_xrefs":["PomBase:vw","PomBase:mah","PMID:8978688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic sister chromatid segregation","termid":"FYPO:0000141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000337","FYPO:0000641","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"incomplete mitotic sister chromatid segregation","synonyms":[{"name":"arrested mitotic sister chromatid segregation","type":"related"}],"termid":"FYPO:0003757"}


id: GO:0002381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of immunoglobulin due to biosynthesis or secretion following a cellular stimulus during an immune response, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["PMID:9185563","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin production","termid":"GO:0002377"},{"relation_name":"part_of","term_name":"immunoglobulin mediated immune response","termid":"GO:0016064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"immunoglobulin production involved in immunoglobulin-mediated immune response","secondary_identifiers":["GO:0002379","GO:0002380"],"synonyms":[{"name":"antibody production during immune response","type":"related"},{"name":"antibody secretion during immune response","type":"related"},{"name":"immunoglobulin biosynthetic process involved in immune response","type":"narrow"},{"name":"immunoglobulin production during immune response","type":"related"},{"name":"immunoglobulin production involved in immune response","type":"related"},{"name":"immunoglobulin production involved in immunoglobulin mediated immune response","type":"exact"},{"name":"immunoglobulin secretion involved in immune response","type":"narrow"}],"termid":"GO:0002381"}


id: GO:0099552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling between presynapse and postsynapse, via the release and reception of lipid molecules, that modulates the synaptic transmission properties of the synapse.","definition_xrefs":["PMID:21531987","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans-synaptic signaling by lipid","termid":"GO:0099541"},{"relation_name":"is_a","term_name":"trans-synaptic signaling, modulating synaptic transmission","termid":"GO:0099550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"trans-synaptic signaling by lipid, modulating synaptic transmission","termid":"GO:0099552"}


id: GO:0050077
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-maleylpyruvate = 3-fumarylpyruvate.","definition_xrefs":["MetaCyc:MALEYLPYRUVATE-ISOMERASE-RXN","EC:5.2.1.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis-trans isomerase activity","termid":"GO:0016859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"maleylpyruvate isomerase activity","secondary_identifiers":["RHEA:17393"],"synonyms":[{"name":"3-maleylpyruvate cis-trans-isomerase activity","type":"related"}],"termid":"GO:0050077"}


id: PBO:0035723
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_glycosylation_during_vegetative_growth","termid":"PBO:0035723"}


id: PBO:0003747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor, Atf-CREB family Atf21","termid":"PBO:0003747"}


id: GO:1902577
data:
  {"annotated_genes":["SJAG_03602"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94514],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0120047"}]},"cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a medial cortical node.","definition_xrefs":["GOC:TermGenie","PMID:24127216"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to medial cortex","termid":"GO:0071574"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03602":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to medial cortical node","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation in medial cortical node","type":"exact"},{"name":"protein localisation to medial cortical node","type":"exact"},{"name":"protein localization in medial cortical node","type":"exact"}],"termid":"GO:1902577","terms_by_termid":{"GO:0120047":null}}


id: PBO:0052670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 38","termid":"PBO:0052670"}


id: PBO:0044093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer/testis antigen family 47 member A1","termid":"PBO:0044093"}


id: PBO:0061170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Gln (CTG) 1-1","termid":"PBO:0061170"}


id: PBO:0059922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 8","termid":"PBO:0059922"}


id: SO:0002337
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Cytosolic 2S rRNA is a 30 nucleotide RNA component of the large subunit of cytosolic ribosomes in Drosophila and at least some other Diptera. It is homologous to the 3' part of other 5.8S rRNA molecules. The 3' end of the 5.8S molecule is able to base-pair with the 5' end of the 2S rRNA to generate a helical region equivalent in position to the 'GC-rich hairpin' found in all previously sequenced 5.8S molecules.","definition_xrefs":["PMID:4847940","PMID:768488","PMID:10788608","PMID:407103"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"cytosolic_rRNA_2S_gene","termid":"SO:0002336"},{"relation_name":"is_a","term_name":"cytosolic_LSU_rRNA","termid":"SO:0000651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_2S_rRNA","synonyms":[{"name":"cytosolic 2S rRNA","type":"exact"},{"name":"cytosolic rRNA 2S","type":"exact"}],"termid":"SO:0002337"}


id: PBO:0078667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 3-2","termid":"PBO:0078667"}


id: SO:0000073
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to describe a gene when the five prime region overlaps with another gene's 3' region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"overlapping","termid":"SO:0000068"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_three_prime_overlap","synonyms":[{"name":"five prime-three prime overlap","type":"exact"}],"termid":"SO:0000073"}


id: GO:0048880
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a sensory system over time from its formation to the mature structure.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"system development","termid":"GO:0048731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory system development","termid":"GO:0048880"}


id: PR:O36025
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mpd2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O36025"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GYF domain-containing protein mpd2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.13c","synonyms":[{"name":"Spom972h-mpd2","type":"exact"}],"termid":"PR:O36025"}


id: PATO:0001711
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Perimeter"],"direct_ancestors":[{"relation_name":"is_a","term_name":"length","termid":"PATO:0000122"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"perimeter","termid":"PATO:0001711"}


id: PBO:0064960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 12","termid":"PBO:0064960"}


id: PBO:0090933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lsm1-7 complex subunit Lsm1","termid":"PBO:0090933"}


id: GO:0050003
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dCMP = 2'-deoxy-5-methyl-5'-cytidylate + 7,8-dihydrofolate.","definition_xrefs":["RHEA:11568","EC:2.1.1.54"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-methyltransferase activity","termid":"GO:0008169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"deoxycytidylate C-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01670","MetaCyc:DEOXYCYTIDYLATE-C-METHYLTRANSFERASE-RXN"],"synonyms":[{"name":"5,10-methylenetetrahydrofolate:dCMP C-methyltransferase activity","type":"related"},{"name":"dCMP methyltransferase activity","type":"related"},{"name":"deoxycytidylate methyltransferase activity","type":"related"}],"termid":"GO:0050003"}


id: GO:1900862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cordyol C biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"negative regulation of secondary metabolite biosynthetic process","termid":"GO:1900377"},{"relation_name":"is_a","term_name":"regulation of cordyol C biosynthetic process","termid":"GO:1900861"},{"relation_name":"negatively_regulates","term_name":"cordyol C biosynthetic process","termid":"GO:1900799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cordyol C biosynthetic process","synonyms":[{"name":"down regulation of cordyol C biosynthetic process","type":"exact"},{"name":"down-regulation of cordyol C biosynthetic process","type":"exact"},{"name":"downregulation of cordyol C biosynthetic process","type":"exact"}],"termid":"GO:1900862"}


id: GO:0019448
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-cysteine, the L-enantiomer of 2-amino-3-mercaptopropanoic acid, i.e. (2R)-2-amino-3-mercaptopropanoic acid.","definition_xrefs":["GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine family amino acid catabolic process","termid":"GO:0009071"},{"relation_name":"is_a","term_name":"cysteine catabolic process","termid":"GO:0009093"},{"relation_name":"is_a","term_name":"L-cysteine metabolic process","termid":"GO:0046439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044248","GO:0044281","GO:0006790"],"is_obsolete":false,"name":"L-cysteine catabolic process","synonyms":[{"name":"L-cysteine breakdown","type":"exact"},{"name":"L-cysteine catabolism","type":"exact"},{"name":"L-cysteine degradation","type":"exact"}],"termid":"GO:0019448"}


id: FYPO:0003022
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of nocodazole than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0000003","FYPO:0002682","FYPO:0001985"],"is_obsolete":false,"name":"resistance to nocodazole","synonyms":[{"name":"resistance to nocodazole during mitotic cell cycle","type":"related"},{"name":"resistance to nocodazole during vegetative growth","type":"exact"},{"name":"resistant to nocodazole","type":"exact"}],"termid":"FYPO:0003022"}


id: PATO:0002008
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave.","definition_xrefs":["PATOC:CJM"],"direct_ancestors":[{"relation_name":"has_part","term_name":"concave","termid":"PATO:0001857"},{"relation_name":"is_a","term_name":"3-D shape","termid":"PATO:0002266"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"concave 3-D shape","secondary_identifiers":["Image:http\\://en.wikipedia.org/wiki/Image\\:Convex_polygon_illustration2.png"],"termid":"PATO:0002008"}


id: PBO:0047902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(7)(q36)","termid":"PBO:0047902"}


id: PBO:0013742
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interaction_note","termid":"PBO:0013742"}


id: PBO:0065051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRELI domain containing 3B pseudogene 5","termid":"PBO:0065051"}


id: PBO:0040929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 like","termid":"PBO:0040929"}


id: PBO:0047869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(2)(q33)","termid":"PBO:0047869"}


id: PBO:0075460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 9","termid":"PBO:0075460"}


id: PBO:0049200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIK1 antisense RNA 1","termid":"PBO:0049200"}


id: FYPO:0005746
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein export from nucleus is decreased when the cell is subject to glucose starvation. Export of all proteins or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein export from nucleus","termid":"FYPO:0005745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein export from nucleus during glucose starvation","synonyms":[{"name":"decreased protein export from nucleus during cellular response to glucose starvation","type":"exact"},{"name":"decreased protein export from nucleus during glucose depletion","type":"exact"},{"name":"decreased protein export from nucleus during glucose deprivation","type":"exact"},{"name":"decreased protein export from nucleus during glucose limitation","type":"related"},{"name":"reduced protein export from nucleus during glucose starvation","type":"exact"}],"termid":"FYPO:0005746"}


id: PBO:0091781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dubious protein, reverse strand of sno20","termid":"PBO:0091781"}


id: PBO:0065534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"papillary thyroid carcinoma susceptibility candidate 1","termid":"PBO:0065534"}


id: PBO:0030228
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_tacrolimus","termid":"PBO:0030228"}


id: PBO:0051653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inosine monophosphate dehydrogenase 1 pseudogene 8","termid":"PBO:0051653"}


id: PBO:0076345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 12","termid":"PBO:0076345"}


id: PBO:0060423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAALADL2 antisense RNA 2","termid":"PBO:0060423"}


id: GO:0044697
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multisubunit complex involved in cytokinesis. In the yeast Saccharomyces cerevisiae this complex consists of Sho1p, Hof1p, Inn1p and Cyk3p proteins.","definition_xrefs":["PMID:22623719"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"HICS complex","termid":"GO:0044697"}


id: GO:0061902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of 1-phosphatidylinositol-3-kinase activity.","definition_xrefs":["PMID:18723082","GOC:aruk","GOC:bc"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of 1-phosphatidylinositol-3-kinase activity (obsolete GO:0061902)","termid":"GO:0061902"}


id: PR:Q9P7H3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A prohibitin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR23222:SF0","PRO:DNx","OMA:SCHPO01972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prohibitin-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1782.06c","secondary_identifiers":["UniProtKB:Q9P7H3"],"synonyms":[{"name":"Spom972h-PHB","type":"exact"}],"termid":"PR:Q9P7H3"}


id: GO:0019520
data:
  {"annotated_genes":["SJAG_00633","SJAG_03852"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94266,107731],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046177"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving aldonic acid, a monocarboxylic acid with a chain of three or more carbon atoms, derived from an aldose by oxidation of the aldehydic group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate metabolic process","termid":"GO:0005975"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00633":null,"SJAG_03852":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"aldonic acid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"aldonic acid metabolism","type":"exact"}],"termid":"GO:0019520","terms_by_termid":{"GO:0046177":null}}


id: FYPO:0008153
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin at the silent mating-type cassette is abolished.","direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001132"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished protein localization to heterochromatin at  silent mating-type cassette during vegetative growth","synonyms":[{"name":"abolished protein localization to mating-type locus heterochromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0008153"}


id: PBO:0048426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATD1 divergent transcript","termid":"PBO:0048426"}


id: MOD:01748
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an N'-hydrogen atom of a histidine residue with the Proteome Sciences TMT6plex-129 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent N-acylated residue","termid":"MOD:01717"},{"relation_name":"is_a","term_name":"TMT6plex-129 reporter+balance reagent acylated residue","termid":"MOD:01744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"TMT6plex-129 reporter+balance reagent N'-acylated histidine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01748"}


id: PBO:0073849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC9A3 antisense RNA 1","termid":"PBO:0073849"}


id: PBO:0051157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-37 (pseudogene)","termid":"PBO:0051157"}


id: PBO:0089002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Spo12 family nuclear protein","termid":"PBO:0089002"}


id: PBO:0045434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPY19L2 pseudogene 2","termid":"PBO:0045434"}


id: PBO:0029865
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_spheroid_vegetative_cell_population_(obsolete_FYPO:0002372)","termid":"PBO:0029865"}


id: PBO:0078020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 10","termid":"PBO:0078020"}


id: PBO:0062165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily K member 6 pseudogene","termid":"PBO:0062165"}


id: GO:0090267
data:
  {"annotated_genes":["SJAG_01837"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112863],"is_not":false,"summary":null,"term":"GO:0090267"}]},"cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the mitotic cell cycle spindle assembly checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.","definition_xrefs":["GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"is_a","term_name":"positive regulation of spindle checkpoint","termid":"GO:0090232"},{"relation_name":"is_a","term_name":"regulation of mitotic cell cycle spindle assembly checkpoint","termid":"GO:0090266"},{"relation_name":"positively_regulates","term_name":"mitotic spindle assembly checkpoint signaling","termid":"GO:0007094"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01837":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"regulates","termid":"GO:0000070"}],"interesting_parent_ids":["GO:0023052","GO:0044772","GO:0008150","GO:0007049","GO:0000070"],"is_obsolete":false,"name":"positive regulation of mitotic cell cycle spindle assembly checkpoint","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0090267","terms_by_termid":{"GO:0090267":null}}


id: PBO:0053761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1003","termid":"PBO:0053761"}


id: PR:P87115
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An RNA cytidine acetyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00570","PANTHER:PTHR10925:SF5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA cytidine acetyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20G8.09c","secondary_identifiers":["UniProtKB:P87115"],"synonyms":[{"name":"18S rRNA cytosine acetyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NAT10","type":"exact"}],"termid":"PR:P87115"}


id: PBO:0001829
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Delayed minus-Nitrogen Induction","termid":"PBO:0001829"}


id: PBO:0062136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily F member 3","termid":"PBO:0062136"}


id: GO:0035139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the pelvic fin are generated and organized. Pelvic fins are bilaterally paired fins mounted in a ventral-lateral position on most fish. These fins are used primarily for lateral mobility and propulsion.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fin morphogenesis","termid":"GO:0033334"},{"relation_name":"part_of","term_name":"pelvic fin development","termid":"GO:0033340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pelvic fin morphogenesis","termid":"GO:0035139"}


id: PBO:0066202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 17 pseudogene 3","termid":"PBO:0066202"}


id: PBO:0065494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome assembly chaperone 3","termid":"PBO:0065494"}


id: SO:0001412
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A DNA region within which self-interaction occurs more often than expected by chance because of DNA-looping.","definition_xrefs":["PMID:32782014","SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"region","termid":"SO:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"topologically_defined_region","synonyms":[{"name":"topologically defined region","type":"exact"}],"termid":"SO:0001412"}


id: PBO:0000484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)","termid":"PBO:0000484"}


id: SO:0001159
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162).","definition_xrefs":["PMID:12537576:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMv5_motif","synonyms":[{"name":"DMv5","type":"exact"},{"name":"DMv5 motif","type":"exact"},{"name":"KTYRGTATWTTT","type":"narrow"},{"name":"directional motif v5","type":"exact"},{"name":"promoter motif 6","type":"related"}],"termid":"SO:0001159"}


id: GO:0060043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cardiac muscle cell proliferation.","definition_xrefs":["GOC:rph","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"is_a","term_name":"regulation of cardiac muscle tissue growth","termid":"GO:0055021"},{"relation_name":"regulates","term_name":"cardiac muscle cell proliferation","termid":"GO:0060038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cardiac muscle cell proliferation","synonyms":[{"name":"regulation of cardiomyocyte proliferation","type":"related"},{"name":"regulation of heart muscle cell proliferation","type":"exact"}],"termid":"GO:0060043"}


id: FYPO:0002229
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of ergosterol measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal cellular ergosterol level","synonyms":[{"name":"normal cellular ergosterol accumulation","type":"related"},{"name":"normal cellular ergosterol level during mitotic cell cycle","type":"related"},{"name":"normal cellular ergosterol level during vegetative growth","type":"exact"}],"termid":"FYPO:0002229"}


id: PBO:0065516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypyrimidine tract binding protein 1 pseudogene","termid":"PBO:0065516"}


id: PBO:0091903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal cell surface protein, Kre9/Knh1 family, Knh3","termid":"PBO:0091903"}


id: FYPO:0001204
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cells enter mitosis earlier or later than normal, relative to cell size or DNA integrity checkpoint status.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitosis","termid":"FYPO:0000337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000631","FYPO:0000337","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mistimed mitosis","synonyms":[{"name":"abnormal onset of mitosis","type":"exact"},{"name":"mistimed mitosis during mitotic cell cycle","type":"related"},{"name":"mistimed mitosis during vegetative growth","type":"exact"}],"termid":"FYPO:0001204"}


id: PBO:0081099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type containing 24","termid":"PBO:0081099"}


id: PR:O42922
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC16A3.17c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized MFS-type transporter C16A3.17c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16A3.17c","synonyms":[{"name":"Spom972h-SPBC16A3.17c","type":"exact"}],"termid":"PR:O42922"}


id: PBO:0066850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 150","termid":"PBO:0066850"}


id: PBO:0059138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPHOSPH10 pseudogene 5","termid":"PBO:0059138"}


id: GO:0062129
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any constituent part of a chitin-based noncellular, hardened, or membranous extracellular matrix secreted from the apical surface of an epithelial sheet.","definition_xrefs":["PMID:23955854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix","termid":"GO:0031012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"chitin-based extracellular matrix","synonyms":[{"name":"chitin-based ECM","type":"exact"}],"termid":"GO:0062129"}


id: PBO:0053942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1243","termid":"PBO:0053942"}


id: RO:0002242
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A broad relationship between an exposure event or process and a process by which the exposure stressor comes into contact with the exposure receptor","direct_ancestors":[{"relation_name":"is_a","term_name":"related_via_exposure_to","termid":"RO:0002244"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_exposure_route","termid":"RO:0002242"}


id: GO:0016013
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that includes alpha-, beta1-, beta2-syntrophins and syntrophin-like proteins; the syntrophin complex binds to the second half of the carboxy-terminal domain of dystrophin; also associates with neuronal nitric oxide synthase.","definition_xrefs":["PMID:23263165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"dystrophin-associated glycoprotein complex","termid":"GO:0016010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"syntrophin complex","synonyms":[{"name":"nitric oxide synthase-dystrophin complex, skeletal muscle","type":"related"}],"termid":"GO:0016013"}


id: GO:0097016
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a L27 domain of a protein. L27 is composed of conserved negatively charged amino acids and a conserved aromatic amino acid. L27 domains can assemble proteins involved in signaling and establishment and maintenance of cell polarity into complexes by interacting in a heterodimeric manner.","definition_xrefs":["GOC:BHF","PMID:15241471","Prosite:PDOC51022","PMID:17237226"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"L27 domain binding","termid":"GO:0097016"}


id: PBO:0077992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRABD antisense RNA 1","termid":"PBO:0077992"}


id: PATO:0002012
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A texture quality that exists through a liquid cover on the surface of the bearer.","definition_xrefs":["Wikipedia:Wikipedia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"texture","termid":"PATO:0000150"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coating","termid":"PATO:0002012"}


id: PBO:0039632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AOAH intronic transcript 1","termid":"PBO:0039632"}


id: GO:0008607
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Modulation of the activity of the enzyme phosphorylase kinase.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase regulator activity","termid":"GO:0019887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0030234","GO:0098772"],"is_obsolete":false,"name":"phosphorylase kinase regulator activity","synonyms":[{"name":"phosphorylase kinase, intrinsic regulator activity","type":"narrow"}],"termid":"GO:0008607"}


id: PBO:0077761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOMM20 pseudogene 3","termid":"PBO:0077761"}


id: PBO:0110066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPR repeat protein, implicated in rRNA processing from interactions, human TTC27 ortholog","termid":"PBO:0110066"}


id: GO:0060853
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell and contributing to the commitment of a cell to an arterial endothelial cell fate.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Notch signaling pathway","termid":"GO:0007219"},{"relation_name":"part_of","term_name":"arterial endothelial cell fate commitment","termid":"GO:0060844"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Notch signaling pathway involved in arterial endothelial cell fate commitment","synonyms":[{"name":"Notch signalling pathway involved in arterial endothelial cell fate commitment","type":"exact"}],"termid":"GO:0060853"}


id: PBO:0030679
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_vegetative_cell_size","termid":"PBO:0030679"}


id: GO:0160126
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A gated channel activity that enables the transmembrane transfer of a calcium ion by a channel that opens in response to a change in pH.","definition_xrefs":["PMID:30930064","PMID:34767445"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligand-gated calcium channel activity","termid":"GO:0099604"},{"relation_name":"is_a","term_name":"pH-gated monoatomic ion channel activity","termid":"GO:0160128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"pH-gated calcium channel activity","synonyms":[{"name":"pH-dependent calcium channel activity","type":"related"},{"name":"pH-sensitive calcium channel activity","type":"related"}],"termid":"GO:0160126"}


id: GO:0047201
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 1-O-galloyl-beta-D-glucose = 1,6-bis-O-galloyl-beta-D-glucose + D-glucose.","definition_xrefs":["EC:2.3.1.90","RHEA:11416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"beta-glucogallin O-galloyltransferase activity","secondary_identifiers":["MetaCyc:2.3.1.90-RXN","KEGG_REACTION:R00049"],"synonyms":[{"name":"1-O-galloyl-beta-D-glucose:1-O-galloyl-beta-D-glucose O-galloyltransferase activity","type":"related"}],"termid":"GO:0047201"}


id: GO:0047898
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: formate + ferricytochrome b1 = CO2 + ferrocytochrome b1.","definition_xrefs":["EC:1.2.2.1","MetaCyc:FORMATE-DEHYDROGENASE-CYTOCHROME-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, cytochrome as acceptor","termid":"GO:0016622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"formate dehydrogenase (cytochrome) activity","secondary_identifiers":["RHEA:21520"],"synonyms":[{"name":"formate:cytochrome b1 oxidoreductase activity","type":"related"},{"name":"formate:ferricytochrome-b1 oxidoreductase activity","type":"related"}],"termid":"GO:0047898"}


id: GO:0110131
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex that localizes to actin cortical patches at sites of endocytosis and negatively regulates barbed end F-actin assembly, resulting in the generation of free actin pools. The Aim21-Tda2 complex is necessary for efficient endocytosis and balancing the distribution of actin between patches and cables.","definition_xrefs":["PMID:28706108","GOC:rn","PMID:29467252"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"actin cortical patch","termid":"GO:0030479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030479"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0015629","GO:0030479","GO:0005575","GO:0005938"],"is_obsolete":false,"name":"Aim21-Tda2 complex","synonyms":[{"name":"Aim21/Tda2 complex","type":"exact"}],"termid":"GO:0110131"}


id: PBO:0035968
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_actin_cable_assembly","termid":"PBO:0035968"}


id: PBO:0047795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box G1","termid":"PBO:0047795"}


id: GO:0100040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates invasive growth in response to glucose limitation.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of invasive growth in response to glucose limitation by transcription from RNA polymerase II promoter (obsolete GO:0100040)","termid":"GO:0100040"}


id: PBO:0063509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDS5 cohesin associated factor B","termid":"PBO:0063509"}


id: GO:0031620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate or extent of fever generation.","definition_xrefs":["GOC:dph","GOC:tb","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of acute inflammatory response","termid":"GO:0002673"},{"relation_name":"is_a","term_name":"regulation of heat generation","termid":"GO:0031650"},{"relation_name":"regulates","term_name":"fever generation","termid":"GO:0001660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of fever generation","synonyms":[{"name":"regulation of pyrexia","type":"exact"}],"termid":"GO:0031620"}


id: GO:0015244
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of fluconazole from one side of a membrane to the other. Fluconazole is an antifungal drug used for oral candidiasis and cryptococcal meningitis; it is still under study for treatment of vaginal candidiasis and other fungal infections.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol transmembrane transporter activity","termid":"GO:0015665"},{"relation_name":"is_a","term_name":"azole transmembrane transporter activity","termid":"GO:1901474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"fluconazole transmembrane transporter activity","synonyms":[{"name":"fluconazole transporter activity","type":"related"}],"termid":"GO:0015244"}


id: GO:0047552
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 2-oxoaldehyde + NADP+ + H2O = a 2-oxo acid + NADPH + H+.","definition_xrefs":["RHEA:18129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NADP+) activity","termid":"GO:0033721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-oxoaldehyde dehydrogenase (NADP+) activity","secondary_identifiers":["EC:1.2.1.49","MetaCyc:2-OXOALDEHYDE-DEHYDROGENASE-NADP+-RXN"],"synonyms":[{"name":"2-ketoaldehyde dehydrogenase","type":"broad"},{"name":"2-oxoaldehyde:NADP+ 2-oxidoreductase activity","type":"related"},{"name":"NADP-dependent alpha-ketoaldehyde dehydrogenase activity","type":"related"},{"name":"NADP-linked alpha-ketoaldehyde dehydrogenase activity","type":"related"},{"name":"alpha-ketoaldehyde dehydrogenase activity","type":"broad"},{"name":"methylglyoxal dehydrogenase activity","type":"broad"}],"termid":"GO:0047552"}


id: FYPO:0000913
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A sporulation phenotype that results in the formation of an ascus that contains spores of non-uniform size and DNA content.","definition_xrefs":["PomBase:vw","PomBase:mah","PMID:20298435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sporulation","termid":"FYPO:0000121"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000121"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000121","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal sporulation resulting in formation of ascus containing non-uniform spores","synonyms":[{"name":"abnormal ascospore formation resulting in formation ascus containing non-uniform spores","type":"exact"},{"name":"abnormal sporulation resulting in formation of asci containing non-uniform spores","type":"related"}],"termid":"FYPO:0000913"}


id: PBO:0087071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L35A; homologous to mammalian ribosomal protein L35 and bacterial L29; RPL35A has a paralog, RPL35B, that arose from the whole genome duplication","termid":"PBO:0087071"}


id: FYPO:0000333
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the G1/S transition of the mitotic cell cycle begins later than normal. The duration of G1 phase is thus longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic G1/S phase transition","termid":"FYPO:0000394"},{"relation_name":"is_a","term_name":"delayed cell cycle phase transition","termid":"FYPO:0000409"},{"relation_name":"is_a","term_name":"abnormal mitotic G1 phase progression","termid":"FYPO:0000602"},{"relation_name":"is_a","term_name":"increased duration of mitotic cell cycle phase","termid":"FYPO:0001069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"mitotic G1/S phase transition delay","secondary_identifiers":["FYPO:0000396","FYPO:0000543","FYPO:0000480"],"synonyms":[{"name":"G1/S transition delay during mitotic cell cycle","type":"related"},{"name":"cell cycle progression through the G1/S phase transition: delayed","type":"related"},{"name":"delayed cell cycle progression through mitotic G1/S phase transition","type":"exact"},{"name":"delayed mitotic G1 phase progression","type":"related"},{"name":"increased duration of mitotic G1 phase","type":"related"},{"name":"increased duration of mitotic G1 phase during vegetative growth","type":"related"},{"name":"increased duration of mitotic G1 phase progression","type":"related"},{"name":"mitotic G1/S phase transition delay during vegetative growth","type":"exact"},{"name":"mitotic G1/S transition delay","type":"exact"},{"name":"mitotic cell cycle delay at G1/S transition","type":"exact"},{"name":"mitotic cell cycle delay in G1","type":"related"},{"name":"transient cell cycle arrest in mitotic G1 phase","type":"exact"}],"termid":"FYPO:0000333"}


id: GO:1900176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of a nodal signaling pathway, where the nodal signaling pathway is involved in determination of left/right asymmetry in the lateral mesoderm.","definition_xrefs":["PMID:15084459","GOC:vk","GOC:TermGenie","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry (obsolete GO:1900176)","synonyms":[{"name":"down-regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"downregulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"inhibition of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"narrow"},{"name":"negative regulation of nodal signalling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"}],"termid":"GO:1900176"}


id: SOFP:na_change
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"A nucleic acid modification in some variant feature relative to the reference sequence","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"na_change","termid":"SOFP:na_change"}


id: GO:0044325
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a transmembrane transporter, a protein or protein complex that enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.","definition_xrefs":["PMID:33199372","GOC:BHF","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"transmembrane transporter binding","synonyms":[{"name":"ion channel binding","type":"narrow"}],"termid":"GO:0044325"}


id: PATO:0001702
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of violet hue and high saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"violet","termid":"PATO:0001424"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"saturated violet","synonyms":[{"name":"bright violet","type":"related"}],"termid":"PATO:0001702"}


id: PBO:0045255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyribonuclease 1 like 1","termid":"PBO:0045255"}


id: GO:0009488
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A copper-containing protein that acts as an electron carrier between methylamine dehydrogenase and cytochrome c.","definition_xrefs":["PMID:1655423"],"gene_count":0,"genotype_count":0,"name":"obsolete amicyanin (obsolete GO:0009488)","synonyms":[{"name":"amicyanin","type":"exact"}],"termid":"GO:0009488"}


id: GO:0014904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle cell development","termid":"GO:0055002"},{"relation_name":"part_of","term_name":"myotube differentiation","termid":"GO:0014902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myotube cell development","termid":"GO:0014904"}


id: GO:0051564
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the concentration of calcium ions in the smooth endoplasmic reticulum.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endoplasmic reticulum calcium ion concentration","termid":"GO:0032470"},{"relation_name":"is_a","term_name":"smooth endoplasmic reticulum calcium ion homeostasis","termid":"GO:0051563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"positive regulation of smooth endoplasmic reticulum calcium ion concentration","synonyms":[{"name":"elevation of calcium ion concentration in smooth endoplasmic reticulum","type":"exact"},{"name":"elevation of smooth ER calcium ion concentration","type":"exact"},{"name":"elevation of smooth endoplasmic reticulum calcium ion concentration","type":"exact"},{"name":"smooth endoplasmic reticulum calcium ion concentration elevation","type":"exact"}],"termid":"GO:0051564"}


id: PBO:0051629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ILVBL antisense RNA 1","termid":"PBO:0051629"}


id: PBO:0070281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, variant U1 small nuclear 22","termid":"PBO:0070281"}


id: GO:0033516
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including homoserine, via the intermediates O-phospho-L-homoserine and cystathionine.","definition_xrefs":["GOC:mah","MetaCyc:PWY-702"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-methionine biosynthetic process from L-homoserine via cystathionine","termid":"GO:0019279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"L-methionine biosynthetic process from homoserine via O-phospho-L-homoserine and cystathionine","synonyms":[{"name":"L-methionine anabolism from homoserine via O-phospho-L-homoserine and cystathionine","type":"exact"},{"name":"L-methionine formation from homoserine via O-phospho-L-homoserine and cystathionine","type":"exact"},{"name":"L-methionine synthesis from homoserine via O-phospho-L-homoserine and cystathionine","type":"exact"},{"name":"methionine biosynthetic process from homoserine via O-phospho-L-homoserine and cystathionine","type":"exact"}],"termid":"GO:0033516"}


id: GO:0070509
data:
  {"annotated_genes":["SJAG_02877","SJAG_03631","SJAG_05229","SJAG_00296","SJAG_04551","SJAG_04668","SJAG_01090"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110601,88425,95717,88372],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098703"},{"annotations":[109525,87241],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905949"},{"annotations":[98246],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905665"}]},"cv_name":"biological_process","definition":"The directed movement of calcium ions into a cell or organelle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium ion transport","termid":"GO:0006816"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_01090":null,"SJAG_02877":null,"SJAG_03631":null,"SJAG_04551":null,"SJAG_04668":null,"SJAG_05229":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"calcium ion import","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"calcium ion uptake","type":"exact"},{"name":"transmembrane calcium influx","type":"related"}],"termid":"GO:0070509","terms_by_termid":{"GO:0098703":null,"GO:1905665":null,"GO:1905949":null}}


id: SO:0001421
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The boundary between an intron and an exon.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"junction","termid":"SO:0000699"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splice_junction","synonyms":[{"name":"splice boundary","type":"exact"},{"name":"splice junction","type":"exact"}],"termid":"SO:0001421"}


id: PBO:0068212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 519","termid":"PBO:0068212"}


id: GO:1990891
data:
  {"annotated_genes":["SJAG_01837"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112865],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905824"}]},"cv_name":"biological_process","definition":"The cell cycle process in which sister chromatid arms are physically detached from each other during mitosis.","definition_xrefs":["PMID:21633354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"part_of","term_name":"mitotic sister chromatid separation","termid":"GO:0051306"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01837":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000070"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0000070","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"mitotic sister chromatid arm separation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990891","terms_by_termid":{"GO:1905824":null}}


id: GO:0010068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of the primary meristem or meristematic tissue that gives rise to the epidermis.","definition_xrefs":["ISBN:0471245208","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary meristem tissue development","termid":"GO:0010065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protoderm histogenesis","termid":"GO:0010068"}


id: PBO:0078382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional regulating factor 1","termid":"PBO:0078382"}


id: PATO:0001754
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A peramorphic growth quality which is due to an earlier onset.","definition_xrefs":["PATOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peramorphic growth","termid":"PATO:0001752"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"predisplaced growth","synonyms":[{"name":"precocious growth","type":"exact"}],"termid":"PATO:0001754"}


id: PBO:0079527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-yW synthesizing protein 1 homolog B","termid":"PBO:0079527"}


id: PBO:0041140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTF3 divergent transcript","termid":"PBO:0041140"}


id: GO:0006116
data:
  {"annotated_genes":["SJAG_00409","SJAG_01539","SJAG_04152","SJAG_01012"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90025,92788,102623,109018],"is_not":false,"summary":null,"term":"GO:0006116"}]},"cv_name":"biological_process","definition":"A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADH, to the oxidized form, NAD+.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NADH metabolic process","termid":"GO:0006734"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_01012":null,"SJAG_01539":null,"SJAG_04152":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"NADH oxidation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NAD (reduced) dehydrogenation","type":"exact"},{"name":"NAD (reduced) oxidation","type":"exact"},{"name":"NADH dehydrogenation","type":"exact"},{"name":"reduced NAD dehydrogenation","type":"exact"},{"name":"reduced NAD oxidation","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide dehydrogenation","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide oxidation","type":"exact"}],"termid":"GO:0006116","terms_by_termid":{"GO:0006116":null}}


id: GO:0097072
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An interferon regulatory factor complex that consists of a homodimer of interferon regulatory factor 3.","definition_xrefs":["PMID:12855817","GOC:cna","PMID:14556004"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interferon regulatory factor complex","termid":"GO:0097071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"interferon regulatory factor 3 complex","synonyms":[{"name":"IRF3:IRF3 complex","type":"exact"}],"termid":"GO:0097072"}


id: FYPO:0001581
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which vacuoles are more visible (usually by microscopy) than normal. A vacuolated phenotype may be due to the presence of more vacuoles in a cell than normal, or to vacuoles located nearer the cell surface (and hence more visible) than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"vacuolated","synonyms":[{"name":"vacuolated during mitotic cell cycle","type":"related"},{"name":"vacuolated during vegetative growth","type":"exact"}],"termid":"FYPO:0001581"}


id: PBO:0079595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 E1","termid":"PBO:0079595"}


id: GO:0036070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a bacteriochlorophyll, which occur in the absence of light. Bacteriochlorophylls are any of the chlorophylls of photosynthetic bacteria; they differ structurally from the chlorophylls of higher plants.","definition_xrefs":["PMID:12242396","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacteriochlorophyll biosynthetic process","termid":"GO:0030494"},{"relation_name":"is_a","term_name":"light-independent chlorophyll biosynthetic process","termid":"GO:0036068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"light-independent bacteriochlorophyll biosynthetic process","synonyms":[{"name":"light independent bacteriochlorophyll biosynthetic process","type":"exact"},{"name":"light-independent bacteriochlorophyll anabolism","type":"exact"},{"name":"light-independent bacteriochlorophyll biosynthesis","type":"exact"},{"name":"light-independent bacteriochlorophyll formation","type":"exact"},{"name":"light-independent bacteriochlorophyll synthesis","type":"exact"}],"termid":"GO:0036070"}


id: FYPO:0007894
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which ubiquitination of lysine at position 119 of histone H2B is increased at subtelomeric heterochromatin. Lysine 119 corresponds to the conserved C-terminal lysine of H2B.","definition_xrefs":["PMID:34731638"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein ubiquitination during vegetative growth","termid":"FYPO:0002082"},{"relation_name":"is_a","term_name":"abnormal histone H2B-K119 ubiquitination during vegetative growth","termid":"FYPO:0005607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0002274","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H2B-K119 ubiquitination at subtelomeric heterochromatin","termid":"FYPO:0007894"}


id: PR:O74541
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC777.02 gene.","definition_xrefs":["UniProtKB:O74541","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C777.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.02","synonyms":[{"name":"Spom972h-SPCC777.02","type":"exact"}],"termid":"PR:O74541"}


id: FYPO:0003562
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the horsetail nucleus is normal (i.e. indistinguishable from wild type). The horsetail nucleus forms during the rapid oscillatory movement at meiotic prophase I.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear morphology","termid":"FYPO:0001673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal horsetail nucleus morphology","synonyms":[{"name":"normal horsetail nuclear morphology","type":"exact"}],"termid":"FYPO:0003562"}


id: GO:1905207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cardiocyte differentiation.","definition_xrefs":["GOC:bc","PMID:23069713","GOC:BHF","GOC:BHF_miRNA","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"cardiocyte differentiation","termid":"GO:0035051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cardiocyte differentiation","synonyms":[{"name":"regulation of cardiac cell differentiation","type":"exact"},{"name":"regulation of heart cell differentiation","type":"exact"}],"termid":"GO:1905207"}


id: GO:0030504
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of inorganic diphosphate across a membrane.","definition_xrefs":["PMID:11326272"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"inorganic diphosphate transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-5226964"],"synonyms":[{"name":"inorganic pyrophosphate transporter activity","type":"exact"}],"termid":"GO:0030504"}


id: PBO:0027706
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_DNA_polymerase_processivity_factor_activity","termid":"PBO:0027706"}


id: PBO:0004103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanyl-nucleotide exchange factor Vps902 (predicted)","termid":"PBO:0004103"}


id: FYPO:0000999
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the nucleus is larger than normal when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah","PMID:19366728"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enlarged nucleus","termid":"FYPO:0002255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002403","FYPO:0001985"],"is_obsolete":false,"name":"enlarged nucleus during nitrogen starvation","synonyms":[{"name":"enlarged nuclei during nitrogen starvation","type":"exact"},{"name":"enlarged nucleus during nitrogen depletion","type":"exact"},{"name":"enlarged nucleus during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0000999"}


id: PBO:0039389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amylase alpha pseudogene 1","termid":"PBO:0039389"}


id: PATO:0002133
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A displaced angular placement quality inhering in a body part by virtue of the bearer's movement closer the medial plane of the body.","definition_xrefs":["wikipedia:wikipedia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"displaced to","termid":"PATO:0002168"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adduction","termid":"PATO:0002133"}


id: GO:0048797
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the swim bladder. This process pertains to the initial formation of a structure from unspecified parts. The swim bladder is used by some fishes to maintain buoyancy and may function in addition as a sound producing organ, a sound receptor, and a respiratory organ.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ formation","termid":"GO:0048645"},{"relation_name":"part_of","term_name":"swim bladder morphogenesis","termid":"GO:0048795"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"swim bladder formation","synonyms":[{"name":"gas bladder biosynthesis","type":"exact"},{"name":"gas bladder formation","type":"exact"}],"termid":"GO:0048797"}


id: PR:O94246
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutamate--cysteine ligase regulatory subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR13295:SF4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate--cysteine ligase regulatory subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC737.06c","secondary_identifiers":["UniProtKB:O94246"],"synonyms":[{"name":"GCS light chain (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GCLM","type":"exact"},{"name":"gamma-ECS regulatory subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"gamma-glutamylcysteine synthetase regulatory subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"glutamate--cysteine ligase modifier subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94246"}


id: PBO:0030286
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_sulfide_level","termid":"PBO:0030286"}


id: GO:1903092
data:
  {"annotated_genes":["SJAG_02152","SJAG_03808","SJAG_03652","SJAG_02962"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86172,86173,113658,114935],"is_not":false,"summary":null,"term":"GO:1903092"}]},"cv_name":"biological_process","definition":"The process in which pyridoxine is transported across a membrane.","definition_xrefs":["PMID:15701794","GO_REF:0000069","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridoxine transport","termid":"GO:0031923"},{"relation_name":"is_a","term_name":"vitamin transmembrane transport","termid":"GO:0035461"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02152":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"pyridoxine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1903092","terms_by_termid":{"GO:1903092":null}}


id: GO:0140493
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A fatty acid beta-oxidation pathway acting on a very long-chain fatty acid. A very long-chain fatty acid has an aliphatic tail containing more than 22 carbons. The partway stars with the conversion of an acyl-CoA to a trans-2-enoyl-CoA, catalyzed by acyl-CoA oxidase; the electrons removed by oxidation pass directly to oxygen and produce hydrogen peroxide, which is cleaved by peroxisomal catalases. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).","definition_xrefs":["GOC:ha","PMID:32169171","PMID:17028011"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid beta-oxidation using acyl-CoA oxidase","termid":"GO:0033540"},{"relation_name":"is_a","term_name":"very long-chain fatty acid catabolic process","termid":"GO:0042760"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044248","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"very long-chain fatty acid beta-oxidation","termid":"GO:0140493"}


id: GO:1990735
data:
  {"annotated_genes":["SJAG_01756"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113373],"is_not":false,"summary":null,"term":"GO:1990735"}]},"cv_name":"biological_process","definition":"Any process in which a gamma-tubulin complex is transported to, or maintained in, a specific location at a mitotic spindle pole body.","definition_xrefs":["GOC:dos","GOC:mah","PMID:11080156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gamma-tubulin complex localization","termid":"GO:0033566"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01756":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"gamma-tubulin complex localization to mitotic spindle pole body","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"establishment and maintenance of gamma-tubulin complex localization to mitotic spindle pole body","type":"exact"},{"name":"gamma-tubulin complex localisation to mitotic spindle pole body","type":"exact"},{"name":"gamma-tubulin complex localization to mitotic SPB","type":"exact"}],"termid":"GO:1990735","terms_by_termid":{"GO:1990735":null}}


id: PBO:0039989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 3","termid":"PBO:0039989"}


id: PBO:0045127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dmx like 1","termid":"PBO:0045127"}


id: PBO:0078334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon CTC) 1-6","termid":"PBO:0078334"}


id: PBO:0059182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanoregulin","termid":"PBO:0059182"}


id: PBO:0109454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LHX8 antisense RNA 1","termid":"PBO:0109454"}


id: GO:0019086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transcription of the final group of viral genes of the viral life cycle, following middle transcription, or where middle transcription doesn't occur, following early transcription. Involves the transcription of genes encoding structural proteins.","definition_xrefs":["GOC:bf","GOC:jh2","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral transcription","termid":"GO:0019083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"late viral transcription","synonyms":[{"name":"late viral mRNA transcription","type":"related"}],"termid":"GO:0019086"}


id: PBO:0000519
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.10.1","termid":"PBO:0000519"}


id: FYPO:0006515
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which telomere length is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal telomere morphology","termid":"FYPO:0006512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal telomere length","termid":"FYPO:0006515"}


id: GO:0106153
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a histone in which a residue has been modified by phosphorylation.","definition_xrefs":["GOC:mah","PMID:20679485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone binding","termid":"GO:0042393"},{"relation_name":"is_a","term_name":"phosphorylation-dependent protein binding","termid":"GO:0140031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"phosphorylated histone binding","termid":"GO:0106153"}


id: PBO:0052442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 2","termid":"PBO:0052442"}


id: PBO:0080342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 106 pseudogene","termid":"PBO:0080342"}


id: PBO:0072444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 8","termid":"PBO:0072444"}


id: PBO:0038778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activin A receptor type 1C","termid":"PBO:0038778"}


id: PBO:0086348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTEN homolog with no demonstrated inositol lipid phosphatase activity; plays a role in normal sporulation; homolog of human tumor suppressor gene PTEN/MMAC1/TEP1 and fission yeast ptn1","termid":"PBO:0086348"}


id: PR:O13670
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein MTO1, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02812","PANTHER:PTHR11806:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein MTO1 homolog, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30B4.06c","secondary_identifiers":["UniProtKB:O13670"],"synonyms":[{"name":"Spom972h-MTO1","type":"exact"}],"termid":"PR:O13670"}


id: GO:0099033
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic recycling endosome membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of postsynaptic recycling endosome membrane (obsolete GO:0099033)","termid":"GO:0099033"}


id: PBO:0073300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 22","termid":"PBO:0073300"}


id: PBO:0032736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post-Golgi vesicle-mediated transport protein Avl9 (predicted)","termid":"PBO:0032736"}


id: GO:0032987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a protein-lipid complex into its constituent components.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex disassembly","termid":"GO:0032984"},{"relation_name":"is_a","term_name":"protein-lipid complex organization","termid":"GO:0071825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-lipid complex disassembly","termid":"GO:0032987"}


id: GO:0017056
data:
  {"annotated_genes":["SJAG_00375","SJAG_03300","SJAG_03299","SJAG_01834","SJAG_01374","SJAG_00962","SJAG_02757","SJAG_01013","SJAG_04148","SJAG_04017","SJAG_01185","SJAG_04645","SJAG_00093","SJAG_01584","SJAG_03182","SJAG_03593","SJAG_01065","SJAG_00471","SJAG_05243","SJAG_02210","SJAG_03986","SJAG_03729","SJAG_02274"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[85034,85048,86981,87746,89473,90038,91029,92188,96506,97246,99114,101511,102282,103910,106002,106578,109414,111062,111160,111689,111722,112605,112648],"is_not":false,"summary":null,"term":"GO:0017056"}]},"cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of the nuclear pore complex, a protein-lined channel in the nuclear envelope that allows the transfer of macromolecules.","definition_xrefs":["GOC:mah","PMID:25802992"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural molecule activity","termid":"GO:0005198"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00093":null,"SJAG_00375":null,"SJAG_00471":null,"SJAG_00962":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01185":null,"SJAG_01374":null,"SJAG_01584":null,"SJAG_01834":null,"SJAG_02210":null,"SJAG_02274":null,"SJAG_02757":null,"SJAG_03182":null,"SJAG_03299":null,"SJAG_03300":null,"SJAG_03593":null,"SJAG_03729":null,"SJAG_03986":null,"SJAG_04017":null,"SJAG_04148":null,"SJAG_04645":null,"SJAG_05243":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005198"}],"interesting_parent_ids":["GO:0003674","GO:0005198"],"is_obsolete":false,"name":"structural constituent of nuclear pore","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5578744","Reactome:R-HSA-6783483","Reactome:R-HSA-5661474","Reactome:R-HSA-1176059","Reactome:R-HSA-5252041","GO:0005487","Reactome:R-HSA-192627","Reactome:R-HSA-192925","Reactome:R-HSA-170796"],"synonyms":[{"name":"nuclear pore activity","type":"related"},{"name":"nucleocytoplasmic transporter activity","type":"exact"}],"termid":"GO:0017056","terms_by_termid":{"GO:0017056":null}}


id: PBO:0018172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Smc5-6 complex ubiquitin-protein ligase E3 subunit 1","termid":"PBO:0018172"}


id: PBO:0088715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated WD repeat protein Utp4","termid":"PBO:0088715"}


id: PR:O14400
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glycerol-3-phosphate dehydrogenase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04848","PANTHER:PTHR11985:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1223.03c","secondary_identifiers":["UniProtKB:O14400"],"synonyms":[{"name":"GPD-M (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GPDH-M (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GPD2","type":"exact"}],"termid":"PR:O14400"}


id: GO:0048868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a pollen tube over time, from its initial formation to a mature structure.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"pollination","termid":"GO:0009856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pollen tube development","termid":"GO:0048868"}


id: PR:000027621
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcription factor zip1 ubiquitinated form in Schizosaccharomyces pombe. Ubiquitinated by SCF(Pof1). Example: UniProtKB:Q10424-1, MOD:01148.","definition_xrefs":["PomBase:MAH","PMID:15660136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription factor zip1","termid":"PR:000027614"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor zip1 ubiquitinated form (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC25G10.03","synonyms":[{"name":"Spom-zip1/UbiqLys+","type":"exact"}],"termid":"PR:000027621"}


id: FYPO:0002548
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 4'-phosphopantothenate measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular 4'-phosphopantothenate level","synonyms":[{"name":"increased 4'-phosphopantothenate accumulation","type":"related"},{"name":"increased cellular 4'-phosphopantothenate level during mitotic cell cycle","type":"related"},{"name":"increased cellular 4'-phosphopantothenate level during vegetative growth","type":"exact"}],"termid":"FYPO:0002548"}


id: GO:0016027
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex of proteins that are involved in phototransduction and attached to the transient receptor potential (TRP) channel. The protein connections are mediated through inaD.","definition_xrefs":["PMID:9796815","PMID:9010208","GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"rhabdomere","termid":"GO:0016028"},{"relation_name":"part_of","term_name":"extrinsic component of plasma membrane","termid":"GO:0019897"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"inaD signaling complex","synonyms":[{"name":"inaD signalling complex","type":"exact"}],"termid":"GO:0016027"}


id: FYECO:0000212
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ethanol was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ethanol","termid":"FYECO:0000212"}


id: GO:0010683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving tricyclic triterpenoid compounds, terpenoids with six isoprene units and 3 rings.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triterpenoid metabolic process","termid":"GO:0006722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"tricyclic triterpenoid metabolic process","synonyms":[{"name":"tricyclic triterpenoid metabolism","type":"exact"}],"termid":"GO:0010683"}


id: PR:O14289
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- leu2 gene.","definition_xrefs":["UniProtKB:O14289","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-isopropylmalate dehydratase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9E9.03","synonyms":[{"name":"IPMI (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-leu2","type":"exact"},{"name":"alpha-IPM isomerase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"isopropylmalate isomerase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14289"}


id: PBO:0027834
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_septum_edging_catabolic_process","termid":"PBO:0027834"}


id: PBO:0063166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAX3 and PAX7 binding protein 1","termid":"PBO:0063166"}


id: PBO:0087019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribose-5-phosphate ketol-isomerase; catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway; participates in pyridoxine biosynthesis","termid":"PBO:0087019"}


id: PBO:0029830
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_curved_stubby_vegetative_cell_population_(obsolete_FYPO:0002407)","termid":"PBO:0029830"}


id: GO:0047072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-dihydroxybenzoate + O2 = 2-carboxy-cis,cis-muconate + 2 H+.","definition_xrefs":["EC:1.13.11.28","RHEA:15369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"2,3-dihydroxybenzoate 2,3-dioxygenase activity","secondary_identifiers":["KEGG_REACTION:R01506","MetaCyc:1.13.11.28-RXN"],"synonyms":[{"name":"2,3-dihydroxybenzoate 2,3-oxygenase activity","type":"related"},{"name":"2,3-dihydroxybenzoate:oxygen 2,3-oxidoreductase (decyclizing)","type":"related"}],"termid":"GO:0047072"}


id: GO:0002558
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An inflammatory response driven by antigen recognition by antibodies bound to Fc receptors on mast cells, occurring within minutes after exposure of a sensitized individual to the antigen, and leading to the release of a variety of inflammatory mediators such as histamines.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mast cell mediated immunity","termid":"GO:0002448"},{"relation_name":"is_a","term_name":"type I hypersensitivity","termid":"GO:0016068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"type I hypersensitivity mediated by mast cells","termid":"GO:0002558"}


id: GO:0007316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA localization","termid":"GO:0006403"},{"relation_name":"part_of","term_name":"pole plasm assembly","termid":"GO:0007315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"pole plasm RNA localization","secondary_identifiers":["GO:0048116"],"synonyms":[{"name":"establishment and maintenance of pole plasm RNA localization","type":"exact"},{"name":"oocyte pole plasm RNA localization","type":"exact"},{"name":"pole plasm RNA localisation","type":"exact"}],"termid":"GO:0007316"}


id: MOD:00954
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two residues with a covalent bond and the loss of water.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues","termid":"MOD:00033"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked residues with loss of water","termid":"MOD:00954"}


id: PBO:0054193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1568","termid":"PBO:0054193"}


id: FYPO:0002295
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. An inviable phenotype in which a cell undergoes mitotic catastrophe (i.e. enters mitosis prematurely and with defective chromosome segregation), entering mitosis when longer than wild type, and then septates to give rise to a cut phenotype. In a cut phenotype, a cell undergoes septation despite abnormal chromosome segregation.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete mitotic catastrophe with cut, elongated cell during cellular response to hydroxyurea (obsolete FYPO:0002295)","synonyms":[{"name":"cut with mitotic catastrophe, elongated cell during cellular response to hydroxyurea","type":"exact"},{"name":"mitotic catastrophe with cut, elongated cell during cellular response to HU","type":"exact"},{"name":"mitotic catastrophe with cut, elongated cell during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"mitotic catastrophe with cut, elongated cell during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"mitotic catastrophe with cut, long cell","type":"exact"}],"termid":"FYPO:0002295"}


id: GO:0070756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-35 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-35 production","termid":"GO:0070754"},{"relation_name":"positively_regulates","term_name":"interleukin-35 production","termid":"GO:0070753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-35 production","secondary_identifiers":["GO:0070752"],"synonyms":[{"name":"activation of interleukin-35 production","type":"narrow"},{"name":"positive regulation of IL-35 production","type":"exact"},{"name":"positive regulation of interleukin-35 biosynthetic process","type":"narrow"},{"name":"stimulation of interleukin-35 production","type":"narrow"},{"name":"up regulation of interleukin-35 production","type":"exact"},{"name":"up-regulation of interleukin-35 production","type":"exact"},{"name":"upregulation of interleukin-35 production","type":"exact"}],"termid":"GO:0070756"}


id: GO:0002460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An immune response mediated by lymphocytes expressing specific receptors for antigen produced through a somatic diversification process that includes somatic recombination of germline gene segments encoding immunoglobulin superfamily domains. Recombined receptors for antigen encoded by immunoglobulin superfamily domains include T cell receptors and immunoglobulins (antibodies) produced by B cells. The first encounter with antigen elicits a primary immune response that is slow and not of great magnitude. T and B cells selected by antigen become activated and undergo clonal expansion. A fraction of antigen-reactive T and B cells become memory cells, whereas others differentiate into effector cells. The memory cells generated during the primary response enable a much faster and stronger secondary immune response upon subsequent exposures to the same antigen (immunological memory). An example of this is the adaptive immune response found in Mus musculus.","definition_xrefs":["GOC:add","ISBN:0781735149","GOC:mtg_sensu","ISBN:1405196831"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adaptive immune response","termid":"GO:0002250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002460"}


id: PBO:0067888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 190","termid":"PBO:0067888"}


id: PBO:0034214
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-indirectly_activates","termid":"PBO:0034214"}


id: GO:0046283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins that occur in plants. They are responsible from most of the scarlet, purple, mauve and blue coloring in higher plants, especially of flowers.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavonoid metabolic process","termid":"GO:0009812"},{"relation_name":"is_a","term_name":"pigment metabolic process","termid":"GO:0042440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anthocyanin-containing compound metabolic process","synonyms":[{"name":"anthocyanin metabolic process","type":"exact"},{"name":"anthocyanin metabolism","type":"exact"}],"termid":"GO:0046283"}


id: GO:1902810
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of skeletal muscle fiber differentiation.","definition_xrefs":["GOC:TermGenie","GOC:mr","GO_REF:0000058","PMID:17879321"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of myotube differentiation","termid":"GO:0010832"},{"relation_name":"is_a","term_name":"regulation of skeletal muscle fiber differentiation","termid":"GO:1902809"},{"relation_name":"is_a","term_name":"negative regulation of skeletal muscle cell differentiation","termid":"GO:2001015"},{"relation_name":"negatively_regulates","term_name":"skeletal muscle fiber differentiation","termid":"GO:0098528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of skeletal muscle fiber differentiation","synonyms":[{"name":"down regulation of skeletal muscle fiber differentiation","type":"exact"},{"name":"down-regulation of skeletal muscle fiber differentiation","type":"exact"},{"name":"downregulation of skeletal muscle fiber differentiation","type":"exact"},{"name":"inhibition of skeletal muscle fiber differentiation","type":"narrow"}],"termid":"GO:1902810"}


id: PBO:0049266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gasdermin E","termid":"PBO:0049266"}


id: GO:0048243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of norepinephrine by a cell. Norepinephrine is a catecholamine and it acts as a hormone and as a neurotransmitter of most of the sympathetic nervous system.","definition_xrefs":["GOC:ef","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"norepinephrine transport","termid":"GO:0015874"},{"relation_name":"is_a","term_name":"signal release","termid":"GO:0023061"},{"relation_name":"is_a","term_name":"catecholamine secretion","termid":"GO:0050432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"norepinephrine secretion","synonyms":[{"name":"noradrenaline secretion","type":"exact"}],"termid":"GO:0048243"}


id: FYPO:0003074
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to pericentric heterochromatin is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to centromere during vegetative growth","termid":"FYPO:0000634"},{"relation_name":"is_a","term_name":"abolished protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001132"},{"relation_name":"is_a","term_name":"abnormal protein localization to pericentric heterochromatin","termid":"FYPO:0007648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to pericentric heterochromatin during vegetative growth","synonyms":[{"name":"abolished protein localisation to centromeric heterochromatin during vegetative growth","type":"exact"},{"name":"abolished protein localisation to pericentric heterochromatin during vegetative growth","type":"exact"},{"name":"abolished protein localization to centric heterochromatin during vegetative growth","type":"exact"},{"name":"abolished protein localization to centromeric heterochromatin during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to nuclear centromeric heterochromatin","type":"exact"},{"name":"abolished protein localization to pericentric heterochromatin during mitotic cell cycle during mitotic cell cycle during mitotic cell cycle","type":"related"},{"name":"protein localization to centromeric heterochromatin abolished during vegetative growth","type":"exact"},{"name":"protein localization to pericentric heterochromatin abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0003074"}


id: MOD:01383
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-cysteine residues and oxidizes a sulfur to form L-cystine S-oxide.","definition_xrefs":["RESID:AA0457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disulfide crosslinked residues","termid":"MOD:00689"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-cystine S-oxide","synonyms":[{"name":"(2R)-2-amino-3-[([(2R)-2-amino-2-carboxyethyl]sulfanyl)sulfinyl]propanoic acid","type":"exact"},{"name":"CROSSLNK S-cysteinyl 3-(oxidosulfanyl)alanine (Cys-Cys)","type":"exact"},{"name":"L-cystine S-oxide","type":"exact"},{"name":"S-[(2R)-2-amino-3-oxopropyl] (2R)-2-amino-3-oxopropane-1-sulfinothioate","type":"exact"},{"name":"S-cysteinyl 3-(oxidosulfanyl)alanine","type":"exact"},{"name":"cystine sulfoxide","type":"exact"}],"termid":"MOD:01383"}


id: PBO:0079008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Thr (anticodon TGT) 2-1","termid":"PBO:0079008"}


id: PBO:0085940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; mutant is defective in directing meiotic recombination events to homologous chromatids; the authentic, non-tagged protein is detected in highly purified mitochondria and is phosphorylated","termid":"PBO:0085940"}


id: GO:0000947
data:
  {"annotated_genes":["SJAG_03743","SJAG_04842","SJAG_02734"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84539,93333,93334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000949"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving the catabolism of amino acids to produce alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols.","definition_xrefs":["GOC:krc","PMID:18281432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid catabolic process via Ehrlich pathway","termid":"GO:0000955"},{"relation_name":"is_a","term_name":"alcohol biosynthetic process","termid":"GO:0046165"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02734":null,"SJAG_03743":null,"SJAG_04842":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"amino acid catabolic process to alcohol via Ehrlich pathway","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000947","terms_by_termid":{"GO:0000949":null}}


id: PBO:0091967
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cut Eight suppressing Kinase","termid":"PBO:0091967"}


id: PBO:0041007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLOC-1 related complex subunit 8","termid":"PBO:0041007"}


id: PBO:0078968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon AGA) 7-1","termid":"PBO:0078968"}


id: PBO:0017999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein Nop4 (predicted)","termid":"PBO:0017999"}


id: GO:2000099
data:
  {"annotated_genes":["SJAG_04461","SJAG_03581","SJAG_03048","SJAG_00845","SJAG_00596","SJAG_03637","SJAG_01799","SJAG_00661","SJAG_00236","SJAG_02022","SJAG_00333"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89785,98491],"is_not":false,"summary":null,"term":"GO:2000099"},{"annotations":[96263,89784,101480,99822],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000247"},{"annotations":[99823],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061361"},{"annotations":[90630,101483,114971,91721,96266,100657,109217,87163],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000100"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of establishment or maintenance of bipolar cell polarity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of cell polarity","termid":"GO:0032878"},{"relation_name":"regulates","term_name":"establishment or maintenance of bipolar cell polarity","termid":"GO:0061245"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00236":null,"SJAG_00333":null,"SJAG_00596":null,"SJAG_00661":null,"SJAG_00845":null,"SJAG_01799":null,"SJAG_02022":null,"SJAG_03048":null,"SJAG_03581":null,"SJAG_03637":null,"SJAG_04461":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007163"],"is_obsolete":false,"name":"regulation of establishment or maintenance of bipolar cell polarity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:2000099","terms_by_termid":{"GO:0061361":null,"GO:2000099":null,"GO:2000100":null,"GO:2000247":null}}


id: GO:0010603
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body.","definition_xrefs":["GOC:dph","GOC:krc","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle assembly","termid":"GO:1902115"},{"relation_name":"regulates","term_name":"P-body assembly","termid":"GO:0033962"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"regulation of cytoplasmic mRNA processing body assembly","termid":"GO:0010603"}


id: PBO:0075411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm acrosome associated 7","termid":"PBO:0075411"}


id: PR:P87171
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- prs5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87171"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribose-phosphate pyrophosphokinase 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3D6.06c","synonyms":[{"name":"Spom972h-prs5","type":"exact"},{"name":"phosphoribosyl pyrophosphate synthase 5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87171"}


id: GO:0030496
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical entity","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"midbody","secondary_identifiers":["Wikipedia:Midbody_(cell_biology)"],"termid":"GO:0030496"}


id: PBO:0064065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 99","termid":"PBO:0064065"}


id: PBO:0063291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin gamma subfamily B, 5","termid":"PBO:0063291"}


id: PBO:0086300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in translation; forms a complex with Gir2p; has similarity to mammalian developmentally regulated GTP-binding protein","termid":"PBO:0086300"}


id: FYPO:0001518
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of diethyl maleate than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002682","FYPO:0000003","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"resistance to diethyl maleate","synonyms":[{"name":"resistance to DEM","type":"exact"},{"name":"resistance to diethyl maleate during mitotic cell cycle","type":"related"},{"name":"resistance to diethyl maleate during vegetative growth","type":"exact"},{"name":"resistant to diethyl maleate","type":"exact"}],"termid":"FYPO:0001518"}


id: PBO:0084610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a protein; YGL210W-A was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YGL211W","termid":"PBO:0084610"}


id: MOD:01173
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to N-asparaginyl-glycosylsphingolipidinositolethanolamine.","definition_xrefs":["PubMed:12626404","RESID:AA0425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylsphingolipidinositolated residue","termid":"MOD:00466"},{"relation_name":"is_a","term_name":"modified L-asparagine residue","termid":"MOD:00903"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-asparaginyl-glycosylsphingolipidinositolethanolamine","synonyms":[{"name":"GSIAsn","type":"exact"},{"name":"LIPID GPI-like-anchor amidated asparagine","type":"exact"},{"name":"N-asparaginyl-glycosylsphingolipidinositolethanolamine","type":"exact"}],"termid":"MOD:01173"}


id: PBO:0045913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EF-hand calcium binding domain 9","termid":"PBO:0045913"}


id: PBO:0073443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor proline and glutamine rich pseudogene 1","termid":"PBO:0073443"}


id: GO:0032157
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A contractile ring, i.e. a cytoskeletal structure composed of actin filaments and myosin, that forms beneath the plasma membrane of the prospore envelope in meiotic cells in preparation for completing cytokinesis.","definition_xrefs":["GOC:krc","PMID:16009555"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic actomyosin contractile ring","termid":"GO:0110086"},{"relation_name":"part_of","term_name":"ascospore-type prospore","termid":"GO:0042764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0070938"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0015629","GO:0005575","GO:0070938","GO:0005938"],"is_obsolete":false,"name":"prospore contractile ring","synonyms":[{"name":"actomyosin ring","type":"related"},{"name":"cytokinetic ring","type":"related"},{"name":"meiotic contractile ring","type":"related"}],"termid":"GO:0032157"}


id: GO:1904347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of small intestine smooth muscle contraction.","definition_xrefs":["PMID:11991626","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gastro-intestinal system smooth muscle contraction","termid":"GO:1904304"},{"relation_name":"regulates","term_name":"small intestine smooth muscle contraction","termid":"GO:1990770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of small intestine smooth muscle contraction","termid":"GO:1904347"}


id: GO:0031710
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a neuromedin B receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bombesin receptor binding","termid":"GO:0031705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"neuromedin B receptor binding","synonyms":[{"name":"neuromedin B receptor ligand","type":"narrow"}],"termid":"GO:0031710"}


id: PATO:0001430
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions.","definition_xrefs":["chemicool:chemicool"],"direct_ancestors":[{"relation_name":"is_a","term_name":"medium acidity","termid":"PATO:0001428"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alkaline","termid":"PATO:0001430"}


id: PBO:0044040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroitin sulfate proteoglycan 4 pseudogene 12","termid":"PBO:0044040"}


id: GO:0141151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of nitric oxide-cGMP mediated signal transduction.","definition_xrefs":["PMID:35931019"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nitric oxide mediated signal transduction","termid":"GO:0010751"},{"relation_name":"is_a","term_name":"negative regulation of cGMP-mediated signaling","termid":"GO:0010754"},{"relation_name":"is_a","term_name":"regulation of nitric oxide-cGMP mediated signal transduction","termid":"GO:0141149"},{"relation_name":"negatively_regulates","term_name":"nitric oxide-cGMP-mediated signaling","termid":"GO:0038060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of nitric oxide-cGMP mediated signal transduction","termid":"GO:0141151"}


id: PBO:0043777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase A3","termid":"PBO:0043777"}


id: PBO:0004952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper amine oxidase-like protein Cao2","termid":"PBO:0004952"}


id: PR:Q9P7R8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gea1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7R8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C211.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC211.03c","synonyms":[{"name":"Spom972h-gea1","type":"exact"}],"termid":"PR:Q9P7R8"}


id: PBO:0003453
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.5.1.15","termid":"PBO:0003453"}


id: GO:0008401
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the conversion of retinoic acid to 4-hydroxy-retinoic acid.","definition_xrefs":["PMID:9250660","PMID:19519282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"retinoic acid 4-hydroxylase activity","secondary_identifiers":["Reactome:R-HSA-211923","Reactome:R-HSA-5602050","Reactome:R-HSA-5602063","Reactome:R-HSA-211874","Reactome:R-HSA-212007","Reactome:R-HSA-5362525"],"synonyms":[{"name":"cytochrome P450 CYP261","type":"narrow"}],"termid":"GO:0008401"}


id: PBO:0005291
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter contains CuSE","termid":"PBO:0005291"}


id: MOD:00037
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine  residue to one of the diastereomeric 5-hydroxy-L-lysine  residues.","definition_xrefs":["ChEBI:60175","PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated lysine","termid":"MOD:01047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-hydroxy-L-lysine","synonyms":[{"name":"5-hydroxylated L-lysine","type":"exact"},{"name":"5HyLys","type":"exact"}],"termid":"MOD:00037"}


id: GO:0010574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of vascular endothelial growth factor.","definition_xrefs":["GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"vascular endothelial growth factor production","termid":"GO:0010573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of vascular endothelial growth factor production","termid":"GO:0010574"}


id: GO:0042483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the formation and development of a tooth or teeth.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of odontogenesis","termid":"GO:0042481"},{"relation_name":"is_a","term_name":"negative regulation of animal organ morphogenesis","termid":"GO:0110111"},{"relation_name":"negatively_regulates","term_name":"odontogenesis","termid":"GO:0042476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of odontogenesis","secondary_identifiers":["GO:0042486"],"synonyms":[{"name":"down regulation of odontogenesis","type":"exact"},{"name":"down-regulation of odontogenesis","type":"exact"},{"name":"downregulation of odontogenesis","type":"exact"},{"name":"inhibition of odontogenesis","type":"narrow"},{"name":"negative regulation of odontogenesis of calcareous or chitinous tooth","type":"narrow"},{"name":"negative regulation of tooth development","type":"exact"}],"termid":"GO:0042483"}


id: MOD:01566
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the O4'-hydrogen atom of a tyrosine residue with the Applied Biosystems iTRAQ8plex-118 reporter+balance group.","definition_xrefs":["Unimod:731#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"iTRAQ8plex-118 reporter+balance reagent acylated residue","termid":"MOD:01563"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00649"}],"interesting_parent_ids":["MOD:00649"],"is_obsolete":false,"name":"iTRAQ8plex-118 reporter+balance reagent O4'-acylated tyrosine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Accurate mass for 115, 118, 119 & 121","type":"related"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"iTRAQ8plex:13C(6)15N(2)","type":"related"}],"termid":"MOD:01566"}


id: GO:1900143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of oligodendrocyte apoptotic process.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of glial cell apoptotic process","termid":"GO:0034352"},{"relation_name":"is_a","term_name":"regulation of oligodendrocyte apoptotic process","termid":"GO:1900141"},{"relation_name":"positively_regulates","term_name":"oligodendrocyte apoptotic process","termid":"GO:0097252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of oligodendrocyte apoptotic process","synonyms":[{"name":"activation of oligodendrocyte apoptosis","type":"narrow"},{"name":"activation of oligodendrocyte apoptotic process","type":"narrow"},{"name":"positive regulation of oligodendrocyte apoptosis","type":"narrow"},{"name":"up regulation of oligodendrocyte apoptosis","type":"narrow"},{"name":"up regulation of oligodendrocyte apoptotic process","type":"exact"},{"name":"up-regulation of oligodendrocyte apoptosis","type":"narrow"},{"name":"up-regulation of oligodendrocyte apoptotic process","type":"exact"},{"name":"upregulation of oligodendrocyte apoptosis","type":"narrow"},{"name":"upregulation of oligodendrocyte apoptotic process","type":"exact"}],"termid":"GO:1900143"}


id: GO:1901230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of non-canonical Wnt signaling pathway via JNK cascade.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of non-canonical Wnt signaling pathway via JNK cascade (obsolete GO:1901230)","synonyms":[{"name":"down regulation of non-canonical Wnt receptor signaling pathway via JNK cascade","type":"exact"},{"name":"down regulation of non-canonical Wnt receptor signalling pathway via JNK cascade","type":"exact"},{"name":"down-regulation of non-canonical Wnt receptor signaling pathway via JNK cascade","type":"exact"},{"name":"down-regulation of non-canonical Wnt receptor signalling pathway via JNK cascade","type":"exact"},{"name":"downregulation of non-canonical Wnt receptor signaling pathway via JNK cascade","type":"exact"},{"name":"downregulation of non-canonical Wnt receptor signalling pathway via JNK cascade","type":"exact"},{"name":"inhibition of non-canonical Wnt receptor signaling pathway via JNK cascade","type":"narrow"},{"name":"inhibition of non-canonical Wnt receptor signalling pathway via JNK cascade","type":"narrow"},{"name":"negative regulation of non-canonical Wnt receptor signaling pathway via JNK cascade","type":"exact"},{"name":"negative regulation of non-canonical Wnt receptor signalling pathway via JNK cascade","type":"exact"},{"name":"negative regulation of non-canonical Wnt-activated signaling pathway via JNK cascade","type":"related"}],"termid":"GO:1901230"}


id: FYPO:0003182
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which sister chromatids are not segregated equally to the two spindle poles in the second meiotic nuclear division.","definition_xrefs":["PomBase:mah","PMID:10440376"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unequal meiotic chromosome segregation","termid":"FYPO:0000925"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal meiotic sister chromatid segregation","termid":"FYPO:0005509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"sister chromatid nondisjunction at meiosis II","secondary_identifiers":["FYPO:0006416","FYPO:0003605"],"synonyms":[{"name":"abnormal chromosome disjunction during meiosis II","type":"exact"},{"name":"abnormal meiotic sister chromatid disjunction","type":"exact"},{"name":"abolished meiotic sister chromatid separation","type":"related"},{"name":"meiosis II nondisjunction","type":"related"},{"name":"nondisjunction at meiosis II","type":"exact"},{"name":"nondisjunction of sister chromatids in meiosis II","type":"exact"},{"name":"unequal meiotic chromosome segregation during meiosis II","type":"exact"},{"name":"unequal meiotic sister chromatid segregation in meiosis II","type":"exact"}],"termid":"FYPO:0003182"}


id: GO:0009671
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nitrate(out) + H+(out) = nitrate(in) + H+(in).","definition_xrefs":["GOC:mah","PMID:10066586","PMID:1990981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"high-affinity secondary active nitrite transmembrane transporter activity","termid":"GO:0015513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"nitrate:proton symporter activity","synonyms":[{"name":"nitrate(chlorate):hydrogen symporter activity","type":"exact"},{"name":"nitrate(chlorate):proton symporter activity","type":"exact"},{"name":"nitrate:hydrogen symporter activity","type":"exact"}],"termid":"GO:0009671"}


id: GO:0043083
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The narrow gap that separates the presynaptic and postsynaptic membranes, into which neurotransmitter is released.","definition_xrefs":["PMID:30784960","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular region","termid":"GO:0005576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005575","GO:0005576"],"is_obsolete":false,"name":"synaptic cleft","secondary_identifiers":["NIF_Subcellular:sao243541954"],"termid":"GO:0043083"}


id: PBO:0054443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1840","termid":"PBO:0054443"}


id: GO:0102167
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H2O + an N-acetyl-alpha-D-glucosaminyl-L-serine-[glycoprotein] = N-acetyl-alpha-D-glucosaminide + a [protein]-L-serine.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine O-N-acetyl-alpha-D-glucosaminase activity (obsolete GO:0102167)","termid":"GO:0102167"}


id: PBO:0049916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hes related family bHLH transcription factor with YRPW motif 1","termid":"PBO:0049916"}


id: GO:0030151
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a molybdenum ion (Mo).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transition metal ion binding","termid":"GO:0046914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0046872"}],"interesting_parent_ids":["GO:0003674","GO:0046872","GO:0005488"],"is_obsolete":false,"name":"molybdenum ion binding","synonyms":[{"name":"Mo ion binding","type":"exact"},{"name":"molybdenum binding","type":"exact"}],"termid":"GO:0030151"}


id: GO:0001900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates or increases the frequency, rate or extent of cytolysis by that organism of cells in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:dph","GOC:add","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cytolysis by symbiont of host cells (obsolete GO:0001900)","synonyms":[{"name":"activation by symbiont of cytolysis of host cells","type":"narrow"},{"name":"positive regulation by symbiont of cytolysis of host cells","type":"exact"},{"name":"stimulation by symbiont of cytolysis of host cells","type":"narrow"},{"name":"up regulation by symbiont of cytolysis of host cells","type":"exact"},{"name":"up-regulation by symbiont of cytolysis of host cells","type":"exact"},{"name":"upregulation by symbiont of cytolysis of host cells","type":"exact"}],"termid":"GO:0001900"}


id: GO:1904847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell chemotaxis to fibroblast growth factor.","definition_xrefs":["GOC:rph","GOC:TermGenie","PMID:23233752","GOC:BHF","GO_REF:0000058","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell migration","termid":"GO:0030334"},{"relation_name":"is_a","term_name":"regulation of chemotaxis","termid":"GO:0050920"},{"relation_name":"is_a","term_name":"regulation of cellular response to growth factor stimulus","termid":"GO:0090287"},{"relation_name":"regulates","term_name":"cell chemotaxis to fibroblast growth factor","termid":"GO:0035766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell chemotaxis to fibroblast growth factor","termid":"GO:1904847"}


id: GO:0098517
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which low humidity is detected and converted into a molecular signal.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of humidity","termid":"GO:0098513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of low humidity","termid":"GO:0098517"}


id: GO:0062111
data:
  {"annotated_genes":["SJAG_01803","SJAG_03528","SJAG_00328","SJAG_01078"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[86480,100437],"is_not":false,"summary":null,"term":"GO:0062111"},{"annotations":[89814,89813],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140209"},{"annotations":[100436,86479],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904257"}]},"cv_name":"biological_process","definition":"The directed import of zinc(2+) from the cytosol, across an organelle membrane, into the organelle.","definition_xrefs":["PMID:29529046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zinc ion transmembrane transport","termid":"GO:0071577"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00328":null,"SJAG_01078":null,"SJAG_01803":null,"SJAG_03528":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"zinc ion import into organelle","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0062111","terms_by_termid":{"GO:0062111":null,"GO:0140209":null,"GO:1904257":null}}


id: PBO:0087328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sorting factor, central regulator of spatial protein quality control; physically and functionally interacts with chaperones to promote sorting and deposition of misfolded proteins into cytosolic compartments; involved in destabilization of [URE3] prions; CUR1 has a paralog, BTN2, that arose from the whole genome duplication","termid":"PBO:0087328"}


id: PBO:0084119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Heme a synthase; required for the hydroxylation of heme O to form heme A, an essential prosthetic group for cytochrome c oxidase; oligomerization is required for function","termid":"PBO:0084119"}


id: GO:0071689
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in striated muscle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament organization","termid":"GO:0007015"},{"relation_name":"part_of","term_name":"myofibril assembly","termid":"GO:0030239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0007010","GO:0030036","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"muscle thin filament assembly","termid":"GO:0071689"}


id: GO:0016963
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Interaction with the alpha-2 macroglobulin receptor and glycoprotein gp330 forming a complex with the alpha-2 macroglobulin receptor light and heavy chains.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete alpha-2 macroglobulin receptor-associated protein activity (obsolete GO:0016963)","synonyms":[{"name":"alpha-2 macroglobulin receptor-associated protein activity","type":"exact"}],"termid":"GO:0016963"}


id: PBO:0079477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TWSG1 divergent transcript","termid":"PBO:0079477"}


id: PBO:0065147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protamine 3","termid":"PBO:0065147"}


id: MOD:01229
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-histidine residue to an L-iodohistidine.","definition_xrefs":["PubMed:15627961","Unimod:129#H","PubMed:2026710"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoiodinated residue","termid":"MOD:00500"},{"relation_name":"is_a","term_name":"halogenated histidine","termid":"MOD:01049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-iodohistidine","synonyms":[{"name":"I1His","type":"exact"},{"name":"Iodination","type":"related"},{"name":"Iodo","type":"related"}],"termid":"MOD:01229"}


id: GO:0047050
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-2-hydroxystearate + NAD+ = 2-oxostearate + H+ + NADH.","definition_xrefs":["EC:1.1.1.99","RHEA:11384"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"(S)-2-hydroxy-fatty acid dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R03022","MetaCyc:1.1.1.99-RXN"],"synonyms":[{"name":"(S)-2-hydroxy-fatty-acid dehydrogenase activity","type":"exact"},{"name":"(S)-2-hydroxystearate:NAD+ oxidoreductase activity","type":"related"},{"name":"2-hydroxy fatty acid oxidase","type":"broad"},{"name":"L-2-hydroxy fatty acid dehydrogenase activity","type":"related"},{"name":"dehydrogenase, L-2-hydroxy fatty acid","type":"related"}],"termid":"GO:0047050"}


id: PBO:0087198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R-SNARE protein; assembles into SNARE complex with Bet1p, Bos1p and Sed5p; cycles between the ER and Golgi complex; involved in anterograde and retrograde transport between the ER and Golgi; synaptobrevin homolog","termid":"PBO:0087198"}


id: GO:0000421
data:
  {"annotated_genes":["SJAG_02414","SJAG_06309"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[86107,109805],"is_not":false,"summary":null,"term":"GO:0000421"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding an autophagosome, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered.","definition_xrefs":["GOC:isa_complete","GOC:autophagy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar membrane","termid":"GO:0005774"},{"relation_name":"part_of","term_name":"autophagosome","termid":"GO:0005776"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02414":null,"SJAG_06309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0005737","GO:0005773","GO:0005575"],"is_obsolete":false,"name":"autophagosome membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"autophagic vacuole membrane","type":"exact"}],"termid":"GO:0000421","terms_by_termid":{"GO:0000421":null}}


id: PBO:0040685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCAS2 pseudogene 3","termid":"PBO:0040685"}


id: PBO:0030536
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_processing","termid":"PBO:0030536"}


id: GO:0034896
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-formiminopyruvate + H2O = 3-formylpyruvate + HN3.","definition_xrefs":["UM-BBD_reactionID:r1400"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-formiminopyruvate hydrolase activity (obsolete GO:0034896)","termid":"GO:0034896"}


id: PR:O14224
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A rho GDP-dissociation inhibitor 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00535","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho GDP-dissociation inhibitor (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F12.06","secondary_identifiers":["UniProtKB:O14224"],"synonyms":[{"name":"Spom972h-ARHGDIG","type":"exact"},{"name":"rho GDI (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14224"}


id: GO:0047282
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dTDP-L-dihydrostreptose + streptidine 6-phosphate = O-(1->4)-alpha-L-dihydrostreptosyl-streptidine 6-phosphate + dTDP + H+.","definition_xrefs":["RHEA:24392","EC:2.4.2.27"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"dTDP-dihydrostreptose-streptidine-6-phosphate dihydrostreptosyltransferase activity","secondary_identifiers":["KEGG_REACTION:R04222","MetaCyc:2.4.2.27-RXN"],"synonyms":[{"name":"dTDP-L-dihydrostreptose:streptidine-6-phosphate dihydrostreptosyltransferase activity","type":"related"},{"name":"dTDPdihydrostreptose-streptidine-6-phosphate dihydrostreptosyltransferase activity","type":"related"},{"name":"thymidine diphosphodihydrostreptose-streptidine 6-phosphate dihydrostreptosyltransferase activity","type":"related"}],"termid":"GO:0047282"}


id: PBO:0066020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RANBP1 pseudogene 1","termid":"PBO:0066020"}


id: GO:0051493
data:
  {"annotated_genes":["SJAG_00845","SJAG_03086","SJAG_03655","SJAG_02566","SJAG_00521","SJAG_03048","SJAG_00661","SJAG_03936","SJAG_02592","SJAG_03455","SJAG_02332","SJAG_01821","SJAG_01774","SJAG_02366","SJAG_04479","SJAG_00244","SJAG_01320","SJAG_01805","SJAG_03581","SJAG_04522","SJAG_00610","SJAG_00082","SJAG_03631","SJAG_03486","SJAG_05000","SJAG_00333","SJAG_00514","SJAG_04100","SJAG_02684","SJAG_01894","SJAG_02700","SJAG_00424","SJAG_01826","SJAG_04461","SJAG_04597","SJAG_01993","SJAG_00279","SJAG_02392","SJAG_04666","SJAG_03637","SJAG_02045","SJAG_04464","SJAG_04982","SJAG_04776","SJAG_04312"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84292,110487,88349,94980],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051016"},{"annotations":[86904],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034316"},{"annotations":[98469],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903500"},{"annotations":[97943],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031117"},{"annotations":[90456,86031],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903501"},{"annotations":[90457,90627,109526,83573,106669],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903473"},{"annotations":[107589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110161"},{"annotations":[88732,85470,95535,111491,111519,85767,90461,112670,102804,98955,106251,89888,91913,88446],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032956"},{"annotations":[103751],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032231"},{"annotations":[97842,98848,85860,86708,101287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030833"},{"annotations":[111219,111492,99826,87164,101484,96268,109218],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070507"},{"annotations":[87413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031110"},{"annotations":[115626,90422,89852],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903499"},{"annotations":[107164],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901673"},{"annotations":[111220],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110162"},{"annotations":[85905],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060236"},{"annotations":[110490,93798],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042989"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle organization","termid":"GO:0033043"},{"relation_name":"regulates","term_name":"cytoskeleton organization","termid":"GO:0007010"}],"gene_count":45,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00244":null,"SJAG_00279":null,"SJAG_00333":null,"SJAG_00424":null,"SJAG_00514":null,"SJAG_00521":null,"SJAG_00610":null,"SJAG_00661":null,"SJAG_00845":null,"SJAG_01320":null,"SJAG_01774":null,"SJAG_01805":null,"SJAG_01821":null,"SJAG_01826":null,"SJAG_01894":null,"SJAG_01993":null,"SJAG_02045":null,"SJAG_02332":null,"SJAG_02366":null,"SJAG_02392":null,"SJAG_02566":null,"SJAG_02592":null,"SJAG_02684":null,"SJAG_02700":null,"SJAG_03048":null,"SJAG_03086":null,"SJAG_03455":null,"SJAG_03486":null,"SJAG_03581":null,"SJAG_03631":null,"SJAG_03637":null,"SJAG_03655":null,"SJAG_03936":null,"SJAG_04100":null,"SJAG_04312":null,"SJAG_04461":null,"SJAG_04464":null,"SJAG_04479":null,"SJAG_04522":null,"SJAG_04597":null,"SJAG_04666":null,"SJAG_04776":null,"SJAG_04982":null,"SJAG_05000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0008150"],"is_obsolete":false,"name":"regulation of cytoskeleton organization","references_by_uniquename":{"GO_REF:0000107":null,"PMID:32915139":null},"synonyms":[{"name":"regulation of cytoskeleton organisation","type":"exact"},{"name":"regulation of cytoskeleton organization and biogenesis","type":"related"}],"termid":"GO:0051493","terms_by_termid":{"GO:0030833":null,"GO:0031110":null,"GO:0031117":null,"GO:0032231":null,"GO:0032956":null,"GO:0034316":null,"GO:0042989":null,"GO:0051016":null,"GO:0060236":null,"GO:0070507":null,"GO:0110161":null,"GO:0110162":null,"GO:0120306":null,"GO:1901673":null,"GO:1903473":null,"GO:1903499":null,"GO:1903500":null,"GO:1903501":null}}


id: PR:P87061
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tea1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tip elongation aberrant protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1223.06","synonyms":[{"name":"Spom972h-tea1","type":"exact"},{"name":"altered polarity protein 8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"cell polarity protein tea1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87061"}


id: FYPO:0004634
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell during one or both meiotic nuclear divisions is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level","termid":"FYPO:0004083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein level during meiosis","synonyms":[{"name":"normal cellular protein level during meiosis","type":"exact"},{"name":"normal protein accumulation during meiosis","type":"related"},{"name":"normal protein level during meiotic nuclear division","type":"exact"}],"termid":"FYPO:0004634"}


id: PBO:0072639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA 3'-terminal phosphate cyclase","termid":"PBO:0072639"}


id: PBO:0078766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (ATT) 1-1","termid":"PBO:0078766"}


id: PBO:0090853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1688 family fungal conserved protein, implicated in uracil or riboflavin metabolism","termid":"PBO:0090853"}


id: PBO:0018072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioesterase superfamily protein","termid":"PBO:0018072"}


id: GO:0106349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The posttranscriptional addition of methyl groups to specific residues in an snRNA molecule.","definition_xrefs":["PMID:21823225"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA methylation","termid":"GO:0001510"},{"relation_name":"is_a","term_name":"snRNA modification","termid":"GO:0040031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016073"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0016073","GO:0010467"],"is_obsolete":false,"name":"snRNA methylation","termid":"GO:0106349"}


id: PR:Q10481
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial import inner membrane translocase subunit Tim13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01858","PRO:DNx","PANTHER:PTHR19338:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import inner membrane translocase subunit tim13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.09c","secondary_identifiers":["UniProtKB:Q10481"],"synonyms":[{"name":"Spom972h-TIMM13","type":"exact"}],"termid":"PR:Q10481"}


id: SO:0001662
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A TATA box core promoter of a gene transcribed by RNA polymerase III.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TATA_box","termid":"SO:0000174"},{"relation_name":"part_of","term_name":"RNApol_III_promoter","termid":"SO:0000171"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA_polymerase_III_TATA_box","synonyms":[{"name":"RNA polymerase III TATA box","type":"exact"}],"termid":"SO:0001662"}


id: PBO:0005559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U4/U6 x U5 tri-snRNP complex subunit (predicted)","termid":"PBO:0005559"}


id: PBO:0048330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 41","termid":"PBO:0048330"}


id: GO:0046322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of fatty acid oxidation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of fatty acid metabolic process","termid":"GO:0045922"},{"relation_name":"is_a","term_name":"regulation of fatty acid oxidation","termid":"GO:0046320"},{"relation_name":"negatively_regulates","term_name":"fatty acid oxidation","termid":"GO:0019395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"negative regulation of fatty acid oxidation","synonyms":[{"name":"down regulation of fatty acid oxidation","type":"exact"},{"name":"down-regulation of fatty acid oxidation","type":"exact"},{"name":"downregulation of fatty acid oxidation","type":"exact"},{"name":"inhibition of fatty acid oxidation","type":"narrow"}],"termid":"GO:0046322"}


id: PBO:0056843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B","termid":"PBO:0056843"}


id: GO:0097552
data:
  {"annotated_genes":["SJAG_05373"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[84580],"is_not":false,"summary":null,"term":"GO:0097552"}]},"cv_name":"biological_process","definition":"The repair of a double-strand break in mitochondrial DNA in which the broken DNA molecule is repaired using homologous sequences.","definition_xrefs":["PMID:22214610","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recombinational repair","termid":"GO:0000725"},{"relation_name":"is_a","term_name":"mitochondrial double-strand break repair","termid":"GO:0097551"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006310","GO:0006259","GO:0008150","GO:0006281"],"is_obsolete":false,"name":"mitochondrial double-strand break repair via homologous recombination","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mtDSB repair via homologous recombination","type":"exact"}],"termid":"GO:0097552","terms_by_termid":{"GO:0097552":null}}


id: GO:1900214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of apoptotic process involved in metanephric collecting duct development.","definition_xrefs":["GOC:mtg_kidney_jan10","PMID:17314325","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process involved in development","termid":"GO:1904748"},{"relation_name":"regulates","term_name":"apoptotic process involved in metanephric collecting duct development","termid":"GO:1900204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of apoptotic process involved in metanephric collecting duct development","synonyms":[{"name":"regulation of apoptosis of metanephric collecting duct development","type":"narrow"},{"name":"regulation of apoptotic cell death of metanephric collecting duct development","type":"exact"},{"name":"regulation of apoptotic process of metanephric collecting duct development","type":"exact"},{"name":"regulation of apoptotic program of metanephric collecting duct development","type":"narrow"},{"name":"regulation of apoptotic programmed cell death of metanephric collecting duct development","type":"exact"},{"name":"regulation of programmed cell death by apoptosis of metanephric collecting duct development","type":"exact"},{"name":"regulation of signaling (initiator) caspase activity of metanephric collecting duct development","type":"related"},{"name":"regulation of type I programmed cell death of metanephric collecting duct development","type":"narrow"}],"termid":"GO:1900214"}


id: PBO:0083796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein of unknown function; with orthologs in Ashbya gossypii and Candida albicans; similar to human ATXN10, mutations in which cause spinocerebellar ataxia type 10; codon usage corresponds to that observed for yeast genes expressed at low levels; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0083796"}


id: PBO:0091440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"esterase/lipase","termid":"PBO:0091440"}


id: PBO:0090914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Sak1","termid":"PBO:0090914"}


id: GO:0043971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 18 of the histone.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K18 acetylation (obsolete GO:0043971)","synonyms":[{"name":"histone H3 acetylation at K18","type":"exact"},{"name":"histone H3K18 acetylation","type":"exact"}],"termid":"GO:0043971"}


id: GO:0038065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by collagen binding to a cell surface receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:uh","GOC:bf","PMID:21568710"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"collagen-activated signaling pathway","synonyms":[{"name":"collagen-activated signalling pathway","type":"exact"}],"termid":"GO:0038065"}


id: GO:0046380
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylneuraminate metabolic process","termid":"GO:0006054"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"amino sugar biosynthetic process","termid":"GO:0046349"},{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"N-acetylneuraminate biosynthetic process","synonyms":[{"name":"N-acetylneuraminate anabolism","type":"exact"},{"name":"N-acetylneuraminate biosynthesis","type":"exact"},{"name":"N-acetylneuraminate formation","type":"exact"},{"name":"N-acetylneuraminate synthesis","type":"exact"}],"termid":"GO:0046380"}


id: GO:0043774
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: coenzyme F420-2 + L-glutamate + GTP = coenzyme F420-3 + GDP + orthophosphate.","definition_xrefs":["PMID:12909715"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"coenzyme F420-2 alpha-glutamyl ligase activity","secondary_identifiers":["EC:6.3.2.32","RHEA:42332"],"synonyms":[{"name":"F420-2 alpha-glutamyl ligase activity","type":"exact"}],"termid":"GO:0043774"}


id: GO:0072589
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A box H/ACA RNP complex that is located in the Cajal body of the nucleoplasm. In higher eukaryotes, box H/ACA RNP located in Cajal bodies mediate pseudouridylation of spliceosomal snRNAs.","definition_xrefs":["GOC:mah","PMID:17284456","PMID:20227365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"box H/ACA RNP complex","termid":"GO:0072588"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"Cajal body","termid":"GO:0015030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005654"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634","GO:0005654"],"is_obsolete":false,"name":"box H/ACA scaRNP complex","synonyms":[{"name":"nucleoplasmic box H/ACA RNP pseudouridylase complex","type":"exact"}],"termid":"GO:0072589"}


id: PBO:0083847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp41p (EXOSC4)","termid":"PBO:0083847"}


id: PBO:0110256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snRNA and snoRNA trimethylguanosine synthase Tgs1","termid":"PBO:0110256"}


id: PBO:0062056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily W member 3","termid":"PBO:0062056"}


id: GO:0032408
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a MutSbeta mismatch repair complex.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch repair complex binding","termid":"GO:0032404"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"MutSbeta complex binding","termid":"GO:0032408"}


id: PBO:0058429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4799","termid":"PBO:0058429"}


id: GO:0086039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A calcium-transporting P-type ATPase activity involved in regulation of the plasma membrane potential.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"P-type calcium transporter activity","termid":"GO:0005388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential","synonyms":[{"name":"calcium-transporting ATPase activity involved in regulation of cardiac muscle cell membrane potential","type":"exact"}],"termid":"GO:0086039"}


id: GO:0008513
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of organic cations from one side of a membrane to the other, up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"secondary active organic cation transmembrane transporter activity","secondary_identifiers":["GO:0015354","Reactome:R-HSA-549241"],"synonyms":[{"name":"organic cation porter activity","type":"related"},{"name":"polyspecific organic cation transmembrane transporter activity","type":"narrow"}],"termid":"GO:0008513"}


id: GO:0052505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the deposition of callose by the symbiont in its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of defense-related symbiont cell wall callose deposition (obsolete GO:0052505)","synonyms":[{"name":"induction by organism of defense-related symbiont cell wall callose deposition","type":"narrow"},{"name":"positive regulation by organism of defense-related symbiont cell wall callose deposition","type":"exact"}],"termid":"GO:0052505"}


id: PBO:0043400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CMKLR2 antisense RNA","termid":"PBO:0043400"}


id: PBO:0045683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain LC8-type 1 pseudogene 3","termid":"PBO:0045683"}


id: GO:0060652
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which anatomical structures of the mammary gland cord are generated and organized. Mammary gland cords form when the mammary gland bud invades the mammary fat.","definition_xrefs":["GOC:dph","PMID:12558599"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial tube morphogenesis","termid":"GO:0060562"},{"relation_name":"part_of","term_name":"mammary gland duct morphogenesis","termid":"GO:0060603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammary gland cord morphogenesis","synonyms":[{"name":"mammary gland sprout morphogenesis","type":"exact"}],"termid":"GO:0060652"}


id: GO:0005997
data:
  {"annotated_genes":["SJAG_04276"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[115209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005998"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving xylulose, the ketopentose threo-2-pentulose.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentose metabolic process","termid":"GO:0019321"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04276":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"xylulose metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"xylulose metabolism","type":"exact"}],"termid":"GO:0005997","terms_by_termid":{"GO:0005998":null}}


id: FYPO:0002108
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is viable, and tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of a wild-type cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"tapered cell","termid":"FYPO:0000014"},{"relation_name":"has_part","term_name":"viable cell","termid":"FYPO:0000124"},{"relation_name":"is_a","term_name":"viable cell","termid":"FYPO:0000124"},{"relation_name":"is_a","term_name":"tapered vegetative cell","termid":"FYPO:0001119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000005","FYPO:0000004","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"viable tapered cell","synonyms":[{"name":"viable bottle-shaped cell","type":"exact"},{"name":"viable bottle/skittle cell","type":"exact"},{"name":"viable skittle-shaped cell","type":"exact"}],"termid":"FYPO:0002108"}


id: PBO:0054763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2175","termid":"PBO:0054763"}


id: PBO:0080169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"voltage dependent anion channel 1 pseudogene 4","termid":"PBO:0080169"}


id: PBO:0005484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-coA desaturase (predicted)","termid":"PBO:0005484"}


id: PBO:0069406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 666, pseudogene","termid":"PBO:0069406"}


id: PBO:0073646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sigma non-opioid intracellular receptor 1","termid":"PBO:0073646"}


id: PBO:0069532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 801, pseudogene","termid":"PBO:0069532"}


id: FYPO:0004382
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which a single kinetochore becomes attached to both spindle poles, and sister chromatids do not move towards the spindle poles at the same time during mitosis prior to completion of chromosome segregation.","definition_xrefs":["PomBase:mah","PMID:20935472"],"direct_ancestors":[{"relation_name":"has_part","term_name":"lagging mitotic chromosomes","termid":"FYPO:0000228"},{"relation_name":"has_part","term_name":"merotelic kinetochore attachment during mitosis","termid":"FYPO:0004381"},{"relation_name":"is_a","term_name":"abnormal attachment of mitotic spindle microtubules to kinetochore","termid":"FYPO:0004213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000337"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000641","FYPO:0000337","FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"meroterically attached lagging mitotic chromosomes","synonyms":[{"name":"abnormal mitotic sister chromatid segregation, with merotelic kinetochore attachment and lagging mitotic chromosomes","type":"exact"},{"name":"lagging mitotic chromosomes with merotelic kinetochore attachment","type":"exact"},{"name":"lagging mitotic sister chromatids, with merotelic kinetochore attachment","type":"exact"},{"name":"merotelic kinetochore attachment with lagging mitotic chromosomes","type":"exact"},{"name":"meroterically attached lagging mitotic chromosomes during mitotic cell cycle","type":"related"},{"name":"meroterically attached lagging mitotic chromosomes during vegetative growth","type":"exact"}],"termid":"FYPO:0004382"}


id: GO:0072219
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric cortical collecting duct over time, from its formation to the mature structure. The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cortical collecting duct development","termid":"GO:0072059"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric cortical collecting duct development","termid":"GO:0072219"}


id: PBO:0003003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amidase (predicted)","termid":"PBO:0003003"}


id: GO:0003040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the molecular signal from an aortic body is relayed to the vasomotor center, causing it to signal an increase arterial pressure.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"excitation of vasomotor center by chemoreceptor signaling","termid":"GO:0002008"},{"relation_name":"part_of","term_name":"regulation of systemic arterial blood pressure by aortic body chemoreceptor signaling","termid":"GO:0003028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"excitation of vasomotor center by aortic body chemoreceptor signaling","synonyms":[{"name":"excitation of vasomotor center by aortic body chemoreceptor signalling","type":"exact"}],"termid":"GO:0003040"}


id: PBO:0015257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contractile ring myosin V regulator Rng9","termid":"PBO:0015257"}


id: PBO:0072608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal L24 domain containing 1 pseudogene 3","termid":"PBO:0072608"}


id: GO:0061874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hepatic stellate cell contraction.","definition_xrefs":["PMID:24204762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hepatic stellate cell contraction","termid":"GO:0061873"},{"relation_name":"is_a","term_name":"positive regulation of actin filament-based movement","termid":"GO:1903116"},{"relation_name":"positively_regulates","term_name":"hepatic stellate cell contraction","termid":"GO:0061872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hepatic stellate cell contraction","termid":"GO:0061874"}


id: PBO:0108892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 5","termid":"PBO:0108892"}


id: PBO:0044501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteinyl leukotriene receptor 2","termid":"PBO:0044501"}


id: GO:0061527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of dopamine by a cell in which the dopamine acts as a neurotransmitter.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonal dopamine secretion","termid":"GO:0099124"},{"relation_name":"is_a","term_name":"catecholamine secretion, neurotransmission","termid":"GO:0160043"},{"relation_name":"part_of","term_name":"synaptic transmission, dopaminergic","termid":"GO:0001963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0023052"],"is_obsolete":false,"name":"dopamine secretion, neurotransmission","termid":"GO:0061527"}


id: PBO:0039254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase 3 family member B2","termid":"PBO:0039254"}


id: PBO:0081110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFAND2A pseudogene 1","termid":"PBO:0081110"}


id: GO:0070059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to a stimulus indicating endoplasmic reticulum (ER) stress, and ends when the execution phase of apoptosis is triggered. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen.","definition_xrefs":["PMID:18701708","GOC:mtg_apoptosis","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to endoplasmic reticulum stress","termid":"GO:0034976"},{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway","termid":"GO:0097193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress","synonyms":[{"name":"ER stress-induced apoptosis","type":"exact"},{"name":"apoptosis in response to ER stress","type":"exact"},{"name":"apoptosis in response to endoplasmic reticulum stress","type":"broad"},{"name":"apoptosis triggered by ER stress","type":"exact"},{"name":"endoplasmic reticulum stress-induced apoptosis","type":"exact"},{"name":"intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress","type":"exact"}],"termid":"GO:0070059"}


id: GO:0035432
data:
  {"annotated_genes":["SJAG_04920"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[85959],"is_not":false,"summary":null,"term":"GO:0035432"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of gluconate across a membrane by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"regulation of gluconate transmembrane transport","termid":"GO:0035430"},{"relation_name":"positively_regulates","term_name":"gluconate transmembrane transport","termid":"GO:0035429"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of gluconate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0032895"],"synonyms":[{"name":"activation of gluconate transport","type":"narrow"},{"name":"induction of gluconate transport","type":"narrow"},{"name":"positive regulation of gluconate membrane transport","type":"exact"},{"name":"positive regulation of gluconate transport","type":"related"},{"name":"stimulation of gluconate transport","type":"narrow"},{"name":"up regulation of gluconate transport","type":"exact"},{"name":"up-regulation of gluconate transport","type":"exact"},{"name":"upregulation of gluconate transport","type":"exact"}],"termid":"GO:0035432","terms_by_termid":{"GO:0035432":null}}


id: PBO:0045799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endothelin 3","termid":"PBO:0045799"}


id: PBO:0071523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 26","termid":"PBO:0071523"}


id: PBO:0078181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta joining 2-5","termid":"PBO:0078181"}


id: PBO:0003983
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Shk1 Kinase Binding protein","termid":"PBO:0003983"}


id: GO:0140750
data:
  {"annotated_genes":["SJAG_04755","SJAG_01878","SJAG_03982","SJAG_01938","SJAG_05313","SJAG_02698"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[84203,88633,90664,109467,110292,111182],"is_not":false,"summary":null,"term":"GO:0140750"}]},"cv_name":"molecular_function","definition":"A histone octamer slider activity that spaces nucleosomes along chromosomal DNA. This activity is involved in assembling chromatin in uniform nucleosome arrays to regulate transcription by RNA polymerases I, II, and III, as well as DNA replication, recombination and repair.","definition_xrefs":["PMID:11683384","PMID:16468993"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone octamer slider activity","termid":"GO:0140751"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01878":null,"SJAG_01938":null,"SJAG_02698":null,"SJAG_03982":null,"SJAG_04755":null,"SJAG_05313":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0140097"],"is_obsolete":false,"name":"nucleosome array spacer activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nucleosome array spacing activity","type":"exact"}],"termid":"GO:0140750","terms_by_termid":{"GO:0140750":null}}


id: PBO:0043170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 2 interacting protein","termid":"PBO:0043170"}


id: PBO:0091711
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cleavage FacTor","termid":"PBO:0091711"}


id: PBO:0083123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dolichol-P-Man dependent alpha(1-3) mannosyltransferase; involved in synthesis of dolichol-linked oligosaccharide donor for N-linked glycosylation of proteins; G353A missense mutation in human ortholog ALG3 implicated in carbohydrate deficient glycoprotein syndrome type IV, which is characterized by microcephaly, severe epilepsy, minimal psychomotor development, partial deficiency of sialic acids in serum glycoproteins; wild-type human ALG3 can complement yeast alg3 mutant","termid":"PBO:0083123"}


