# terms

id: PBO:0082519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; contains DNA-stimulated ATPase activity; functions interdependently in transcriptional activation with Snf5p and Snf6p","termid":"PBO:0082519"}


id: PBO:0084216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homo-isocitrate dehydrogenase; an NAD-linked mitochondrial enzyme required for the fourth step in the biosynthesis of lysine, in which homo-isocitrate is oxidatively decarboxylated to alpha-ketoadipate","termid":"PBO:0084216"}


id: PR:Q76PC7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mti3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q76PC7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18E5.13","synonyms":[{"name":"Spom972h-mti3","type":"exact"}],"termid":"PR:Q76PC7"}


id: FYPO:0005195
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein degradation is normal (i.e. indistinguishable from wild type) during S phase of the mitotic cell cycle. Protein degradation, also known as protein catabolism, is any metabolic process that results in the destruction of the native, active configuration of a protein, with or without the hydrolysis of peptide bonds.","definition_xrefs":["PomBase:mah","GO:0030163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein degradation","termid":"FYPO:0002799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal protein degradation during mitotic S phase","synonyms":[{"name":"normal protein breakdown during mitotic S phase","type":"exact"},{"name":"normal protein catabolic process during mitotic S phase","type":"exact"},{"name":"normal protein catabolism during mitotic S phase","type":"exact"},{"name":"normal protein degradation during S phase during mitotic cell cycle","type":"related"},{"name":"normal protein degradation during mitotic S phase during vegetative growth","type":"exact"}],"termid":"FYPO:0005195"}


id: GO:0032839
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"All of the contents of a dendrite, excluding the surrounding plasma membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection cytoplasm","termid":"GO:0120111"},{"relation_name":"part_of","term_name":"dendrite","termid":"GO:0030425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"dendrite cytoplasm","synonyms":[{"name":"dendritic cytoplasm","type":"exact"}],"termid":"GO:0032839"}


id: PBO:0052133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily H member 1","termid":"PBO:0052133"}


id: MONDO:0018832
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cerebrovascular disorder","termid":"MONDO:0011057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HTRA1-related autosomal dominant cerebral small vessel disease","secondary_identifiers":["MEDGEN:1799991","Orphanet:482077","GARD:17877","UMLS:C5568568"],"synonyms":[{"name":"HTRA1-related autosomal dominant cerebral angiopathy","type":"exact"}],"termid":"MONDO:0018832","xrefs":{"Monarch":{"xref_id":"0018832"}}}


id: MONDO:0018590
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"amyloidosis","termid":"MONDO:0019065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0021179"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0021179"],"is_obsolete":false,"name":"ABeta2M amyloidosis","secondary_identifiers":["icd11.foundation:448754119","Orphanet:439246","DOID:0080928","GARD:21829","MEDGEN:1842860","UMLS:C5680053"],"synonyms":[{"name":"Beta2-microglobulinic amyloidosis","type":"exact"}],"termid":"MONDO:0018590","xrefs":{"Monarch":{"xref_id":"0018590"}}}


id: MONDO:0015423
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Anaplastic thyroid carcinoma may represent the ultimate dedifferentiation step of thyroid tumorigenesis and is one of the most severe cancers in humans.","definition_xrefs":["Orphanet:142"],"gene_count":0,"genotype_count":0,"name":"obsolete anaplastic thyroid carcinoma (obsolete MONDO:0015423)","termid":"MONDO:0015423","xrefs":{"Monarch":{"xref_id":"0015423"}}}


id: PBO:0077438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 171","termid":"PBO:0077438"}


id: GO:0140668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of production of oxytocin.","definition_xrefs":["PMID:25096581"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of gene expression","termid":"GO:0010628"},{"relation_name":"is_a","term_name":"regulation of oxytocin production","termid":"GO:0140667"},{"relation_name":"positively_regulates","term_name":"oxytocin production","termid":"GO:0036162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of oxytocin production","termid":"GO:0140668"}


id: PBO:0030461
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_biotin_import","termid":"PBO:0030461"}


id: GO:0046291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of 6-hydroxycineole (6-hydroxy-1,8-epoxy-p-menthane), a hydrocarbon with the formula C10H18O2.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete 6-hydroxycineole biosynthetic process (obsolete GO:0046291)","synonyms":[{"name":"6-endo-hydroxycineole biosynthesis","type":"exact"},{"name":"6-endo-hydroxycineole biosynthetic process","type":"exact"},{"name":"6-hydroxycineole anabolism","type":"exact"},{"name":"6-hydroxycineole biosynthesis","type":"exact"},{"name":"6-hydroxycineole biosynthetic process","type":"exact"},{"name":"6-hydroxycineole formation","type":"exact"},{"name":"6-hydroxycineole synthesis","type":"exact"},{"name":"hydroxycineol biosynthesis","type":"exact"},{"name":"hydroxycineol biosynthetic process","type":"exact"}],"termid":"GO:0046291"}


id: PBO:0047749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folliculin interacting protein 2","termid":"PBO:0047749"}


id: PBO:0039634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amine oxidase copper containing 2","termid":"PBO:0039634"}


id: PBO:0001979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BC10 family protein","termid":"PBO:0001979"}


id: PBO:0040904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMS1 pseudogene 8","termid":"PBO:0040904"}


id: GO:1903433
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of constitutive secretory pathway.","definition_xrefs":["GO_REF:0000058","PMID:22899725","GOC:als","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of exocytosis","termid":"GO:0017157"},{"relation_name":"regulates","term_name":"constitutive secretory pathway","termid":"GO:0045054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"regulation of constitutive secretory pathway","termid":"GO:1903433"}


id: PBO:0078104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking protein particle complex subunit 12","termid":"PBO:0078104"}


id: PBO:0063192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate cancer associated transcript 5","termid":"PBO:0063192"}


id: GO:1905885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of triglyceride transport.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:25849533"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of acylglycerol transport","termid":"GO:1901508"},{"relation_name":"is_a","term_name":"regulation of triglyceride transport","termid":"GO:1905883"},{"relation_name":"positively_regulates","term_name":"triglyceride transport","termid":"GO:0034197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of triglyceride transport","synonyms":[{"name":"activation of triacylglycerol transport","type":"narrow"},{"name":"activation of triglyceride transport","type":"narrow"},{"name":"positive regulation of triacylglycerol transport","type":"exact"},{"name":"up regulation of triacylglycerol transport","type":"exact"},{"name":"up regulation of triglyceride transport","type":"exact"},{"name":"up-regulation of triacylglycerol transport","type":"exact"},{"name":"up-regulation of triglyceride transport","type":"exact"},{"name":"upregulation of triacylglycerol transport","type":"exact"},{"name":"upregulation of triglyceride transport","type":"exact"}],"termid":"GO:1905885"}


id: MONDO:0043300
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cheilitis","termid":"MONDO:0002102"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actinic cheilitis","secondary_identifiers":["UMLS:C0267026","MEDGEN:75625","NCIT:C183562","SCTID:46795000","icd11.foundation:436658980","MESH:C535669"],"synonyms":[{"name":"actinic cheilitis","type":"exact"},{"name":"actinic cheilosis","type":"related"},{"name":"solar keratosis of lip","type":"related"}],"termid":"MONDO:0043300","xrefs":{"Monarch":{"xref_id":"0043300"}}}


id: PBO:0070036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1333, pseudogene","termid":"PBO:0070036"}


id: PBO:0028772
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_L-methionine_(R)-S-oxide","termid":"PBO:0028772"}


id: MONDO:0958115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined immunodeficiency","termid":"MONDO:0015131"},{"relation_name":"is_a","term_name":"hyper-IgE syndrome","termid":"MONDO:0018037"},{"relation_name":"is_a","term_name":"bent bone dysplasia","termid":"MONDO:0019698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"autosomal recessive combined immunodeficiency due to complete IL6ST deficiency","secondary_identifiers":["Orphanet:656283"],"termid":"MONDO:0958115","xrefs":{"Monarch":{"xref_id":"0958115"}}}


id: FYPO:0003246
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through S phase of the mitotic cell cycle is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle phase","termid":"FYPO:0002740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal mitotic S phase progression","synonyms":[{"name":"normal S phase progression during mitotic cell cycle","type":"exact"},{"name":"normal mitotic S phase progression during vegetative growth","type":"exact"},{"name":"normal mitotic cell cycle progression in S","type":"exact"}],"termid":"FYPO:0003246"}


id: FYPO:0003795
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of alpha-D-glucan measured in the cell wall is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal alpha-glucan level","termid":"FYPO:0001196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal cell wall alpha-glucan level","synonyms":[{"name":"normal cell wall alpha-D-glucan level","type":"exact"},{"name":"normal cell wall alpha-glucan accumulation","type":"related"},{"name":"normal cell wall alpha-glucan level during mitotic cell cycle","type":"related"},{"name":"normal cell wall alpha-glucan level during vegetative growth","type":"exact"}],"termid":"FYPO:0003795"}


id: MOD:00856
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alanine residue to an L-alaninium (protonated L-alanine).","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-alanine residue","termid":"MOD:00901"},{"relation_name":"is_a","term_name":"alpha-amino protonated residue","termid":"MOD:01700"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protonated L-alanine (L-alaninium) residue","termid":"MOD:00856"}


id: GO:0000825
data:
  {"annotated_genes":["SJAG_03409"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97994],"is_not":false,"summary":null,"term":"GO:0000825"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1D-myo-inositol 1,3,4,5-tetrakisphosphate + ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ADP + H+.","definition_xrefs":["MetaCyc:RXN-7184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol tetrakisphosphate kinase activity","termid":"GO:0051765"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03409":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016301","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"inositol-1,3,4,5-tetrakisphosphate 6-kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1855206","KEGG_REACTION:R10953"],"synonyms":[{"name":"1D-myo-inositol-tetrakisphosphate 6-kinase activity","type":"broad"},{"name":"inositol 1,3,4,5-tetrakisphosphate 6-kinase activity","type":"exact"},{"name":"inositol tetrakisphosphate 6-kinase activity","type":"broad"}],"termid":"GO:0000825","terms_by_termid":{"GO:0000825":null}}


id: PBO:0062888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovo like transcriptional repressor 1","termid":"PBO:0062888"}


id: PBO:0064424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patatin like phospholipase domain containing 2","termid":"PBO:0064424"}


id: GO:1990897
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A protein complex that phosphorylates serine 2 residues in the CTD domain of productively elongating large subunits of DNA-directed RNA polymerase II, holoenzyme. In S. cerevisiae this complex consists of CTK1/CTK2/CTK3, in S. pombe Lsk1/Lsc1/Lsg1. Human CTK1 homologs include CDK12/13.","definition_xrefs":["PMID:20952539","PMID:24879308"],"gene_count":0,"genotype_count":0,"name":"obsolete CTDK-1 complex (obsolete GO:1990897)","termid":"GO:1990897"}


id: PBO:0030910
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_subcellular_component_during_vegetative_growth","termid":"PBO:0030910"}


id: PBO:0071124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 126","termid":"PBO:0071124"}


id: PBO:0066786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 85","termid":"PBO:0066786"}


id: PBO:0027081
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_oxidation_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0027081"}


id: MONDO:0018689
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive plasma cell neoplasm characterized by the presence of neoplastic plasma cells in the peripheral blood. It is characterized by the presence of a circulating clonal plasma cell count that exceeds 2x10^9/L or is 20% of the leukocyte differential count.","definition_xrefs":["NCIT:C3180"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma cell neoplasm","termid":"MONDO:0004959"},{"relation_name":"is_a","term_name":"acute lymphoblastic leukemia","termid":"MONDO:0004967"},{"relation_name":"is_a","term_name":"B-cell non-Hodgkin lymphoma","termid":"MONDO:0015759"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"plasma cell leukemia","secondary_identifiers":["EFO:0006475","SCTID:95210003","icd11.foundation:2048216430","UMLS:C0023484","Orphanet:454714","ICDO:9733/3","GARD:9373","MEDGEN:9733","ICD9:203.1","DOID:9513","MESH:D007952","ICD9:203.10"],"synonyms":[{"name":"PCL","type":"exact"},{"name":"leukaemia plasmacytic","type":"exact"},{"name":"leukemia plasmacytic","type":"exact"},{"name":"leukemia, plasma cell","type":"related"},{"name":"plasma cell leukemia","type":"exact"},{"name":"plasmacytic leukaemia","type":"exact"},{"name":"plasmacytic leukemia","type":"exact"}],"termid":"MONDO:0018689","xrefs":{"Monarch":{"xref_id":"0018689"}}}


id: PBO:0110408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 59","termid":"PBO:0110408"}


id: PBO:0050660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 90 beta family member 3, pseudogene","termid":"PBO:0050660"}


id: PBO:0113081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cysteine desulfurase involved in iron-sulfur cluster biogenesis; required for thio-modification of mitochondrial and cytoplasmic tRNAs; involved in DNA damage response by providing iron-sulfur cluster cofactors for DNA repair enzymes; essential protein located predominantly in mitochondria","termid":"PBO:0113081"}


id: MONDO:0019026
data:
  {"annotated_genes":["SJAG_01183","SJAG_00516"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85621],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009815"},{"annotations":[85787],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957262"}]},"cv_name":"mondo","definition":"An autosomal recessive form of osteopetrosis caused by mutation(s) in at least 8 genes related to osteoclast function. This condition is characterized by the failure of osteoclasts to resorb bone, resulting in impaired bone modeling/remodeling, and skeletal fragility despite increased bone mass; it is also associated with hematopoietic insufficiency, hypocalcemia, disturbed tooth eruption, nerve entrapment syndromes, and growth impairment. Some cases are also associated with progressive neurological deterioration.","definition_xrefs":["NCIT:C129733"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"osteopetrosis","termid":"MONDO:0017198"},{"relation_name":"is_a","term_name":"hereditary optic neuropathy","termid":"MONDO:0020249"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00516":null,"SJAG_01183":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive osteopetrosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:667","GARD:15012","MEDGEN:1385510","UMLS:C4272578","SCTID:367489004","OMIMPS:259700"],"synonyms":[{"name":"OPTB","type":"exact"},{"name":"autosomal recessive malignant osteopetrosis","type":"exact"},{"name":"autosomal recessive osteopetrosis","type":"exact"},{"name":"autosomal recessive osteopetrosis (disease)","type":"exact"},{"name":"infantile malignant osteopetrosis","type":"exact"},{"name":"malignant osteopetrosis","type":"related"},{"name":"osteopetrosis (disease), autosomal recessive","type":"exact"}],"termid":"MONDO:0019026","terms_by_termid":{"MONDO:0009815":null,"MONDO:0957262":null},"xrefs":{"Monarch":{"xref_id":"0019026"}}}


id: PBO:0068098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 405","termid":"PBO:0068098"}


id: PR:O74551
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC777.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C777.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.12c","synonyms":[{"name":"Spom972h-SPCC777.12c","type":"exact"}],"termid":"PR:O74551"}


id: MONDO:0045024
data:
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id: GO:0000960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving catabolism in the mitochondrion of RNA transcribed from the mitochondrial genome.","definition_xrefs":["GOC:mah","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"is_a","term_name":"regulation of RNA metabolic process","termid":"GO:0051252"},{"relation_name":"regulates","term_name":"mitochondrial RNA catabolic process","termid":"GO:0000957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mitochondrial RNA catabolic process","termid":"GO:0000960"}


id: GO:0045592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ovarian cumulus cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation","termid":"GO:0030856"},{"relation_name":"is_a","term_name":"regulation of antral ovarian follicle growth","termid":"GO:2000387"},{"relation_name":"regulates","term_name":"cumulus cell differentiation","termid":"GO:0001549"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cumulus cell differentiation","synonyms":[{"name":"regulation of ovarian cumulus cell differentiation","type":"exact"}],"termid":"GO:0045592"}


id: PBO:0027936
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_population_growth_on_glycerol_carbon_source","termid":"PBO:0027936"}


id: PBO:0079348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tweety family member 1","termid":"PBO:0079348"}


id: PBO:0069482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 749, pseudogene","termid":"PBO:0069482"}


id: MONDO:0013449
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Leber congenital amaurosis in which the cause of the disease is a mutation in the CRX gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Leber congenital amaurosis","termid":"MONDO:0018998"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005328"],"is_obsolete":false,"name":"Leber congenital amaurosis 7","secondary_identifiers":["UMLS:C3151192","DOID:0110333","GARD:10880","ICD10CM:H35.5","MEDGEN:462542","OMIM:613829"],"synonyms":[{"name":"CRX Leber congenital amaurosis","type":"exact"},{"name":"LCA7","type":"exact"},{"name":"Leber congenital amaurosis 7","type":"exact"},{"name":"Leber congenital amaurosis caused by mutation in CRX","type":"exact"},{"name":"Leber congenital amaurosis type 7","type":"exact"}],"termid":"MONDO:0013449","xrefs":{"Monarch":{"xref_id":"0013449"}}}


id: PR:Q9UUE5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nup85 gene.","definition_xrefs":["UniProtKB:Q9UUE5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin nup85 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17G9.04c","synonyms":[{"name":"Spom972h-nup85","type":"exact"},{"name":"nuclear pore protein nup85 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUE5"}


id: PBO:0088608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-I ortholog, inner centromere connector Mis6","termid":"PBO:0088608"}


id: GO:0106420
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + N6-biotinyl-L-lysyl-[protein] + NAD+ = 2''-O-biotinyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide.","definition_xrefs":["PMID:25525879","RHEA:70479"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"NAD-dependent protein biotinidase activity","termid":"GO:0106420"}


id: PBO:0086543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YCR085W is not an essential gene","termid":"PBO:0086543"}


id: GO:0021997
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pattern specification process in which the axes of the nervous system are established.","definition_xrefs":["GO_REF:0000021","GOC:dph","GOC:dgh","GOC:cls","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic axis specification","termid":"GO:0000578"},{"relation_name":"part_of","term_name":"neural plate development","termid":"GO:0001840"},{"relation_name":"part_of","term_name":"neural plate pattern specification","termid":"GO:0060896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural plate axis specification","synonyms":[{"name":"neural plate axis determination","type":"related"}],"termid":"GO:0021997"}


id: PBO:0084522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the ChAPs (Chs5p-Arf1p-binding proteins) family; part of the exomer complex with Chs5p to mediate export of specific cargo proteins, including Chs3p, from the Golgi to the plasma membrane; BCH2 has a paralog, CHS6, that arose from the whole genome duplication","termid":"PBO:0084522"}


id: PATO:0000309
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An age which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"age","termid":"PATO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"young","termid":"PATO:0000309"}


id: PBO:0013093
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Replication Uncoupled from Mitosis","termid":"PBO:0013093"}


id: MONDO:0032913
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital heart defects, multiple types, 7","secondary_identifiers":["MEDGEN:1714491","OMIM:618780","UMLS:C5394062"],"synonyms":[{"name":"CHTD7","type":"related"},{"name":"CONGENITAL HEART DEFECTS, MULTIPLE TYPES, 7","type":"related"}],"termid":"MONDO:0032913","xrefs":{"Monarch":{"xref_id":"0032913"}}}


id: GO:1902476
data:
  {"annotated_genes":["SJAG_03401","SJAG_02463","SJAG_01168"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99531,104860,109269,110805],"is_not":false,"summary":null,"term":"GO:1902476"}]},"cv_name":"biological_process","definition":"The process in which chloride is transported across a membrane.","definition_xrefs":["GOC:vw","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloride transport","termid":"GO:0006821"},{"relation_name":"is_a","term_name":"monoatomic anion transmembrane transport","termid":"GO:0098656"},{"relation_name":"is_a","term_name":"inorganic anion transmembrane transport","termid":"GO:0098661"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01168":null,"SJAG_02463":null,"SJAG_03401":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"chloride transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1902476","terms_by_termid":{"GO:1902476":null}}


id: FYPO:0001111
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of glutathione disulfide (GSSG) measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular glutathione disulfide level","synonyms":[{"name":"increased cellular GSSG level","type":"exact"},{"name":"increased cellular glutathione disulfide level during mitotic cell cycle","type":"related"},{"name":"increased cellular glutathione disulfide level during vegetative growth","type":"exact"},{"name":"increased cellular glutathione disulphide level","type":"exact"},{"name":"increased cellular oxidised glutathione level","type":"exact"},{"name":"increased glutathione disulfide accumulation","type":"related"}],"termid":"FYPO:0001111"}


id: PBO:0075866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family pseudogene 6","termid":"PBO:0075866"}


id: GO:0071255
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A vesicle organization process that takes place as part of the Cvt pathway, and results in the formation of a double membrane-bounded cytosolic structure that sequesters precursor aminopeptidase I (prAPI).","definition_xrefs":["GOC:rb","PMID:10966461","PMID:11085977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle organization","termid":"GO:0016050"},{"relation_name":"is_a","term_name":"organelle assembly","termid":"GO:0070925"},{"relation_name":"part_of","term_name":"cytoplasm to vacuole targeting by the Cvt pathway","termid":"GO:0032258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006605"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0006605","GO:0044085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"Cvt vesicle assembly","synonyms":[{"name":"Cvt vesicle biosynthesis","type":"related"},{"name":"Cvt vesicle formation","type":"exact"},{"name":"cytoplasm to vacuole targeting vesicle assembly","type":"exact"},{"name":"cytoplasm-to-vacuole targetin vesicle assembly","type":"exact"}],"termid":"GO:0071255"}


id: FYPO:0000791
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of actin cortical patches is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton morphology during vegetative growth","termid":"FYPO:0000350"},{"relation_name":"is_a","term_name":"abnormal actin cortical patch","termid":"FYPO:0003987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0004803","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal actin cortical patch morphology","synonyms":[{"name":"abnormal F-actin patch morphology","type":"exact"},{"name":"abnormal actin cortical patch morphology during mitotic cell cycle","type":"related"},{"name":"abnormal actin cortical patch morphology during vegetative growth","type":"exact"},{"name":"abnormal actin patch morphology","type":"exact"}],"termid":"FYPO:0000791"}


id: GO:0044852
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which chromatin structure of nonrepetitive regions of DNA is compacted prior to and during mitosis in eukaryotic cells.","definition_xrefs":["PMID:10811823","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete nonrepetitive DNA condensation (obsolete GO:0044852)","synonyms":[{"name":"nonrepetitive DNA packaging","type":"exact"}],"termid":"GO:0044852"}


id: MONDO:0014493
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A somatic mutation in the CTLA4 gene resulting in only a single functional gene. Haploinsufficiency for CTLA4 is associated with autoimmune lymphoproliferative syndrome, type V.","definition_xrefs":["NCIT:C126341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune lymphoproliferative syndrome","termid":"MONDO:0017979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency","secondary_identifiers":["MEDGEN:863651","GARD:12316","OMIM:616100","Orphanet:436159","UMLS:C4015214"],"synonyms":[{"name":"ALPS due to CTLA4 haploinsufficiency","type":"exact"},{"name":"ALPS type 5","type":"exact"},{"name":"ALPS type V","type":"exact"},{"name":"ALPS5","type":"related"},{"name":"CHAI","type":"exact"},{"name":"CTLA-4 haploinsufficiency with autoimmune infiltration disease","type":"exact"},{"name":"CTLA4 haploinsufficiency","type":"exact"},{"name":"CTLA4 haploinsufficiency with autoimmune infiltration","type":"related"},{"name":"autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency","type":"exact"},{"name":"autoimmune lymphoproliferative syndrome type 5","type":"exact"},{"name":"autoimmune lymphoproliferative syndrome type V","type":"exact"},{"name":"autoimmune lymphoproliferative syndrome, type 5","type":"related"},{"name":"autoimmune lymphoproliferative syndrome, type V","type":"related"},{"name":"chai","type":"exact"},{"name":"immune dysregulation with autoimmunity, immunodeficiency, and lymphoproliferation","type":"exact"}],"termid":"MONDO:0014493","xrefs":{"Monarch":{"xref_id":"0014493"}}}


id: PBO:0077371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 109","termid":"PBO:0077371"}


id: PBO:0034533
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_phosphatidylserine_level","termid":"PBO:0034533"}


id: PBO:0041211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic leucine zipper and W2 domains 2","termid":"PBO:0041211"}


id: MONDO:0001545
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete von willebrand disease (obsolete MONDO:0001545)","synonyms":[{"name":"obsolete von willebrand's disease","type":"exact"}],"termid":"MONDO:0001545","xrefs":{"Monarch":{"xref_id":"0001545"}}}


id: PBO:0068084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 390","termid":"PBO:0068084"}


id: GO:0046365
data:
  {"annotated_genes":["SJAG_03660","SJAG_04334","SJAG_04192","SJAG_04660","SJAG_00027","SJAG_03958","SJAG_06622","SJAG_02135","SJAG_03903","SJAG_02796","SJAG_02945","SJAG_06621","SJAG_02009","SJAG_00605","SJAG_01310","SJAG_03174","SJAG_00461","SJAG_03373","SJAG_02010","SJAG_03828","SJAG_02369","SJAG_00839","SJAG_01209","SJAG_04495","SJAG_02107","SJAG_04276"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100366,94214,94948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019568"},{"annotations":[108540,104986,104616,108546,108079,102818,108542,102562,97188,108541,108543,108544,108080,108545,103641,108076,108082,108078,108081,108077,94210,93723,104617,115486,97466,104987,104618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[103529],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019303"},{"annotations":[94216,94949,100367],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042843"},{"annotations":[108048],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019388"},{"annotations":[118146],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005998"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide metabolic process","termid":"GO:0005996"},{"relation_name":"is_a","term_name":"carbohydrate catabolic process","termid":"GO:0016052"},{"relation_name":"is_a","term_name":"small molecule catabolic process","termid":"GO:0044282"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_01209":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02010":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03174":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_03958":null,"SJAG_04192":null,"SJAG_04276":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_04660":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"monosaccharide catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"monosaccharide breakdown","type":"exact"},{"name":"monosaccharide catabolism","type":"exact"},{"name":"monosaccharide degradation","type":"exact"}],"termid":"GO:0046365","terms_by_termid":{"GO:0005998":null,"GO:0019303":null,"GO:0019388":null,"GO:0019568":null,"GO:0042843":null,"GO:0061621":null}}


id: SO:0001923
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-coding RNA transcript, derived from the transcription of the telomere. These transcripts contain G rich telomeric RNA repeats and RNA tracts corresponding to adjacent subtelomeric sequences. They are 100-9000 bases long.","definition_xrefs":["PMID:22139915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomeric_transcript","termid":"SO:0001927"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TERRA","synonyms":[{"name":"telomeric repeat containing RNA","type":"related"}],"termid":"SO:0001923"}


id: PBO:0074077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC25A51 pseudogene 1","termid":"PBO:0074077"}


id: MONDO:0957988
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"osteogenesis imperfecta","termid":"MONDO:0019019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"osteogenesis imperfecta, type 23","secondary_identifiers":["UMLS:C5882757","MEDGEN:1846121","OMIM:620639"],"termid":"MONDO:0957988","xrefs":{"Monarch":{"xref_id":"0957988"}}}


id: GO:0014724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of twitch skeletal muscle contraction.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of skeletal muscle contraction","termid":"GO:0014819"},{"relation_name":"regulates","term_name":"twitch skeletal muscle contraction","termid":"GO:0014721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of twitch skeletal muscle contraction","termid":"GO:0014724"}


id: PBO:0067160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 213, pseudogene","termid":"PBO:0067160"}


id: MONDO:0018249
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"finger hyperphalangy - toe anomalies - severe pectus excavatum syndrome","secondary_identifiers":["MEDGEN:1673147","GARD:21584","Orphanet:369979","UMLS:C5190599"],"termid":"MONDO:0018249","xrefs":{"Monarch":{"xref_id":"0018249"}}}


id: PBO:0072179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S16 pseudogene 6","termid":"PBO:0072179"}


id: GO:1905715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cornification.","definition_xrefs":["PMID:26014679","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of programmed cell death","termid":"GO:0043067"},{"relation_name":"regulates","term_name":"cornification","termid":"GO:0070268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cornification","termid":"GO:1905715"}


id: GO:0033254
data:
  {"annotated_genes":["SJAG_01080","SJAG_03442","SJAG_01319"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[88309,105832,113646],"is_not":false,"summary":null,"term":"GO:0033254"}]},"cv_name":"cellular_component","definition":"A protein complex that contains four related proteins that have been implicated in several membrane-related processes, such as sorting of H+-translocating ATPases, endocytosis, ER-Golgi trafficking, vacuole fusion, vacuolar polyphosphate homeostasis and the microautophagic scission of vesicles into the vacuolar lumen. The complex is enriched at the vacuolar membrane, but also found in other cellular compartments, including the ER and the cell periphery. In Saccharomyces, the subunits are Vtc1p, Vtc2p, Vtc3p and Vtc4p.","definition_xrefs":["PMID:34544285","PMID:17079729","PMID:11823419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01080":null,"SJAG_01319":null,"SJAG_03442":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"vacuolar transporter chaperone complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"VTC complex","type":"exact"}],"termid":"GO:0033254","terms_by_termid":{"GO:0033254":null}}


id: GO:0050743
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a protein-FMN linkage via 1'-(8alpha-FMN)-L-histidine.","definition_xrefs":["RESID:AA0352","PMID:8611516"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-FMN linkage via 1'-(8alpha-FMN)-L-histidine (obsolete GO:0050743)","termid":"GO:0050743"}


id: PBO:0005506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-K","termid":"PBO:0005506"}


id: GO:0001217
data:
  {"annotated_genes":["SJAG_00987","SJAG_04009","SJAG_00792","SJAG_04584","SJAG_00124","SJAG_02730","SJAG_04813","SJAG_02898","SJAG_03473"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93924,105415,103624,93261,79662,92497,107959,115210],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001227"},{"annotations":[95587],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106250"}]},"cv_name":"molecular_function","definition":"A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets.","definition_xrefs":["GOC:txnOH-2018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-binding transcription factor activity","termid":"GO:0003700"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00124":null,"SJAG_00792":null,"SJAG_00987":null,"SJAG_02730":null,"SJAG_02898":null,"SJAG_03473":null,"SJAG_04009":null,"SJAG_04584":null,"SJAG_04813":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003700"},{"rel_name":"is_a","termid":"GO:0140110"}],"interesting_parent_ids":["GO:0003700","GO:0140110","GO:0003674"],"is_obsolete":false,"name":"DNA-binding transcription repressor activity","references_by_uniquename":{"GO_REF:0000024":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0001141","GO:0001219","GO:0001218","GO:0001220"],"synonyms":[{"name":"bacterial-type DNA binding transcription repressor activity","type":"narrow"},{"name":"bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription","type":"narrow"},{"name":"bacterial-type RNA polymerase transcriptional repressor activity, cadmium ion regulated sequence-specific DNA binding","type":"narrow"},{"name":"bacterial-type RNA polymerase transcriptional repressor activity, copper ion regulated sequence-specific DNA binding","type":"narrow"},{"name":"bacterial-type RNA polymerase transcriptional repressor activity, metal ion regulated sequence-specific DNA binding","type":"narrow"},{"name":"bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding","type":"narrow"},{"name":"cadmium ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription","type":"narrow"},{"name":"copper ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription","type":"narrow"},{"name":"metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription","type":"narrow"},{"name":"sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription","type":"narrow"},{"name":"transcriptional repressor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding","type":"narrow"},{"name":"transcriptional repressor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding","type":"narrow"}],"termid":"GO:0001217","terms_by_termid":{"GO:0001227":null,"GO:0106250":null}}


id: PBO:0061075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NFKB inhibitor interacting Ras like 2","termid":"PBO:0061075"}


id: PBO:0027395
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_diacylglycerol_O-acyltransferase_activity","termid":"PBO:0027395"}


id: GO:0097123
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin A1 and cyclin-dependent kinase 2 (CDK2). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["PMID:15935619","GOC:so"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cyclin A1-CDK2 complex","termid":"GO:0097123"}


id: FYECO:0000196
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with urea as the nitrogen source.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose MM, urea nitrogen source","synonyms":[{"name":"glucose minimal medium, urea nitrogen source","type":"exact"},{"name":"standard glucose minimal medium, urea nitrogen source","type":"related"}],"termid":"FYECO:0000196"}


id: MOD:00372
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-tyrosine residues with a carbon-carbon bond to form 3'-(3'-L-tyrosinyl)-L-tyrosine.","definition_xrefs":["PubMed:8702710","PubMed:8937563","PubMed:14249161","RESID:AA0367","PubMed:637884","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uncategorized crosslinked residues","termid":"MOD:00692"},{"relation_name":"is_a","term_name":"crosslinked L-tyrosine residue","termid":"MOD:02058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-(3'-L-tyrosinyl)-L-tyrosine","synonyms":[{"name":"(2S,2'S)-3,3'-(6,6'-dihydroxybiphenyl-3,3'-diyl)bis(2-aminopropanoic acid)","type":"exact"},{"name":"3'-(L-tyros-3'-yl)-L-tyrosine","type":"exact"},{"name":"3,3'-BiTyr (Crosslink)","type":"exact"},{"name":"6,6'-dihydroxy-(1,1'-biphenyl)-3,3'-bis(2-aminopropanoic acid)","type":"exact"},{"name":"alpha,alpha'-diamino-6,6'-dihydroxy-(1,1'-biphenyl)-3,3'-dipropanoic acid","type":"exact"},{"name":"bityrosine","type":"exact"},{"name":"o,o-dityrosine","type":"exact"}],"termid":"MOD:00372"}


id: GO:0003866
data:
  {"annotated_genes":["SJAG_00337"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90309],"is_not":false,"summary":null,"term":"GO:0003866"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate.","definition_xrefs":["RHEA:21256","EC:2.5.1.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00337":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016765","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-phosphoshikimate 1-carboxyvinyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R03460","MetaCyc:2.5.1.19-RXN"],"synonyms":[{"name":"3-enol-pyruvoylshikimate-5-phosphate synthase activity","type":"related"},{"name":"5-enolpyruvylshikimate-3-phosphate synthase activity","type":"related"},{"name":"EPSP synthase activity","type":"related"},{"name":"phosphoenolpyruvate:3-phosphoshikimate 5-O-(1-carboxyvinyl)-transferase activity","type":"related"}],"termid":"GO:0003866","terms_by_termid":{"GO:0003866":null}}


id: PBO:0088570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO activating enzyme E1-type Uba2","termid":"PBO:0088570"}


id: GO:0030708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the germarium. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["PMID:11591336","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female germ-line cyst encapsulation","termid":"GO:0048139"},{"relation_name":"part_of","term_name":"germarium-derived egg chamber formation","termid":"GO:0007293"},{"relation_name":"part_of","term_name":"follicle cell of egg chamber development","termid":"GO:0030707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"germarium-derived female germ-line cyst encapsulation","termid":"GO:0030708"}


id: PBO:0064389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMS1 homolog 2, mismatch repair system component pseudogene 11","termid":"PBO:0064389"}


id: PBO:0067888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 190","termid":"PBO:0067888"}


id: GO:1905401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of activated CD4-positive, alpha-beta T cell apoptotic process.","definition_xrefs":["GOC:TermGenie","PMID:24187568","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell apoptotic process","termid":"GO:0070234"},{"relation_name":"is_a","term_name":"regulation of activated CD4-positive, alpha-beta T cell apoptotic process","termid":"GO:1905399"},{"relation_name":"positively_regulates","term_name":"activated CD4-positive, alpha-beta T cell apoptotic process","termid":"GO:1905398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of activated CD4-positive, alpha-beta T cell apoptotic process","synonyms":[{"name":"activation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"narrow"},{"name":"positive regulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"positive regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"positive regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"positive regulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"positive regulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"positive regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"positive regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"up regulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"up regulation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"up regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"up regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"up regulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"up regulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"up regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"up regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"up-regulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"up-regulation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"up-regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"up-regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"up-regulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"up-regulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"up-regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"up-regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"upregulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"upregulation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"upregulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"upregulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"upregulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"upregulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"upregulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"upregulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"}],"termid":"GO:1905401"}


id: PBO:0089162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-14 family minus-end directed microtubule motor Klp2","termid":"PBO:0089162"}


id: PBO:0090823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIID complex subunit Taf13","termid":"PBO:0090823"}


id: PBO:0005849
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.2.1.11","termid":"PBO:0005849"}


id: PBO:0054973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2387","termid":"PBO:0054973"}


id: PBO:0080651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WEE1 G2 checkpoint kinase","termid":"PBO:0080651"}


id: PBO:0017445
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-produced_by","termid":"PBO:0017445"}


id: GO:0010852
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and decreases the activity of an enzyme that catalyzes a ring closure reaction.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"},{"relation_name":"is_a","term_name":"cyclase regulator activity","termid":"GO:0010851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0004857"}],"interesting_parent_ids":["GO:0140678","GO:0003674","GO:0004857","GO:0098772","GO:0030234"],"is_obsolete":false,"name":"cyclase inhibitor activity","termid":"GO:0010852"}


id: SO:1000119
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000119 sequence_variant_causing_inactive_ligand_binding_site (obsolete SO:1000119)","synonyms":[{"name":"mutation causing inactive ligand binding site","type":"related"},{"name":"sequence variant causing inactive ligand binding site","type":"exact"}],"termid":"SO:1000119"}


id: MONDO:1012695
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any dwarfism that occurs in cattle due to a mutation in the PRKG2 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"dwarfism, non-human animal","termid":"MONDO:1012971"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dwarfism, PRKG2-related, cattle","secondary_identifiers":["OMIA:001485-9913"],"termid":"MONDO:1012695","xrefs":{"Monarch":{"xref_id":"1012695"}}}


id: PR:O13757
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC17A2.07c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic chromosome segregation protein C17A2.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A2.07c","synonyms":[{"name":"Spom972h-SPAC17A2.07c","type":"exact"}],"termid":"PR:O13757"}


id: MONDO:0016332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-familial hypertrophic cardiomyopathy","termid":"MONDO:0016330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"hypertrophic cardiomyopathy due to intensive athletic training","secondary_identifiers":["Orphanet:217601","icd11.foundation:183927358"],"termid":"MONDO:0016332","xrefs":{"Monarch":{"xref_id":"0016332"}}}


id: PBO:0056714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEMO1 pseudogene 6","termid":"PBO:0056714"}


id: PBO:0050337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 39","termid":"PBO:0050337"}


id: GO:0060220
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a photoreceptor cell in a camera-type eye.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye photoreceptor cell fate commitment","termid":"GO:0042706"},{"relation_name":"part_of","term_name":"camera-type eye photoreceptor cell differentiation","termid":"GO:0060219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"camera-type eye photoreceptor cell fate commitment","termid":"GO:0060220"}


id: PBO:0030560
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_binding","termid":"PBO:0030560"}


id: MONDO:0044355
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Isolated sternocostoclavicular hyperostosis is a rare rheumatologic disease characterized by predominantly bilateral, chronic, sterile inflammation and progressive sclerosis and hyperostosis of the sternocostoclavicular joint, with adjacent soft tissue ossification, in the absence of other joint involvement. It presents as recurrent episodes of pain, edema and/or erythema of the sternoclavicular region. Palmoplantar pustulosis may be additionally observed in some cases.","definition_xrefs":["Orphanet:178311"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rheumatic disorder","termid":"MONDO:0005554"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isolated sternocostoclavicular hyperostosis","secondary_identifiers":["MEDGEN:1640582","UMLS:C4707796","SCTID:766711009","GARD:20144"],"synonyms":[{"name":"isolated SCCH","type":"exact"}],"termid":"MONDO:0044355","xrefs":{"Monarch":{"xref_id":"0044355"}}}


id: MONDO:0019804
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital tracheomalacia is a rare condition where the trachea is soft and flexible causing the tracheal wall to collapse when exhaling, coughing or crying, that usually presents in infancy, and that is characterized by stridor and noisy breathing or upper respiratory infections. Tracheomalacia improves by the age of 18-24 months.","definition_xrefs":["Orphanet:95430"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tracheal disorder","termid":"MONDO:0002567"},{"relation_name":"is_a","term_name":"otorhinolaryngologic disease","termid":"MONDO:0024623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tracheomalacia","secondary_identifiers":["icd11.foundation:1616705280","MEDGEN:215296","NCIT:C98634","MESH:D055090","NANDO:2200195","DOID:0060313","HP:0002779","icd11.foundation:303133490","ICD9:748.3","NORD:2028","SCTID:95467005","UMLS:C0948187","MedDRA:10010654","GARD:10515"],"synonyms":[{"name":"Congenital Tracheomalacia","type":"exact"},{"name":"congenital major airway collapse","type":"exact"},{"name":"congenital tracheomalacia","type":"exact"},{"name":"tracheomalacia, congenital","type":"related"},{"name":"type 1 tracheomalacia","type":"related"}],"termid":"MONDO:0019804","xrefs":{"Monarch":{"xref_id":"0019804"}}}


id: PBO:0035802
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H2A_phosphorylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0035802"}


id: GO:0034125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of MyD88-dependent toll-like receptor signaling pathway.","definition_xrefs":["PMID:17328678","GOC:add","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of toll-like receptor signaling pathway","termid":"GO:0034122"},{"relation_name":"is_a","term_name":"regulation of MyD88-dependent toll-like receptor signaling pathway","termid":"GO:0034124"},{"relation_name":"negatively_regulates","term_name":"MyD88-dependent toll-like receptor signaling pathway","termid":"GO:0002755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of MyD88-dependent toll-like receptor signaling pathway","synonyms":[{"name":"negative regulation of MyD88-dependent TLR signaling pathway","type":"exact"},{"name":"negative regulation of MyD88-dependent toll-like receptor signalling pathway","type":"exact"}],"termid":"GO:0034125"}


id: PBO:0050577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heparan sulfate-glucosamine 3-sulfotransferase 2","termid":"PBO:0050577"}


id: GO:0032132
data:
  {"annotated_genes":["SJAG_04778"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87389],"is_not":false,"summary":null,"term":"GO:0032132"}]},"cv_name":"molecular_function","definition":"Binding to an O6-alkylguanine adduct in DNA.","definition_xrefs":["GOC:mah","PMID:16679453"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkylated DNA binding","termid":"GO:0032131"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04778":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"O6-alkylguanine-DNA binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032132","terms_by_termid":{"GO:0032132":null}}


id: PBO:0066982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 285","termid":"PBO:0066982"}


id: GO:0036120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platelet-derived growth factor stimulus.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to platelet-derived growth factor","termid":"GO:0036119"},{"relation_name":"is_a","term_name":"cellular response to growth factor stimulus","termid":"GO:0071363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to platelet-derived growth factor stimulus","synonyms":[{"name":"cellular response to PDGF stimulus","type":"exact"}],"termid":"GO:0036120"}


id: MONDO:0033013
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"erythrokeratodermia variabilis","termid":"MONDO:0017851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"erythrokeratodermia variabilis et progressiva 3","secondary_identifiers":["OMIM:617525","GARD:18589","DOID:0080249","MEDGEN:1380593","UMLS:C4479619"],"synonyms":[{"name":"EKVP3","type":"related"},{"name":"erythrokeratodermia variabilis ET progressiva 3","type":"related"}],"termid":"MONDO:0033013","xrefs":{"Monarch":{"xref_id":"0033013"}}}


id: PBO:0068812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 49, pseudogene","termid":"PBO:0068812"}


id: GO:0120229
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a motile cilium.","definition_xrefs":["GOC:krc","PMID:27486780"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cilium","termid":"GO:0061512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to motile cilium","synonyms":[{"name":"protein localization to nonmotile primary cilium","type":"related"}],"termid":"GO:0120229"}


id: MONDO:1012241
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"retinal dysplasia, non-human animal","termid":"MONDO:1011979"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinal dysplasia, dog","secondary_identifiers":["OMIA:000868-9615"],"termid":"MONDO:1012241","xrefs":{"Monarch":{"xref_id":"1012241"}}}


id: PBO:0027496
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_mevastatin","termid":"PBO:0027496"}


id: MONDO:0011675
data:
  {"annotated_genes":["SJAG_00858"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86470],"is_not":false,"summary":null,"term":"MONDO:0011675"}]},"cv_name":"mondo","definition":"Autosomal dominant intermediate Charcot-Marie-Tooth disease type A is a rare hereditary motor and sensory neuropathy characterized by intermediate motor median nerve conduction velocities (usually between 25 and 45 m/s) and signs of both demyelination and axonal degeneration in nerve biopsies. It presents with usual clinical features of Charcot-Marie-Tooth disease (progressive muscle weakness and atrophy of the distal extremities, distal sensory loss, reduced or absent deep tendon reflexes, and feet deformities) in the first to second decade of life with steady progression until the fourth decade, severe progression and stabilization afterwards.","definition_xrefs":["Orphanet:100043"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant intermediate Charcot-Marie-Tooth disease","termid":"MONDO:0019548"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00858":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth Disease, axonal, type 2GG","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:12437","OMIM:606483","UMLS:C5561933","MESH:C564702","SCTID:765744006","MEDGEN:1794143","DOID:0110202"],"synonyms":[{"name":"CMT2GG","type":"exact"},{"name":"CMTDIA","type":"exact"},{"name":"Charcot-Marie-Tooth disease dominant intermediate A","type":"exact"},{"name":"Charcot-Marie-Tooth disease dominant intermediate type A","type":"exact"},{"name":"Charcot-Marie-Tooth disease, dominant intermediate A","type":"related"},{"name":"Charcot-Marie-Tooth neuropathy dominant intermediate A","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, dominant Intermediate a","type":"related"},{"name":"DI-CMTA","type":"exact"},{"name":"Di-Cmta","type":"related"},{"name":"autosomal dominant intermediate Charcot-Marie-Tooth disease type A","type":"exact"}],"termid":"MONDO:0011675","terms_by_termid":{"MONDO:0011675":null},"xrefs":{"Monarch":{"xref_id":"0011675"}}}


id: MONDO:0009889
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited disorder characterized by the development of cysts affecting the collecting ducts. It is frequently associated with hepatic involvement.","definition_xrefs":["Orphanet:731"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"polycystic kidney disease","termid":"MONDO:0020642"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005240"],"is_obsolete":false,"name":"autosomal recessive polycystic kidney disease","secondary_identifiers":["NANDO:1200369","DOID:0110861","ICD9:753.14","SCTID:28770003","NCIT:C84579","GARD:8378","MEDGEN:39076","NANDO:2200154","icd11.foundation:1424110943","NORD:831","UMLS:C0085548","MedDRA:10036047"],"synonyms":[{"name":"AR-PKD","type":"exact"},{"name":"ARPKD","type":"exact"},{"name":"PKHD1","type":"related"},{"name":"autosomal recessive polycystic kidney","type":"exact"},{"name":"polycystic kidney and hepatic disease 1","type":"narrow"},{"name":"polycystic kidney disease, autosomal recessive","type":"exact"},{"name":"polycystic kidney disease, infantile type","type":"exact"},{"name":"polycystic kidney disease, infantile, type I","type":"narrow"}],"termid":"MONDO:0009889","xrefs":{"Monarch":{"xref_id":"0009889"}}}


id: GO:0044672
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multifunctional enzyme complex composed of five different polypeptides that catalyzes the decarbonylation of acetyl-CoA, cleaves the C-C and C-S bonds in the acetyl moiety of acetyl-CoA, oxidizes the carbonyl group to CO2 and transfers the methyl group to tetrahydrosarcinapterin. These reactions are important for methanogenesis.","definition_xrefs":["PMID:8955306","GOC:mengo_curators","PMID:7693685","PMID:11607176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"acetyl-CoA decarbonylase/synthase-carbon monoxide dehydrogenase complex","synonyms":[{"name":"CO dehydrogenase complex","type":"broad"},{"name":"CO dehydrogenase/acetyl-CoA synthase complex","type":"exact"},{"name":"CODH","type":"broad"},{"name":"CODH/ACS complex","type":"exact"},{"name":"carbon monoxide dehydrogenase","type":"broad"},{"name":"carbon-monoxide:(acceptor) oxidoreductase complex","type":"broad"}],"termid":"GO:0044672"}


id: PBO:0044029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CS pseudogene 3","termid":"PBO:0044029"}


id: MONDO:0013889
data:
  {"annotated_genes":["SJAG_04956"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85363],"is_not":false,"summary":null,"term":"MONDO:0013889"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"osteogenesis imperfecta and a reduction of bone mineral density.","termid":"MONDO:0800064"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04956":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"short stature-optic atrophy-Pelger-HuC+t anomaly syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:614800","UMLS:C3541319","GARD:10945","MEDGEN:762020","Orphanet:391677"],"synonyms":[{"name":"short stature with optic atrophy and Pelger-Huët anomaly syndrome","type":"related"},{"name":"short stature, optic nerve atrophy, and Pelger-Huet anomaly","type":"related"},{"name":"short stature-optic atrophy-Pelger-HuC+t anomaly syndrome","type":"exact"},{"name":"short stature-optic atrophy-Pelger-Huët anomaly syndrome","type":"related"},{"name":"soph","type":"related"},{"name":"soph syndrome","type":"exact"}],"termid":"MONDO:0013889","terms_by_termid":{"MONDO:0013889":null},"xrefs":{"Monarch":{"xref_id":"0013889"}}}


id: PBO:0090822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human RAP1 ortholog, GTPase exchange factor, Zfs1 target number 1","termid":"PBO:0090822"}


id: GO:0000160
data:
  {"annotated_genes":["SJAG_00318","SJAG_02498","SJAG_00256","SJAG_00331","SJAG_02472","SJAG_02183","SJAG_06592","SJAG_01587"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65737,66052,68941,90362,94451,110964,111615,117405],"is_not":false,"summary":null,"term":"GO:0000160"}]},"cv_name":"biological_process","definition":"A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.","definition_xrefs":["PMID:9191038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00256":null,"SJAG_00318":null,"SJAG_00331":null,"SJAG_01587":null,"SJAG_02183":null,"SJAG_02472":null,"SJAG_02498":null,"SJAG_06592":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"phosphorelay signal transduction system","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"histidyl-aspartyl phosphorelay","type":"exact"}],"termid":"GO:0000160","terms_by_termid":{"GO:0000160":null}}


id: PBO:0029406
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_NADPH-hemoprotein_reductase_activity","termid":"PBO:0029406"}


id: GO:0050093
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: methanol + NAD+ = formaldehyde + H+ + NADH.","definition_xrefs":["RHEA:19401","EC:1.1.1.244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol dehydrogenase (NAD+) activity","termid":"GO:0004022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"methanol dehydrogenase (NAD+) activity","secondary_identifiers":["KEGG_REACTION:R00605","MetaCyc:METHANOL-DEHYDROGENASE-RXN"],"synonyms":[{"name":"methanol dehydrogenase activity","type":"broad"},{"name":"methanol:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0050093"}


id: PBO:0011120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase type 2A regulator, PTPA family Ypa1","termid":"PBO:0011120"}


id: PBO:0028425
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_sodium_fluoride","termid":"PBO:0028425"}


id: PR:O74407
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An aspartate--tRNA ligase, cytoplasmic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04853","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartate--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1223.07c","secondary_identifiers":["UniProtKB:O74407"],"synonyms":[{"name":"AspRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-DARS","type":"exact"},{"name":"aspartyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74407"}


id: GO:0030550
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of an acetylcholine receptor.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor inhibitor activity","termid":"GO:0030547"},{"relation_name":"is_a","term_name":"acetylcholine receptor regulator activity","termid":"GO:0030548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140678","GO:0098772","GO:0003674"],"is_obsolete":false,"name":"acetylcholine receptor inhibitor activity","termid":"GO:0030550"}


id: GO:0043094
data:
  {"annotated_genes":["SJAG_04067","SJAG_05029","SJAG_04467","SJAG_04709","SJAG_00957","SJAG_01383","SJAG_04713","SJAG_03362","SJAG_04264","SJAG_03708","SJAG_02293","SJAG_00134","SJAG_01070","SJAG_02179","SJAG_01404","SJAG_01859","SJAG_04712","SJAG_00707","SJAG_03298","SJAG_00419","SJAG_02689","SJAG_01970","SJAG_04123","SJAG_04354","SJAG_00252","SJAG_06634","SJAG_04953","SJAG_00533","SJAG_03614","SJAG_03096","SJAG_01781","SJAG_03881","SJAG_00309"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92732],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006168"},{"annotations":[115972],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"},{"annotations":[92733,115973],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[114046,92168],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[92949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[100998,92951],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[107654],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006190"},{"annotations":[99190,94760],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990355"},{"annotations":[106165,99842,111565,88982,91859,98211],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019509"},{"annotations":[88228],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[89861,88229,108770],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019358"},{"annotations":[97786,97785],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043174"},{"annotations":[87666],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1903931"},{"annotations":[88983,92734,114973,92952],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006166"},{"annotations":[114830,98882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009443"},{"annotations":[110969],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010144"},{"annotations":[96930,112947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043097"},{"annotations":[87661,89864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008655"},{"annotations":[98720,109591,109592],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036172"},{"annotations":[87662,114048,92169,91169,86680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"},{"annotations":[91170],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006223"},{"annotations":[92953],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"Any process which produces a useful metabolic compound from derivatives of it without de novo synthesis, as carried out by individual cells.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00134":null,"SJAG_00252":null,"SJAG_00309":null,"SJAG_00419":null,"SJAG_00533":null,"SJAG_00707":null,"SJAG_00957":null,"SJAG_01070":null,"SJAG_01383":null,"SJAG_01404":null,"SJAG_01781":null,"SJAG_01859":null,"SJAG_01970":null,"SJAG_02179":null,"SJAG_02293":null,"SJAG_02689":null,"SJAG_03096":null,"SJAG_03298":null,"SJAG_03362":null,"SJAG_03614":null,"SJAG_03708":null,"SJAG_03881":null,"SJAG_04067":null,"SJAG_04123":null,"SJAG_04264":null,"SJAG_04354":null,"SJAG_04467":null,"SJAG_04709":null,"SJAG_04712":null,"SJAG_04713":null,"SJAG_04953":null,"SJAG_05029":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular metabolic compound salvage","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043094","terms_by_termid":{"GO:0006166":null,"GO:0006168":null,"GO:0006169":null,"GO:0006190":null,"GO:0006223":null,"GO:0008655":null,"GO:0009443":null,"GO:0010144":null,"GO:0019358":null,"GO:0019509":null,"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0034355":null,"GO:0036172":null,"GO:0043097":null,"GO:0043174":null,"GO:0044206":null,"GO:0044209":null,"GO:0044211":null,"GO:1903931":null,"GO:1990355":null}}


id: GO:1902193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 2-methylbut-2-enoyl-CoA(4-).","definition_xrefs":["GOC:TermGenie","PMID:15574432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty-acyl-CoA catabolic process","termid":"GO:0036115"},{"relation_name":"is_a","term_name":"2-methylbut-2-enoyl-CoA(4-) metabolic process","termid":"GO:1902192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629","GO:0044248","GO:0006790","GO:0055086"],"is_obsolete":false,"name":"2-methylbut-2-enoyl-CoA(4-) catabolic process","synonyms":[{"name":"2-methylbut-2-enoyl-CoA(4-) breakdown","type":"exact"},{"name":"2-methylbut-2-enoyl-CoA(4-) catabolism","type":"exact"},{"name":"2-methylbut-2-enoyl-CoA(4-) degradation","type":"exact"}],"termid":"GO:1902193"}


id: PBO:0060145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial transcription rescue factor 1","termid":"PBO:0060145"}


id: GO:0071481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to X-ray","termid":"GO:0010165"},{"relation_name":"is_a","term_name":"cellular response to ionizing radiation","termid":"GO:0071479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to X-ray","synonyms":[{"name":"cellular response to X-ray radiation stimulus","type":"exact"}],"termid":"GO:0071481"}


id: GO:0008320
data:
  {"annotated_genes":["SJAG_03502","SJAG_02077","SJAG_02330","SJAG_02208","SJAG_03358","SJAG_01597","SJAG_00959","SJAG_01879","SJAG_04218","SJAG_00373","SJAG_03415","SJAG_03515","SJAG_00175","SJAG_04996","SJAG_05259","SJAG_01640","SJAG_03560"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97247,98623,105332,105337,106455,108488,108782,114364],"is_not":false,"summary":null,"term":"GO:0008320"},{"annotations":[110943,102461,98738,104351,90104,96081,99507,106729,106750],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015450"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a protein from one side of a membrane to the other.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule transmembrane transporter activity","termid":"GO:0022884"},{"relation_name":"is_a","term_name":"protein transporter activity","termid":"GO:0140318"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00175":null,"SJAG_00373":null,"SJAG_00959":null,"SJAG_01597":null,"SJAG_01640":null,"SJAG_01879":null,"SJAG_02077":null,"SJAG_02208":null,"SJAG_02330":null,"SJAG_03358":null,"SJAG_03415":null,"SJAG_03502":null,"SJAG_03515":null,"SJAG_03560":null,"SJAG_04218":null,"SJAG_04996":null,"SJAG_05259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0140318"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674","GO:0140318"],"is_obsolete":false,"name":"protein transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5244506","Reactome:R-HSA-184269","Reactome:R-HSA-9636375","Reactome:R-HSA-5250884","GO:0015266","Reactome:R-HSA-5229111","Reactome:R-HSA-9698930","Reactome:R-HSA-5336420","Reactome:R-HSA-5244404","Reactome:R-HSA-5244428","Reactome:R-HSA-1299475","Reactome:R-HSA-1268022","Reactome:R-HSA-5250616","GO:0015463","Reactome:R-HSA-5210947","Reactome:R-HSA-5246514","Reactome:R-HSA-5250972","Reactome:R-HSA-3149434","Reactome:R-HSA-5210943","Reactome:R-HSA-5228406","Reactome:R-HSA-9698933","Reactome:R-HSA-5205661"],"synonyms":[{"name":"protein channel activity","type":"related"}],"termid":"GO:0008320","terms_by_termid":{"GO:0008320":null,"GO:0015450":null}}


id: GO:0046941
data:
  {"annotated_genes":["SJAG_02309"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91960],"is_not":false,"summary":null,"term":"GO:0046941"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-azetidine-2-carboxylic acid + acetyl-CoA = CoA-SH + N-acetyl azetidine-2-carboxylic acid.","definition_xrefs":["PMID:12761200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetyltransferase activity","termid":"GO:0008080"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"azetidine-2-carboxylic acid acetyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0046941","terms_by_termid":{"GO:0046941":null}}


id: FYPO:0007472
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which histone exchange is abnormal. Histone exchange is replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.","definition_xrefs":["GO:0043486","PMID:31315658","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal dynamic protein localization pattern","termid":"FYPO:0006606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal histone turnover","termid":"FYPO:0007472"}


id: MOD:00602
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue amino or imino group with an methyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N-methylated residue","synonyms":[{"name":"NMeRes","type":"exact"}],"termid":"MOD:00602"}


id: PBO:0091542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane inorganic phosphate transmembrane transporter Pho842","termid":"PBO:0091542"}


id: MONDO:0004654
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pyomyositis (obsolete MONDO:0004654)","termid":"MONDO:0004654","xrefs":{"Monarch":{"xref_id":"0004654"}}}


id: PR:Q9UTE4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sno1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTE4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized glutaminase C222.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC222.08c","synonyms":[{"name":"Spom972h-sno1","type":"exact"}],"termid":"PR:Q9UTE4"}


id: PBO:0038948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acireductone dioxygenase 1 pseudogene 3","termid":"PBO:0038948"}


id: MONDO:0042603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sanderson-Fraser syndrome","secondary_identifiers":["MESH:C537232","MEDGEN:419081","UMLS:C2931450"],"synonyms":[{"name":"Sanderson Fraser syndrome","type":"related"},{"name":"proptosis, Robin association, clenched hands, and multiple abnormalities","type":"related"}],"termid":"MONDO:0042603","xrefs":{"Monarch":{"xref_id":"0042603"}}}


id: PBO:0085742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in translation inhibition and nonsense-mediated decay; interacts with cap binding protein Cdc33p and with Nam7p; localizes to P-bodies upon glucose starvation; mRNA abundance regulated by mRNA decay factors; EBS1 has a paralog, EST1, that arose from the whole genome duplication","termid":"PBO:0085742"}


id: GO:0034071
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + aminoglycoside = ADP + phosphoaminoglycoside.","definition_xrefs":["GOC:cb","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016301","GO:0016740"],"is_obsolete":false,"name":"aminoglycoside phosphotransferase activity","secondary_identifiers":["EC:2.7.1.190"],"synonyms":[{"name":"aminoglycoside kinase activity","type":"exact"}],"termid":"GO:0034071"}


id: MONDO:0013000
data:
  {"annotated_genes":["SJAG_01372"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84688],"is_not":false,"summary":null,"term":"MONDO:0013000"}]},"cv_name":"mondo","definition":"An extremely rare form of acute hepatic porphyria characterized by neuro-visceral attacks without cutaneous manifestations.","direct_ancestors":[{"relation_name":"is_a","term_name":"hepatic porphyria","termid":"MONDO:0002520"},{"relation_name":"is_a","term_name":"inherited porphyria","termid":"MONDO:0019142"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01372":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0019142"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0019142","MONDO:0004335","MONDO:0002515","MONDO:0005093"],"is_obsolete":false,"name":"porphyria due to ALA dehydratase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:100924","MESH:C562618","OMIM:612740","MEDGEN:78659","UMLS:C0268328","GARD:16937","NCIT:C133887","NORD:747"],"synonyms":[{"name":"5-aminolevulinic acid dehydratase deficiency porphyria","type":"related"},{"name":"ALA dehydratase deficiency pophyria","type":"related"},{"name":"ALAD Porphyria","type":"exact"},{"name":"ALAD deficiency","type":"related"},{"name":"ALAD porphyria","type":"exact"},{"name":"ALAD-related porphyria","type":"exact"},{"name":"Delta-aminolevulinate dehydratase deficiency","type":"related"},{"name":"Doss porphyria","type":"related"},{"name":"Lead poisoning, susceptibility to","type":"related"},{"name":"acute hepatic porphyria","type":"exact"},{"name":"aminolevulinate dehydratase deficiency porphyria","type":"related"},{"name":"porphobilinogen synthase deficiency","type":"related"},{"name":"porphyria due to ALAD deficiency","type":"exact"},{"name":"porphyria due to delta-aminolevulinate dehydratase deficiency","type":"exact"},{"name":"porphyria of Doss","type":"exact"},{"name":"porphyria, ALAD","type":"related"},{"name":"porphyria, acute hepatic","type":"related"}],"termid":"MONDO:0013000","terms_by_termid":{"MONDO:0013000":null},"xrefs":{"Monarch":{"xref_id":"0013000"}}}


id: PBO:0085517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S18 and bacterial S13; RPS18A has a paralog, RPS18B, that arose from the whole genome duplication; protein increases in abundance and relocalizes from cytoplasm to nuclear foci upon DNA replication stress","termid":"PBO:0085517"}


id: GO:0014065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A series of reactions within the signal-receiving cell, mediated by the intracellular phosphatidylinositol 3-kinase (PI3K). Many cell surface receptor linked signaling pathways signal through PI3K to regulate numerous cellular functions.","definition_xrefs":["GOC:ef","PMID:22525052","Wikipedia:PI3K"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphatidylinositol 3-kinase signaling (obsolete GO:0014065)","synonyms":[{"name":"PI 3-kinase cascade","type":"exact"},{"name":"PI3K cascade","type":"exact"},{"name":"PI3K signal transduction","type":"exact"},{"name":"PI3K signaling","type":"exact"},{"name":"phosphatidylinositol 3-kinase cascade","type":"related"},{"name":"phosphatidylinositol 3-kinase signal transduction","type":"exact"},{"name":"phosphoinositide 3-kinase cascade","type":"exact"}],"termid":"GO:0014065"}


id: GO:0007249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An intracellular signaling cassette characterized by the I-kappaB-kinase (IKK)-dependent activation of NF-kappaB, also known as the canonical NF-kappaB signaling cascade. The cascade begins with activation of a trimeric IKK complex (consisting of catalytic kinase subunits IKKalpha and/or IKKbeta, and the regulatory scaffold protein NEMO) and ends with the regulation of transcription of target genes by NF-kappaB. In a resting state, NF-kappaB dimers are bound to I-kappaB proteins, sequestering NF-kappaB in the cytoplasm. Phosphorylation of I-kappaB targets I-kappaB for ubiquitination and proteasomal degradation, thus releasing the NF-kappaB dimers, which can translocate to the nucleus to bind DNA and regulate transcription. The canonical NF-kappaB pathway is mainly stimulated by proinflammatory cytokines such as IL-1beta, tumor necrosis factor (TNF)-alpha, antigen ligands, and toll-like receptors (TLRs).","definition_xrefs":["PMID:12773372","PMID:34659217","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signaling cassette","termid":"GO:0141124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"canonical NF-kappaB signal transduction","synonyms":[{"name":"I-kappaB kinase/NF-kappaB cascade","type":"exact"},{"name":"I-kappaB kinase/NF-kappaB signal transduction","type":"exact"},{"name":"I-kappaB kinase/NF-kappaB signaling","type":"exact"},{"name":"NF-kappaB cascade","type":"broad"},{"name":"canonical NF-kappaB signaling cascade","type":"exact"},{"name":"p50-dependent NF-kappaB signaling","type":"related"}],"termid":"GO:0007249"}


id: MONDO:0020554
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Heiner syndrome, also called cow's milk hypersensitivity, is a food induced pulmonary hypersensiting syndrome that affects primarily infants and that is characterized by pulmonary hemosiderosis, digestive bleeding, anemia and poor growing, improving with elimination of cow's milk from the diet.","definition_xrefs":["Orphanet:99932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary pulmonary hemosiderosis","termid":"MONDO:0020553"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Heiner syndrome","secondary_identifiers":["SCTID:707441009","UMLS:C3873343","MEDGEN:844833","ICD10EXP:E83.1+","icd11.foundation:187112249","GARD:19714","ICD10EXP:J99.8*","ICD9:518.89"],"synonyms":[{"name":"cow's milk hypersensitivity","type":"exact"}],"termid":"MONDO:0020554","xrefs":{"Monarch":{"xref_id":"0020554"}}}


id: PR:O94441
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ypp1 gene.","definition_xrefs":["UniProtKB:O94441","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cargo-transport protein ypp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC637.04","synonyms":[{"name":"Spom972h-ypp1","type":"exact"}],"termid":"PR:O94441"}


id: PBO:0085970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; potentially phosphorylated by Cdc28p; YER158C has a paralog, AFR1, that arose from the whole genome duplication","termid":"PBO:0085970"}


id: PBO:0005100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fungal protein associated with endocytosis (predicted)","termid":"PBO:0005100"}


id: CHEBI:29014
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cordycepin","termid":"CHEBI:29014"}


id: MOD:00004
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Artifact entry from Unimod - OBSOLETE because organizational use is no longer required.","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00004 artifact (obsolete MOD:00004)","termid":"MOD:00004"}


id: GO:0004775
data:
  {"annotated_genes":["SJAG_01524","SJAG_03813"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89123,114107],"is_not":false,"summary":null,"term":"GO:0004775"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + succinate + CoA = ADP + succinyl-CoA + phosphate.","definition_xrefs":["RHEA:17661","PMID:9874242"],"direct_ancestors":[{"relation_name":"is_a","term_name":"succinate-CoA ligase activity","termid":"GO:0004774"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01524":null,"SJAG_03813":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"succinate-CoA ligase (ADP-forming) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R00405","EC:6.2.1.5","MetaCyc:SUCCCOASYN-RXN","Reactome:R-HSA-70997"],"synonyms":[{"name":"succinate thiokinase activity","type":"related"},{"name":"succinic thiokinase","type":"broad"},{"name":"succinyl coenzyme A synthetase","type":"broad"},{"name":"succinyl coenzyme A synthetase (adenosine diphosphate-forming) activity","type":"related"},{"name":"succinyl-CoA synthetase (ADP-forming) activity","type":"related"},{"name":"succinyl-CoA synthetase activity","type":"related"}],"termid":"GO:0004775","terms_by_termid":{"GO:0004775":null}}


id: FYPO:0001641
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-tyrosine measured in the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal cellular tyrosine level","synonyms":[{"name":"normal cellular L-tyrosine level","type":"exact"},{"name":"normal cellular tyrosine level during mitotic cell cycle","type":"related"},{"name":"normal cellular tyrosine level during vegetative growth","type":"exact"},{"name":"normal level of tyrosine in cell","type":"exact"}],"termid":"FYPO:0001641"}


id: GO:1904251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of bile acid metabolic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of steroid metabolic process","termid":"GO:0019218"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"regulates","term_name":"bile acid metabolic process","termid":"GO:0008206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"regulation of bile acid metabolic process","synonyms":[{"name":"regulation of bile acid metabolism","type":"exact"}],"termid":"GO:1904251"}


id: PR:P0CT76
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps2302 gene.","definition_xrefs":["UniProtKB:P0CT76","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S23-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP4H10.13","synonyms":[{"name":"Spom972h-rps2302","type":"exact"}],"termid":"PR:P0CT76"}


id: GO:0003293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an endocardial cushion cell give rise to a cell that is part of a heart valve.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiocyte differentiation","termid":"GO:0035051"},{"relation_name":"part_of","term_name":"heart valve development","termid":"GO:0003170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"heart valve cell differentiation","termid":"GO:0003293"}


id: GO:0016414
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2R)-2-O-[alpha-D-glucopyranosyl-(1->6)-alpha-D-glucopyranosyl]-glycerate + octanoyl-CoA = (2R)-2-O-[6-O-octanoyl-alpha-D-glucopyranosyl-(1->6)-alpha-D-glucopyranosyl]-glycerate + CoA.","definition_xrefs":["RHEA:56868"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016746","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"diglucosylglycerate octanoyltransferase activity","secondary_identifiers":["EC:2.3.1.273"],"synonyms":[{"name":"O-octanoyltransferase activity","type":"broad"}],"termid":"GO:0016414"}


id: PBO:0036345
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"URAcil requiring","termid":"PBO:0036345"}


id: GO:0140850
data:
  {"annotated_genes":["SJAG_02319","SJAG_03006"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[115347,117969],"is_not":false,"summary":null,"term":"GO:0140850"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a ubiquitin molecule to a histone 2B at the conserved C-terminal lysine (K) residue. The last K residue is at position 119 in fission yeast, 123 in budding yeast, and 120 in mammals.","definition_xrefs":["PMID:17363370","PMID:28624371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2B ubiquitin ligase activity","termid":"GO:0141054"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02319":null,"SJAG_03006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004842"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0019787","GO:0004842","GO:0016740","GO:0016746","GO:0003674","GO:0140096"],"is_obsolete":false,"name":"histone H2B C-terminal K residue ubiquitin ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"histone H2B conserved C-terminal lysine ubiquitin ligase activity","type":"exact"},{"name":"histone H2B-K120 ubiquitin ligase activity","type":"exact"},{"name":"histone H2BK120 ubiquitin ligase activity","type":"exact"},{"name":"histone ubiquitin ligase activity (H2B-K120 specific)","type":"exact"}],"termid":"GO:0140850","terms_by_termid":{"GO:0140850":null}}


id: PBO:0040835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BST2 interferon stimulated positive regulator","termid":"PBO:0040835"}


id: PBO:0046137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 5A2 pseudogene 1","termid":"PBO:0046137"}


id: MONDO:0011825
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"streptococcus, group A, severity of infection by","secondary_identifiers":["MEDGEN:375858","OMIM:607395","UMLS:C1846298"],"synonyms":[{"name":"streptococcus, group A, severity of infection by","type":"exact"}],"termid":"MONDO:0011825","xrefs":{"Monarch":{"xref_id":"0011825"}}}


id: PBO:0079752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uridine-cytidine kinase 1 like 1","termid":"PBO:0079752"}


id: GO:0150032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to lysosome.","definition_xrefs":["GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to lysosome","termid":"GO:0150031"},{"relation_name":"is_a","term_name":"positive regulation of protein localization","termid":"GO:1903829"},{"relation_name":"positively_regulates","term_name":"protein localization to lysosome","termid":"GO:0061462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to lysosome","termid":"GO:0150032"}


id: PBO:0053278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte immunoglobulin like receptor B4","termid":"PBO:0053278"}


id: GO:0045983
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving purine bases.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of purine nucleobase metabolic process","termid":"GO:0006141"},{"relation_name":"is_a","term_name":"positive regulation of nucleobase-containing compound metabolic process","termid":"GO:0045935"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"positively_regulates","term_name":"purine nucleobase metabolic process","termid":"GO:0006144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of purine nucleobase metabolic process","synonyms":[{"name":"activation of purine base metabolic process","type":"narrow"},{"name":"positive regulation of purine base metabolic process","type":"exact"},{"name":"positive regulation of purine base metabolism","type":"exact"},{"name":"stimulation of purine base metabolic process","type":"narrow"},{"name":"up regulation of purine base metabolic process","type":"exact"},{"name":"up-regulation of purine base metabolic process","type":"exact"},{"name":"upregulation of purine base metabolic process","type":"exact"}],"termid":"GO:0045983"}


id: PBO:0076912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFAP2A antisense RNA 1","termid":"PBO:0076912"}


id: FYPO:0005025
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic chromosome condensation does not occur in centromeric regions (i.e. adjacent to the kinetochores).","definition_xrefs":["PMID:21633354","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished mitotic chromosome condensation","termid":"FYPO:0003844"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0000641","FYPO:0000631","FYPO:0001985","FYPO:0005447","FYPO:0000337","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished mitotic chromosome centromere condensation","synonyms":[{"name":"abolished chromosome centromere condensation during mitotic cell cycle","type":"related"},{"name":"abolished mitotic chromosome centromere condensation during vegetative growth","type":"exact"},{"name":"abolished mitotic chromosome condensation at centromere","type":"exact"},{"name":"mitotic chromosome condensation abolished at centromere","type":"exact"},{"name":"mitotic chromosome kinetochore condensation","type":"exact"}],"termid":"FYPO:0005025"}


id: MOD:01489
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an N'-hydrogen atom of a histidine residue with the Applied Biosystems iTRAQ4plex-114 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"iTRAQ4plex-114 reporter+balance reagent acylated residue","termid":"MOD:01485"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent N-acylated residue","termid":"MOD:01709"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ4plex-114 reporter+balance reagent N'-acylated histidine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"iTRAQ4plex114","type":"related"}],"termid":"MOD:01489"}


id: MOD:01872
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cyclizes an S-carboxymethyl-L-cysteine residue to (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid with the loss of water.","definition_xrefs":["PubMed:12643538","Unimod:26"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"S-carboxymethyl-L-cysteine","termid":"MOD:01061"},{"relation_name":"is_a","term_name":"iodoacetic acid derivatized residue","termid":"MOD:00399"},{"relation_name":"is_a","term_name":"(R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid","termid":"MOD:00419"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"cyclized N-terminal S-carboxymethyl-L-cysteine","synonyms":[{"name":"(R)-5-oxoperhydro-1,4-thiazine-3-carboxylic acid","type":"exact"},{"name":"5-oxothiomorpholine-3-carboxylic acid","type":"exact"},{"name":"Otc","type":"exact"},{"name":"Pyro-carbamidomethyl","type":"related"},{"name":"S-carbamoylmethylcysteine cyclization (N-terminus)","type":"related"}],"termid":"MOD:01872"}


id: MONDO:0018181
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A blistering skin disorder caused by exfoliative toxins produced by Staphylococcus aureus infection. The toxins cause the formation of bullae and diffuse skin desquamation. The lesions may be localized or generalized, far away from the initial site of infection.","definition_xrefs":["NCIT:C85077"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"commensal bacterial infectious disease","termid":"MONDO:0000315"},{"relation_name":"is_a","term_name":"staphylococcus aureus infection","termid":"MONDO:0005545"},{"relation_name":"is_a","term_name":"staphylococcal toxemia","termid":"MONDO:0017592"},{"relation_name":"is_a","term_name":"skin disease caused by bacterial infection","termid":"MONDO:0024295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"staphylococcal scalded skin syndrome","secondary_identifiers":["Orphanet:36236","SCTID:277475006","MESH:D013206","UMLS:C0038165","GARD:13158","NORD:1781","EFO:0007473","ICD10CM:L00","DOID:9063","icd11.foundation:1554593739","ICD9:695.81","MedDRA:10041929","MEDGEN:52484","SCTID:200946001"],"synonyms":[{"name":"Ritter disease","type":"exact"},{"name":"Ritter's disease","type":"exact"},{"name":"SSSS","type":"exact"},{"name":"dermatitis exfoliativa neonatorum","type":"exact"},{"name":"generalised exfoliative disease","type":"exact"},{"name":"generalized exfoliative disease","type":"exact"},{"name":"pemphigus neonatorum","type":"exact"},{"name":"scalded skin syndrome","type":"exact"},{"name":"staphylococcal scalded skin syndrome","type":"exact"},{"name":"toxic epidermal necrolysis, subcorneal type","type":"exact"}],"termid":"MONDO:0018181","xrefs":{"Monarch":{"xref_id":"0018181"}}}


id: PBO:0071122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 124","termid":"PBO:0071122"}


id: MOD:00403
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-methionine residue to homoserine.","definition_xrefs":["OMSSA:56","DeltaMass:113","Unimod:10#M"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-methionine residue","termid":"MOD:00913"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homoserine","synonyms":[{"name":"Homoserine","type":"related"},{"name":"Homoserine formed from Met by CNBr treatment","type":"exact"},{"name":"Met->Hse","type":"related"},{"name":"ctermpephsem","type":"exact"}],"termid":"MOD:00403"}


id: PBO:0031364
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_L-azetidine-2-carboxylic_acid","termid":"PBO:0031364"}


id: PBO:0029998
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-small_P-bodies","termid":"PBO:0029998"}


id: PR:Q10087
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.08c gene.","definition_xrefs":["UniProtKB:Q10087","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized amino-acid permease C11D3.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.08c","synonyms":[{"name":"Spom972h-SPAC11D3.08c","type":"exact"}],"termid":"PR:Q10087"}


id: PBO:0064793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase, Mg2+/Mn2+ dependent 1L","termid":"PBO:0064793"}


id: PBO:0076455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transgelin 2 pseudogene 1","termid":"PBO:0076455"}


id: GO:0018807
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA + H2O = 2,6-dihydroxycyclohexane-1-carboxyl-CoA.","definition_xrefs":["UM-BBD_reactionID:r0204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds","termid":"GO:0016822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"6-hydroxycyclohex-1-ene-1-carboxyl-CoA hydratase activity","secondary_identifiers":["EC:3.7.1.21","RHEA:39651"],"termid":"GO:0018807"}


id: PBO:0033766
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_Rqh1_foci_during_cellular_response_to_ionizing_radiation","termid":"PBO:0033766"}


id: PBO:0060081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 28","termid":"PBO:0060081"}


id: MONDO:0002672
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of acinar adenocarcinoma of the prostate gland characterized by the presence of signet ring malignant cells.","definition_xrefs":["NCIT:C5535"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostatic acinar adenocarcinoma","termid":"MONDO:0002493"},{"relation_name":"is_a","term_name":"signet ring cell carcinoma","termid":"MONDO:0005092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"acinar prostate adenocarcinoma, signet ring variant","secondary_identifiers":["DOID:3504","MEDGEN:1835069","UMLS:C5787291"],"synonyms":[{"name":"acinar prostate adenocarcinoma, signet Ring variant","type":"exact"},{"name":"prostate gland signet ring cell carcinoma","type":"exact"},{"name":"prostate signet Ring cell carcinoma","type":"exact"},{"name":"prostate signet ring cell adenocarcinoma","type":"related"},{"name":"prostate signet ring cell carcinoma","type":"exact"},{"name":"signet Ring cell carcinoma of prostate","type":"exact"},{"name":"signet Ring cell carcinoma of the prostate","type":"exact"}],"termid":"MONDO:0002672","xrefs":{"Monarch":{"xref_id":"0002672"}}}


id: MONDO:0020225
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A cataract (disease) that is part of a larger syndrome.","definition_xrefs":["MONDO:patterns/syndromic"],"gene_count":0,"genotype_count":0,"name":"obsolete syndromic cataract (obsolete MONDO:0020225)","secondary_identifiers":["Orphanet:98641"],"synonyms":[{"name":"syndrome associated with cataract (disease)","type":"exact"},{"name":"syndromic cataract (disease)","type":"exact"}],"termid":"MONDO:0020225","xrefs":{"Monarch":{"xref_id":"0020225"}}}


id: GO:0031495
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of mating type switching.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mating type switching","termid":"GO:0031494"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"mating type switching","termid":"GO:0007533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mating type switching","synonyms":[{"name":"down regulation of mating type switching","type":"exact"},{"name":"down-regulation of mating type switching","type":"exact"},{"name":"downregulation of mating type switching","type":"exact"},{"name":"inhibition of mating type switching","type":"narrow"}],"termid":"GO:0031495"}


id: GO:0072265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the metanephric capsule are generated and organized. The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal capsule morphogenesis","termid":"GO:0072128"},{"relation_name":"part_of","term_name":"metanephric capsule development","termid":"GO:0072213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric capsule morphogenesis","termid":"GO:0072265"}


id: GO:1905041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of epithelium regeneration.","definition_xrefs":["GO_REF:0000058","GOC:BHF","GOC:TermGenie","PMID:23221517","GOC:BHF_miRNA","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"regulates","term_name":"epithelium regeneration","termid":"GO:1990399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of epithelium regeneration","synonyms":[{"name":"regulation of regeneration of epithelium","type":"exact"}],"termid":"GO:1905041"}


id: PBO:0047865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(2)(p13)","termid":"PBO:0047865"}


id: MONDO:0015006
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"epidermolysis bullosa simplex","termid":"MONDO:0017610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005093"],"is_obsolete":false,"name":"epidermolysis bullosa simplex 6, generalized, with scarring and hair loss","secondary_identifiers":["GARD:17951","UMLS:C4310631","Orphanet:508529","MEDGEN:934598","OMIM:617294"],"synonyms":[{"name":"EBSSH","type":"exact"},{"name":"epidermolysis bullosa simplex 6, generalized, with scarring and hair loss","type":"exact"},{"name":"epidermolysis bullosa simplex, generalized, with scarring and hair loss","type":"exact"},{"name":"epidermolysis bullosa simplex, generalized, with scarring and hair loss; EBSSH","type":"exact"},{"name":"generalised basal epidermolysis bullosa simplex with skin atrophy, scarring and hair loss","type":"exact"},{"name":"generalized basal epidermolysis bullosa simplex with skin atrophy, scarring and hair loss","type":"exact"}],"termid":"MONDO:0015006","xrefs":{"Monarch":{"xref_id":"0015006"}}}


id: GO:2000225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of testosterone biosynthetic process.","definition_xrefs":["GOC:obol","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of steroid biosynthetic process","termid":"GO:0010894"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of testosterone biosynthetic process","termid":"GO:2000224"},{"relation_name":"negatively_regulates","term_name":"testosterone biosynthetic process","termid":"GO:0061370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"negative regulation of testosterone biosynthetic process","termid":"GO:2000225"}


id: MONDO:0012041
data:
  {"annotated_genes":["SJAG_02261"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84993],"is_not":false,"summary":null,"term":"MONDO:0012041"}]},"cv_name":"mondo","definition":"An autosomal recessive hereditary neoplastic syndrome caused by mutations in the MUTYH gene on chromosome 1p34.1. It is characterized by the presence of multiple colorectal polyps that may progress to carcinoma. Development of gastric and small intestinal polyps may also occur.","definition_xrefs":["NCIT:C96520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"attenuated familial adenomatous polyposis","termid":"MONDO:0016362"},{"relation_name":"is_a","term_name":"classic familial adenomatous polyposis","termid":"MONDO:0021055"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"familial adenomatous polyposis 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3272841","MEDGEN:474474","GARD:10805","DOID:0080410","OMIM:608456","Orphanet:247798","MESH:C563924"],"synonyms":[{"name":"FAP2","type":"exact"},{"name":"MAP","type":"exact"},{"name":"MAP syndrome","type":"related"},{"name":"MUTYH-associated polyposis","type":"exact"},{"name":"MUTYH-related AFAP","type":"exact"},{"name":"MUTYH-related attenuated FAP","type":"exact"},{"name":"MUTYH-related attenuated familial adenomatous polyposis","type":"exact"},{"name":"MUTYH-related attenuated familial polyposis coli","type":"exact"},{"name":"MYH-associated polyposis","type":"related"},{"name":"adenomas, multiple colorectal, autosomal recessive","type":"exact"},{"name":"autosomal recessive familial adenomatous polyposis","type":"related"},{"name":"autosomal recessive multiple colorectal adenomas","type":"related"},{"name":"colorectal adenomatous polyposis, autosomal recessive","type":"exact"},{"name":"familial adenomatous polyposis 2","type":"exact"},{"name":"familial adenomatous polyposis, 2","type":"exact"},{"name":"familial adenomatous polyposis, type 2","type":"exact"}],"termid":"MONDO:0012041","terms_by_termid":{"MONDO:0012041":null},"xrefs":{"Monarch":{"xref_id":"0012041"}}}


id: PBO:0060792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase core subunit S3","termid":"PBO:0060792"}


id: PBO:0041904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"core-binding factor subunit beta","termid":"PBO:0041904"}


id: GO:0015040
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. An electron transfer flavoprotein that functions as a housekeeping protein that links acyl-CoA dehydrogenase reactions with the respiratory chain, such as in the fatty acid degradation pathway.","definition_xrefs":["PMID:8599534"],"gene_count":0,"genotype_count":0,"name":"obsolete electron transfer flavoprotein, group I (obsolete GO:0015040)","synonyms":[{"name":"electron transfer flavoprotein, group I","type":"exact"}],"termid":"GO:0015040"}


id: GO:0035126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring after embryonic development, by which the anatomical structures of the genitalia are generated and organized.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genitalia morphogenesis","termid":"GO:0035112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic genitalia morphogenesis","synonyms":[{"name":"post-embryonic genital morphogenesis","type":"related"}],"termid":"GO:0035126"}


id: MONDO:0013892
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Glomerulonephritis characterized by C3 accumulation with little or absent deposition of immunoglobulin, in the absence of ultrastructural electron-dense transformation seen in dense deposit disease.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary nephritis","termid":"MONDO:0005334"},{"relation_name":"is_a","term_name":"non-immunoglobulin-mediated membranoproliferative glomerulonephritis","termid":"MONDO:0018013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"C3 glomerulonephritis","secondary_identifiers":["UMLS:C4055342","GARD:16487","MEDGEN:884569","NCIT:C123043","OMIM:614809","Orphanet:329931"],"synonyms":[{"name":"CFHR5 deficiency","type":"related"},{"name":"complement-mediated membranoproliferative glomerulonephritis","type":"exact"},{"name":"nephropathy due to CFHR5 deficiency","type":"exact"}],"termid":"MONDO:0013892","xrefs":{"Monarch":{"xref_id":"0013892"}}}


id: PBO:0045960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGFR interacting lncRNA","termid":"PBO:0045960"}


id: GO:0007018
data:
  {"annotated_genes":["SJAG_01662","SJAG_01224","SJAG_04884","SJAG_01805","SJAG_03673","SJAG_01297","SJAG_01775","SJAG_02624","SJAG_04001","SJAG_03683","SJAG_03540","SJAG_05220","SJAG_01863","SJAG_03073","SJAG_02509","SJAG_01370","SJAG_02737","SJAG_04143","SJAG_05185","SJAG_00368","SJAG_00918","SJAG_05319","SJAG_05266","SJAG_00851","SJAG_02045","SJAG_04387","SJAG_02286","SJAG_00773","SJAG_04003","SJAG_02814","SJAG_00397","SJAG_02431","SJAG_04745","SJAG_02336","SJAG_04597","SJAG_00042","SJAG_04076","SJAG_00113","SJAG_00140","SJAG_03835","SJAG_02848","SJAG_02731","SJAG_03437","SJAG_01371","SJAG_01211","SJAG_01546","SJAG_00332","SJAG_00794","SJAG_01613","SJAG_00930","SJAG_02761","SJAG_02561"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61059,88166,102721],"is_not":false,"summary":null,"term":"GO:0007018"},{"annotations":[117269],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051305"},{"annotations":[100614,91042,102142,86969,99913,94401,90200,96770,110192,110367,102433,113077,90590,116076,110545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030989"},{"annotations":[101944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034643"},{"annotations":[110369,100615,105748],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032118"},{"annotations":[98416,99568,101620,92992,94506,108293,117787,117271,115058],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990571"},{"annotations":[109060,93969],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099606"},{"annotations":[98421],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051012"},{"annotations":[98422],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031534"},{"annotations":[107409,99570,103071],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007079"},{"annotations":[100625],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0062168"},{"annotations":[103189,108764,116080,113079,100626,111271,106588],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098863"},{"annotations":[96845,98428],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090561"},{"annotations":[90592,94403,96772,86973,98429],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000743"},{"annotations":[98430],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031535"},{"annotations":[93613],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1902854"},{"annotations":[102927],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099117"},{"annotations":[107418,99574,117791,103079],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140210"},{"annotations":[116050,113230,106663,99706,109045,88350,90188,97826,108035,95970,88954],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990976"},{"annotations":[116081],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140405"},{"annotations":[90354],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010970"}]},"cv_name":"biological_process","definition":"A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. 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id: PBO:0045978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EH domain containing 4","termid":"PBO:0045978"}


id: PBO:0061498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding repressor of NFAT","termid":"PBO:0061498"}


id: GO:0030111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the activity of the Wnt signal transduction pathway.","definition_xrefs":["GOC:dph","GOC:tb","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"regulates","term_name":"Wnt signaling pathway","termid":"GO:0016055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of Wnt signaling pathway","secondary_identifiers":["GO:0008590"],"synonyms":[{"name":"regulation of Wnt receptor signaling pathway","type":"exact"},{"name":"regulation of Wnt receptor signalling pathway","type":"exact"},{"name":"regulation of Wnt-activated signaling pathway","type":"exact"},{"name":"regulation of frizzled signaling pathway","type":"exact"},{"name":"regulation of frizzled signalling pathway","type":"exact"}],"termid":"GO:0030111"}


id: PBO:0031580
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_septation","termid":"PBO:0031580"}


id: GO:1905938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of germ cell proliferation.","definition_xrefs":["GOC:TermGenie","PMID:15342467","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of germ cell proliferation","termid":"GO:1905936"},{"relation_name":"positively_regulates","term_name":"germ cell proliferation","termid":"GO:0036093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of germ cell proliferation","synonyms":[{"name":"activation of germ cell proliferation","type":"narrow"},{"name":"up regulation of germ cell proliferation","type":"exact"},{"name":"up-regulation of germ cell proliferation","type":"exact"},{"name":"upregulation of germ cell proliferation","type":"exact"}],"termid":"GO:1905938"}


id: MONDO:0015311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"This syndrome is characterized by the presence of a unilateral angioma on the face and autistic developmental problems characterized by language delay and atypical social interactions.","definition_xrefs":["Orphanet:137911"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autism-facial port-wine stain syndrome","secondary_identifiers":["GARD:10303"],"synonyms":[{"name":"autism with port-wine stain","type":"related"}],"termid":"MONDO:0015311","xrefs":{"Monarch":{"xref_id":"0015311"}}}


id: PBO:0080377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS9 domain containing 1","termid":"PBO:0080377"}


id: PBO:0040160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acid sensing ion channel subunit family member 5","termid":"PBO:0040160"}


id: GO:1900748
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular endothelial growth factor signaling pathway.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of vascular endothelial growth factor signaling pathway","termid":"GO:1900746"},{"relation_name":"positively_regulates","term_name":"vascular endothelial growth factor signaling pathway","termid":"GO:0038084"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of vascular endothelial growth factor signaling pathway","synonyms":[{"name":"activation of VEGF signaling","type":"exact"},{"name":"activation of VEGF-activated signaling pathway","type":"exact"},{"name":"activation of vascular endothelial growth factor signaling pathway","type":"narrow"},{"name":"activation of vascular endothelial growth factor signalling pathway","type":"exact"},{"name":"positive regulation of VEGF signaling","type":"exact"},{"name":"positive regulation of VEGF-activated signaling pathway","type":"exact"},{"name":"positive regulation of vascular endothelial growth factor signalling pathway","type":"exact"},{"name":"up regulation of VEGF signaling","type":"exact"},{"name":"up regulation of VEGF-activated signaling pathway","type":"exact"},{"name":"up regulation of vascular endothelial growth factor signaling pathway","type":"exact"},{"name":"up regulation of vascular endothelial growth factor signalling pathway","type":"exact"},{"name":"up-regulation of VEGF signaling","type":"exact"},{"name":"up-regulation of VEGF-activated signaling pathway","type":"exact"},{"name":"up-regulation of vascular endothelial growth factor signaling pathway","type":"exact"},{"name":"up-regulation of vascular endothelial growth factor signalling pathway","type":"exact"},{"name":"upregulation of VEGF signaling","type":"exact"},{"name":"upregulation of VEGF-activated signaling pathway","type":"exact"},{"name":"upregulation of vascular endothelial growth factor signaling pathway","type":"exact"},{"name":"upregulation of vascular endothelial growth factor signalling pathway","type":"exact"}],"termid":"GO:1900748"}


id: MONDO:0004039
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"extrahepatic bile duct adenocarcinoma","termid":"MONDO:0002665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992","MONDO:0002515"],"is_obsolete":false,"name":"papillary extrahepatic bile duct adenocarcinoma","secondary_identifiers":["UMLS:C0861858","DOID:6931","MEDGEN:167831"],"termid":"MONDO:0004039","xrefs":{"Monarch":{"xref_id":"0004039"}}}


id: PBO:0082719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Paf1p complex; binds to and modulates the activity of RNA polymerases I and II; required for expression of certain genes, modification of some histones, and telomere maintenance; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay; protein abundance increases in response to DNA replication stress; human homolog, parafibromin, is a tumour suppressor linked to breast, renal and gastric cancers","termid":"PBO:0082719"}


id: MONDO:0004176
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An osteosarcoma arising from the soft tissue, and occurring during childhood.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extraosseous osteosarcoma","termid":"MONDO:0002621"},{"relation_name":"is_a","term_name":"pediatric osteosarcoma","termid":"MONDO:0002623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"childhood extraosseous osteosarcoma","secondary_identifiers":["NCIT:C27376","DOID:7297","MEDGEN:232060","UMLS:C1332968"],"synonyms":[{"name":"childhood extraosseous osteosarcoma","type":"exact"},{"name":"childhood extraskeletal osteosarcoma","type":"exact"},{"name":"extraosseous osteosarcoma of childhood","type":"exact"},{"name":"paediatric extraosseous osteosarcoma","type":"exact"},{"name":"paediatric extraskeletal osteosarcoma","type":"exact"},{"name":"pediatric extraosseous osteosarcoma","type":"exact"},{"name":"pediatric extraskeletal osteosarcoma","type":"exact"}],"termid":"MONDO:0004176","xrefs":{"Monarch":{"xref_id":"0004176"}}}


id: MONDO:0008385
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhiny","secondary_identifiers":["MEDGEN:401188","OMIM:180360","UMLS:C1867222","MESH:C566708"],"synonyms":[{"name":"craniorhiny","type":"related"},{"name":"rhiny","type":"exact"}],"termid":"MONDO:0008385","xrefs":{"Monarch":{"xref_id":"0008385"}}}


id: PBO:0076284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYF2 pre-mRNA splicing factor pseudogene 1","termid":"PBO:0076284"}


id: GO:0019342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of trypanothione (N1,N6,-bis(glutathionyl)spermidine) in two steps from glutathione and spermidine via an N1- or N8-glutathionylspermidine intermediate. Trypanothione appears to be an essential redox intermediate in intracellular thiol redox regulation. It also plays a role in protecting against oxidative stress.","definition_xrefs":["MetaCyc:TRYPANOSYN-PWY","PMID:9677355"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trypanothione metabolic process","termid":"GO:0046206"},{"relation_name":"is_a","term_name":"glutathione derivative biosynthetic process","termid":"GO:1901687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"trypanothione biosynthetic process","synonyms":[{"name":"trypanothione anabolism","type":"exact"},{"name":"trypanothione biosynthesis","type":"exact"},{"name":"trypanothione formation","type":"exact"},{"name":"trypanothione synthesis","type":"exact"}],"termid":"GO:0019342"}


id: MONDO:0018328
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial hypercholesterolemia","termid":"MONDO:0005439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"homozygous familial hypercholesterolemia","secondary_identifiers":["GARD:10416","NANDO:2201255","SCTID:238078005","NANDO:1200394","Orphanet:391665","UMLS:C0342881","MESH:D000090542","MEDGEN:575266"],"synonyms":[{"name":"HoFH","type":"exact"},{"name":"homozygous familial hypercholesterolemia","type":"exact"}],"termid":"MONDO:0018328","xrefs":{"Monarch":{"xref_id":"0018328"}}}


id: PBO:0067992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 294","termid":"PBO:0067992"}


id: MONDO:0002260
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory disease involving a pathogenic inflammatory response in the apocrine sweat gland.","definition_xrefs":["MONDO:patterns/inflammatory_disease_by_site"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"},{"relation_name":"is_a","term_name":"apocrine sweat gland disorder","termid":"MONDO:0024467"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"hidradenitis","secondary_identifiers":["SCTID:69741000","ICD9:705.83","DOID:2282","MEDGEN:43115","MESH:D016575","NCIT:C32132","UMLS:C0085160"],"synonyms":[{"name":"Hydradenitis","type":"exact"},{"name":"apocrine sweat gland","type":"exact"},{"name":"apocrine sweat gland inflammation","type":"exact"},{"name":"inflammation of apocrine sweat gland","type":"exact"}],"termid":"MONDO:0002260","xrefs":{"Monarch":{"xref_id":"0002260"}}}


id: MONDO:0013702
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive non-syndromic intellectual disability in which the cause of the disease is a mutation in the LINS1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive non-syndromic intellectual disability","termid":"MONDO:0019502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0006025","MONDO:0005066"],"is_obsolete":false,"name":"intellectual disability, autosomal recessive 27","secondary_identifiers":["OMIM:614340","MEDGEN:482168","DOID:0081193","GARD:22555","UMLS:C3280538"],"synonyms":[{"name":"LINS1 autosomal recessive non-syndromic intellectual disability","type":"exact"},{"name":"MRT27","type":"related"},{"name":"autosomal recessive non-syndromic intellectual disability caused by mutation in LINS1","type":"exact"},{"name":"intellectual developmental disorder, autosomal recessive 27","type":"exact"},{"name":"intellectual disability, autosomal recessive 27","type":"exact"},{"name":"intellectual disability, autosomal recessive type 27","type":"exact"},{"name":"mental retardation, autosomal recessive 27","type":"related"},{"name":"mental retardation, autosomal recessive type 27","type":"exact"}],"termid":"MONDO:0013702","xrefs":{"Monarch":{"xref_id":"0013702"}}}


id: GO:1990542
data:
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id: GO:0015884
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  {"annotated_genes":["SJAG_03503"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73190],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904947"}]},"cv_name":"biological_process","definition":"The directed movement of folic acid (pteroylglutamic acid) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transport","termid":"GO:0006835"},{"relation_name":"is_a","term_name":"amide transport","termid":"GO:0042886"},{"relation_name":"is_a","term_name":"vitamin transport","termid":"GO:0051180"},{"relation_name":"is_a","term_name":"modified amino acid transport","termid":"GO:0072337"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03503":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"folic acid transport","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"folate transport","type":"exact"},{"name":"vitamin B9 transport","type":"exact"},{"name":"vitamin M transport","type":"exact"}],"termid":"GO:0015884","terms_by_termid":{"GO:1904947":null}}


id: PBO:0112847
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asynchronous replication autosomal RNA 8-1","termid":"PBO:0112847"}


id: MONDO:0005840
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  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete mast-cell leukemia (obsolete MONDO:0005840)","termid":"MONDO:0005840","xrefs":{"Monarch":{"xref_id":"0005840"}}}


id: PBO:0038298
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  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial_sequence","termid":"PBO:0038298"}


id: MOD:01477
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to an 3'-fluoro-L-fluorophenylalanine.","definition_xrefs":["PubMed:8172898","PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monofluorinated L-phenylalanine","termid":"MOD:01227"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-fluoro-L-phenylalanine","synonyms":[{"name":"3-fluorophenylalanine","type":"exact"},{"name":"m-fluorophenylalanine","type":"exact"},{"name":"meta-fluorophenylalanine","type":"exact"}],"termid":"MOD:01477"}


id: MONDO:0014358
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"autosomal dominant non-syndromic intellectual disability","termid":"MONDO:0015802"},{"relation_name":"is_a","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"intellectual disability, autosomal dominant","termid":"MONDO:0100172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"AHDC1-related intellectual disability - obstructive sleep apnea - mild dysmorphism syndrome","secondary_identifiers":["MEDGEN:862856","Orphanet:412069","DOID:0070055","UMLS:C4014419","OMIM:615829","GARD:13409"],"synonyms":[{"name":"AHDC1-related intellectual disability - obstructive sleep apnea - mild dysmorphism syndrome","type":"exact"},{"name":"MRD25","type":"exact"},{"name":"Xia-Gibbs syndrome","type":"exact"},{"name":"autosomal dominant intellectual disability 25","type":"exact"},{"name":"autosomal dominant mental retardation 25","type":"exact"},{"name":"intellectual disability, autosomal dominant 25","type":"related"},{"name":"mental retardation, autosomal dominant 25","type":"related"}],"termid":"MONDO:0014358","xrefs":{"Monarch":{"xref_id":"0014358"}}}


id: FYECO:0000344
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  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which manganese sulfate was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ MnSO4","synonyms":[{"name":"+ manganese sulfate","type":"exact"}],"termid":"FYECO:0000344"}


id: MONDO:0025453
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic respiratory disease caused by the visna-maedi virus. It was formerly believed to be identical with jaagsiekte (pulmonary adenomatosis, ovine) but is now recognized as a separate entity.","definition_xrefs":["MESH:D011021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sheep disease","termid":"MONDO:0024985"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pneumonia, progressive interstitial, of sheep","synonyms":[{"name":"Maedi","type":"related"},{"name":"progressive interstitial pneumonia of sheep","type":"related"}],"termid":"MONDO:0025453","xrefs":{"Monarch":{"xref_id":"0025453"}}}


id: MONDO:0007094
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any amelogenesis imperfecta in which the cause of the disease is a mutation in the LAMB3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amelogenesis imperfecta type 1","termid":"MONDO:0015047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenesis imperfecta type 1A","secondary_identifiers":["UMLS:C4011403","MEDGEN:859840","OMIM:104530","DOID:0110054","GARD:15038","MESH:C538240"],"synonyms":[{"name":"AI1A","type":"exact"},{"name":"LAMB3 amelogenesis imperfecta","type":"exact"},{"name":"amelogenesis imperfecta caused by mutation in LAMB3","type":"exact"},{"name":"amelogenesis imperfecta hypoplastic type IA","type":"exact"},{"name":"amelogenesis imperfecta local hypoplastic","type":"related"},{"name":"amelogenesis imperfecta type IA","type":"exact"},{"name":"amelogenesis imperfecta, hypoplastic type 1A","type":"related"},{"name":"amelogenesis imperfecta, type 1A","type":"related"},{"name":"amelogenesis imperfecta, type IA","type":"related"},{"name":"local hypoplastic amelogenesis imperfecta","type":"related"}],"termid":"MONDO:0007094","xrefs":{"Monarch":{"xref_id":"0007094"}}}


id: PATO:0000056
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  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Trophic_level"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organismal quality","termid":"PATO:0001995"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trophic quality","synonyms":[{"name":"nutritional quality","type":"related"}],"termid":"PATO:0000056"}


id: MONDO:0000451
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A multiple sclerosis that is characterized by steady worsening of neurologic functioning, without any distinct relapses or periods of remission. The rate of progression may vary over time, with occasional plateaus or temporary improvements, but the progression is continuous.","definition_xrefs":["DOID:0050784"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic progressive multiple sclerosis","termid":"MONDO:0005284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005559"],"is_obsolete":false,"name":"primary progressive multiple sclerosis","secondary_identifiers":["MEDGEN:155968","SCTID:428700003","UMLS:C0751964","NANDO:1200025","NANDO:2201320","icd11.foundation:1020720762","EFO:0008520"],"synonyms":[{"name":"PPMS","type":"exact"},{"name":"primary-progressive MS","type":"exact"}],"termid":"MONDO:0000451","xrefs":{"Monarch":{"xref_id":"0000451"}}}


id: PBO:0026723
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transcript_length","termid":"PBO:0026723"}


id: GO:0018971
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, that occur in the absence of oxygen.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toluene metabolic process","termid":"GO:0018970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anaerobic toluene metabolic process","secondary_identifiers":["UM-BBD_pathwayID:tol2"],"synonyms":[{"name":"anaerobic toluene metabolism","type":"exact"}],"termid":"GO:0018971"}


id: MONDO:0010097
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"coagulation protein disease","termid":"MONDO:0002242"},{"relation_name":"is_a","term_name":"inherited blood coagulation disorder","termid":"MONDO:0021181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"Tatsumi factor deficiency","secondary_identifiers":["MEDGEN:336460","MESH:C564787","UMLS:C1848931","OMIM:272650"],"synonyms":[{"name":"Tatsumi factor deficiency","type":"exact"}],"termid":"MONDO:0010097","xrefs":{"Monarch":{"xref_id":"0010097"}}}


id: GO:0016941
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a natriuretic peptide and transmitting the signal to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide receptor activity","termid":"GO:0001653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"natriuretic peptide receptor activity","termid":"GO:0016941"}


id: GO:0000243
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  {"annotated_genes":["SJAG_01301","SJAG_00058","SJAG_03995","SJAG_00225","SJAG_05009","SJAG_00147","SJAG_03983","SJAG_00249","SJAG_01654"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[90765,94363,97024,100428,102377,105026,109792,112405,117838],"is_not":false,"summary":null,"term":"GO:0000243"}]},"cv_name":"cellular_component","definition":"A spliceosomal complex that is formed by association of the U1 snRNP with the 5' splice site of an unspliced intron in an RNA transcript.","definition_xrefs":["ISBN:0879695897","PMID:9150140","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"U2-type spliceosomal complex","termid":"GO:0005684"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00058":null,"SJAG_00147":null,"SJAG_00225":null,"SJAG_00249":null,"SJAG_01301":null,"SJAG_01654":null,"SJAG_03983":null,"SJAG_03995":null,"SJAG_05009":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"commitment complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mammalian spliceosomal E complex","type":"narrow"},{"name":"mammalian spliceosomal complex E","type":"narrow"},{"name":"yeast spliceosomal complex CC","type":"narrow"}],"termid":"GO:0000243","terms_by_termid":{"GO:0000243":null}}


id: PBO:0028702
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_during_meiosis","termid":"PBO:0028702"}


id: PBO:0046770
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome component 10","termid":"PBO:0046770"}


id: GO:0051786
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: all-trans-13,14-dihydroretinol + A = all-trans-retinol + AH(2). Note that this reaction has only been observed to occur in the opposite direction.","definition_xrefs":["EC:1.3.99.23","RHEA:19193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"all-trans-retinol 13,14-reductase activity","secondary_identifiers":["Reactome:R-HSA-8956427","MetaCyc:1.3.99.23-RXN","KEGG_REACTION:R07163"],"synonyms":[{"name":"(13,14)-all-trans-retinol saturase activity","type":"exact"},{"name":"RetSat activity","type":"related"},{"name":"all-trans-13,14-dihydroretinol:acceptor 13,14-oxidoreductase activity","type":"exact"},{"name":"all-trans-retinol:all-trans-13,14-dihydroretinol saturase activity","type":"exact"},{"name":"retinol saturase activity","type":"related"}],"termid":"GO:0051786"}


id: GO:0030758
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3',4',5-trihydroxy-3,7-dimethoxyflavone + S-adenosyl-L-methionine(1+) = 3',5-dihydroxy-3,4',7-trimethoxyflavone + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["EC:2.1.1.83","RHEA:21832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"3,7-dimethylquercitin 4'-O-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R03456","MetaCyc:2.1.1.83-RXN"],"synonyms":[{"name":"3,7-dimethylquercetin 4'-O-methyltransferase activity","type":"related"},{"name":"4'-OMT activity","type":"related"},{"name":"S-adenosyl-L-methionine:3',4',5-trihydroxy-3,7-dimethoxyflavone 4'-O-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:5,3',4'-trihydroxy-3,7-dimethoxyflavone 4'-O-methyltransferase activity","type":"related"},{"name":"flavonol 4'-O-methyltransferase activity","type":"related"},{"name":"flavonol 4'-methyltransferase activity","type":"related"}],"termid":"GO:0030758"}


id: MONDO:0013576
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Deficiencies in immunoglobulin (Ig) isotypes (including: isolated IgG subclass deficiency, IgG subclass deficiency with IgA deficiency and kappa chain deficiency) are primary immunodeficiencies that are often asymptomatic but can be characterized by recurrent, often pyogenic, sinopulmonary infections.","definition_xrefs":["Orphanet:183675"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"recurrent infections associated with rare immunoglobulin isotypes deficiency","secondary_identifiers":["MESH:C564131","GARD:17086","OMIM:614102","MEDGEN:481454","NANDO:2200719","UMLS:C3279824"],"synonyms":[{"name":"IGKCD","type":"related"},{"name":"IMMUNOGLOBULIN kappa LIGHT chain deficiency","type":"related"},{"name":"IgG subclass deficiency with IgA subclass deficiency","type":"exact"},{"name":"isolated IgG subclass deficiency","type":"exact"},{"name":"kappa chain deficiency","type":"related"},{"name":"kappa light chain deficiency","type":"exact"},{"name":"kappa-chain deficiency","type":"exact"},{"name":"recurrent infections associated with rare immunoglobulin isotypes deficiency","type":"exact"},{"name":"selective IgG subclass deficiency","type":"related"}],"termid":"MONDO:0013576","xrefs":{"Monarch":{"xref_id":"0013576"}}}


id: PBO:0001084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphomevalonate kinase (predicted)","termid":"PBO:0001084"}


id: PBO:0055298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2725","termid":"PBO:0055298"}


id: PBO:0074933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 100","termid":"PBO:0074933"}


id: GO:0050209
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: polyvinyl alcohol + O2 = oxidized polyvinyl alcohol + H2O2.","definition_xrefs":["EC:1.1.3.30","MetaCyc:POLYVINYL-ALCOHOL-OXIDASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor","termid":"GO:0016899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"polyvinyl-alcohol oxidase activity","secondary_identifiers":["RHEA:21688"],"synonyms":[{"name":"PVA oxidase activity","type":"related"},{"name":"dehydrogenase, polyvinyl alcohol","type":"related"},{"name":"polyvinyl-alcohol:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0050209"}


id: GO:0106421
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: L-glutamate(out) + H+(in) = L-glutamate(in) + H+(out).","definition_xrefs":["PMID:29273736"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamate transmembrane transporter activity","termid":"GO:0005313"},{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"amino acid:monoatomic cation antiporter activity","termid":"GO:0140848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"L-glutamate:proton antiporter activity","termid":"GO:0106421"}


id: PBO:0017422
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-location_of","termid":"PBO:0017422"}


id: PBO:0054569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1971","termid":"PBO:0054569"}


id: MONDO:0020079
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete plasma cell tumor (obsolete MONDO:0020079)","termid":"MONDO:0020079","xrefs":{"Monarch":{"xref_id":"0020079"}}}


id: RO:0002244
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Any relationship between an exposure event or process and any other entity.","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_related_to","termid":"RO:0002410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"related_via_exposure_to","termid":"RO:0002244"}


id: PBO:0061924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily G member 1","termid":"PBO:0061924"}


id: GO:0048609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.","definition_xrefs":["GOC:jid","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive process","termid":"GO:0022414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multicellular organismal reproductive process","synonyms":[{"name":"organismal reproductive process","type":"broad"},{"name":"reproductive process in a multicellular organism","type":"exact"}],"termid":"GO:0048609"}


id: GO:1905841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxidopamine stimulus.","definition_xrefs":["GOC:TermGenie","GOC:rz","GO_REF:0000071","PMID:23721876"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to catecholamine","termid":"GO:0071869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to oxidopamine","termid":"GO:1905841"}


id: FYPO:0004218
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 20 of histone H4 does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished histone methylation during vegetative growth","termid":"FYPO:0002565"},{"relation_name":"is_a","term_name":"abnormal histone H4-K20 methylation during vegetative growth","termid":"FYPO:0004215"},{"relation_name":"is_a","term_name":"abolished protein lysine methylation during vegetative growth","termid":"FYPO:0004488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"abolished histone H4-K20 trimethylation during vegetative growth","synonyms":[{"name":"abolished histone H4 K20 trimethylation during vegetative growth","type":"exact"},{"name":"abolished histone H4-K20 trimethylation during mitotic cell cycle","type":"related"},{"name":"abolished histone H4K20me3 during vegetative growth","type":"exact"},{"name":"abolished histone lysine H4 K20 trimethylation during vegetative growth","type":"exact"},{"name":"histone H4-K20 trimethylation abolished during vegetative growth","type":"exact"},{"name":"histone H4-K20 trimethylation absent during vegetative growth","type":"exact"}],"termid":"FYPO:0004218"}


id: PBO:0063870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PIGB opposite strand 1","termid":"PBO:0063870"}


id: PBO:0067762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 62","termid":"PBO:0067762"}


id: PBO:0034028
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canto_curator_role","termid":"PBO:0034028"}


id: MONDO:0032639
data:
  {"annotated_genes":["SJAG_03007"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85481],"is_not":false,"summary":null,"term":"MONDO:0032639"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0006025"],"is_obsolete":false,"name":"hearing loss, autosomal recessive 112","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1648378","OMIM:618257","DOID:0111637","GARD:18377","UMLS:C4748855"],"synonyms":[{"name":"DFNB112","type":"narrow"},{"name":"deafness, autosomal recessive 112","type":"narrow"}],"termid":"MONDO:0032639","terms_by_termid":{"MONDO:0032639":null},"xrefs":{"Monarch":{"xref_id":"0032639"}}}


id: GO:0090481
data:
  {"annotated_genes":["SJAG_01177","SJAG_00434","SJAG_04162","SJAG_04697","SJAG_04406"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87578,114700],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097624"},{"annotations":[111508,114701],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072334"},{"annotations":[92308],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015786"},{"annotations":[111509],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120112"},{"annotations":[104143],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990569"},{"annotations":[65948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015790"}]},"cv_name":"biological_process","definition":"The process in which a pyrimidine nucleotide-sugar is transported across a membrane. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-sugar transmembrane transport","termid":"GO:0015780"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00434":null,"SJAG_01177":null,"SJAG_04162":null,"SJAG_04406":null,"SJAG_04697":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"pyrimidine nucleotide-sugar transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0015781"],"synonyms":[{"name":"pyrimidine nucleotide-sugar membrane transport","type":"exact"},{"name":"pyrimidine nucleotide-sugar transport","type":"related"}],"termid":"GO:0090481","terms_by_termid":{"GO:0015786":null,"GO:0015790":null,"GO:0072334":null,"GO:0097624":null,"GO:0120112":null,"GO:1990569":null}}


id: GO:0070080
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a titin Z protein domain, which recognizes and binds to the C-terminal calmodulin-like domain of alpha-actinin-2 (Act-EF34), adopts a helical structure, and binds in a groove formed by the two planes between the helix pairs of Act-EF34.","definition_xrefs":["GOC:mah","InterPro:IPR015129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"titin Z domain binding","synonyms":[{"name":"Z repeat domain binding","type":"exact"}],"termid":"GO:0070080"}


id: MONDO:0008735
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial glucocorticoid deficiency","termid":"MONDO:0008733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adrenocortical unresponsiveness to ACTH with postreceptor defect","secondary_identifiers":["MEDGEN:348507","UMLS:C1859971","OMIM:202355","GARD:15133","MESH:C565971"],"synonyms":[{"name":"adrenocortical unresponsiveness to ACTH with postreceptor defect","type":"exact"},{"name":"familial glucocorticoid deficiency due to defect distal to ACTH receptor","type":"related"}],"termid":"MONDO:0008735","xrefs":{"Monarch":{"xref_id":"0008735"}}}


id: GO:0042980
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a Cystic Fibrosis Transmembrane conductance Regulator (CFTR) protein.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cystic fibrosis transmembrane conductance regulator binding (obsolete GO:0042980)","synonyms":[{"name":"CFTR binding","type":"exact"},{"name":"cystic fibrosis transmembrane conductance regulator binding","type":"exact"}],"termid":"GO:0042980"}


id: MONDO:0013003
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Isolated aglossia and hypoglossia are terms covering the spectrum from partial to total absence of the tongue. These congenital malformations have been classified as part of the group of oromandibular-limb hypogenesis syndromes (OLHS).","definition_xrefs":["Orphanet:141152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tongue disorder","termid":"MONDO:0001165"},{"relation_name":"is_a","term_name":"oromandibular-limb hypogenesis syndrome","termid":"MONDO:0017139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"isolated congenital hypoglossia/aglossia","secondary_identifiers":["GARD:16972","MEDGEN:411249","OMIM:612776","UMLS:C2748587"],"synonyms":[{"name":"hypoglossia with situs inversus","type":"related"},{"name":"hypoglossia, isolated","type":"related"}],"termid":"MONDO:0013003","xrefs":{"Monarch":{"xref_id":"0013003"}}}


id: PBO:0057012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 103a-1","termid":"PBO:0057012"}


id: PBO:0062287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily K member 4","termid":"PBO:0062287"}


id: PBO:0072252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S20 pseudogene 27","termid":"PBO:0072252"}


id: GO:0008545
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the phosphorylation of tyrosine and threonine residues in a c-Jun NH2-terminal kinase (JNK), a member of a subgroup of mitogen-activated protein kinases (MAPKs), which signal in response to cytokines and exposure to environmental stress. JUN kinase kinase (JNKK) is a dual-specificity protein kinase kinase and requires activation by a serine/threonine kinase JUN kinase kinase kinase.","definition_xrefs":["GOC:bf","PMID:11057897","PMID:11790549"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MAP kinase kinase activity","termid":"GO:0004708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0140096","GO:0016301","GO:0004672","GO:0003674"],"is_obsolete":false,"name":"JUN kinase kinase activity","secondary_identifiers":["Reactome:R-HSA-168162"],"synonyms":[{"name":"JNKK","type":"exact"}],"termid":"GO:0008545"}


id: PBO:0058771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6895","termid":"PBO:0058771"}


id: RO:HOM0000050
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Paralogy that involves genes from different species.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_paralogy_relationship_with","termid":"RO:HOM0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_between-species_paralogy_relationship_with","synonyms":[{"name":"between-species paralogous to","type":"exact"}],"termid":"RO:HOM0000050"}


id: PBO:0027912
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_during_cellular_response_to_hydroxyurea","termid":"PBO:0027912"}


id: PBO:0031152
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_myo-inositol_import","termid":"PBO:0031152"}


id: GO:0046693
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The retention of sperm by a female following mating.","definition_xrefs":["PMID:10885514"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sperm competition","termid":"GO:0046692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sperm storage","synonyms":[{"name":"retention of sperm","type":"exact"},{"name":"sequestering of sperm","type":"exact"},{"name":"sequestration of sperm","type":"exact"},{"name":"sperm retention","type":"exact"},{"name":"sperm sequestering","type":"exact"},{"name":"sperm sequestration","type":"exact"},{"name":"storage of sperm","type":"exact"}],"termid":"GO:0046693"}


id: PBO:0017764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-CCHC type zinc finger protein (predicted)","termid":"PBO:0017764"}


id: MONDO:1010664
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autoimmune thrombocytopenic purpura that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune thrombocytopenic purpura, non-human animal","termid":"MONDO:1010081"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autoimmune thrombocytopenic purpura, pig","secondary_identifiers":["OMIA:001104-9823"],"termid":"MONDO:1010664","xrefs":{"Monarch":{"xref_id":"1010664"}}}


id: MONDO:0011897
data:
  {"annotated_genes":["SJAG_00637","SJAG_04934"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85404,85405],"is_not":false,"summary":null,"term":"MONDO:0011897"}]},"cv_name":"mondo","definition":"A syndrome is characterized by ataxia, delayed dentition, hypomyelination and cerebral atrophy. So far, eight cases have been described.","definition_xrefs":["Orphanet:137639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"POLR3A-related disorder","termid":"MONDO:0700276"},{"relation_name":"is_a","term_name":"POLR3-related leukodystrophy","termid":"MONDO:0700282"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00637":null,"SJAG_04934":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"leukoencephalopathy-ataxia-hypodontia-hypomyelination syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C2676243","GARD:16948","MEDGEN:390993","NANDO:1200585","SCTID:721846006","DOID:0060794","NANDO:2201297","OMIM:607694"],"synonyms":[{"name":"4H syndrome","type":"related"},{"name":"HLD7","type":"exact"},{"name":"ataxia, delayed dentition, and hypomyelination","type":"related"},{"name":"ataxia-delayed dentition-hypomyelination syndrome","type":"exact"},{"name":"ataxia-delayed dentition-hypomyelination syndrome; odontoleukodystrophy","type":"exact"},{"name":"dentoleukoencephalopathy","type":"related"},{"name":"hypomyelinating leukodystrophy 7 with or without oligodontia and-or hypogonadotropic hypogonadism","type":"related"},{"name":"hypomyelinating leukodystrophy-ataxia-hypodontia-hypomyelination syndrome","type":"related"},{"name":"hypomyelination-cerebellar atrophy-hypoplasia of the corpus callosum syndrome","type":"related"},{"name":"leukodystrophy, hypomyelinating, 7, with or without oligodontia and/or hypogonadotropic hypogonadism","type":"related"},{"name":"leukodystrophy, hypomyelinating, with hypodontia and hypogonadotropic hypogonadism","type":"related"},{"name":"leukoencephalopathy, hypomyelinating, with ataxia and delayed dentition","type":"related"},{"name":"leukoencephalopathy-ataxia-hypodontia-hypomyelination syndrome","type":"exact"}],"termid":"MONDO:0011897","terms_by_termid":{"MONDO:0011897":null},"xrefs":{"Monarch":{"xref_id":"0011897"}}}


id: FYECO:0000044
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which myristic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ fatty acid","termid":"FYECO:0000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ myristic acid","termid":"FYECO:0000044"}


id: PBO:0083509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF CRN1","termid":"PBO:0083509"}


id: PR:O59707
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC36.10 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59707"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPS-like protein C36.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36.10","synonyms":[{"name":"Spom972h-SPBC36.10","type":"exact"}],"termid":"PR:O59707"}


id: PBO:0053178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEMD1 divergent transcript","termid":"PBO:0053178"}


id: GO:0019140
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + myo-inositol = ADP + 1D-myo-inositol 3-phosphate.","definition_xrefs":["EC:2.7.1.64"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"inositol 3-kinase activity","secondary_identifiers":["RHEA:21804","MetaCyc:MYO-INOSITOL-1-KINASE-RXN"],"synonyms":[{"name":"ATP:myo-inositol 1-phosphotransferase activity","type":"related"},{"name":"inositol 1-kinase activity","type":"related"},{"name":"inositol-1-kinase (phosphorylating)","type":"related"},{"name":"myo-inositol 1-kinase activity","type":"related"},{"name":"myo-inositol 3-kinase activity","type":"exact"},{"name":"myoinositol kinase activity","type":"broad"}],"termid":"GO:0019140"}


id: PBO:0049117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 182","termid":"PBO:0049117"}


id: MONDO:0002362
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-invasive papillary serous epithelial neoplasm usually arising from the ovary.","definition_xrefs":["NCIT:C4181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papilloma","termid":"MONDO:0002363"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serous surface papilloma","secondary_identifiers":["UMLS:C0334360","MEDGEN:90770","ICDO:8461/0","DOID:2614"],"synonyms":[{"name":"serous surface papilloma","type":"exact"},{"name":"serous surface papilloma (morphologic abnormality)","type":"exact"},{"name":"serous surface papilloma NOS (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0002362","xrefs":{"Monarch":{"xref_id":"0002362"}}}


id: PBO:0066204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 18","termid":"PBO:0066204"}


id: FYPO:0004070
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell is too low to detect during a cellular response to copper ion starvation. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA absent from cell during vegetative growth","termid":"FYPO:0003161"},{"relation_name":"is_a","term_name":"decreased RNA level during cellular response to copper ion starvation during vegetative growth","termid":"FYPO:0003280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"RNA absent from cell during cellular response to copper ion starvation","synonyms":[{"name":"RNA absent from cell during cellular response to copper ion starvation during mitotic cell cycle","type":"related"},{"name":"RNA absent from cell during cellular response to copper ion starvation during vegetative growth","type":"exact"},{"name":"RNA absent from cell during cellular response to copper starvation","type":"exact"},{"name":"transcripts absent from cell during cellular response to copper ion starvation","type":"exact"},{"name":"undetectable RNA level during cellular response to copper ion starvation","type":"exact"}],"termid":"FYPO:0004070"}


id: PBO:0002220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase Sdh1 (predicted)","termid":"PBO:0002220"}


id: PBO:0014609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MBF complex corepressor nrm1","termid":"PBO:0014609"}


id: MONDO:0011461
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any febrile seizures, familial in which the cause of the disease is a mutation in the SCN1A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"febrile seizures, familial","termid":"MONDO:0000032"},{"relation_name":"is_a","term_name":"generalized epilepsy with febrile seizures plus","termid":"MONDO:0018214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"generalized epilepsy with febrile seizures plus, type 2","secondary_identifiers":["MEDGEN:388117","MESH:C565810","UMLS:C1858673","GARD:18661","DOID:0111294","OMIM:604403"],"synonyms":[{"name":"GEFS+, type 2","type":"exact"},{"name":"GEFSP2","type":"related"},{"name":"SCN1A febrile seizures, familial","type":"exact"},{"name":"febrile seizures, familial caused by mutation in SCN1A","type":"exact"},{"name":"febrile seizures, familial, 3A","type":"related"},{"name":"generalized epilepsy with febrile seizures plus, type 2","type":"exact"}],"termid":"MONDO:0011461","xrefs":{"Monarch":{"xref_id":"0011461"}}}


id: PBO:0067961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 263","termid":"PBO:0067961"}


id: GO:0043128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the activity of 1-phosphatidylinositol 4-kinase.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of 1-phosphatidylinositol 4-kinase activity (obsolete GO:0043128)","synonyms":[{"name":"activation of 1-phosphatidylinositol 4-kinase activity","type":"narrow"},{"name":"positive regulation of PI4K activity","type":"exact"},{"name":"stimulation of 1-phosphatidylinositol 4-kinase activity","type":"narrow"},{"name":"up regulation of 1-phosphatidylinositol 4-kinase activity","type":"exact"},{"name":"up-regulation of 1-phosphatidylinositol 4-kinase activity","type":"exact"},{"name":"upregulation of 1-phosphatidylinositol 4-kinase activity","type":"exact"}],"termid":"GO:0043128"}


id: MONDO:0031030
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 107, susceptibility to invasive staphylococcus aureus infection","secondary_identifiers":["OMIM:619986","UMLS:C5774192","MEDGEN:1823965"],"synonyms":[{"name":"IMD107","type":"exact"},{"name":"immunodeficiency 107, susceptibility to invasive staphylococcus aureus infection","type":"exact"}],"termid":"MONDO:0031030","xrefs":{"Monarch":{"xref_id":"0031030"}}}


id: FYPO:0003084
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which replication fork arrest at the mating-type locus does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork arrest at mating-type locus","termid":"FYPO:0003083"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000293","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abolished replication fork arrest at mating-type locus","synonyms":[{"name":"abolished replication fork arrest at mating-type locus during mitotic cell cycle","type":"related"},{"name":"replication fork arrest at mating-type locus abolished","type":"exact"},{"name":"replication fork arrest at mating-type locus abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0003084"}


id: PBO:0066108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RASGRF2 antisense RNA 1","termid":"PBO:0066108"}


id: GO:1990765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry of the large intestine, exclusive of the rectum. The colon is that part of the large intestine that connects the small intestine to the rectum.","definition_xrefs":["PMID:24170253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smooth muscle contraction","termid":"GO:0006939"},{"relation_name":"part_of","term_name":"intestine smooth muscle contraction","termid":"GO:0014827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"colon smooth muscle contraction","termid":"GO:1990765"}


id: MONDO:0017539
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete postaxial polydactyly of toes, unilateral (obsolete MONDO:0017539)","secondary_identifiers":["Orphanet:295179"],"termid":"MONDO:0017539","xrefs":{"Monarch":{"xref_id":"0017539"}}}


id: GO:0003864
data:
  {"annotated_genes":["SJAG_05200"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97936],"is_not":false,"summary":null,"term":"GO:0003864"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,10-methylenetetrahydrofolate + 3-methyl-2-oxobutanoate = tetrahydrofolate + 2-dehydropantoate.","definition_xrefs":["EC:2.1.2.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxymethyl-, formyl- and related transferase activity","termid":"GO:0016742"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05200":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"3-methyl-2-oxobutanoate hydroxymethyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:11824","MetaCyc:3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN"],"synonyms":[{"name":"5,10-methylene tetrahydrofolate:alpha-ketoisovalerate hydroxymethyltransferase activity","type":"related"},{"name":"5,10-methylenetetrahydrofolate:3-methyl-2-oxobutanoate hydroxymethyltransferase activity","type":"related"},{"name":"alpha-ketoisovalerate hydroxymethyltransferase activity","type":"related"},{"name":"dehydropantoate hydroxymethyltransferase activity","type":"related"},{"name":"ketopantoate hydroxymethyltransferase activity","type":"related"},{"name":"oxopantoate hydroxymethyltransferase activity","type":"related"}],"termid":"GO:0003864","terms_by_termid":{"GO:0003864":null}}


id: MONDO:0017854
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete T-b+ severe combined immunodeficiency (obsolete MONDO:0017854)","termid":"MONDO:0017854","xrefs":{"Monarch":{"xref_id":"0017854"}}}


id: MONDO:0007946
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Marcus-Gunn syndrome is characterized by ptosis associated with maxillopalpebral synkinesis.","definition_xrefs":["Orphanet:91412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"cranial nerve neuropathy","termid":"MONDO:0003569"},{"relation_name":"is_a","term_name":"disorder of visual system","termid":"MONDO:0024458"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jaw-winking syndrome","secondary_identifiers":["OMIM:154600","icd11.foundation:590216180","MESH:C535908","MedDRA:10064583","SCTID:5127009","GARD:6972","MEDGEN:120582","UMLS:C0266521","DOID:560","ICD9:374.43","ICD9:742.8","NORD:1401"],"synonyms":[{"name":"Marcus Gunn Phenomenon","type":"exact"},{"name":"Marcus Gunn phenomenon","type":"exact"},{"name":"Marcus Gunn syndrome","type":"exact"},{"name":"Marcus-Gunn phenomenon","type":"exact"},{"name":"Marcus-Gunn syndrome","type":"exact"},{"name":"Maxillopalpebral synkinesis","type":"exact"},{"name":"abnormal innervation syndrome of eyelid","type":"related"},{"name":"familial Marcus Gunn phenomenon (subtype)","type":"related"},{"name":"jaw-blinking","type":"exact"},{"name":"jaw-winking","type":"exact"},{"name":"jaw-winking syndrome","type":"exact"},{"name":"mandibulo-palpebral synkinesis-ptosis syndrome","type":"exact"},{"name":"pterygoid-levator synkinesis","type":"exact"}],"termid":"MONDO:0007946","xrefs":{"Monarch":{"xref_id":"0007946"}}}


id: FYPO:0004450
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type) during a cellular response to calcium ions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal protein phosphorylation during cellular response to calcium ion","synonyms":[{"name":"normal protein phosphorylation during cellular response to calcium","type":"exact"},{"name":"normal protein phosphorylation during cellular response to calcium ion during mitotic cell cycle","type":"related"},{"name":"normal protein phosphorylation during cellular response to calcium ion during vegetative growth","type":"exact"}],"termid":"FYPO:0004450"}


id: FYPO:0006501
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which actin fusion focus assembly begins earlier than normal. An actin fusion focus normally forms during mating at the site where the two cells will fuse.","definition_xrefs":["PMID:29453312","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin fusion focus assembly","termid":"FYPO:0006108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0004803","FYPO:0000301"],"is_obsolete":false,"name":"premature actin fusion focus assembly","synonyms":[{"name":"advanced actin fusion focus assembly","type":"exact"},{"name":"premature actin fusion focus formation","type":"exact"}],"termid":"FYPO:0006501"}


id: GO:0034761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of iron ions from one side of a membrane to the other by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of iron ion transport","termid":"GO:0034758"},{"relation_name":"is_a","term_name":"regulation of iron ion transmembrane transport","termid":"GO:0034759"},{"relation_name":"is_a","term_name":"positive regulation of cation transmembrane transport","termid":"GO:1904064"},{"relation_name":"positively_regulates","term_name":"iron ion transmembrane transport","termid":"GO:0034755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of iron ion transmembrane transport","synonyms":[{"name":"activation of transmembrane iron ion transport","type":"narrow"},{"name":"positive regulation of iron ion membrane transport","type":"exact"},{"name":"positive regulation of transmembrane iron ion transport","type":"exact"},{"name":"positive regulation of transmembrane iron transport","type":"exact"},{"name":"stimulation of transmembrane iron ion transport","type":"narrow"},{"name":"up regulation of transmembrane iron ion transport","type":"exact"},{"name":"up-regulation of transmembrane iron ion transport","type":"exact"},{"name":"upregulation of transmembrane iron ion transport","type":"exact"}],"termid":"GO:0034761"}


id: GO:0035970
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of phosphoric residues from peptidyl-O-phospho-L-threonine to form peptidyl-threonine.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein dephosphorylation","termid":"GO:0006470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-threonine dephosphorylation","termid":"GO:0035970"}


id: PBO:0085892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; involved in secretion of proteins that lack classical secretory signal sequences; SWAT-GFP and mCherry fusion proteins localize to the cytosol","termid":"PBO:0085892"}


id: PBO:0005411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-C (predicted)","termid":"PBO:0005411"}


id: GO:0099141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a protozoan.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to protozoan","termid":"GO:0001562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to protozoan","termid":"GO:0099141"}


id: FYPO:0006582
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity","termid":"FYPO:0004644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000654","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"decreased bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity","synonyms":[{"name":"reduced bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity","type":"exact"}],"termid":"FYPO:0006582"}


id: PBO:0058598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6730","termid":"PBO:0058598"}


id: PBO:0079443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TUB like protein 1","termid":"PBO:0079443"}


id: PBO:0034403
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-requires_target_sequence_feature_(obsolete_requires_target_sequence_feature)","termid":"PBO:0034403"}


id: MONDO:0017616
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked intellectual disability, Schutz type","secondary_identifiers":["Orphanet:3062"],"termid":"MONDO:0017616","xrefs":{"Monarch":{"xref_id":"0017616"}}}


id: PBO:0043056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroitin polymerizing factor 2","termid":"PBO:0043056"}


id: MONDO:1012304
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hypocatalasia, non-human animal","termid":"MONDO:1011714"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypocatalasia, domestic guinea pig","secondary_identifiers":["OMIA:001138-10141"],"termid":"MONDO:1012304","xrefs":{"Monarch":{"xref_id":"1012304"}}}


id: PR:O74901
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC613.01 gene.","definition_xrefs":["UniProtKB:O74901","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein CC613.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC613.01","synonyms":[{"name":"Spom972h-SPCC613.01","type":"exact"}],"termid":"PR:O74901"}


id: PBO:0039167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A-kinase anchor inhibitor 1","termid":"PBO:0039167"}


id: PBO:0003037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid transporter Aat1 (predicted)","termid":"PBO:0003037"}


id: MONDO:0013779
data:
  {"annotated_genes":["SJAG_03119"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85902],"is_not":false,"summary":null,"term":"MONDO:0013779"}]},"cv_name":"mondo","definition":"Any Wiskott-Aldrich syndrome in which the cause of the disease is a mutation in the WIPF1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03119":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"Wiskott-Aldrich syndrome 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3281001","GARD:15809","NCIT:C176820","OMIM:277970","OMIM:614493","MEDGEN:482631"],"synonyms":[{"name":"WAS2","type":"related"},{"name":"WIPF1 Wiskott-Aldrich syndrome","type":"exact"},{"name":"Wipf1 deficiency","type":"related"},{"name":"Wiskott-Aldrich syndrome 2","type":"exact"},{"name":"Wiskott-Aldrich syndrome caused by mutation in WIPF1","type":"exact"},{"name":"Wiskott-Aldrich syndrome type 2","type":"exact"}],"termid":"MONDO:0013779","terms_by_termid":{"MONDO:0013779":null},"xrefs":{"Monarch":{"xref_id":"0013779"}}}


id: GO:0019064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.","definition_xrefs":["GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane fusion involved in viral entry into host cell","termid":"GO:0039663"},{"relation_name":"is_a","term_name":"membrane fusion","termid":"GO:0061025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"fusion of virus membrane with host plasma membrane","secondary_identifiers":["GO:0075706","VZ:987"],"synonyms":[{"name":"viral entry into host cell via membrane fusion with the plasma membrane","type":"related"},{"name":"viral envelope fusion","type":"broad"},{"name":"viral envelope fusion with host cell membrane","type":"exact"},{"name":"viral envelope fusion with host membrane","type":"exact"},{"name":"viral envelope fusion with host plasma membrane","type":"exact"},{"name":"viral penetration via membrane fusion","type":"broad"},{"name":"viral-cell fusion molecule activity","type":"related"}],"termid":"GO:0019064"}


id: GO:0098538
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the transport vesicle membrane that faces the lumen.","definition_xrefs":["GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lumenal side of membrane","termid":"GO:0098576"},{"relation_name":"part_of","term_name":"transport vesicle membrane","termid":"GO:0030658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"lumenal side of transport vesicle membrane","synonyms":[{"name":"internal side of transport vesicle membrane","type":"exact"}],"termid":"GO:0098538"}


id: GO:0046303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of 2-nitropropane, a clear, colorless liquid with a mild, fruity odor.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-nitropropane biosynthetic process (obsolete GO:0046303)","synonyms":[{"name":"2-nitropropane anabolism","type":"exact"},{"name":"2-nitropropane biosynthesis","type":"exact"},{"name":"2-nitropropane biosynthetic process","type":"exact"},{"name":"2-nitropropane formation","type":"exact"},{"name":"2-nitropropane synthesis","type":"exact"}],"termid":"GO:0046303"}


id: PBO:0081918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 887, pseudogene","termid":"PBO:0081918"}


id: PBO:0044553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"death associated protein like 1","termid":"PBO:0044553"}


id: GO:0050927
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of a motile cell or organism towards a higher concentration in a concentration gradient of a specific chemical.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of chemotaxis","termid":"GO:0050921"},{"relation_name":"is_a","term_name":"regulation of positive chemotaxis","termid":"GO:0050926"},{"relation_name":"positively_regulates","term_name":"positive chemotaxis","termid":"GO:0050918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of positive chemotaxis","synonyms":[{"name":"activation of positive chemotaxis","type":"narrow"},{"name":"stimulation of positive chemotaxis","type":"narrow"},{"name":"up regulation of positive chemotaxis","type":"exact"},{"name":"up-regulation of positive chemotaxis","type":"exact"},{"name":"upregulation of positive chemotaxis","type":"exact"}],"termid":"GO:0050927"}


id: PBO:0043541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coilin","termid":"PBO:0043541"}


id: PBO:0079220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tau tubulin kinase 2","termid":"PBO:0079220"}


id: PBO:0013073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing associated factor Saf4","termid":"PBO:0013073"}


id: PBO:0068221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 528","termid":"PBO:0068221"}


id: GO:0030854
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of granulocyte differentiation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte differentiation","termid":"GO:0002763"},{"relation_name":"is_a","term_name":"regulation of granulocyte differentiation","termid":"GO:0030852"},{"relation_name":"positively_regulates","term_name":"granulocyte differentiation","termid":"GO:0030851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of granulocyte differentiation","synonyms":[{"name":"activation of granulocyte differentiation","type":"narrow"},{"name":"stimulation of granulocyte differentiation","type":"narrow"},{"name":"up regulation of granulocyte differentiation","type":"exact"},{"name":"up-regulation of granulocyte differentiation","type":"exact"},{"name":"upregulation of granulocyte differentiation","type":"exact"}],"termid":"GO:0030854"}


id: PBO:0049003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase 1 like","termid":"PBO:0049003"}


id: GO:0008791
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: succinyl-CoA + L-arginine = CoA + N2-succinyl-L-arginine.","definition_xrefs":["EC:2.3.1.109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-succinyltransferase activity","termid":"GO:0016749"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"arginine N-succinyltransferase activity","secondary_identifiers":["MetaCyc:ARGININE-N-SUCCINYLTRANSFERASE-RXN","RHEA:15185"],"synonyms":[{"name":"AOST activity","type":"related"},{"name":"AST activity","type":"related"},{"name":"AstA","type":"related"},{"name":"arginine and ornithine N(2)-succinyltransferase activity","type":"related"},{"name":"arginine and ornithine N2-succinyltransferase activity","type":"related"},{"name":"arginine succinyltransferase activity","type":"related"},{"name":"succinyl-CoA:L-arginine 2-N-succinyltransferase activity","type":"related"},{"name":"succinyl-CoA:L-arginine N2-succinyltransferase activity","type":"related"}],"termid":"GO:0008791"}


id: PBO:0054328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1721","termid":"PBO:0054328"}


id: MONDO:0100306
data:
  {"annotated_genes":["SJAG_04823"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85196],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013571"}]},"cv_name":"mondo","definition":"Any peroxisomal single enzyme/protein defect that has its basis in the disruption of peroxisome oxidation.","definition_xrefs":["MONDO:patterns/disrupts_process"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxisomal single enzyme/protein defect","termid":"MONDO:0100257"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04823":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0019053"}],"interesting_parent_ids":["MONDO:0019053","MONDO:0005066"],"is_obsolete":false,"name":"disorder of defective peroxisome oxidative status","references_by_uniquename":{"PB_REF:0000006":null},"synonyms":[{"name":"disorder of defective peroxisome oxidative status","type":"exact"}],"termid":"MONDO:0100306","terms_by_termid":{"MONDO:0013571":null},"xrefs":{"Monarch":{"xref_id":"0100306"}}}


id: GO:0033727
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an aldehyde + H2O + acceptor = a carboxylate + reduced acceptor.","definition_xrefs":["EC:1.2.99.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors","termid":"GO:0016903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"aldehyde dehydrogenase (FAD-independent) activity","secondary_identifiers":["MetaCyc:1.2.99.7-RXN"],"synonyms":[{"name":"AORDd","type":"related"},{"name":"Mop","type":"related"},{"name":"aldehyde oxidoreductase activity","type":"related"},{"name":"aldehyde:acceptor oxidoreductase (FAD-independent) activity","type":"related"}],"termid":"GO:0033727"}


id: GO:0060560
data:
  {"annotated_genes":["SJAG_04509","SJAG_00514","SJAG_03581","SJAG_01017","SJAG_02169","SJAG_00244","SJAG_02392"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89070,93776,95044],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0051519"},{"annotations":[87103,93217],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042815"},{"annotations":[89935],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0051517"},{"annotations":[114182],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0051516"}]},"cv_name":"biological_process","definition":"The increase in size or mass of an anatomical structure that contributes to the structure attaining its shape.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental growth","termid":"GO:0048589"},{"relation_name":"part_of","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00514":null,"SJAG_01017":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_03581":null,"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"developmental growth involved in morphogenesis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"differential growth","type":"exact"}],"termid":"GO:0060560","terms_by_termid":{"GO:0042815":null,"GO:0051516":null,"GO:0051517":null,"GO:0051519":null}}


id: FYPO:0005078
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a combination of canavanine and rapamycin. Cells stop growing (and may die) at concentrations of canavanine and rapamycin that allows wild type cells to grow.","definition_xrefs":["PMID:17179073","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to canavanine and rapamycin","synonyms":[{"name":"hypersensitive to canavanine and rapamycin","type":"exact"},{"name":"sensitive to canavanine and rapamycin during mitotic cell cycle","type":"related"},{"name":"sensitive to canavanine and rapamycin during vegetative growth","type":"exact"},{"name":"sensitive to canavanine and rapamycin in combination","type":"exact"}],"termid":"FYPO:0005078"}


id: PR:P40921
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC29A4.02c gene.","definition_xrefs":["UniProtKB:P40921","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongation factor 1-gamma (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29A4.02c","synonyms":[{"name":"EF-1-gamma (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPAC29A4.02c","type":"exact"},{"name":"eEF-1B gamma (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P40921"}


id: MONDO:0023833
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multifocal choroiditis (MFC) is an inflammatory disorder characterized by swelling of the eye (called uveitis) and multiple lesions in the choroid, a layer of blood vessels between the white of the eye and the retina. Symptoms include blurry vision, floaters, sensitivity to light, blind spots and mild eye discomfort. Though the cause is unknown, multifocal choroiditis is seen most frequently in women ages 20 to 60, and usually affects both eyes. MFC is generally treated with steroid medication that can be taken orally or injected into the eye. Multifocal choroiditis is a chronic condition, thus symptoms may return or worsen even after successful treatment.","definition_xrefs":["GARD:0009824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"choroiditis","termid":"MONDO:0001280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"multifocal choroiditis","secondary_identifiers":["UMLS:C1533060","icd11.foundation:1197219411","GARD:9824","MESH:C537374","MEDGEN:288551","MESH:D000080364","SCTID:414783007"],"termid":"MONDO:0023833","xrefs":{"Monarch":{"xref_id":"0023833"}}}


id: PBO:0070185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 103 pseudogene","termid":"PBO:0070185"}


id: MONDO:0800375
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"DEND syndrome","termid":"MONDO:0019207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019254"},{"rel_name":"is_a","termid":"MONDO:0005015"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004335","MONDO:0005015","MONDO:0037792","MONDO:0019254"],"is_obsolete":false,"name":"developmental delay, epilepsy, and neonatal diabetes 1","secondary_identifiers":["MEDGEN:1709191","UMLS:C5394597"],"synonyms":[{"name":"DEND1","type":"exact"}],"termid":"MONDO:0800375","xrefs":{"Monarch":{"xref_id":"0800375"}}}


id: PBO:0075763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRRM2 antisense RNA 1","termid":"PBO:0075763"}


id: PBO:0073966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 22 member 15","termid":"PBO:0073966"}


id: GO:1900542
data:
  {"annotated_genes":["SJAG_05314","SJAG_02785","SJAG_04422","SJAG_00685"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72412,75326],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[88899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905857"},{"annotations":[88421],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006110"},{"annotations":[117128],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905706"},{"annotations":[75325],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043456"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of purine nucleotide metabolic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleotide metabolic process","termid":"GO:0006140"},{"relation_name":"regulates","term_name":"purine nucleotide metabolic process","termid":"GO:0006163"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00685":null,"SJAG_02785":null,"SJAG_04422":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"regulation of purine nucleotide metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of purine metabolic process","type":"narrow"},{"name":"regulation of purine metabolism","type":"narrow"},{"name":"regulation of purine nucleotide metabolism","type":"exact"}],"termid":"GO:1900542","terms_by_termid":{"GO:0006110":null,"GO:0043456":null,"GO:0045820":null,"GO:1905706":null,"GO:1905857":null}}


id: GO:0030999
data:
  {"annotated_genes":["SJAG_00727","SJAG_03698","SJAG_03048","SJAG_04457","SJAG_02104"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88801,116193],"is_not":false,"summary":null,"term":"GO:0030999"},{"annotations":[109334,93080],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090006"},{"annotations":[101575],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0062123"}]},"cv_name":"biological_process","definition":"The cell cycle process in which linear elements are assembled in association with fission yeast chromosomes during meiotic prophase. Linear element assembly begins with LinE complex formation and ends when LinE complexes are associated with chromatin in structures visible as nuclear foci. A linear element is a proteinaceous scaffold related to the synaptonemal complex.","definition_xrefs":["GOC:jb","GOC:mah","PMID:30640914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"homologous chromosome pairing at meiosis","termid":"GO:0007129"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00727":null,"SJAG_02104":null,"SJAG_03048":null,"SJAG_03698":null,"SJAG_04457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0140013","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"linear element assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"linear element formation","type":"related"}],"termid":"GO:0030999","terms_by_termid":{"GO:0030999":null,"GO:0062123":null,"GO:0090006":null}}


id: FYPO:0009107
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in mitotic interphase in which the microtubule-driven movement of daughter nuclei away from the cell tips after mitotic spindle dissambly occurs at a faster speed than normal during telophase.","definition_xrefs":["PMID:37099380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule-based movement during vegetative growth","termid":"FYPO:0005461"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased nuclear movement velocity during mitotic telophase","synonyms":[{"name":"increased nuclear displacement speed during telophase","type":"exact"},{"name":"increased nuclear displacement velocity during telophase","type":"exact"},{"name":"increased nuclear movement speed during telophase","type":"exact"}],"termid":"FYPO:0009107"}


id: PR:O74386
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A methyltransferase-like protein 6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03031","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized methyltransferase C3H7.11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3H7.11","secondary_identifiers":["UniProtKB:O74386"],"synonyms":[{"name":"Spom972h-METTL6","type":"exact"}],"termid":"PR:O74386"}


id: GO:1990748
data:
  {"annotated_genes":["SJAG_02973","SJAG_02276","SJAG_03108","SJAG_00219","SJAG_02515","SJAG_03497","SJAG_01199","SJAG_02960","SJAG_03316","SJAG_04632","SJAG_03623","SJAG_02599","SJAG_00489","SJAG_04404","SJAG_01734","SJAG_03303","SJAG_04674","SJAG_04399","SJAG_00903","SJAG_00270","SJAG_01351","SJAG_04242","SJAG_05181","SJAG_02247","SJAG_01457","SJAG_00365","SJAG_06611","SJAG_03288","SJAG_01651","SJAG_02907","SJAG_02010","SJAG_01973","SJAG_05256","SJAG_01162","SJAG_03653","SJAG_03797","SJAG_03476","SJAG_01596","SJAG_02988","SJAG_01344","SJAG_02630","SJAG_00141","SJAG_04726","SJAG_03166","SJAG_04823","SJAG_01628","SJAG_01404","SJAG_00614","SJAG_04063","SJAG_01995","SJAG_04953","SJAG_04403","SJAG_00668","SJAG_04125","SJAG_01612","SJAG_04788","SJAG_01216","SJAG_04516","SJAG_02106","SJAG_03494","SJAG_04608","SJAG_00988","SJAG_00179"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87184,87189,87286,89320,91645,92323,92324,93876,93881,94147,94215,96297,97568,98210,98396,99035,99239,99510,100988,101972,102044,102797,105762,107868,111424,112145,112595,112633,113733,113834,115253,117301,117724,117866],"is_not":false,"summary":null,"term":"GO:1990748"},{"annotations":[111864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110095"},{"annotations":[96246,96563,96208,107584,92503,117326],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098849"},{"annotations":[112871,100004],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140114"},{"annotations":[94389,99187,104203,116498,107983,117413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061692"},{"annotations":[104206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140041"},{"annotations":[86622,101402],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070458"},{"annotations":[68011,57334,63163,105953,68014,104384,64862,57335,64861,67549,68012,68013,94390,104467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098869"},{"annotations":[94730,102655],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046294"},{"annotations":[99344,88611,92334,68171,98468,109284,64716,109240,57866,88191],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019430"}]},"cv_name":"biological_process","definition":"Any process carried out at the cellular level that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"},{"relation_name":"is_a","term_name":"detoxification","termid":"GO:0098754"},{"relation_name":"part_of","term_name":"cellular response to toxic substance","termid":"GO:0097237"}],"gene_count":63,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_00179":null,"SJAG_00219":null,"SJAG_00270":null,"SJAG_00365":null,"SJAG_00489":null,"SJAG_00614":null,"SJAG_00668":null,"SJAG_00903":null,"SJAG_00988":null,"SJAG_01162":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_01344":null,"SJAG_01351":null,"SJAG_01404":null,"SJAG_01457":null,"SJAG_01596":null,"SJAG_01612":null,"SJAG_01628":null,"SJAG_01651":null,"SJAG_01734":null,"SJAG_01973":null,"SJAG_01995":null,"SJAG_02010":null,"SJAG_02106":null,"SJAG_02247":null,"SJAG_02276":null,"SJAG_02515":null,"SJAG_02599":null,"SJAG_02630":null,"SJAG_02907":null,"SJAG_02960":null,"SJAG_02973":null,"SJAG_02988":null,"SJAG_03108":null,"SJAG_03166":null,"SJAG_03288":null,"SJAG_03303":null,"SJAG_03316":null,"SJAG_03476":null,"SJAG_03494":null,"SJAG_03497":null,"SJAG_03623":null,"SJAG_03653":null,"SJAG_03797":null,"SJAG_04063":null,"SJAG_04125":null,"SJAG_04242":null,"SJAG_04399":null,"SJAG_04403":null,"SJAG_04404":null,"SJAG_04516":null,"SJAG_04608":null,"SJAG_04632":null,"SJAG_04674":null,"SJAG_04726":null,"SJAG_04788":null,"SJAG_04823":null,"SJAG_04953":null,"SJAG_05181":null,"SJAG_05256":null,"SJAG_06611":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0098754","GO:0008150"],"is_obsolete":false,"name":"cellular detoxification","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:1990748","terms_by_termid":{"GO:0019430":null,"GO:0046294":null,"GO:0061692":null,"GO:0070458":null,"GO:0098849":null,"GO:0098869":null,"GO:0110095":null,"GO:0140041":null,"GO:0140114":null,"GO:1990748":null}}


id: GO:0008266
data:
  {"annotated_genes":["SJAG_01327","SJAG_00145","SJAG_03460","SJAG_03214","SJAG_03283","SJAG_03876","SJAG_04427","SJAG_03954","SJAG_01222","SJAG_04880","SJAG_02469","SJAG_01650","SJAG_04271","SJAG_05240"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72290,73948,88696,94355,94823,95025,96310,97714,105509,106882,109088,112024,114072,115545],"is_not":false,"summary":null,"term":"GO:0008266"}]},"cv_name":"molecular_function","definition":"Binding to a sequence of uracil residues in an RNA molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"poly-pyrimidine tract binding","termid":"GO:0008187"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_01222":null,"SJAG_01327":null,"SJAG_01650":null,"SJAG_02469":null,"SJAG_03214":null,"SJAG_03283":null,"SJAG_03460":null,"SJAG_03876":null,"SJAG_03954":null,"SJAG_04271":null,"SJAG_04427":null,"SJAG_04880":null,"SJAG_05240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003723"],"is_obsolete":false,"name":"poly(U) RNA binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"poly(U) binding","type":"exact"}],"termid":"GO:0008266","terms_by_termid":{"GO:0008266":null}}


id: PATO:0001213
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001213 mass_unit (obsolete PATO:0001213)","termid":"PATO:0001213"}


id: MOD:00441
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with a geranylgeranyl group.","definition_xrefs":["DeltaMass:0","PubMed:15609361","Unimod:48"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenylated residue","termid":"MOD:00703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"geranylgeranylated residue","synonyms":[{"name":"Geranyl-geranyl","type":"related"},{"name":"GeranylGeranyl","type":"related"},{"name":"Geranylgeranylation","type":"exact"},{"name":"GergerRes","type":"exact"}],"termid":"MOD:00441"}


id: PBO:0004619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"para-aminobenzoate synthase (predicted)","termid":"PBO:0004619"}


id: PBO:0059832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal response element binding transcription factor 2","termid":"PBO:0059832"}


id: MONDO:0700250
data:
  {"annotated_genes":["SJAG_03046"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86434],"is_not":false,"summary":null,"term":"MONDO:0700250"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex IV deficiency, nuclear-type","termid":"MONDO:0033885"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03046":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial complex IV deficiency, nuclear type 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15158","MEDGEN:1750917","OMIM:220110","UMLS:C5435656","DOID:0070491"],"termid":"MONDO:0700250","terms_by_termid":{"MONDO:0700250":null},"xrefs":{"Monarch":{"xref_id":"0700250"}}}


id: PBO:0083749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential component of the TIM23 complex; with Tim23p, contributes to the architecture and function of the import channel; may link the import motor to the core Translocase of the Inner Mitochondrial membrane (TIM23 complex)","termid":"PBO:0083749"}


id: GO:0042733
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. A digit is one of the terminal divisions of an appendage, such as a finger or toe.","definition_xrefs":["UBERON:0002544","GOC:jl","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"embryonic limb morphogenesis","termid":"GO:0030326"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic digit morphogenesis","termid":"GO:0042733"}


id: GO:0050292
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AH2 + O2 + pregna-4,9(11)-diene-3,20-dione = 9,11alpha-epoxypregn-4-ene-3,20-dione + A + H2O.","definition_xrefs":["RHEA:19557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid hydroxylase activity","termid":"GO:0008395"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"steroid 9-alpha-monooxygenase activity","secondary_identifiers":["MetaCyc:STEROID-9-ALPHA-MONOOXYGENASE-RXN","EC:1.14.99.24","KEGG_REACTION:R04392"],"synonyms":[{"name":"steroid 9-alpha-hydroxylase activity","type":"related"},{"name":"steroid 9a-monooxygenase activity","type":"exact"},{"name":"steroid 9alpha-hydroxylase activity","type":"related"},{"name":"steroid 9alpha-monooxygenase activity","type":"related"},{"name":"steroid,hydrogen-donor:oxygen oxidoreductase (9-epoxidizing)","type":"related"}],"termid":"GO:0050292"}


id: GO:0044483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the inhibition of the process of hemostasis - the stopping of bleeding or the arrest of the circulation to an organ or part - in the bitten organism.","definition_xrefs":["GOC:jl","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of process in another organism","termid":"GO:0035738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in impairment of hemostasis in another organism","synonyms":[{"name":"envenomation resulting in impairment of hemostasis in other organism","type":"exact"},{"name":"envenomation resulting in negative regulation of hemostasis in other organism","type":"exact"},{"name":"envenomation, impairing hemostasis in other organism","type":"exact"}],"termid":"GO:0044483"}


id: PBO:0111334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Cic1/Utp30 family involved in ribosome biogenesis","termid":"PBO:0111334"}


id: PBO:0018089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein Rad9 homolog Crb2","termid":"PBO:0018089"}


id: GO:0009386
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Translational attenuation is a regulatory mechanism analogous to ribosome-mediated transcriptional attenuation. The system requires the presence of a short ORF, called a leader peptide, encoded in the mRNA upstream of the ribosome-binding site and start codon of the gene whose translation is to be regulated. Certain conditions, such as presence of the antibiotic tetracycline in bacteria or amino acid starvation, may cause slowing or stalling of the ribosome translating the leader peptide. The stalled ribosome masks a region of the mRNA and affects which of two alternative mRNA folded structures will form, therefore controlling whether or not a ribosome will bind and initiate translation of the downstream gene. Translational attenuation is analogous to ribosome-mediated transcriptional attenuation, in which mRNA remodeling caused by ribosome stalling regulates transcriptional termination rather than translational initiation.","definition_xrefs":["PMID:15805513","PMID:15694341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translation","termid":"GO:0006417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"translational attenuation","termid":"GO:0009386"}


id: FYPO:0003968
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an elongated germ tube that has a larger diameter and volume than normal, then initiates growth from the opposite end of the spore body, and does not go on to form a viable dividing cell. The cell may undergo one or two rounds of nuclear division, but does not undergo cytokinesis.","definition_xrefs":["PMID:9105045","PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, with swollen elongated germ tube","termid":"FYPO:0002911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, with swollen elongated germ tube and bidirectional cell growth from spore body","synonyms":[{"name":"inviable after spore germination, without cell division, with swollen elongated cell and bidirectional cell growth from spore body","type":"exact"},{"name":"lethal after spore germination, without cell division, with swollen elongated germ tube and bidirectional cell growth from spore body","type":"exact"}],"termid":"FYPO:0003968"}


id: GO:1903195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of L-dopa biosynthetic process.","definition_xrefs":["GOC:PARL","GOC:TermGenie","GO_REF:0000058","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"is_a","term_name":"regulation of amino acid biosynthetic process","termid":"GO:2000282"},{"relation_name":"regulates","term_name":"L-dopa biosynthetic process","termid":"GO:1903185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"regulation of L-dopa biosynthetic process","synonyms":[{"name":"regulation of L-dopa anabolism","type":"exact"},{"name":"regulation of L-dopa biosynthesis","type":"exact"},{"name":"regulation of L-dopa formation","type":"exact"},{"name":"regulation of L-dopa synthesis","type":"exact"}],"termid":"GO:1903195"}


id: GO:0035397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Positive regulation of an adaptive immune response mediated via cytokine production by helper T cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"helper T cell enhancement of adaptive immune response","synonyms":[{"name":"provision of T cell help","type":"exact"}],"termid":"GO:0035397"}


id: PBO:0031197
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_canavanine","termid":"PBO:0031197"}


id: FYECO:0000067
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which lauric acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ fatty acid","termid":"FYECO:0000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ lauric acid","termid":"FYECO:0000067"}


id: MONDO:1011018
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"L-2-hydroxyglutaricacidemia that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-2-hydroxyglutaricacidemia, non-human animal","termid":"MONDO:1010244"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-2-hydroxyglutaricacidemia, dog","secondary_identifiers":["OMIA:001371-9615"],"termid":"MONDO:1011018","xrefs":{"Monarch":{"xref_id":"1011018"}}}


id: PBO:0075871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST3 beta-galactoside alpha-2,3-sialyltransferase 1","termid":"PBO:0075871"}


id: MONDO:0012728
data:
  {"annotated_genes":["SJAG_00409","SJAG_01012"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84282,84283],"is_not":false,"summary":null,"term":"MONDO:0012728"}]},"cv_name":"mondo","definition":"Any Brugada syndrome in which the cause of the disease is a mutation in the GPD1L gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Brugada syndrome","termid":"MONDO:0015263"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_01012":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Brugada syndrome 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C2673193","OMIM:611777","DOID:0110219","MEDGEN:382031","GARD:15526","MESH:C567087"],"synonyms":[{"name":"BRGDA2","type":"exact"},{"name":"Brugada syndrome 2","type":"exact"},{"name":"Brugada syndrome caused by mutation in GPD1L","type":"exact"},{"name":"Brugada syndrome type 2","type":"exact"},{"name":"GPD1L Brugada syndrome","type":"exact"}],"termid":"MONDO:0012728","terms_by_termid":{"MONDO:0012728":null},"xrefs":{"Monarch":{"xref_id":"0012728"}}}


id: PBO:0055697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LLLL and CFNLAS motif containing 1","termid":"PBO:0055697"}


id: GO:0018531
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-6-hydroxynicotine + H2O + O2 = 6-hydroxypseudooxynicotine + H2O2.","definition_xrefs":["RHEA:11880","EC:1.5.3.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxy-nicotine oxidase activity","termid":"GO:0019116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"(S)-6-hydroxynicotine oxidase activity","secondary_identifiers":["MetaCyc:S-6-HYDROXYNICOTINE-OXIDASE-RXN","KEGG_REACTION:R03202","UM-BBD_reactionID:r0478"],"synonyms":[{"name":"(S)-6-hydroxynicotine:oxygen oxidoreductase activity","type":"related"},{"name":"6-hydroxy-L-nicotine oxidase activity","type":"exact"},{"name":"6-hydroxy-L-nicotine:oxygen oxidoreductase activity","type":"related"},{"name":"L-6-hydroxynicotine oxidase activity","type":"exact"}],"termid":"GO:0018531"}


id: MONDO:0002580
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant mesenchymal neoplasm with skeletal muscle differentiation that arises from the orbit.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orbit sarcoma","termid":"MONDO:0004943"},{"relation_name":"is_a","term_name":"rhabdomyosarcoma","termid":"MONDO:0005212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"orbit rhabdomyosarcoma","secondary_identifiers":["MESH:C537605","DOID:3259","MEDGEN:83419","NCIT:C4543","SCTID:254994000","UMLS:C0346347"],"synonyms":[{"name":"orbital region rhabdomyosarcoma","type":"exact"},{"name":"orbital region rhabdomyosarcoma (disease)","type":"exact"},{"name":"rhabdomyosarcoma (disease) of orbital region","type":"exact"},{"name":"rhabdomyosarcoma of orbit","type":"exact"},{"name":"rhabdomyosarcoma of the orbit","type":"exact"}],"termid":"MONDO:0002580","xrefs":{"Monarch":{"xref_id":"0002580"}}}


id: MONDO:0006705
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with bacteria of the family BACTEROIDACEAE.","definition_xrefs":["MESH:D016866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gram-negative bacterial infections","termid":"MONDO:0021678"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bacteroidaceae infectious disease","secondary_identifiers":["UMLS:C0085392","MEDGEN:39037"],"synonyms":[{"name":"Bacteroidaceae caused disease or disorder","type":"exact"},{"name":"Bacteroidaceae disease or disorder","type":"exact"},{"name":"Bacteroidaceae infection","type":"related"},{"name":"infection, Bacteroidaceae","type":"related"},{"name":"infections, Bacteroidaceae","type":"related"}],"termid":"MONDO:0006705","xrefs":{"Monarch":{"xref_id":"0006705"}}}


id: PBO:0047340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FBN1 divergent transcript","termid":"PBO:0047340"}


id: PBO:0076048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stathmin 2","termid":"PBO:0076048"}


id: PBO:0057545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 661","termid":"PBO:0057545"}


id: PBO:0013230
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"curator_name","termid":"PBO:0013230"}


id: PBO:0089842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PX domain sorting nexin Snx41","termid":"PBO:0089842"}


id: PBO:0018233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF2 assembly protein","termid":"PBO:0018233"}


id: GO:0048312
data:
  {"annotated_genes":["SJAG_00655","SJAG_04003","SJAG_01741"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106374,106584,110014],"is_not":false,"summary":null,"term":"GO:0048312"}]},"cv_name":"biological_process","definition":"Any process that establishes the spatial arrangement of mitochondria within the cell.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrion distribution","termid":"GO:0048311"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00655":null,"SJAG_01741":null,"SJAG_04003":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"intracellular distribution of mitochondria","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mitochondria positioning within cell","type":"exact"},{"name":"mitochondrion positioning within cell","type":"exact"}],"termid":"GO:0048312","terms_by_termid":{"GO:0048312":null}}


id: FYPO:0005538
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which telomere-telomerase complex assembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex assembly during vegetative growth","termid":"FYPO:0001215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal telomere-telomerase complex assembly","synonyms":[{"name":"normal telomere-telomerase complex assembly during mitotic cell cycle","type":"related"},{"name":"normal telomere-telomerase complex assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0005538"}


id: GO:0000829
data:
  {"annotated_genes":["SJAG_00244"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114187],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033857"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + diphospho-1D-myo-inositol-pentakisphosphate = ADP + bis(diphospho)-1D-myo-inositol-tetrakisphosphate. The isomeric configurations of the diphospho-1D-myo-inositol-pentakisphosphate (PP-IP5) and bis(diphospho)-1D-myo-inositol-tetrakisphosphate (bis-PP-IP4) are unknown.","definition_xrefs":["GOC:elh","PMID:16429326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"},{"relation_name":"is_a","term_name":"inositol phosphate kinase activity","termid":"GO:0180030"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00244":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016301","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"diphosphoinositol pentakisphosphate kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1855182","Reactome:R-HSA-1855157","Reactome:R-HSA-1855194"],"synonyms":[{"name":"PP-IP5 kinase activity","type":"exact"},{"name":"inositol heptakisphosphate kinase activity","type":"exact"}],"termid":"GO:0000829","terms_by_termid":{"GO:0033857":null}}


id: MONDO:0018269
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"White platelet syndrome (WPS) is is a platelet granule disorder characterized by thrombocytopenia, increased mean platelet volumes, decreased platelet responsiveness to aggregating agents, and significant defects in platelet ultrastructural morphology leading to prolonged bleeding times and bleeding.","definition_xrefs":["Orphanet:370131"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha granule disease","termid":"MONDO:0020117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"white platelet syndrome","secondary_identifiers":["UMLS:C2931293","GARD:9282","MEDGEN:419379","MESH:C536702","SCTID:718553004"],"synonyms":[{"name":"platelet granule deficiency disorder","type":"related"}],"termid":"MONDO:0018269","xrefs":{"Monarch":{"xref_id":"0018269"}}}


id: PR:O74542
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC777.03c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74542"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized aminotransferase C777.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.03c","synonyms":[{"name":"Spom972h-SPCC777.03c","type":"exact"}],"termid":"PR:O74542"}


id: GO:0034096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the extent to which the association between sister chromatids of a replicated chromosome is maintained during a meiotic cell cycle.","definition_xrefs":["GOC:vw","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of maintenance of sister chromatid cohesion","termid":"GO:0034093"},{"relation_name":"is_a","term_name":"regulation of maintenance of meiotic sister chromatid cohesion","termid":"GO:0034094"},{"relation_name":"positively_regulates","term_name":"maintenance of meiotic sister chromatid cohesion","termid":"GO:0034090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of maintenance of meiotic sister chromatid cohesion","termid":"GO:0034096"}


id: FYPO:0005021
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein is localized to the actomyosin contractile ring for a shorter time than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased duration of protein localization to cell division site","termid":"FYPO:0002528"},{"relation_name":"is_a","term_name":"abnormal protein localization to actomyosin contractile ring","termid":"FYPO:0002560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"decreased duration of protein localization to actomyosin contractile ring","synonyms":[{"name":"decreased duration of protein localisation to actomyosin contractile ring","type":"exact"},{"name":"decreased duration of protein localization to actomyosin contractile ring during mitotic cell cycle","type":"related"},{"name":"decreased duration of protein localization to actomyosin contractile ring during vegetative growth","type":"exact"},{"name":"decreased duration of protein localization to actomyosin contractile ring involved in mitotic cytokinesis","type":"exact"},{"name":"decreased duration of protein localization to cytokinetic contractile ring","type":"exact"},{"name":"decreased duration of protein localization to mitotic contractile ring","type":"exact"},{"name":"decreased duration of protein recruitment to actomyosin contractile ring","type":"related"},{"name":"reduced duration of protein localization to actomyosin contractile ring","type":"exact"}],"termid":"FYPO:0005021"}


id: PBO:0044395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily C member 23, pseudogene","termid":"PBO:0044395"}


id: GO:0043722
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (4-hydroxyphenyl)acetate + H+ = 4-cresol + CO2.","definition_xrefs":["EC:4.1.1.83","RHEA:22732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"4-hydroxyphenylacetate decarboxylase activity","secondary_identifiers":["KEGG_REACTION:R07312","MetaCyc:4.1.1.83-RXN"],"synonyms":[{"name":"4-(hydroxyphenyl)acetate carboxy-lyase (4-methylphenol-forming)","type":"related"},{"name":"4-Hpd activity","type":"related"},{"name":"4-hydroxyphenylacetate carboxy-lyase activity","type":"related"},{"name":"p-Hpd activity","type":"related"},{"name":"p-hydroxyphenylacetate decarboxylase activity","type":"related"}],"termid":"GO:0043722"}


id: SO:0001300
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N6_isopentenyladenosine is a modified adenosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_adenosine","termid":"SO:0001273"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6_isopentenyladenosine","secondary_identifiers":["RNAMOD:006"],"synonyms":[{"name":"N6 isopentenyladenosine","type":"exact"},{"name":"N6-isopentenyladenosine","type":"exact"},{"name":"i6A","type":"exact"}],"termid":"SO:0001300"}


id: MONDO:0017225
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The null syndrome is part of the Pelizaeus-Merzbacher disease (PMD) spectrum and is characterized by mild PMD features associated with demyelinating peripheral neuropathy.","definition_xrefs":["Orphanet:280234"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Pelizeaus-Merzbacher spectrum disorder","termid":"MONDO:0010714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"null syndrome","secondary_identifiers":["UMLS:C5439441","GARD:17292","MEDGEN:1740046","icd11.foundation:1663254692"],"synonyms":[{"name":"PLP1 null syndrome","type":"exact"},{"name":"Pelizaeus-Merzbacher disease, null syndrome","type":"exact"}],"termid":"MONDO:0017225","xrefs":{"Monarch":{"xref_id":"0017225"}}}


id: RO:0002163
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A is spatially_disjoint_from B if and only if they have no parts in common","direct_ancestors":[{"relation_name":"is_a","term_name":"mereotopologically_related_to","termid":"RO:0002323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spatially_disjoint_from","termid":"RO:0002163"}


id: GO:0050034
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-rhamnofuranose + NAD+ = L-rhamnono-1,4-lactone + H+ + NADH.","definition_xrefs":["EC:1.1.1.173","RHEA:12649"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"L-rhamnose 1-dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R03942","MetaCyc:L-RHAMNOSE-1-DEHYDROGENASE-RXN"],"synonyms":[{"name":"L-rhamnofuranose:NAD+ 1-oxidoreductase activity","type":"related"}],"termid":"GO:0050034"}


id: PBO:0003558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-A, phosphatidylinositol N-acetylglucosaminyltransferase subunit Gpi3 (predicted)","termid":"PBO:0003558"}


id: PBO:0088431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP cyclohydrolase Rib1","termid":"PBO:0088431"}


id: PATO:0000734
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000734 abdominal tone value (obsolete PATO:0000734)","termid":"PATO:0000734"}


id: GO:0010151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Expansion of the chloroplast that usually precedes division.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloroplast organization","termid":"GO:0009658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chloroplast elongation","termid":"GO:0010151"}


id: FYPO:0006709
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, does not occur during a cellular response to salt stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein phosphorylation during cellular response to osmotic stress","termid":"FYPO:0002289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"abolished protein phosphorylation during cellular response to salt stress","synonyms":[{"name":"abolished protein phosphorylation during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"abolished protein phosphorylation during cellular response to salt stress during vegetative growth","type":"exact"},{"name":"protein phosphorylation abolished during cellular response to salt stress","type":"exact"}],"termid":"FYPO:0006709"}


id: MONDO:0013275
data:
  {"annotated_genes":["SJAG_00839"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85410],"is_not":false,"summary":null,"term":"MONDO:0013275"}]},"cv_name":"mondo","definition":"Glucosephosphate isomerase (GPI) deficiency is an erythroenzymopathy characterized by chronic nonspherocytic hemolytic anemia.","definition_xrefs":["Orphanet:712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nonspherocytic hemolytic anemia","termid":"MONDO:0006506"},{"relation_name":"is_a","term_name":"disorder of glycolysis","termid":"MONDO:0017688"},{"relation_name":"is_a","term_name":"anemia due to erythrocyte enzyme disorder","termid":"MONDO:0020585"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00839":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0019254"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0019254","MONDO:0002280","MONDO:0005570","MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"hemolytic anemia due to glucophosphate isomerase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:462080","GARD:16541","OMIM:613470","UMLS:C3150730"],"synonyms":[{"name":"glucosephosphate isomerase deficiency","type":"exact"},{"name":"hemolytic anemia, nonspherocytic, due to glucose phosphate isomerase deficiency","type":"related"}],"termid":"MONDO:0013275","terms_by_termid":{"MONDO:0013275":null},"xrefs":{"Monarch":{"xref_id":"0013275"}}}


id: GO:0008340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathways that regulate the duration of the adult phase of the life-cycle of an animal.","definition_xrefs":["PMID:3424805","PMID:25561524","PMID:273723695"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of adult lifespan","termid":"GO:0008340"}


id: PBO:0090471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin, WD repeat Nup120","termid":"PBO:0090471"}


id: GO:1900828
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-tyrosine.","definition_xrefs":["GOC:TermGenie","PMID:10766779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromatic amino acid metabolic process","termid":"GO:0009072"},{"relation_name":"is_a","term_name":"D-amino acid metabolic process","termid":"GO:0046416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"D-tyrosine metabolic process","synonyms":[{"name":"D-tyrosine metabolism","type":"exact"}],"termid":"GO:1900828"}


id: PBO:0056304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase 1","termid":"PBO:0056304"}


id: MONDO:0010890
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acro-cardio-facial syndrome (ACFS) is a rare genetic disorder characterized by split-hand/split-foot malformation (SHFM), facial anomalies, cleft lip/palate, congenital heart defect (CHD), genital anomalies, and intellectual deficit.","definition_xrefs":["Orphanet:2008"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acrocardiofacial syndrome","secondary_identifiers":["icd11.foundation:976844546","GARD:1167","MEDGEN:324947","MESH:C563936","UMLS:C1838121","OMIM:600460","DOID:0070419"],"synonyms":[{"name":"ACFS","type":"exact"},{"name":"CCGE","type":"related"},{"name":"CCGE syndrome","type":"exact"},{"name":"acrocardiofacial syndrome","type":"exact"},{"name":"cleft palate, CARDIAC defect, genital anomalies, and ectrodactyly","type":"related"},{"name":"cleft palate-cardiac defect-genital anomalies-ectrodactyly syndrome","type":"exact"}],"termid":"MONDO:0010890","xrefs":{"Monarch":{"xref_id":"0010890"}}}


id: GO:0032099
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces appetite.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to food","termid":"GO:0032096"},{"relation_name":"is_a","term_name":"regulation of appetite","termid":"GO:0032098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of appetite","synonyms":[{"name":"appetite suppression","type":"related"},{"name":"down regulation of appetite","type":"exact"},{"name":"down-regulation of appetite","type":"exact"},{"name":"downregulation of appetite","type":"exact"},{"name":"inhibition of appetite","type":"narrow"},{"name":"negative regulation of hunger","type":"related"}],"termid":"GO:0032099"}


id: GO:1904260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of basement membrane assembly involved in embryonic body morphogenesis.","definition_xrefs":["GOC:als","PMID:23940118","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of extracellular matrix assembly","termid":"GO:1901202"},{"relation_name":"is_a","term_name":"regulation of basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:1904259"},{"relation_name":"negatively_regulates","term_name":"basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:2001197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of basement membrane assembly involved in embryonic body morphogenesis","synonyms":[{"name":"down regulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"down-regulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"downregulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"inhibition of basement membrane assembly involved in embryonic body morphogenesis","type":"narrow"}],"termid":"GO:1904260"}


id: PBO:0078558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 46","termid":"PBO:0078558"}


id: PBO:0113404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pyridoxamine-phosphate oxidase-related protein (PNPO-RP); deletion causes significant increase in 4.5.6-NADH3","termid":"PBO:0113404"}


id: PBO:0077929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPTE2 pseudogene 2","termid":"PBO:0077929"}


id: GO:0007182
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of introducing a phosphate group on to a common-partner SMAD protein. A common partner SMAD protein binds to pathway-restricted SMAD proteins forming a complex that translocates to the nucleus.","definition_xrefs":["ISBN:3527303782","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete common-partner SMAD protein phosphorylation (obsolete GO:0007182)","synonyms":[{"name":"co-SMAD protein phosphorylation","type":"exact"},{"name":"common mediator SMAD protein phosphorylation","type":"exact"},{"name":"common partner SMAD protein phosphorylation","type":"exact"},{"name":"common-mediator SMAD protein phosphorylation","type":"exact"}],"termid":"GO:0007182"}


id: PBO:0086110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for biogenesis of 40S (small) ribosomal subunit; has similarity to the beta subunit of trimeric G-proteins and the splicing factor Prp4p; essential gene","termid":"PBO:0086110"}


id: PBO:0085431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane","termid":"PBO:0085431"}


id: GO:0009279
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.","definition_xrefs":["GOC:md","ISBN:0135712254","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"outer membrane","termid":"GO:0019867"},{"relation_name":"part_of","term_name":"external encapsulating structure","termid":"GO:0030312"},{"relation_name":"part_of","term_name":"cell envelope","termid":"GO:0030313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cell outer membrane","synonyms":[{"name":"outer membrane of cell","type":"exact"}],"termid":"GO:0009279"}


id: MONDO:0700002
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any neurological disorder in which the cause of the disease is a mutation in the ATP1A3.","definition_xrefs":["MONDO:patterns/disease_series_by_gene","PMID:20301295","PMID:31178018","PMID:33762331"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP1A3-associated neurological disorder","synonyms":[{"name":"ATP1A3 neurological disorder","type":"exact"},{"name":"ATP1A3 related neurological disorder","type":"exact"},{"name":"neurological disorder caused by mutation in ATP1A3","type":"exact"}],"termid":"MONDO:0700002","xrefs":{"Monarch":{"xref_id":"0700002"}}}


id: PBO:0055926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 37 member A14, pseudogene","termid":"PBO:0055926"}


id: GO:0018053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-valine amide by hydrolysis and oxidation of an interior Val-Gly peptide in a secreted protein.","definition_xrefs":["RESID:AA0100"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-valine amidation (obsolete GO:0018053)","termid":"GO:0018053"}


id: PBO:0065081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich membrane anchor 1","termid":"PBO:0065081"}


id: PBO:0057353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR548A1 host gene","termid":"PBO:0057353"}


id: MONDO:0004232
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A squamous cell carcinoma that arises from the breast parenchyma and is characterized by the presence of large malignant cells that exhibit keratinization.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keratinizing squamous cell carcinoma","termid":"MONDO:0005056"},{"relation_name":"is_a","term_name":"squamous cell breast carcinoma","termid":"MONDO:0006056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"large cell keratinizing variant squamous cell breast carcinoma","secondary_identifiers":["DOID:7461","MEDGEN:274269","NCIT:C40357","UMLS:C1519486"],"synonyms":[{"name":"squamous cell breast carcinoma, large cell keratinizing variant","type":"exact"}],"termid":"MONDO:0004232","xrefs":{"Monarch":{"xref_id":"0004232"}}}


id: GO:0051520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops the active process of bipolar cell growth, polarized growth from both ends of a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of bipolar cell growth","termid":"GO:0051517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"termination of bipolar cell growth","termid":"GO:0051520"}


id: PBO:0053097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late cornified envelope 3E","termid":"PBO:0053097"}


id: PBO:0043240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Charcot-Leyden crystal protein pseudogene 2","termid":"PBO:0043240"}


id: MONDO:0012154
data:
  {"annotated_genes":["SJAG_04553"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85270],"is_not":false,"summary":null,"term":"MONDO:0012154"}]},"cv_name":"mondo","definition":"Any myopia in which the cause of the disease is a mutation in the SCO2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myopia","termid":"MONDO:0001384"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04553":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"myopia 6","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:324696","GARD:9937","MESH:C536105","OMIM:608908","UMLS:C1837148"],"synonyms":[{"name":"MYP6","type":"related"},{"name":"SCO2 myopia (disease)","type":"exact"},{"name":"myopia (disease) caused by mutation in SCO2","type":"exact"},{"name":"myopia 6","type":"exact"},{"name":"myopia type 6","type":"exact"},{"name":"myopia, susceptibility to","type":"related"}],"termid":"MONDO:0012154","terms_by_termid":{"MONDO:0012154":null},"xrefs":{"Monarch":{"xref_id":"0012154"}}}


id: PBO:0004429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase epsilon catalytic subunit Pol2","termid":"PBO:0004429"}


id: MONDO:0008276
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"juvenile polyposis syndrome","termid":"MONDO:0017380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0004335"],"is_obsolete":false,"name":"generalized juvenile polyposis/juvenile polyposis coli","secondary_identifiers":["Orphanet:329971","DOID:0050787","GARD:17508","MEDGEN:356898","UMLS:C1868081"],"synonyms":[{"name":"generalized juvenile polyposis/juvenile polyposis coli","type":"exact"},{"name":"jPS","type":"related"},{"name":"juvenile intestinal polyposis","type":"related"},{"name":"juvenile polyposis coli","type":"related"},{"name":"juvenile polyposis of stomach","type":"related"},{"name":"juvenile polyposis syndrome","type":"related"},{"name":"polyposis, familial, of Entire gastrointestinal tract","type":"related"},{"name":"polyposis, juvenile intestinal","type":"related"}],"termid":"MONDO:0008276","xrefs":{"Monarch":{"xref_id":"0008276"}}}


id: GO:0160147
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA.","definition_xrefs":["EC:5.4.99.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA pseudouridine synthase activity","termid":"GO:0106029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0140098","GO:0003674","GO:0016853","GO:0140101"],"is_obsolete":false,"name":"tRNA pseudouridine(38-40) synthase activity","secondary_identifiers":["MetaCyc:TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN","RHEA:22376"],"synonyms":[{"name":"PSUI activity","type":"exact"},{"name":"tRNA pseudouridylate synthase","type":"exact"}],"termid":"GO:0160147"}


id: PBO:0047349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and leucine rich repeat protein 2","termid":"PBO:0047349"}


id: PBO:0091219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sub-telomeric 5Tm protein family Ftm2","termid":"PBO:0091219"}


id: GO:1904145
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of meiotic cell cycle process involved in oocyte maturation.","definition_xrefs":["GO_REF:0000058","PMID:22674394","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell cycle process","termid":"GO:0010948"},{"relation_name":"is_a","term_name":"negative regulation of meiotic cell cycle","termid":"GO:0051447"},{"relation_name":"is_a","term_name":"negative regulation of oocyte maturation","termid":"GO:1900194"},{"relation_name":"is_a","term_name":"regulation of meiotic cell cycle process involved in oocyte maturation","termid":"GO:1903538"},{"relation_name":"negatively_regulates","term_name":"meiotic cell cycle process involved in oocyte maturation","termid":"GO:1903537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of meiotic cell cycle process involved in oocyte maturation","synonyms":[{"name":"down regulation of meiotic cell cycle process involved in oocyte maturation","type":"exact"},{"name":"down-regulation of meiotic cell cycle process involved in oocyte maturation","type":"exact"},{"name":"downregulation of meiotic cell cycle process involved in oocyte maturation","type":"exact"},{"name":"inhibition of meiotic cell cycle process involved in oocyte maturation","type":"narrow"}],"termid":"GO:1904145"}


id: PBO:0078688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon AAG) 2-1","termid":"PBO:0078688"}


id: PBO:0058410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4779","termid":"PBO:0058410"}


id: PBO:0036518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dom34-Hbs1 translation release factor complex subunit, peloto ortholog Dom34 (predicted)","termid":"PBO:0036518"}


id: GO:0046093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxycytidine metabolic process","termid":"GO:0046092"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside biosynthetic process","termid":"GO:0046126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"deoxycytidine biosynthetic process","synonyms":[{"name":"deoxycytidine anabolism","type":"exact"},{"name":"deoxycytidine biosynthesis","type":"exact"},{"name":"deoxycytidine formation","type":"exact"},{"name":"deoxycytidine synthesis","type":"exact"}],"termid":"GO:0046093"}


id: PBO:0081661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF584 divergent transcript","termid":"PBO:0081661"}


id: PBO:0027750
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_nucleus_during_nitrogen_starvation","termid":"PBO:0027750"}


id: PBO:0072723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RING1 and YY1 binding protein","termid":"PBO:0072723"}


id: GO:0150127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of interleukin-33 production.","definition_xrefs":["GOC:aruk","PMID:29778524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-33 production","termid":"GO:0072639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of interleukin-33 production","secondary_identifiers":["GO:0150130","GO:0150123"],"synonyms":[{"name":"regulation of interleukin-33 biosynthetic process","type":"narrow"},{"name":"regulation of interleukin-33 secretion","type":"narrow"}],"termid":"GO:0150127"}


id: PBO:0018243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA queuosine modification protein","termid":"PBO:0018243"}


id: FYPO:0003829
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic spindle elongation does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"short bipolar mitotic spindle","termid":"FYPO:0000732"},{"relation_name":"is_a","term_name":"abnormal mitotic spindle elongation","termid":"FYPO:0000131"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000337","FYPO:0000002","FYPO:0000641","FYPO:0000054","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished mitotic spindle elongation","synonyms":[{"name":"abolished spindle elongation during mitotic cell cycle","type":"related"},{"name":"mitotic spindle elongation abolished","type":"exact"},{"name":"mitotic spindle elongation abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0003829"}


id: MONDO:0019487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare childhood-onset epilepsy characterized by sudden onset, short lasting absence associated with rhythmical myoclonia of head and shoulders.","definition_xrefs":["Orphanet:86911"],"direct_ancestors":[{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"is_a","term_name":"childhood-onset epilepsy syndrome","termid":"MONDO:0020072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"epilepsy with myoclonic absences","secondary_identifiers":["MEDGEN:140741","NANDO:1200589","SCTID:230422001","icd11.foundation:274380122","UMLS:C0393703","GARD:19087"],"synonyms":[{"name":"EMA","type":"exact"}],"termid":"MONDO:0019487","xrefs":{"Monarch":{"xref_id":"0019487"}}}


id: PBO:0039548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD44 antisense RNA 1","termid":"PBO:0039548"}


id: GO:0070785
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the process in which cells remain attached after division and form thread-like filaments that may penetrate into a solid growth medium.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of growth of unicellular organism as a thread of attached cells","termid":"GO:0070784"},{"relation_name":"is_a","term_name":"negative regulation of filamentous growth of a population of unicellular organisms","termid":"GO:1900429"},{"relation_name":"negatively_regulates","term_name":"growth of unicellular organism as a thread of attached cells","termid":"GO:0070783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of growth of unicellular organism as a thread of attached cells","termid":"GO:0070785"}


id: SO:0000915
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A clone insert that is engineered.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"engineered","termid":"SO:0000783"},{"relation_name":"is_a","term_name":"clone_insert","termid":"SO:0000753"},{"relation_name":"is_a","term_name":"engineered_region","termid":"SO:0000804"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engineered_insert","synonyms":[{"name":"engineered insert","type":"exact"}],"termid":"SO:0000915"}


id: PBO:0080325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 89 pseudogene","termid":"PBO:0080325"}


id: PBO:0002621
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.1.17","termid":"PBO:0002621"}


id: PBO:0049040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 32","termid":"PBO:0049040"}


id: PBO:0067225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 294, pseudogene","termid":"PBO:0067225"}


id: PBO:0040251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy related 7","termid":"PBO:0040251"}


id: GO:0047544
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: biphenyl-2-ol + H+ + NADH + O2 = biphenyl-2,3-diol + H2O + NAD+. Also converts 2,2'-dihydroxybiphenyl into 2,2',3-trihydroxy-biphenyl.","definition_xrefs":["EC:1.14.13.44"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"2-hydroxybiphenyl 3-monooxygenase (NADH) activity","secondary_identifiers":["KEGG_REACTION:R03964","UM-BBD_reactionID:r1423"],"synonyms":[{"name":"2-hydroxybiphenyl,NADH:oxygen oxidoreductase (3-hydroxylating)","type":"related"}],"termid":"GO:0047544"}


id: PR:Q09893
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC24B11.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C24B11.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24B11.05","synonyms":[{"name":"Spom972h-SPAC24B11.05","type":"exact"}],"termid":"PR:Q09893"}


id: FYPO:0002526
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to latrunculin B. Cells stop growing (and may die) at a concentration of latrunculin B that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0000139","FYPO:0002683","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to latrunculin B","synonyms":[{"name":"hypersensitive to latrunculin B","type":"exact"},{"name":"sensitive to LatB","type":"exact"},{"name":"sensitive to latrunculin B during mitotic cell cycle","type":"related"},{"name":"sensitive to latrunculin B during vegetative growth","type":"exact"}],"termid":"FYPO:0002526"}


id: PATO:0000074
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000074 shattering (obsolete PATO:0000074)","termid":"PATO:0000074"}


id: MONDO:0018053
data:
  {"annotated_genes":["SJAG_01235","SJAG_01207","SJAG_03206","SJAG_00995","SJAG_01797","SJAG_01159","SJAG_03112","SJAG_00159"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011125"},{"annotations":[84519],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014615"},{"annotations":[84520],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014619"},{"annotations":[84533],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010495"},{"annotations":[84852],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014841"},{"annotations":[86203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032806"},{"annotations":[85326],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030517"},{"annotations":[85331],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030518"}]},"cv_name":"mondo","definition":"Trichothiodystrophy or TTD is a heterogeneous group disorders characterized by short, brittle hair with low-sulphur content (due to an abnormal synthesis of the sulfur containing keratins).","definition_xrefs":["Orphanet:33364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00159":null,"SJAG_00995":null,"SJAG_01159":null,"SJAG_01207":null,"SJAG_01235":null,"SJAG_01797":null,"SJAG_03112":null,"SJAG_03206":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"trichothiodystrophy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NORD:1292","NANDO:1200627","NCIT:C4924","OMIMPS:601675","DOID:0111866","GARD:12109","icd11.foundation:1366758649","MedDRA:10044628","MEDGEN:363064","SCTID:723551003","UMLS:C1955934"],"synonyms":[{"name":"trichothiodystrophy syndrome","type":"exact"}],"termid":"MONDO:0018053","terms_by_termid":{"MONDO:0010495":null,"MONDO:0011125":null,"MONDO:0014615":null,"MONDO:0014619":null,"MONDO:0014841":null,"MONDO:0030517":null,"MONDO:0030518":null,"MONDO:0032806":null},"xrefs":{"Monarch":{"xref_id":"0018053"}}}


id: FYPO:0004862
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form microtubules that are curved, i.e. follow a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton morphology during vegetative growth","termid":"FYPO:0001418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0002399","FYPO:0000002"],"is_obsolete":false,"name":"curved microtubules","synonyms":[{"name":"curved microtubules during mitotic cell cycle","type":"related"},{"name":"curved microtubules during vegetative growth","type":"exact"}],"termid":"FYPO:0004862"}


id: PBO:0067532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 676, pseudogene","termid":"PBO:0067532"}


id: PBO:0064996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PR/SET domain 4","termid":"PBO:0064996"}


id: MONDO:0033486
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"leukodystrophy, hypomyelinating, 14","secondary_identifiers":["DOID:0080296","OMIM:617899","UMLS:C4693535","GARD:16266","MEDGEN:1635255"],"synonyms":[{"name":"HLD14","type":"related"},{"name":"hypomyelinating leukodystrophy 14","type":"related"},{"name":"leukodystrophy, hypomyelinating, 14","type":"exact"}],"termid":"MONDO:0033486","xrefs":{"Monarch":{"xref_id":"0033486"}}}


id: MONDO:0600008
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome that occurs after therapeutic infusion of antibodies into the blood and is characterized by nausea, headache, tachycardia, hypotension, rash, and shortness of breath. It is caused by the release of cytokines from the cells that are targeted by the antibodies. Most patients experience a mild to moderate reaction; however, the reaction may be severe and life-threatening.","definition_xrefs":["NCIT:C78251","PMID:24876563"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"cytokine release syndrome","secondary_identifiers":["MEDGEN:215297","MESH:D000080424","UMLS:C0948245"],"synonyms":[{"name":"CRS","type":"exact"},{"name":"cytokine storm","type":"exact"},{"name":"cytokine-associated toxicity","type":"exact"}],"termid":"MONDO:0600008","xrefs":{"Monarch":{"xref_id":"0600008"}}}


id: MONDO:0000029
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete corticosterone methyloxidase deficiency (obsolete MONDO:0000029)","termid":"MONDO:0000029","xrefs":{"Monarch":{"xref_id":"0000029"}}}


id: PATO:0001345
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe mating type","termid":"PATO:0001343"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"h minus","synonyms":[{"name":"M","type":"exact"},{"name":"h -","type":"exact"}],"termid":"PATO:0001345"}


id: PATO:0001973
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tapered","termid":"PATO:0001500"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cuspidate","termid":"PATO:0001973"}


id: MONDO:0007017
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Detachment of the vitreous humor from the retina.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitreous disorder","termid":"MONDO:0004860"},{"relation_name":"is_a","term_name":"inherited vitreoretinopathy","termid":"MONDO:0020246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"vitreous detachment","secondary_identifiers":["EFO:1001238","MedDRA:10047650","MESH:D020255","SCTID:53772007","DOID:9726","MEDGEN:140839","NCIT:C50807","UMLS:C0423361"],"synonyms":[{"name":"detachment Of vitreous","type":"exact"},{"name":"vitreous, detachment Of","type":"exact"}],"termid":"MONDO:0007017","xrefs":{"Monarch":{"xref_id":"0007017"}}}


id: PBO:0047264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 245 member A","termid":"PBO:0047264"}


id: PBO:0074926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 94","termid":"PBO:0074926"}


id: MONDO:1010488
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ventricular septal defect that occurs in turkey.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"ventricular septal defect, non-human animal","termid":"MONDO:1010022"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ventricular septal defect, turkey","secondary_identifiers":["OMIA:001041-9103"],"termid":"MONDO:1010488","xrefs":{"Monarch":{"xref_id":"1010488"}}}


id: RO:0003002
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Holds between protein a (a transcription factor) and DNA element b if and only if a diminishes the process of transcription of b.","direct_ancestors":[{"relation_name":"is_a","term_name":"activity_directly_negatively_regulates_activity_of","termid":"RO:0002449"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"represses_expression_of","termid":"RO:0003002"}


id: GO:0009884
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a cytokinin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:lr","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"cytokinin receptor activity","termid":"GO:0009884"}


id: PBO:0041262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q B chain","termid":"PBO:0041262"}


id: MONDO:0035401
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"anencephaly","termid":"MONDO:0000819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"isolated anencephaly","secondary_identifiers":["icd11.foundation:452325024","Orphanet:563609","GARD:22254","ICD10CM:Q00.0"],"termid":"MONDO:0035401","xrefs":{"Monarch":{"xref_id":"0035401"}}}


id: PBO:0036535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron hydrogenase Nar1 (predicted)","termid":"PBO:0036535"}


id: PBO:0005370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing coactivator SRRM1 (predicted)","termid":"PBO:0005370"}


id: PR:Q11004
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A eukaryotic-type peptidyl-prolyl cis-trans isomerase D that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02048","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40 kDa peptidyl-prolyl cis-trans isomerase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B3.03c","secondary_identifiers":["UniProtKB:Q11004"],"synonyms":[{"name":"CYP-40 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PPIase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Rotamase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PPID","type":"exact"},{"name":"cyclophilin-40 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q11004"}


id: PBO:0110350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CMPK1 pseudogene 2","termid":"PBO:0110350"}


id: GO:0051124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly of a synapse at a neuromuscular junction.","definition_xrefs":["PMID:20215342"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse assembly","termid":"GO:0007416"},{"relation_name":"is_a","term_name":"neuromuscular junction development","termid":"GO:0007528"},{"relation_name":"is_a","term_name":"developmental growth","termid":"GO:0048589"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"synaptic assembly at neuromuscular junction","synonyms":[{"name":"cholinergic synaptogenesis","type":"related"},{"name":"synaptic growth at neuromuscular junction","type":"related"}],"termid":"GO:0051124"}


id: FYPO:0003032
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell when the cell is subject to glucose starvation is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level","termid":"FYPO:0000826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"decreased RNA level during glucose starvation","synonyms":[{"name":"decreased RNA accumulation during glucose starvation","type":"related"},{"name":"decreased RNA level during cellular response to glucose starvation","type":"exact"},{"name":"decreased RNA level during glucose depletion","type":"exact"},{"name":"decreased RNA level during glucose deprivation","type":"exact"},{"name":"decreased RNA level during glucose limitation","type":"related"},{"name":"decreased transcript level during glucose starvation","type":"exact"},{"name":"reduced RNA level during glucose starvation","type":"exact"}],"termid":"FYPO:0003032"}


id: PBO:0064644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPDPF pseudogene 1","termid":"PBO:0064644"}


id: GO:0008435
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Functions to retard or prevent coagulation. Often used in the context of blood or milk coagulation.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete anticoagulant activity (obsolete GO:0008435)","synonyms":[{"name":"anticoagulant activity","type":"exact"}],"termid":"GO:0008435"}


id: PBO:0090797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Nop8","termid":"PBO:0090797"}


id: MOD:00702
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes atoms of particular common isotopes with atoms or groups containing isotopes that are not the most common.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by chemical process","termid":"MOD:01156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isotope labeled residue","synonyms":[{"name":"IsoTagRes","type":"exact"},{"name":"SILAC","type":"exact"}],"termid":"MOD:00702"}


id: PBO:0081198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger imprinted 3","termid":"PBO:0081198"}


id: GO:0052461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of pathogen-associated molecular pattern-induced symbiont innate immunity (obsolete GO:0052461)","synonyms":[{"name":"modulation by organism of pathogen-associated molecular pattern-induced symbiont innate immunity","type":"exact"}],"termid":"GO:0052461"}


id: GO:0052050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An interaction with the host organism mediated by a substance secreted by the other organism by a type IV secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete interaction with host via substance secreted by type IV secretion system (obsolete GO:0052050)","termid":"GO:0052050"}


id: PBO:0083759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential helicase component of heterohexameric MCM2-7 complexes; MCM2-7 complexes bind pre-replication complexes on DNA and melt DNA prior to replication; forms an Mcm4p-6p-7p subcomplex; shows nuclear accumulation in G1; homolog of S. pombe Cdc21p","termid":"PBO:0083759"}


id: GO:0005080
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to protein kinase C.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase binding","termid":"GO:0019901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"protein kinase C binding","secondary_identifiers":["GO:0072568","GO:0072569","GO:0097024"],"synonyms":[{"name":"PKC alpha binding","type":"exact"},{"name":"PKC binding","type":"exact"},{"name":"PKC delta binding","type":"exact"},{"name":"PKC eta binding","type":"exact"},{"name":"protein kinase C alpha binding","type":"narrow"},{"name":"protein kinase C delta binding","type":"narrow"},{"name":"protein kinase C eta binding","type":"narrow"}],"termid":"GO:0005080"}


id: MONDO:0011092
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ribbing disease is a rare bone disease that causes bony growths on the long bones, such as the thigh bone and shine bone.Ribbing diseaseaffects women more frequently than men. The most common symptom is pain. A single studyof 14 patients found an association between Ribbing disease and impaired exercise tolerance and changes in heart function (i.e., increased prevalence of arrhythmia and changes in left ventricular systolic and diastolic function).The cause of the condition iscurrently unknown, although some cases appear to be genetic and inherited in an autosomal recessive fashion.Optimal treatment for the disease is largely unknown. There have been case reports describingtreatment of Ribbing diseasewith bisphosphonate pamidronate. Results have been mixed. The conditionoften resolves on its own; howevercases of progressive disease have been described.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribbing disease","secondary_identifiers":["OMIM:601477","MESH:C537613","UMLS:C1832273","MEDGEN:321923"],"synonyms":[{"name":"diaphyseal sclerosis, multiple","type":"related"},{"name":"hereditary multiple diaphyseal sclerosis","type":"related"},{"name":"multiple diaphyseal sclerosis","type":"related"},{"name":"ribbing disease","type":"exact"}],"termid":"MONDO:0011092","xrefs":{"Monarch":{"xref_id":"0011092"}}}


id: FYPO:0002737
data:
  {"alleles_by_uniquename":{"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"},"SJAG_03596:allele-1":{"allele_type":"amino_acid_mutation","description":"L264P,P442T","gene_uniquename":"SJAG_03596","name":"cdc15-A","uniquename":"SJAG_03596:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[118446],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000231"},{"annotations":[118451],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000729"},{"annotations":[118492],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"},{"annotations":[118447],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0000118"}],"single_locus_phenotype":[{"annotations":[118439],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000231"},{"annotations":[118340,118338,118339],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"FYPO:0000671"},{"annotations":[118656,118661],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002998"},{"annotations":[118250,118364],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"},{"annotations":[118472],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0002026"},{"annotations":[118440,118552],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000729"},{"annotations":[118493],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"},{"annotations":[118305,118307,118306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000324"},{"annotations":[118437,118436],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0000118"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell does not execute a mitotic cell cycle process normally. 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id: PBO:0031350
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_population_growth_at_low_temperature","termid":"PBO:0031350"}


id: PBO:0052034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"junctional sarcoplasmic reticulum protein 1","termid":"PBO:0052034"}


id: PBO:0056412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane associated ring-CH-type finger 9","termid":"PBO:0056412"}


id: GO:0120234
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A glycocalyx on the the endolymphatic surface of a cochlear hair cell that coats the external surface of each stereocilium and maintains a small distance between adjacent stereocilia in the bundle.","definition_xrefs":["GOC:krc","ISBN:9781461268918","PMID:31444330","PMID:3583936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycocalyx","termid":"GO:0030112"},{"relation_name":"part_of","term_name":"stereocilium","termid":"GO:0032420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"stereocilium coat","synonyms":[{"name":"auditory hair cell glycocalyx","type":"broad"},{"name":"stereocilium glycocalyx","type":"exact"}],"termid":"GO:0120234"}


id: PBO:0113280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pleiotropic negative transcriptional regulator; involved in Ras-cAMP and lysine biosynthetic pathways and nitrogen regulation; involved in retrograde (RTG) mitochondria-to-nucleus signaling","termid":"PBO:0113280"}


id: PBO:0000295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein (predicted)","termid":"PBO:0000295"}


id: PBO:0045110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dimethylglycine dehydrogenase","termid":"PBO:0045110"}


id: GO:0014918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which pressure natriuresis increases rate of natriuresis.","definition_xrefs":["GOC:mtg_cardio"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of natriuresis by pressure natriuresis (obsolete GO:0014918)","synonyms":[{"name":"positive regulation of natriuresis by pressure natriuresis","type":"exact"}],"termid":"GO:0014918"}


id: MONDO:0011384
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"essential hypertension","termid":"MONDO:0001134"},{"relation_name":"excluded_subClassOf","term_name":"essential hypertension, genetic","termid":"MONDO:0007781"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypertension, essential, susceptibility to, 1","secondary_identifiers":["OMIM:603918","MEDGEN:395143","UMLS:C1858967"],"synonyms":[{"name":"Hyt1","type":"related"},{"name":"hypertension, essential, susceptibility to, 1","type":"exact"},{"name":"hypertension, essential, susceptibility to, type 1","type":"exact"}],"termid":"MONDO:0011384","xrefs":{"Monarch":{"xref_id":"0011384"}}}


id: MONDO:0000914
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A CADASIL characterized by migraine, strokes, and white matter lesions that has material basis in heterozygous mutation in the NOTCH3 gene on chromosome 19p13.","definition_xrefs":["DOID:0111035","PMID:8878478","PMID:10476042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral arteriopathy with subcortical infarcts and leukoencephalopathy","termid":"MONDO:0007432"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1","secondary_identifiers":["NORD:883","SCTID:390936003","GARD:1049","NCIT:C84606","icd11.foundation:1621899838","MEDGEN:1634330","OMIM:125310","Orphanet:136","UMLS:C4551768","MESH:D046589","MedDRA:10065551"],"synonyms":[{"name":"CADASIL","type":"exact"},{"name":"CADASIL 1","type":"exact"},{"name":"CADASIL syndrome","type":"exact"},{"name":"CADASIL type 1","type":"exact"},{"name":"CADASIL1","type":"exact"},{"name":"CASIL","type":"exact"},{"name":"autosomal dominant cerebral arteriopathy with subcortical infarcts and leukoencephalopathy type 1","type":"exact"},{"name":"cerebral arteriopathy with subcortical infarcts and leukoencephalopathy","type":"related"},{"name":"cerebral arteriopathy with subcortical infarcts and leukoencephalopathy 1","type":"exact"},{"name":"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1","type":"exact"},{"name":"cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy","type":"broad"},{"name":"dementia, hereditary multi-infarct type","type":"exact"},{"name":"familial vascular leukoencephalopathy","type":"related"},{"name":"hereditary multi-infarct dementia","type":"exact"}],"termid":"MONDO:0000914","xrefs":{"Monarch":{"xref_id":"0000914"}}}


