# terms

id: PBO:0065990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recombination activating 2","termid":"PBO:0065990"}


id: PBO:0064031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 65","termid":"PBO:0064031"}


id: MONDO:0014753
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive optic atrophy (obsolete MONDO:0014753)","secondary_identifiers":["Orphanet:98676"],"synonyms":[{"name":"autosomal recessive isolated optic atrophy","type":"narrow"},{"name":"autosomal recessive nonsyndromic optic atrophy","type":"narrow"}],"termid":"MONDO:0014753","xrefs":{"Monarch":{"xref_id":"0014753"}}}


id: PBO:0073497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SGSM2 antisense RNA 1","termid":"PBO:0073497"}


id: PBO:0077841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor protein D52","termid":"PBO:0077841"}


id: GO:0034540
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-monobromobisphenol A + 2 H+ + 2 e- = bisphenol A + HBr.","definition_xrefs":["UM-BBD_reactionID:r0824"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-monobromobisphenol A reductive dehalogenase activity (obsolete GO:0034540)","termid":"GO:0034540"}


id: GO:0120187
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to chromatin.","definition_xrefs":["PMID:20889714","PMID:29899453"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein localization","termid":"GO:1903829"},{"relation_name":"is_a","term_name":"regulation of protein localization to chromatin","termid":"GO:1905634"},{"relation_name":"positively_regulates","term_name":"protein localization to chromatin","termid":"GO:0071168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to chromatin","synonyms":[{"name":"positive regulation of protein localisation to chromatin","type":"exact"}],"termid":"GO:0120187"}


id: PBO:0083502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified non essential genes ERV2/YPR037C and TIP41/YPR040W","termid":"PBO:0083502"}


id: PBO:0078116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 5","termid":"PBO:0078116"}


id: MONDO:0000116
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cortical dysplasia, complex, with other brain malformations (obsolete MONDO:0000116)","termid":"MONDO:0000116","xrefs":{"Monarch":{"xref_id":"0000116"}}}


id: PBO:0046662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"espin pseudogene","termid":"PBO:0046662"}


id: PR:O94663
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar-sorting protein SNF8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02784","PANTHER:PTHR12806:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar-sorting protein dot2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.05c","secondary_identifiers":["UniProtKB:O94663"],"synonyms":[{"name":"ELL-associated protein of 30 kDa homolog dot2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SNF8","type":"exact"},{"name":"defective organization of telomere protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94663"}


id: PBO:0041948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromobox 8","termid":"PBO:0041948"}


id: MONDO:0019825
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital coronary artery aneurysm is a rare congenital coronary artery malformation defined as a more than 1.5 fold the normal size dilatation of a coronary artery segment with no identified underlying inflammatory or connective tissue disease. It may be asymptomatic or may present with angina pectoris, myocardial infarction, sudden cardiac death, fistula formation, pericardial tamponade, compression of surrounding structures, or congestive heart failure.","definition_xrefs":["Orphanet:95491"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coronary artery congenital malformation","termid":"MONDO:0015203"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital coronary artery aneurysm","secondary_identifiers":["SCTID:204378009","GARD:19273","MEDGEN:573848","UMLS:C0340627"],"synonyms":[{"name":"congenital coronary aneurysm","type":"exact"}],"termid":"MONDO:0019825","xrefs":{"Monarch":{"xref_id":"0019825"}}}


id: FYPO:0002379
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an elongated germ tube, but does not go on to form a viable dividing cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, with abnormal germ tube morphology","termid":"FYPO:0000313"},{"relation_name":"is_a","term_name":"inviable after spore germination with elongated germ tube","termid":"FYPO:0000314"},{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, elongated cell","termid":"FYPO:0004603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000004","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, with elongated germ tube","synonyms":[{"name":"inviable germinated spore, without cell division, with elongated germ tube","type":"exact"},{"name":"lethal after spore germination, without cell division, with elongated germ tube","type":"exact"}],"termid":"FYPO:0002379"}


id: MONDO:0021531
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A fibroma that involves the lung.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroma","termid":"MONDO:0005167"},{"relation_name":"is_a","term_name":"lung neoplasm","termid":"MONDO:0021117"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroma of lung","secondary_identifiers":["SCTID:707387004","NCIT:C5658","UMLS:C1334444","MEDGEN:272803"],"synonyms":[{"name":"fibroma of the lung","type":"exact"},{"name":"lung fibroma","type":"exact"},{"name":"pulmonary fibroma","type":"exact"}],"termid":"MONDO:0021531","xrefs":{"Monarch":{"xref_id":"0021531"}}}


id: PR:O59827
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A disulfide-bond oxidoreductase YfcG that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO05017","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC965.07c","secondary_identifiers":["UniProtKB:O59827"],"synonyms":[{"name":"GST-II (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-yfcG","type":"exact"}],"termid":"PR:O59827"}


id: MONDO:0000603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hypersensitivity reaction type II disease that involves the cardiovascular system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiovascular disorder","termid":"MONDO:0004995"},{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune disorder of cardiovascular system","secondary_identifiers":["DOID:0060051"],"synonyms":[{"name":"cardiovascular system autoimmune disease","type":"exact"},{"name":"cardiovascular system hypersensitivity reaction type II disease","type":"exact"}],"termid":"MONDO:0000603","xrefs":{"Monarch":{"xref_id":"0000603"}}}


id: MONDO:0016987
data:
  {"annotated_genes":["SJAG_16459","SJAG_01229"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84987,84988],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008695"}]},"cv_name":"mondo","definition":"Neuroacanthocytosis (NA) syndromes are a group of genetic diseases characterized by the association of red blood cell acanthocytosis (deformed erythrocytes with spike-like protrusions) and progressive degeneration of the basal ganglia.","definition_xrefs":["Orphanet:263440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"is_a","term_name":"Huntington disease-like syndrome","termid":"MONDO:0015548"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01229":null,"SJAG_16459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"neuroacanthocytosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NORD:1501","icd11.foundation:1012724153","GARD:10902","DOID:0050765","NANDO:1200013","MESH:D054546","NCIT:C84926"],"synonyms":[{"name":"neuroacanthocytosis syndrome","type":"related"}],"termid":"MONDO:0016987","terms_by_termid":{"MONDO:0008695":null},"xrefs":{"Monarch":{"xref_id":"0016987"}}}


id: PBO:0050915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon induced transmembrane protein 1","termid":"PBO:0050915"}


id: PBO:0004031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor complex subunit Iws1 (predicted)","termid":"PBO:0004031"}


id: PBO:0066668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ripply transcriptional repressor 1","termid":"PBO:0066668"}


id: GO:0045863
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving pteridine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of pteridine metabolic process","termid":"GO:0042068"},{"relation_name":"negatively_regulates","term_name":"pteridine metabolic process","termid":"GO:0019889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of pteridine metabolic process","synonyms":[{"name":"down regulation of pteridine metabolic process","type":"exact"},{"name":"down-regulation of pteridine metabolic process","type":"exact"},{"name":"downregulation of pteridine metabolic process","type":"exact"},{"name":"inhibition of pteridine metabolic process","type":"narrow"},{"name":"negative regulation of pteridine metabolism","type":"exact"}],"termid":"GO:0045863"}


id: PR:Q9UUJ0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pvg5 gene.","definition_xrefs":["UniProtKB:Q9UUJ0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvylated Gal-beta-1,3-epitope synthesis protein 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F8.02c","synonyms":[{"name":"PvGal synthesis protein 5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pvg5","type":"exact"},{"name":"meiotically up-regulated gene 50 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUJ0"}


id: RO:0002024
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2).  For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"directly_regulated_by","termid":"RO:0002022"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"directly_positively_regulated_by","termid":"RO:0002024"}


id: PBO:0091867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein, S. japonicus protein (SJAG_00124) predicted on opposite strand, one is likely incorrect, similarity detected with tblastn (S. japonicus 4008650-4008727) in this frame","termid":"PBO:0091867"}


id: FYPO:0004799
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the second meiotic nuclear division does not occur during a cycle of zygotic meiosis and sporulation. Zygotic meiosis and sporulation take place under conditions of continuous nitrogen starvation, in which haploid cells of the opposite mating types conjugate to form diploid zygotes that proceed immediately to undergo meiosis and sporulation.","definition_xrefs":["PomBase:mah","PMID:25891897","PMID:22558440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished meiosis II","termid":"FYPO:0003379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"abolished zygotic meiosis II","synonyms":[{"name":"abolished meiosis II during zygotic meiosis","type":"exact"},{"name":"abolished zygotic second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0004799"}


id: GO:0036520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling that mediates the transfer of information from an astrocyte to a dopaminergic neuron.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:21752258","PMID:12794311"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell-neuron signaling","termid":"GO:0150098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"astrocyte-dopaminergic neuron signaling","synonyms":[{"name":"astrocyte-dopaminergic neuron cell signaling","type":"exact"},{"name":"dopaminergic neuron-astrocyte crosstalk","type":"related"},{"name":"mesencephalic dopaminergic neuron-astrocyte crosstalk","type":"narrow"},{"name":"midbrain dopaminergic neuron-astrocyte crosstalk","type":"narrow"}],"termid":"GO:0036520"}


id: GO:1901875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of post-translational protein modification.","definition_xrefs":["PMID:21209915","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein modification process","termid":"GO:0031401"},{"relation_name":"is_a","term_name":"regulation of post-translational protein modification","termid":"GO:1901873"},{"relation_name":"positively_regulates","term_name":"post-translational protein modification","termid":"GO:0043687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of post-translational protein modification","synonyms":[{"name":"activation of PTM","type":"exact"},{"name":"activation of post-translational amino acid modification","type":"exact"},{"name":"activation of post-translational modification","type":"exact"},{"name":"activation of post-translational protein modification","type":"narrow"},{"name":"activation of posttranslational amino acid modification","type":"exact"},{"name":"activation of posttranslational modification","type":"exact"},{"name":"activation of posttranslational protein modification","type":"exact"},{"name":"positive regulation of PTM","type":"exact"},{"name":"positive regulation of post-translational amino acid modification","type":"exact"},{"name":"positive regulation of post-translational modification","type":"exact"},{"name":"positive regulation of posttranslational amino acid modification","type":"exact"},{"name":"positive regulation of posttranslational modification","type":"exact"},{"name":"positive regulation of posttranslational protein modification","type":"exact"},{"name":"up regulation of PTM","type":"exact"},{"name":"up regulation of post-translational amino acid modification","type":"exact"},{"name":"up regulation of post-translational modification","type":"exact"},{"name":"up regulation of post-translational protein modification","type":"exact"},{"name":"up regulation of posttranslational amino acid modification","type":"exact"},{"name":"up regulation of posttranslational modification","type":"exact"},{"name":"up regulation of posttranslational protein modification","type":"exact"},{"name":"up-regulation of PTM","type":"exact"},{"name":"up-regulation of post-translational amino acid modification","type":"exact"},{"name":"up-regulation of post-translational modification","type":"exact"},{"name":"up-regulation of post-translational protein modification","type":"exact"},{"name":"up-regulation of posttranslational amino acid modification","type":"exact"},{"name":"up-regulation of posttranslational modification","type":"exact"},{"name":"up-regulation of posttranslational protein modification","type":"exact"},{"name":"upregulation of PTM","type":"exact"},{"name":"upregulation of post-translational amino acid modification","type":"exact"},{"name":"upregulation of post-translational modification","type":"exact"},{"name":"upregulation of post-translational protein modification","type":"exact"},{"name":"upregulation of posttranslational amino acid modification","type":"exact"},{"name":"upregulation of posttranslational modification","type":"exact"},{"name":"upregulation of posttranslational protein modification","type":"exact"}],"termid":"GO:1901875"}


id: GO:0002754
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of a ligand to an intracellular vesicle pattern recognition receptor (PRR). PRRs bind pathogen-associated molecular pattern (PAMPs), structures conserved among microbial species.","definition_xrefs":["GOC:ar","PMID:15199967","ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0002753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"endosomal pattern recognition receptor signaling pathway","synonyms":[{"name":"intracellular endosomal pattern recognition receptor signaling pathway","type":"exact"},{"name":"intracellular vesicle PAMP receptor signaling pathway","type":"related"},{"name":"intracellular vesicle PRR signaling pathway","type":"related"},{"name":"intracellular vesicle pathogen receptor signaling pathway","type":"related"},{"name":"intracellular vesicle pattern recognition receptor signaling pathway","type":"related"},{"name":"intracellular vesicle pattern recognition receptor signalling pathway","type":"related"}],"termid":"GO:0002754"}


id: PATO:0000848
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000848 relative auditory acuity (obsolete PATO:0000848)","termid":"PATO:0000848"}


id: GO:2001136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endocytic recycling.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular transport","termid":"GO:0032387"},{"relation_name":"is_a","term_name":"regulation of endocytic recycling","termid":"GO:2001135"},{"relation_name":"negatively_regulates","term_name":"endocytic recycling","termid":"GO:0032456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of endocytic recycling","synonyms":[{"name":"negative regulation of retrograde transport of endocytic vesicles","type":"related"}],"termid":"GO:2001136"}


id: MONDO:0001161
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by an enduring pattern of extreme social detachment and lack of involvement in interpersonal activities, coupled with emotional coldness.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"personality disorder","termid":"MONDO:0002028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"schizoid personality disorder","secondary_identifiers":["MESH:D012557","UMLS:C0036339","icd11.foundation:1524611454","ICD9:301.2","DOID:10936","SCTID:52954000","MEDGEN:20662","NCIT:C92631","ICD10CM:F60.1","ICD9:301.20"],"termid":"MONDO:0001161","xrefs":{"Monarch":{"xref_id":"0001161"}}}


id: GO:0019643
data:
  {"annotated_genes":["SJAG_03920"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116200],"is_not":false,"summary":null,"term":"GO:0019643"}]},"cv_name":"biological_process","definition":"A pathway leading to the fixation of two molecules of CO2 and the production of one molecule of acetyl-CoA; essentially the oxidative TCA cycle running in reverse. Acetyl-CoA is reductively carboxylated to pyruvate, from which all other central metabolites can be formed. Most of the enzymes of reductive and oxidative TCA cycle are shared, with the exception of three key enzymes that allow the cycle to run in reverse: ATP citrate lyase, 2-oxoglutarate:ferredoxin oxidoreductase, and fumarate reductase. 2-oxoglutarate:ferredoxin oxidoreductase catalyzes the carboxylation of succinyl-CoA to 2-oxoglutarate, ATP citrate lyase the ATP-dependent cleavage of citrate to acetyl-CoA and oxaloacetate, and fumarate reductase the reduction of fumarate forming succinate.","definition_xrefs":["GOC:jl","PMID:15838028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon fixation","termid":"GO:0015977"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"reductive tricarboxylic acid cycle","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0019644"],"synonyms":[{"name":"reductive Kreb's cycle","type":"exact"},{"name":"reductive TCA cycle","type":"exact"},{"name":"reductive carboxylate cycle","type":"exact"},{"name":"reductive carboxylic acid cycle","type":"exact"},{"name":"reductive citric acid pathway","type":"exact"}],"termid":"GO:0019643","terms_by_termid":{"GO:0019643":null}}


id: GO:0035921
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled breakdown of a desmosome. A desmosome is a patch-like intercellular junction found in vertebrate tissues, consisting of parallel zones of two cell membranes, separated by an space of 25-35 nm, and having dense fibrillar plaques in the subjacent cytoplasm.","definition_xrefs":["GOC:vk","ISBN:0198506732","PMID:9182671","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"desmosome organization","termid":"GO:0002934"},{"relation_name":"is_a","term_name":"cell-cell junction disassembly","termid":"GO:0150147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"desmosome disassembly","synonyms":[{"name":"desmosome dissociation","type":"exact"}],"termid":"GO:0035921"}


id: MONDO:0010349
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ovarian failure in which the cause of the disease is a mutation in the BMP15 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"46 XX gonadal dysgenesis","termid":"MONDO:0009299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"ovarian dysgenesis 2","secondary_identifiers":["OMIM:300510","DOID:0080861","MEDGEN:336903","GARD:18040","UMLS:C1845294","DOID:0080494","MESH:C564499"],"synonyms":[{"name":"BMP15 primary ovarian failure","type":"exact"},{"name":"ODG2","type":"related"},{"name":"ovarian dysgenesis 2","type":"exact"},{"name":"ovarian dysgenesis type 2","type":"exact"},{"name":"ovarian dysgenesis, hypergonadotropic, X-linked","type":"related"},{"name":"ovarian failure, hypergonadotropic, due to ovarian dysgenesis","type":"related"},{"name":"premature ovarian failure 4","type":"related"},{"name":"primary ovarian failure caused by mutation in BMP15","type":"exact"}],"termid":"MONDO:0010349","xrefs":{"Monarch":{"xref_id":"0010349"}}}


id: PATO:0002484
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angular","termid":"PATO:0001977"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inverted-V shaped","synonyms":[{"name":"chevron shaped","type":"broad"}],"termid":"PATO:0002484"}


id: GO:0051899
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which membrane potential decreases with respect to its steady-state potential, usually from negative potential to a more positive potential. For example, the initial depolarization during the rising phase of an action potential is in the direction from the negative steady-state resting potential towards the positive membrane potential that will be the peak of the action potential.","definition_xrefs":["Wikipedia:Depolarization","GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"membrane depolarization","secondary_identifiers":["Reactome:R-HSA-112308"],"termid":"GO:0051899"}


id: PBO:0049323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTF2A1 antisense RNA 1","termid":"PBO:0049323"}


id: GO:1903945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hepatocyte apoptotic process.","definition_xrefs":["PMID:8649852","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hepatocyte apoptotic process","termid":"GO:1903943"},{"relation_name":"is_a","term_name":"positive regulation of epithelial cell apoptotic process","termid":"GO:1904037"},{"relation_name":"positively_regulates","term_name":"hepatocyte apoptotic process","termid":"GO:0097284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hepatocyte apoptotic process","synonyms":[{"name":"activation of hepatocyte apoptosis","type":"narrow"},{"name":"activation of hepatocyte apoptotic process","type":"narrow"},{"name":"positive regulation of hepatocyte apoptosis","type":"narrow"},{"name":"up regulation of hepatocyte apoptosis","type":"narrow"},{"name":"up regulation of hepatocyte apoptotic process","type":"exact"},{"name":"up-regulation of hepatocyte apoptosis","type":"narrow"},{"name":"up-regulation of hepatocyte apoptotic process","type":"exact"},{"name":"upregulation of hepatocyte apoptosis","type":"narrow"},{"name":"upregulation of hepatocyte apoptotic process","type":"exact"}],"termid":"GO:1903945"}


id: GO:0097130
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin D3 and cyclin-dependent kinase 4 (CDK4). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["GOC:so","PMID:15935619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cyclin D3-CDK4 complex","termid":"GO:0097130"}


id: PBO:0080511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tryptophanyl tRNA synthetase 2 pseudogene 1","termid":"PBO:0080511"}


id: MONDO:0007096
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amenorrhea-galactorrhea syndrome","secondary_identifiers":["MESH:C537072","ICD9:253.1","MEDGEN:78775","OMIM:104600","SCTID:64678009","UMLS:C0271556"],"synonyms":[{"name":"amenorrhea-galactorrhea syndrome","type":"exact"}],"termid":"MONDO:0007096","xrefs":{"Monarch":{"xref_id":"0007096"}}}


id: GO:0009764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of C4 photosynthesis, as it occurs in plants in which the enzyme decarboxylating C4 acids in the bundle sheath is phosphoenolpyruvate carboxykinase (PEPCK).","definition_xrefs":["PMID:11788762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C4 photosynthesis","termid":"GO:0009760"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"PEP carboxykinase C4 photosynthesis","termid":"GO:0009764"}


id: PBO:0040080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase B","termid":"PBO:0040080"}


id: GO:0002053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of mesenchymal cell proliferation","termid":"GO:0010464"},{"relation_name":"positively_regulates","term_name":"mesenchymal cell proliferation","termid":"GO:0010463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mesenchymal cell proliferation","synonyms":[{"name":"activation of mesenchymal cell proliferation","type":"narrow"},{"name":"stimulation of mesenchymal cell proliferation","type":"narrow"},{"name":"up regulation of mesenchymal cell proliferation","type":"exact"},{"name":"up-regulation of mesenchymal cell proliferation","type":"exact"},{"name":"upregulation of mesenchymal cell proliferation","type":"exact"}],"termid":"GO:0002053"}


id: PBO:0038896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor A2","termid":"PBO:0038896"}


id: PBO:0089824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras1 GEF Efc25","termid":"PBO:0089824"}


id: GO:1901982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to maltose.","definition_xrefs":["GOC:TermGenie","PMID:21566157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide binding","termid":"GO:0048030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"maltose binding","termid":"GO:1901982"}


id: MONDO:0020725
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Anemia due to a disorder that is persistent or long-standing in nature.","definition_xrefs":["NCIT:C35659"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anemia","termid":"MONDO:0002280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"anemia due to chronic disorder","secondary_identifiers":["MEDGEN:507442","UMLS:C0002873","ICD9:285.29","SCTID:234347009"],"synonyms":[{"name":"Secondary anaemia","type":"related"},{"name":"Secondary anemia","type":"related"},{"name":"anaemia due to Chronic Disorder","type":"related"},{"name":"anaemia of chronic disease","type":"exact"},{"name":"anaemia of chronic disorder","type":"related"},{"name":"anaemia of chronic illness","type":"exact"},{"name":"anaemia of chronic inflammation","type":"exact"},{"name":"anaemia of systemic disease","type":"related"},{"name":"anemia due to Chronic Disorder","type":"related"},{"name":"anemia due to chronic disorder","type":"exact"},{"name":"anemia of chronic disease","type":"exact"},{"name":"anemia of chronic disorder","type":"related"},{"name":"anemia of chronic illness","type":"exact"},{"name":"anemia of chronic inflammation","type":"exact"},{"name":"anemia of systemic disease","type":"related"}],"termid":"MONDO:0020725","xrefs":{"Monarch":{"xref_id":"0020725"}}}


id: SO:0000660
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000660 DNA_invertase_target_sequence (obsolete SO:0000660)","termid":"SO:0000660"}


id: PBO:0004784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase Gpd1","termid":"PBO:0004784"}


id: PBO:0039412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANAPC15 pseudogene 2","termid":"PBO:0039412"}


id: SO:0000419
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide.","definition_xrefs":["EBIBS:GAR","SO:cb"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"mature_protein_region_of_CDS","termid":"SO:0002249"},{"relation_name":"is_a","term_name":"polypeptide_region","termid":"SO:0000839"},{"relation_name":"part_of","term_name":"immature_peptide_region","termid":"SO:0001063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"mature_protein_region","secondary_identifiers":["BS:00149"],"synonyms":[{"name":"INSDC_feature:mat_peptide","type":"exact"},{"name":"chain","type":"related"},{"name":"mature peptide","type":"related"},{"name":"mature protein region","type":"exact"}],"termid":"SO:0000419"}


id: PBO:0034695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene characterisation status","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved_unknown","termid":"PBO:0034695"}


id: GO:0032937
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex formed by the association of sterol regulatory element binding protein (SREBP), SREBP-cleavage-activating protein (SCAP), and an Insig protein (Insig-1 or Insig-2) in the ER membrane.","definition_xrefs":["PMID:12923525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"endoplasmic reticulum protein-containing complex","termid":"GO:0140534"},{"relation_name":"part_of","term_name":"endoplasmic reticulum membrane","termid":"GO:0005789"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005789"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005789","GO:0005783","GO:0005737"],"is_obsolete":false,"name":"SREBP-SCAP-Insig complex","termid":"GO:0032937"}


id: MONDO:0001775
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"duodenal obstruction","termid":"MONDO:0002688"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"chronic duodenal ileus","secondary_identifiers":["ICD9:537.2","MEDGEN:510177","SCTID:52232007","icd11.foundation:379824638","DOID:13687","UMLS:C0156087"],"termid":"MONDO:0001775","xrefs":{"Monarch":{"xref_id":"0001775"}}}


id: PBO:0059105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MORN repeat containing 1","termid":"PBO:0059105"}


id: GO:0006428
data:
  {"annotated_genes":["SJAG_03545","SJAG_04285"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112084,115488],"is_not":false,"summary":null,"term":"GO:0006428"}]},"cv_name":"biological_process","definition":"The process of coupling isoleucine to isoleucyl-tRNA, catalyzed by isoleucyl-tRNA synthetase. The isoleucyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a isoleucine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.","definition_xrefs":["GOC:mcc","ISBN:0716730510"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA aminoacylation for protein translation","termid":"GO:0006418"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03545":null,"SJAG_04285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006399","GO:0010467","GO:0006520"],"is_obsolete":false,"name":"isoleucyl-tRNA aminoacylation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0006428","terms_by_termid":{"GO:0006428":null}}


id: PBO:0064575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"periostin","termid":"PBO:0064575"}


id: PBO:0074936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 103A","termid":"PBO:0074936"}


id: GO:1903315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of nitrogen cycle metabolic process.","definition_xrefs":["GOC:vw","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of nitrogen cycle metabolic process","termid":"GO:1903314"},{"relation_name":"negatively_regulates","term_name":"nitrogen cycle metabolic process","termid":"GO:0071941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0071941"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0071941"}],"interesting_parent_ids":["GO:0071941","GO:0008150"],"is_obsolete":false,"name":"negative regulation of nitrogen cycle metabolic process","synonyms":[{"name":"down regulation of nitrogen cycle metabolic process","type":"exact"},{"name":"down-regulation of nitrogen cycle metabolic process","type":"exact"},{"name":"downregulation of nitrogen cycle metabolic process","type":"exact"},{"name":"inhibition of nitrogen cycle metabolic process","type":"narrow"}],"termid":"GO:1903315"}


id: MONDO:0020738
data:
  {"annotated_genes":["SJAG_04003"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86265],"is_not":false,"summary":null,"term":"MONDO:0020738"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"multiple benign circumferential skin creases on limbs","termid":"MONDO:0007990"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04003":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"multiple benign circumferential skin creases on limbs 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0112242","MEDGEN:1631916","OMIM:156610","UMLS:C4551592"],"synonyms":[{"name":"CSCSC1","type":"related"},{"name":"skin creases, congenital symmetric circumferential, 1","type":"related"},{"name":"symmetric circumferential skin creases, congenital, 1","type":"exact"}],"termid":"MONDO:0020738","terms_by_termid":{"MONDO:0020738":null},"xrefs":{"Monarch":{"xref_id":"0020738"}}}


id: PBO:0091181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 1","termid":"PBO:0091181"}


id: GO:1905558
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mitotic nuclear envelope disassembly.","definition_xrefs":["GOC:TermGenie","PMID:18765790","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell cycle process","termid":"GO:0010948"},{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"is_a","term_name":"regulation of mitotic nuclear envelope disassembly","termid":"GO:1905557"},{"relation_name":"negatively_regulates","term_name":"mitotic nuclear membrane disassembly","termid":"GO:0007077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"negatively_regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of mitotic nuclear envelope disassembly","synonyms":[{"name":"down regulation of mitotic nuclear envelope breakdown","type":"exact"},{"name":"down regulation of mitotic nuclear envelope catabolism","type":"exact"},{"name":"down regulation of mitotic nuclear envelope degradation","type":"exact"},{"name":"down regulation of mitotic nuclear envelope disassembly","type":"exact"},{"name":"down-regulation of mitotic nuclear envelope breakdown","type":"exact"},{"name":"down-regulation of mitotic nuclear envelope catabolism","type":"exact"},{"name":"down-regulation of mitotic nuclear envelope degradation","type":"exact"},{"name":"down-regulation of mitotic nuclear envelope disassembly","type":"exact"},{"name":"downregulation of mitotic nuclear envelope breakdown","type":"exact"},{"name":"downregulation of mitotic nuclear envelope catabolism","type":"exact"},{"name":"downregulation of mitotic nuclear envelope degradation","type":"exact"},{"name":"downregulation of mitotic nuclear envelope disassembly","type":"exact"},{"name":"inhibition of mitotic nuclear envelope breakdown","type":"narrow"},{"name":"inhibition of mitotic nuclear envelope catabolism","type":"narrow"},{"name":"inhibition of mitotic nuclear envelope degradation","type":"narrow"},{"name":"inhibition of mitotic nuclear envelope disassembly","type":"narrow"},{"name":"negative regulation of mitotic nuclear envelope breakdown","type":"exact"},{"name":"negative regulation of mitotic nuclear envelope catabolism","type":"exact"},{"name":"negative regulation of mitotic nuclear envelope degradation","type":"exact"}],"termid":"GO:1905558"}


id: GO:0030369
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with ICAM-3, intercellular adhesion molecule 3, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. ICAM-3, or CD50, are constitutively expressed on monocytes, granulocytes and lymphocytes; on physiological stimulation, they become transiently phosphorylated on serine residues.","definition_xrefs":["GOC:ai","PMID:7515813","ISBN:0198506732","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"ICAM-3 receptor activity","termid":"GO:0030369"}


id: PBO:0052710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 2","termid":"PBO:0052710"}


id: PBO:0051553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 9 receptor pseudogene 3","termid":"PBO:0051553"}


id: GO:2001024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of response to drug.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of response to drug","termid":"GO:2001023"},{"relation_name":"negatively_regulates","term_name":"response to xenobiotic stimulus","termid":"GO:0009410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of response to drug","synonyms":[{"name":"negative regulation of drug resistance","type":"related"},{"name":"negative regulation of drug susceptibility/resistance","type":"related"}],"termid":"GO:2001024"}


id: PBO:0050525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox D13","termid":"PBO:0050525"}


id: GO:0072409
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about a biological process or quality is received and converted into a molecular signal, contributing to a meiotic cell cycle checkpoint.","definition_xrefs":["GOC:mah","GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of stimulus involved in meiotic cell cycle checkpoint (obsolete GO:0072409)","synonyms":[{"name":"meiotic cell cycle checkpoint sensor mechanism","type":"related"},{"name":"meiotic cell cycle checkpoint sensor process","type":"related"},{"name":"sensing involved in meiotic cell cycle checkpoint","type":"related"}],"termid":"GO:0072409"}


id: GO:1903994
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of protein stabilization.","definition_xrefs":["PMID:18573880","GOC:TermGenie","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of protein stabilization (obsolete GO:1903994)","synonyms":[{"name":"activation of protein sequestering","type":"related"},{"name":"activation of protein stabilization","type":"narrow"},{"name":"activation of protein stabilization activity","type":"related"},{"name":"positive regulation of lysosomal protein stabilization","type":"narrow"},{"name":"activation of lysosomal protein stabilization","type":"narrow"},{"name":"activation of positive regulation of protein stability","type":"narrow"},{"name":"positive regulation of positive regulation of protein stability","type":"exact"},{"name":"positive regulation of protein sequestering","type":"related"},{"name":"positive regulation of protein stabilization","type":"exact"},{"name":"positive regulation of protein stabilization activity","type":"related"},{"name":"up regulation of lysosomal protein stabilization","type":"narrow"},{"name":"up regulation of positive regulation of protein stability","type":"exact"},{"name":"up regulation of protein sequestering","type":"related"},{"name":"up regulation of protein stabilization","type":"exact"},{"name":"up regulation of protein stabilization activity","type":"related"},{"name":"up-regulation of lysosomal protein stabilization","type":"narrow"},{"name":"up-regulation of positive regulation of protein stability","type":"exact"},{"name":"up-regulation of protein sequestering","type":"related"},{"name":"up-regulation of protein stabilization","type":"exact"},{"name":"up-regulation of protein stabilization activity","type":"related"},{"name":"upregulation of lysosomal protein stabilization","type":"narrow"},{"name":"upregulation of positive regulation of protein stability","type":"exact"},{"name":"upregulation of protein sequestering","type":"related"},{"name":"upregulation of protein stabilization","type":"exact"},{"name":"upregulation of protein stabilization activity","type":"related"}],"termid":"GO:1903994"}


id: PBO:0016985
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"co-expression of nus1 and rer2 functionally complements a triple deletion of NUS1, RER2 and SRT1 in S. cerevisiae","termid":"PBO:0016985"}


id: GO:0043254
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id: PBO:0091647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane amino acid transmembrane transporter Aat1","termid":"PBO:0091647"}


id: GO:0075170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont protein kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of protein kinase-mediated signal transduction in response to host (obsolete GO:0075170)","synonyms":[{"name":"negative regulation of symbiont protein kinase-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075170"}


id: GO:0006398
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any mRNA 3'-end processing that involves the binding to and cleavage of a stem-loop structure. For example, histone mRNAs contain a highly conserved stem-loop sequence at the 3' end of the mRNA with a 6 base pairs (bp) stem and a 4-nt loop. The mRNA is cleaved between these two elements, after the fourth or fifth nucleotide, which is typically an adenosine.","definition_xrefs":["PMID:17998288","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone mRNA metabolic process","termid":"GO:0008334"},{"relation_name":"is_a","term_name":"mRNA 3'-end processing","termid":"GO:0031124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0016071"],"is_obsolete":false,"name":"mRNA 3'-end processing by stem-loop binding and cleavage","secondary_identifiers":["Reactome:R-HSA-77588"],"synonyms":[{"name":"histone mRNA 3' end processing","type":"narrow"}],"termid":"GO:0006398"}


id: GO:0060221
data:
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id: PBO:0058735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6860","termid":"PBO:0058735"}


id: PBO:0039694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apelin receptor early endogenous ligand","termid":"PBO:0039694"}


id: PBO:0040309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit alpha pseudogene 1","termid":"PBO:0040309"}


id: FYPO:0003335
data:
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id: PBO:0038988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adrenoceptor beta 2","termid":"PBO:0038988"}


id: GO:0009891
data:
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id: GO:0009431
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id: GO:0097738
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which, in some fungal species, hyphae grow as a network of invasive thread-like filaments formed from chains of attached cells within a solid or semi-solid substrate.","definition_xrefs":["GOC:di","PMID:10021365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"asexual reproduction","termid":"GO:0019954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"substrate mycelium formation","termid":"GO:0097738"}


id: PBO:0062842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligosaccharyltransferase complex subunit pseudogene 8","termid":"PBO:0062842"}


id: PBO:0040731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL6 corepressor","termid":"PBO:0040731"}


id: PBO:0043610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COMM domain containing 3","termid":"PBO:0043610"}


id: PBO:0043005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase, acidic pseudogene 3","termid":"PBO:0043005"}


id: MONDO:0021201
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory process affecting the skin, caused by bacteria, viruses, parasites, or fungi. Examples of bacterial infection include carbuncles, furuncles, impetigo, erysipelas, and abscesses. Examples of viral infection include shingles, warts, molluscum contagiosum, and pityriasis rosea. Examples of parasitic infection include scabies and lice. Examples of fungal infection include athlete's foot, yeast infection, and ringworm.","definition_xrefs":["NCIT:C35025"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatitis","termid":"MONDO:0002406"},{"relation_name":"is_a","term_name":"skin disorder caused by infection","termid":"MONDO:0024294"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"skin infection","secondary_identifiers":["MEDGEN:52365","SCTID:19824006","UMLS:C0037278"],"synonyms":[{"name":"skin infection","type":"exact"}],"termid":"MONDO:0021201","xrefs":{"Monarch":{"xref_id":"0021201"}}}


id: MONDO:0018298
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic chronic skeletal disorder characterized by peripheral osteolysis (especially carpal and tarsal bones), interphalangeal joint erosions, subcutaneous fibrocollagenous nodules, facial dysmorphism, and a wide range of associated manifestations.","definition_xrefs":["Orphanet:371428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary osteolysis","termid":"MONDO:0019707"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multicentric osteolysis-nodulosis-arthropathy spectrum","secondary_identifiers":["SCTID:716868003","UMLS:C1850155","GARD:17610","MEDGEN:342428"],"synonyms":[{"name":"MONA spectrum","type":"exact"}],"termid":"MONDO:0018298","xrefs":{"Monarch":{"xref_id":"0018298"}}}


id: GO:0019300
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of rhamnose, the hexose 6-deoxy-L-mannose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhamnose metabolic process","termid":"GO:0019299"},{"relation_name":"is_a","term_name":"hexose biosynthetic process","termid":"GO:0019319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"rhamnose biosynthetic process","synonyms":[{"name":"rhamnose anabolism","type":"exact"},{"name":"rhamnose biosynthesis","type":"exact"},{"name":"rhamnose formation","type":"exact"},{"name":"rhamnose synthesis","type":"exact"}],"termid":"GO:0019300"}


id: PBO:0075511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal peptidase complex subunit 2 pseudogene 2","termid":"PBO:0075511"}


id: PBO:0043709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX6A1 pseudogene 6","termid":"PBO:0043709"}


id: MONDO:0020858
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  {"annotated_genes":["SJAG_03114"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85882],"is_not":false,"summary":null,"term":"MONDO:0020858"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex deficiency","termid":"MONDO:0000066"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03114":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 5 (ATP synthase) deficiency nuclear type 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:618120","GARD:18670","UMLS:C4748269","MEDGEN:1648429","DOID:0070463"],"synonyms":[{"name":"MC5DN5","type":"exact"},{"name":"MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, NUCLEAR TYPE 5","type":"exact"},{"name":"Mitochondrial Complex 5 (ATP Synthase) Deficiency, ATP5F1D Type","type":"exact"},{"name":"mitochondrial complex v (atp synthase) deficiency","type":"exact"}],"termid":"MONDO:0020858","terms_by_termid":{"MONDO:0020858":null},"xrefs":{"Monarch":{"xref_id":"0020858"}}}


id: PBO:0076789
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tectorin alpha","termid":"PBO:0076789"}


id: MONDO:0017109
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"isolated cerebellar vermis agenesis","termid":"MONDO:0017107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"}],"interesting_parent_ids":["MONDO:0020022"],"is_obsolete":false,"name":"isolated partial cerebellar vermis agenesis","secondary_identifiers":["Orphanet:269209","UMLS:C5680780","GARD:20992","MEDGEN:1842645"],"termid":"MONDO:0017109","xrefs":{"Monarch":{"xref_id":"0017109"}}}


id: GO:0010922
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate or frequency of phosphatase activity. Phosphatases catalyze the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphatase activity","termid":"GO:0010921"},{"relation_name":"is_a","term_name":"positive regulation of dephosphorylation","termid":"GO:0035306"},{"relation_name":"is_a","term_name":"positive regulation of hydrolase activity","termid":"GO:0051345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of phosphatase activity","termid":"GO:0010922"}


id: GO:0097720
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  {"annotated_genes":["SJAG_03879","SJAG_04668","SJAG_03631","SJAG_02858","SJAG_03793","SJAG_03799"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91907,97608,112798,118007],"is_not":false,"summary":null,"term":"GO:0097720"},{"annotations":[100487,115573],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0106057"}]},"cv_name":"biological_process","definition":"Any intracellular signal transduction in which the signal is passed on within the cell by activation of a transcription factor as a consequence of dephosphorylation by Ca(2+)-activated calcineurin. The process begins with calcium-dependent activation of the phosphatase calcineurin. Calcineurin is a calcium- and calmodulin-dependent serine/threonine protein phosphatase with a conserved function in eukaryotic species from yeast to humans. In yeast and fungi, calcineurin regulates stress signaling and cell cycle, and sporulation and virulence in pathogenic fungi. In metazoans, calcineurin is involved in cell commitment, organogenesis and organ development and immune function of T-lymphocytes. By a conserved mechanism, calcineurin phosphatase activates fungal Crz1 and mammalian NFATc by dephosphorylation and translocation of these transcription factors to the nucleus to regulate gene expression.","definition_xrefs":["PMID:25655284","GOC:di","PMID:25878052","PMID:26851544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium-mediated signaling","termid":"GO:0019722"}],"gene_count":6,"genes_by_uniquename":{"SJAG_02858":null,"SJAG_03631":null,"SJAG_03793":null,"SJAG_03799":null,"SJAG_03879":null,"SJAG_04668":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"calcineurin-mediated signaling","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"calcineurin signaling","type":"related"},{"name":"calcineurin-mediated signalling","type":"exact"}],"termid":"GO:0097720","terms_by_termid":{"GO:0097720":null,"GO:0106057":null}}


id: PBO:0061036
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIP7 pseudogene 2","termid":"PBO:0061036"}


id: GO:1900031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of transcription from RNA polymerase II promoter that is involved in calcium-mediated signaling.","definition_xrefs":["PMID:9407035","PMID:9407036","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling (obsolete GO:1900031)","synonyms":[{"name":"global transcription regulation from Pol II promoter of calcium ion signaling","type":"related"},{"name":"global transcription regulation from Pol II promoter of calcium signaling","type":"related"},{"name":"global transcription regulation from Pol II promoter of calcium signalling","type":"related"},{"name":"global transcription regulation from Pol II promoter of calcium-mediated signaling","type":"related"},{"name":"global transcription regulation from Pol II promoter of calcium-mediated signalling","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter of calcium ion signaling","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter of calcium signaling","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter of calcium signalling","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"related"},{"name":"regulation of global transcription from Pol II promoter of calcium ion signaling","type":"related"},{"name":"regulation of global transcription from Pol II promoter of calcium signaling","type":"related"},{"name":"regulation of global transcription from Pol II promoter of calcium signalling","type":"related"},{"name":"regulation of global transcription from Pol II promoter of calcium-mediated signaling","type":"related"},{"name":"regulation of global transcription from Pol II promoter of calcium-mediated signalling","type":"related"},{"name":"regulation of transcription from Pol II promoter of calcium ion signaling","type":"exact"},{"name":"regulation of transcription from Pol II promoter of calcium signaling","type":"exact"},{"name":"regulation of transcription from Pol II promoter of calcium signalling","type":"exact"},{"name":"regulation of transcription from Pol II promoter of calcium-mediated signaling","type":"related"},{"name":"regulation of transcription from Pol II promoter of calcium-mediated signalling","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter of calcium ion signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter of calcium signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter of calcium signalling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global of calcium ion signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global of calcium signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global of calcium signalling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global of calcium-mediated signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global of calcium-mediated signalling","type":"related"}],"termid":"GO:1900031"}


id: PR:Q10479
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01860"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.07","secondary_identifiers":["UniProtKB:Q10479"],"synonyms":[{"name":"Dol-P-Glc:Glc(1)Man(9)GlcNAc(2)-PP-dolichyl alpha-1,3-glucosyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ALG8","type":"exact"},{"name":"asparagine-linked glycosylation protein 8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl glucosyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10479"}


id: PBO:0071863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 1","termid":"PBO:0071863"}


id: PBO:0085842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to the nucleus; protein abundance increases in response to DNA replication stress","termid":"PBO:0085842"}


id: GO:0031037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disassembly of a bipolar filament composed of myosin II molecules.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin filament disassembly","termid":"GO:0031035"},{"relation_name":"is_a","term_name":"myosin II filament organization","termid":"GO:0031038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0030036","GO:0007010"],"is_obsolete":false,"name":"myosin II filament disassembly","synonyms":[{"name":"myosin II depolymerization","type":"related"}],"termid":"GO:0031037"}


id: PBO:0001375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CK2 subfamily","termid":"PBO:0001375"}


id: GO:0007394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in shape of cells at the dorsal-most (leading) edge of the epidermis from being polygonal to being elongated in the dorsal/ventral axis.","definition_xrefs":["PMID:12147138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unidimensional cell growth","termid":"GO:0009826"},{"relation_name":"is_a","term_name":"regulation of embryonic cell shape","termid":"GO:0016476"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"initiation of dorsal closure","termid":"GO:0007392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal closure, elongation of leading edge cells","termid":"GO:0007394"}


id: PBO:0038532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 6, acylglycerol lipase","termid":"PBO:0038532"}


id: GO:0090379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall of seed trichomes after cell expansion is complete.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant-type secondary cell wall biogenesis","termid":"GO:0009834"},{"relation_name":"part_of","term_name":"seed trichome differentiation","termid":"GO:0090376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"secondary cell wall biogenesis involved in seed trichome differentiation","synonyms":[{"name":"secondary cell wall biosynthesis involved in seed trichome differentiation","type":"exact"},{"name":"seed trichome secondary wall biosynthesis","type":"related"}],"termid":"GO:0090379"}


id: SO:0001718
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_3_acetylation_site","termid":"SO:0001973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K18_acetylation_site","synonyms":[{"name":"H3K18 acetylation site","type":"exact"},{"name":"H3K18ac","type":"exact"}],"termid":"SO:0001718"}


id: GO:0014877
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle inactivity stimulus. This process occurs as part of the regulation of muscle adaptation.","definition_xrefs":["GOC:mtg_muscle","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to muscle inactivity","termid":"GO:0014870"},{"relation_name":"is_a","term_name":"response to stimulus involved in regulation of muscle adaptation","termid":"GO:0014874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to muscle inactivity involved in regulation of muscle adaptation","termid":"GO:0014877"}


id: GO:0016074
data:
  {"annotated_genes":["SJAG_00854","SJAG_03984","SJAG_01176","SJAG_03234","SJAG_03179","SJAG_00943","SJAG_03745","SJAG_04321","SJAG_02553","SJAG_01369","SJAG_04527","SJAG_04754","SJAG_06613","SJAG_04153","SJAG_01191","SJAG_00752","SJAG_01521","SJAG_04942","SJAG_04768","SJAG_03112","SJAG_02350","SJAG_02382"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117111],"is_not":false,"summary":null,"term":"GO:0016074"},{"annotations":[109656,107555],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000494"},{"annotations":[101657],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106410"},{"annotations":[94854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000495"},{"annotations":[114752,104250,90599,112931],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034965"},{"annotations":[112708,91759],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071036"},{"annotations":[96754,92584,95423,101574,105938,114890,91761],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071051"},{"annotations":[92334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031126"},{"annotations":[87893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016077"},{"annotations":[87017,90309],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043144"},{"annotations":[102509],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034247"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA metabolic process","termid":"GO:0016070"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00752":null,"SJAG_00854":null,"SJAG_00943":null,"SJAG_01176":null,"SJAG_01191":null,"SJAG_01369":null,"SJAG_01521":null,"SJAG_02350":null,"SJAG_02382":null,"SJAG_02553":null,"SJAG_03112":null,"SJAG_03179":null,"SJAG_03234":null,"SJAG_03745":null,"SJAG_03984":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04527":null,"SJAG_04754":null,"SJAG_04768":null,"SJAG_04942":null,"SJAG_06613":null},"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sno(s)RNA metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"box C/D sRNA metabolic process","type":"narrow"},{"name":"snoRNA metabolism","type":"narrow"}],"termid":"GO:0016074","terms_by_termid":{"GO:0000494":null,"GO:0000495":null,"GO:0016074":null,"GO:0016077":null,"GO:0031126":null,"GO:0034247":null,"GO:0034965":null,"GO:0043144":null,"GO:0071036":null,"GO:0071051":null,"GO:0106410":null}}


id: GO:2000867
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of estrone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of steroid hormone secretion","termid":"GO:2000831"},{"relation_name":"regulates","term_name":"estrone secretion","termid":"GO:0035943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0023052"],"is_obsolete":false,"name":"regulation of estrone secretion","synonyms":[{"name":"regulation of 3-hydroxy-1,3,5(10)-estratrien-17-one secretion","type":"exact"},{"name":"regulation of folliculin secretion","type":"exact"}],"termid":"GO:2000867"}


id: PBO:0089053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tricalbin, C2 domain protein (phospholipid binding) ER-plasma membrane tethering protein Tcb3","termid":"PBO:0089053"}


id: PBO:0035935
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_cytoplasmic_microtubule_during_mitotic_interphase","termid":"PBO:0035935"}


id: PR:Q9P7R0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- aro1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7R0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentafunctional AROM polypeptide (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1834.02","synonyms":[{"name":"Spom972h-aro1","type":"exact"}],"termid":"PR:Q9P7R0"}


id: GO:0140794
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + histone 3 L-arginyl = histone 3 L-citrullyl + NH4+, resulting in histone citrullination.","definition_xrefs":["PMID:15339660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-arginine deiminase activity","termid":"GO:0004668"},{"relation_name":"is_a","term_name":"histone modifying activity","termid":"GO:0140993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0140096","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"histone arginine deiminase activity","synonyms":[{"name":"histone citrullination","type":"related"},{"name":"histone-arginine deiminase activity","type":"exact"}],"termid":"GO:0140794"}


id: GO:0102903
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate = gamma-terpinene + diphosphoric acid.","definition_xrefs":["GOC:pz","RHEA:32559"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"gamma-terpinene synthase activity","secondary_identifiers":["EC:4.2.3.114","MetaCyc:RXN-8547"],"termid":"GO:0102903"}


id: FYECO:0000238
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","direct_ancestors":[{"relation_name":"is_a","term_name":"fission yeast phenotype condition","termid":"FYECO:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grouping condition combinations","termid":"FYECO:0000238"}


id: SO:0001724
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is tri-methylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H3K36_methylation_site","termid":"SO:0001733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K36_trimethylation_site","synonyms":[{"name":"H3K36 tri-methylation site","type":"exact"},{"name":"H3K36Me3","type":"related"}],"termid":"SO:0001724"}


id: PBO:0058727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6855","termid":"PBO:0058727"}


id: CHEBI:168396
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mycophenolic acid","termid":"CHEBI:168396"}


id: RO:0002254
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x has developmental contribution from y iff x has some part z such that z develops from y","direct_ancestors":[{"relation_name":"is_a","term_name":"developmentally_preceded_by","termid":"RO:0002258"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_developmental_contribution_from","termid":"RO:0002254"}


id: PBO:0085868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; has weak similarity to E. coli GTP-binding protein gtp1; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0085868"}


id: MONDO:0023193
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Friedman Goodman syndrome","termid":"MONDO:0023193","xrefs":{"Monarch":{"xref_id":"0023193"}}}


id: PBO:0073843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 8 member A2","termid":"PBO:0073843"}


id: GO:0047399
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + 6-(D-glucose-1-phospho)-D-mannosylglycoprotein = D-mannosylglycoprotein + D-glucose-alpha-1-phosphate.","definition_xrefs":["EC:3.1.4.51","MetaCyc:3.1.4.51-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0140096","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"glucose-1-phospho-D-mannosylglycoprotein phosphodiesterase activity","secondary_identifiers":["RHEA:18045"],"synonyms":[{"name":"6-(D-glucose-1-phospho)-D-mannosylglycoprotein glucose-1-phosphohydrolase activity","type":"related"},{"name":"alpha-glucose-1-phosphate phosphodiesterase activity","type":"related"}],"termid":"GO:0047399"}


id: MONDO:0015130
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. An instance of chronic primary adrenal insufficiency that is acquired during the lifetime of the individual.","definition_xrefs":["MONDO:patterns/acquired"],"gene_count":0,"genotype_count":0,"name":"obsolete acquired chronic primary adrenal insufficiency (obsolete MONDO:0015130)","secondary_identifiers":["Orphanet:101963"],"synonyms":[{"name":"acquired chronic primary adrenal insufficiency","type":"exact"}],"termid":"MONDO:0015130","xrefs":{"Monarch":{"xref_id":"0015130"}}}


id: GO:0070734
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of one or more methyl groups to lysine at position 27 of the histone.","definition_xrefs":["GOC:mah","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K27 methylation (obsolete GO:0070734)","synonyms":[{"name":"histone H3 K27 methylation","type":"exact"},{"name":"histone H3K27me","type":"exact"},{"name":"histone lysine H3 K27 methylation","type":"exact"}],"termid":"GO:0070734"}


id: PBO:0069756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1039, pseudogene","termid":"PBO:0069756"}


id: GO:2001267
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of cysteine-type endopeptidase activity involved in apoptotic signaling pathway.","definition_xrefs":["GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway (obsolete GO:2001267)","synonyms":[{"name":"regulation of cysteine-type endopeptidase activity involved in apoptotic signalling pathway","type":"exact"},{"name":"regulation of initiator caspase activity","type":"narrow"}],"termid":"GO:2001267"}


id: PBO:0004024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO deconjugating enzyme Ulp1","termid":"PBO:0004024"}


id: GO:0097416
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cytoplasmic inclusion found in neurons. It consists of filaments and granular materials, exhibits a dense core with a rough peripheral halo and lacks a limiting membrane. The filaments of these inclusions are composed of approximately 15-25 nm granule-coated fibrils in association with normal 10-nm neurofilaments.","definition_xrefs":["NIF_Subcellular:nlx_subcell_20090105","PMID:18026741"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inclusion body","termid":"GO:0016234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"Lewy body-like hyaline inclusion","synonyms":[{"name":"LBHI","type":"exact"}],"termid":"GO:0097416"}


id: MOD:01998
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a butanoyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-butanoylated residue","termid":"MOD:01997"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amino butanoylated residue","synonyms":[{"name":"N2ButRes","type":"exact"}],"termid":"MOD:01998"}


id: GO:0080066
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-methylthiopropyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 3-methylthiopropyl-glucosinolate + adenosine 3',5'-bisphosphate.","definition_xrefs":["PMID:19077143"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-methylthiopropyl-desulfoglucosinolate sulfotransferase activity (obsolete GO:0080066)","termid":"GO:0080066"}


id: MONDO:0013245
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"intestinal disorder","termid":"MONDO:0005020"},{"relation_name":"excluded_subClassOf","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"excluded_subClassOf","term_name":"obsolete intractable diarrhea of infancy (obsolete MONDO:0019126)","termid":"MONDO:0019126"},{"relation_name":"excluded_subClassOf","term_name":"autoimmune enteropathy","termid":"MONDO:0019787"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndromic multisystem autoimmune disease due to ITCH deficiency","secondary_identifiers":["icd11.foundation:1970749000","OMIM:613385","MEDGEN:461999","UMLS:C3150649","GARD:10775","Orphanet:228426","NANDO:2200739"],"synonyms":[{"name":"ADMFD","type":"related"},{"name":"ITCH E3 ubiquitin ligase deficiency","type":"related"},{"name":"autoimmune disease, multisystem, with facial dysmorphism","type":"related"},{"name":"autoimmune disease, syndromic multisystem","type":"related"},{"name":"syndromic multisystem autoimmune disease","type":"related"},{"name":"syndromic multisystem autoimmune disease due to ITCH deficiency","type":"exact"}],"termid":"MONDO:0013245","xrefs":{"Monarch":{"xref_id":"0013245"}}}


id: GO:0030264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The breakdown of the nucleus into small membrane-bounded compartments, or blebs, each of which contain compacted DNA.","definition_xrefs":["GOC:dph","GOC:tb","ISBN:0721639976","GOC:mah","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear membrane organization","termid":"GO:0071763"},{"relation_name":"part_of","term_name":"apoptotic nuclear changes","termid":"GO:0030262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"nuclear fragmentation involved in apoptotic nuclear change","synonyms":[{"name":"apoptotic nuclear fragmentation","type":"exact"},{"name":"nuclear fragmentation during apoptosis","type":"related"},{"name":"nucleus fragmentation","type":"exact"}],"termid":"GO:0030264"}


id: PATO:0002266
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape that inheres in a 3 dimensional entity.","definition_xrefs":["PATOC:OREGON"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-D shape","termid":"PATO:0002266"}


id: MOD:01381
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-palmitoleyl-L-serine.","definition_xrefs":["RESID:AA0455","OMSSA:186","PubMed:17141155"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-palmitoleylated residue","termid":"MOD:01768"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"O-palmitoleyl-L-serine","synonyms":[{"name":"(2S)-2-amino-3-((9Z)-9-hexadecenoyloxy)propanoic acid","type":"exact"},{"name":"L-serine cis-9-hexadecenoate ester","type":"exact"},{"name":"LIPID O-palmitoleyl serine","type":"exact"},{"name":"O-palmitoleyl-L-serine","type":"exact"},{"name":"O3-palmitoleyl-serine","type":"exact"},{"name":"mod186","type":"exact"}],"termid":"MOD:01381"}


id: PBO:0039196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldo-keto reductase family 1 member A1","termid":"PBO:0039196"}


id: PBO:0051483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable (VII)-41-1 (pseudogene)","termid":"PBO:0051483"}


id: PBO:0026729
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_regulation_of_translation_in_response_to_stress_during_vegetative_growth","termid":"PBO:0026729"}


id: PBO:0065644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase non-receptor type 22","termid":"PBO:0065644"}


id: PBO:0078861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRPC6 pseudogene 9","termid":"PBO:0078861"}


id: GO:0032019
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A prominent mass in the cytoplasm of previtellogenic oocytes. The cloud contains both mitochondria and electron-dense granulofibrillar material (GFM) and is the source of germinal granule material.","definition_xrefs":["PMID:6541166"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membraneless organelle","termid":"GO:0043232"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"mitochondrial cloud","synonyms":[{"name":"Balbiani body","type":"exact"},{"name":"mitochondrial aggregate","type":"related"}],"termid":"GO:0032019"}


id: MOD:01874
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alanine residue to N-carboxy-L-valine.","definition_xrefs":["PubMed:4647257","PubMed:18688235","PubMed:4593770","PubMed:8312270"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-valine residue","termid":"MOD:00920"},{"relation_name":"is_a","term_name":"carboxylated residue","termid":"MOD:01152"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-carboxy-L-valine","synonyms":[{"name":"(S)-2-carboxyamino-propanoic acid","type":"exact"},{"name":"2-carbamic-propanoic acid","type":"exact"},{"name":"N-carboxymethionine","type":"exact"}],"termid":"MOD:01874"}


id: MONDO:0016170
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Chronic form of polyradiculoneuropathy.","definition_xrefs":["MONDO:patterns/chronic"],"gene_count":0,"genotype_count":0,"name":"obsolete chronic polyradiculoneuropathy (obsolete MONDO:0016170)","secondary_identifiers":["Orphanet:208978"],"synonyms":[{"name":"polyradiculoneuropathy, chronic","type":"exact"}],"termid":"MONDO:0016170","xrefs":{"Monarch":{"xref_id":"0016170"}}}


id: PBO:0067751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 50","termid":"PBO:0067751"}


id: PBO:0083670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endoplasmic reticulum protein of unknown function; physically interacts with Hsp82p; YPL264C is not an essential gene","termid":"PBO:0083670"}


id: FYPO:0002922
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which ubiquitination of lysine at position 119 of histone H2B does not occur. Lysine 119 corresponds to the conserved C-terminal lysine of H2B.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein ubiquitination during vegetative growth","termid":"FYPO:0000912"},{"relation_name":"is_a","term_name":"abnormal histone H2B-K119 ubiquitination during vegetative growth","termid":"FYPO:0005607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished histone H2B-K119 ubiquitination during vegetative growth","synonyms":[{"name":"abolished histone H2B conserved C-terminal lysine ubiquitination during vegetative growth","type":"exact"},{"name":"abolished histone H2B-K119 ubiquitination during mitotic cell cycle","type":"related"},{"name":"histone H2B-K119 ubiquitination abolished during vegetative growth","type":"exact"},{"name":"histone H2B-K119 ubiquitination absent during vegetative growth","type":"exact"}],"termid":"FYPO:0002922"}


id: GO:0106089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cell adhesion involved in sprouting angiogenesis.","definition_xrefs":["GOC:BHF_miRNA","GOC:BHF","PMID:24177325","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell adhesion","termid":"GO:0007162"},{"relation_name":"is_a","term_name":"regulation of cell adhesion involved in sprouting angiogenesis","termid":"GO:0106088"},{"relation_name":"is_a","term_name":"negative regulation of sprouting angiogenesis","termid":"GO:1903671"},{"relation_name":"negatively_regulates","term_name":"cell adhesion involved in sprouting angiogenesis","termid":"GO:0120078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell adhesion involved in sprouting angiogenesis","termid":"GO:0106089"}


id: MONDO:0017194
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Blount disease is characterized by disturbed growth of the inner portion of the upper tibial extremity, progressively leading to bowlegged deformity with bone angulation just below the knee (tibia varus). In 60% of cases, the condition affects both legs.","definition_xrefs":["Orphanet:2768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"},{"relation_name":"is_a","term_name":"bent bone dysplasia","termid":"MONDO:0019698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Blount disease","secondary_identifiers":["GARD:916","ICD9:736.89","icd11.foundation:138830223","NCIT:C118460","MESH:C536237","SCTID:79353000","MedDRA:10072255","DOID:14798","MEDGEN:104499","UMLS:C0175756"],"synonyms":[{"name":"Blount disease","type":"exact"},{"name":"Blount's disease","type":"exact"},{"name":"Blount-Barber syndrome","type":"related"},{"name":"Erlacher-Blount syndrome","type":"related"},{"name":"Osteochondrosis deformans tibiae","type":"exact"},{"name":"Osteochondrosis deformans tibiae, familial infantile type","type":"related"},{"name":"familial infantile type osteochondrosis deformans tibiae","type":"exact"},{"name":"infantile tibia vara","type":"exact"},{"name":"tibia vara","type":"related"},{"name":"tibia vara Blount","type":"exact"}],"termid":"MONDO:0017194","xrefs":{"Monarch":{"xref_id":"0017194"}}}


id: GO:0033879
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: 17-O-acetylajmaline + H2O = ajmaline + acetate, and 17-O-acetylnorajmaline + H2O = norajmaline + acetate.","definition_xrefs":["EC:3.1.1.80"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"acetylajmaline esterase activity","synonyms":[{"name":"17-O-acetylajmaline O-acetylhydrolase activity","type":"related"},{"name":"2beta(R)-17-O-acetylajmalan:acetylesterase activity","type":"related"},{"name":"AAE","type":"related"},{"name":"acetylajmalan esterase activity","type":"related"}],"termid":"GO:0033879"}


id: GO:0034250
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amides.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of amide metabolic process","termid":"GO:0034248"},{"relation_name":"positively_regulates","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of amide metabolic process","synonyms":[{"name":"positive regulation of amide metabolism","type":"exact"},{"name":"positive regulation of cellular amide metabolic process","type":"exact"}],"termid":"GO:0034250"}


id: PBO:0075389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sp3 transcription factor","termid":"PBO:0075389"}


id: GO:1901539
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ent-pimara-8(14),15-diene.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene metabolic process","termid":"GO:0042214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"ent-pimara-8(14),15-diene metabolic process","synonyms":[{"name":"ent-pimara-8(14),15-diene metabolism","type":"exact"}],"termid":"GO:1901539"}


id: PBO:0054881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2295","termid":"PBO:0054881"}


id: PBO:0061957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily A member 13 pseudogene","termid":"PBO:0061957"}


id: GO:0071749
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of two, three, or four monomeric IgA immunoglobulin complexes linked through both direct disulfide bonds and through disulfide binded monomers of J chain acting as a bridge. Each IgA monomer consists of two identical immunoglobulin heavy chains of an IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds. Dimeric IgA is sometimes complexed additionally with secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.","definition_xrefs":["GOC:add","ISBN:0781765196","PMID:16362985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"IgA immunoglobulin complex, circulating","termid":"GO:0071746"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005576","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"polymeric IgA immunoglobulin complex","synonyms":[{"name":"pIgA antibody","type":"exact"},{"name":"pIgA1 antibody","type":"narrow"},{"name":"polymeric IgA antibody","type":"exact"},{"name":"polymeric IgA1 antibody","type":"narrow"}],"termid":"GO:0071749"}


id: SO:0001609
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An elongation of a polypeptide sequence deriving from a sequence variant extending the CDS.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_sequence_variant","termid":"SO:0001603"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongated_polypeptide","synonyms":[{"name":"elongated polypeptide","type":"exact"}],"termid":"SO:0001609"}


id: PR:O14044
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An RNA-binding protein PNO1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01774","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-rRNA-processing protein pno1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2C4.11c","secondary_identifiers":["UniProtKB:O14044"],"synonyms":[{"name":"Spom972h-PNO1","type":"exact"},{"name":"ribosomal RNA-processing protein 28 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14044"}


id: PBO:0079185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis specific protein Y-linked 14, pseudogene","termid":"PBO:0079185"}


id: PBO:0047008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A11, pseudogene","termid":"PBO:0047008"}


id: PBO:0055182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2606","termid":"PBO:0055182"}


id: MONDO:0011159
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the COL11A2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0019497"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 13","secondary_identifiers":["DOID:0110545","GARD:18108","MEDGEN:400917","OMIM:601868","MESH:C566612","UMLS:C1866095"],"synonyms":[{"name":"COL11A2 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"DFNA13","type":"narrow"},{"name":"autosomal dominant deafness 13","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 13","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in COL11A2","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 13","type":"narrow"},{"name":"deafness, autosomal dominant 13","type":"narrow"},{"name":"deafness, autosomal dominant type 13","type":"narrow"}],"termid":"MONDO:0011159","xrefs":{"Monarch":{"xref_id":"0011159"}}}


id: GO:0062027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that starts or increases the rate, frequency or extent of SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, the chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome.","definition_xrefs":["PMID:28007894"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of proteasomal ubiquitin-dependent protein catabolic process","termid":"GO:0032436"},{"relation_name":"is_a","term_name":"regulation of SCF-dependent proteasomal ubiquitin-dependent protein catabolic process","termid":"GO:0062025"},{"relation_name":"positively_regulates","term_name":"SCF-dependent proteasomal ubiquitin-dependent protein catabolic process","termid":"GO:0031146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"positively_regulates","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"positive regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process","termid":"GO:0062027"}


id: FYPO:0001129
data:
  {"alleles_by_uniquename":{"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_03783:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03783","name":"vps24delta","uniquename":"SJAG_03783:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_03892:allele-2":{"allele_type":"amino_acid_mutation","description":"E233Q","gene_uniquename":"SJAG_03892","name":"Vps4-EQ","uniquename":"SJAG_03892:allele-2"},"SJAG_03892:allele-3":{"allele_type":"amino_acid_mutation","description":"I307T L327S","gene_uniquename":"SJAG_03892","name":"vps4-ts","uniquename":"SJAG_03892:allele-3"},"SJAG_04489:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04489","name":"did4delta","uniquename":"SJAG_04489:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[118714],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007771"}],"single_locus_phenotype":[{"annotations":[118715,118696,118700,118689,118690,118716,118718,118699,118713,118719,118717,118697,118720],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007771"},{"annotations":[118693],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007073"},{"annotations":[118692],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003657"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"},{"relation_name":"is_a","term_name":"abnormal protein localization to nucleus","termid":"FYPO:0002956"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01745":null,"SJAG_03783":null,"SJAG_03892":null,"SJAG_04489":null,"SJAG_05207":null},"genotype_count":9,"genotypes_by_uniquename":{"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild type"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},"did4delta":{"display_name":"did4delta","display_uniquename":"did4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04489:allele-1","expression":"Null"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"nur1delta":{"display_name":"nur1delta","display_uniquename":"nur1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]}]},"vps24delta":{"display_name":"vps24delta","display_uniquename":"vps24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03783:allele-1","expression":"Null"}]}]},"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"vps4-ts(I307T L327S 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growth","references_by_uniquename":{"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01050","SJAG_01745","SJAG_03783","SJAG_05207","SJAG_04489","SJAG_03892"],"single_locus_genotype_uniquenames":["vps4delta","lem2delta","vps24delta","vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","cmp7delta","nur1delta","did4delta"],"synonyms":[{"name":"abnormal protein localisation to nucleus during vegetative growth","type":"exact"},{"name":"abnormal protein localization to nucleus during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001129","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0003657":null,"FYPO:0007073":null,"FYPO:0007771":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: MONDO:1011332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mitochondrial disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-human animal disease","termid":"MONDO:0005583"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial disease, non-human animal","termid":"MONDO:1011332","xrefs":{"Monarch":{"xref_id":"1011332"}}}


id: MOD:00811
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"a protein modification that effectively forms a O3-mannosylthreonine","definition_xrefs":["RESID:AA0403","PubMed:391559"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosylated residue","termid":"MOD:00595"},{"relation_name":"is_a","term_name":"monohexosylated (Hex1)","termid":"MOD:00761"},{"relation_name":"is_a","term_name":"O-hexosylated threonine","termid":"MOD:01348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-mannosyl-L-threonine","synonyms":[{"name":"(2S,3R)-2-amino-3-(alpha-D-mannopyranosyloxy)butanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (Hex)","type":"exact"},{"name":"CARBOHYD O-linked (Man) threonine","type":"exact"},{"name":"O-glycosylthreonine","type":"exact"},{"name":"O-mannosyl-L-threonine","type":"exact"},{"name":"O3-mannosylthreonine","type":"exact"},{"name":"OManThr","type":"exact"}],"termid":"MOD:00811"}


id: PBO:0042866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP97 domain containing 1","termid":"PBO:0042866"}


id: PBO:0054985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2399","termid":"PBO:0054985"}


id: PBO:0000229
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tandem fusion protein","termid":"PBO:0000229"}


id: PBO:0090030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex, WD repeat protein Cft1","termid":"PBO:0090030"}


id: PBO:0029408
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_frequency_of_conjugation_with_h-_cells","termid":"PBO:0029408"}


id: GO:0070747
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with interleukin-35 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"interleukin-35 receptor activity","synonyms":[{"name":"IL-35 receptor activity","type":"exact"},{"name":"IL-35R","type":"exact"}],"termid":"GO:0070747"}


id: GO:0102047
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-acetate + glycine + ATP(4-) = H+ + indole-3-acetyl-glycine + AMP(2-) + diphosphoric acid.","definition_xrefs":["GOC:pz","PMID:15659623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"indole-3-acetyl-glycine synthetase activity","secondary_identifiers":["MetaCyc:RXN-10429"],"termid":"GO:0102047"}


id: GO:0019588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic chemical reactions and pathways resulting in the breakdown of glycerol, yielding energy in the form of ATP.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerol catabolic process","termid":"GO:0019563"},{"relation_name":"is_a","term_name":"non-glycolytic fermentation","termid":"GO:0019662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0006091","GO:0008150"],"is_obsolete":false,"name":"anaerobic glycerol catabolic process","synonyms":[{"name":"glycerol fermentation","type":"exact"}],"termid":"GO:0019588"}


id: PBO:0080532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASHC3 pseudogene 1","termid":"PBO:0080532"}


id: FYPO:0002097
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000661","FYPO:0000654","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein kinase activity during cellular response to hydroxyurea","synonyms":[{"name":"decreased protein kinase activity during cellular response to HU","type":"exact"},{"name":"reduced protein kinase activity during cellular response to HU","type":"exact"},{"name":"reduced protein kinase activity during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0002097"}


id: GO:0060612
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of adipose tissue over time, from its formation to the mature structure. Adipose tissue is specialized tissue that is used to store fat.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue development","termid":"GO:0061448"},{"relation_name":"part_of","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adipose tissue development","synonyms":[{"name":"adipogenesis","type":"related"}],"termid":"GO:0060612"}


id: PBO:0065058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline and arginine rich end leucine rich repeat protein","termid":"PBO:0065058"}


id: MONDO:0001127
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tendinitis that involves the tibialis.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tendinitis","termid":"MONDO:0004857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"tibialis tendinitis","secondary_identifiers":["SCTID:50127006","ICD9:726.72","MEDGEN:510515","UMLS:C0158321","DOID:10810"],"synonyms":[{"name":"tendinitis of tibialis","type":"exact"},{"name":"tibialis tendinitis","type":"exact"}],"termid":"MONDO:0001127","xrefs":{"Monarch":{"xref_id":"0001127"}}}


id: PBO:0034304
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-develops_into","termid":"PBO:0034304"}


id: PBO:0073161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC62 homolog, preprotein translocation factor","termid":"PBO:0073161"}


id: GO:0090671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which telomerase RNA (TERC) is transported to, or maintained in, a Cajal body.","definition_xrefs":["GOC:BHF_telomere","GOC:BHF","PMID:25467444","GOC:nc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA localization to Cajal body","termid":"GO:0090670"},{"relation_name":"is_a","term_name":"telomerase RNA localization","termid":"GO:0090672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"telomerase RNA localization to Cajal body","termid":"GO:0090671"}


id: GO:0021795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of cells from one site to another in the cerebral cortex.","definition_xrefs":["GO_REF:0000021","GOC:dph","GOC:jid","GOC:dgh","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telencephalon cell migration","termid":"GO:0022029"},{"relation_name":"part_of","term_name":"cerebral cortex development","termid":"GO:0021987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebral cortex cell migration","termid":"GO:0021795"}


id: GO:0016339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion via plasma-membrane adhesion molecules","termid":"GO:0098742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules","synonyms":[{"name":"calcium-dependent cell adhesion molecule activity","type":"related"}],"termid":"GO:0016339"}


id: PBO:0079016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TruB pseudouridine synthase family member 1","termid":"PBO:0079016"}


id: GO:0050334
data:
  {"annotated_genes":["SJAG_02420"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[57055],"is_not":false,"summary":null,"term":"GO:0050334"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + thiamine = 4-amino-5-hydroxymethyl-2-methylpyrimidine + 5-(2-hydroxyethyl)-4-methylthiazole + H+.","definition_xrefs":["EC:3.5.99.2","RHEA:17509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds","termid":"GO:0016810"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02420":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"thiaminase activity","references_by_uniquename":{"GO_REF:0000002":null},"secondary_identifiers":["KEGG_REACTION:R02133","MetaCyc:THIAMINASE-RXN"],"synonyms":[{"name":"thiaminase II activity","type":"narrow"}],"termid":"GO:0050334","terms_by_termid":{"GO:0050334":null}}


id: PBO:0044339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 23","termid":"PBO:0044339"}


id: PBO:0045594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 5 (pseudogene)","termid":"PBO:0045594"}


id: GO:0046461
data:
  {"annotated_genes":["SJAG_02089","SJAG_01036","SJAG_03604","SJAG_02100","SJAG_02543"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93423],"is_not":false,"summary":null,"term":"GO:0046461"},{"annotations":[117024,97973,91402,93538],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019433"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of neutral lipids, lipids only soluble in solvents of very low polarity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutral lipid metabolic process","termid":"GO:0006638"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01036":null,"SJAG_02089":null,"SJAG_02100":null,"SJAG_02543":null,"SJAG_03604":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"neutral lipid catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"neutral lipid breakdown","type":"exact"},{"name":"neutral lipid catabolism","type":"exact"},{"name":"neutral lipid degradation","type":"exact"}],"termid":"GO:0046461","terms_by_termid":{"GO:0019433":null,"GO:0046461":null}}


id: MONDO:0008289
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any porencephaly in which the cause of the disease is a mutation in the COL4A1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete COL4A1 or COL4A2-related cerebral small vessel disease with hemorrhagic tendency (obsolete MONDO:0018790)","termid":"MONDO:0018790"},{"relation_name":"is_a","term_name":"familial porencephaly","termid":"MONDO:0020496"},{"relation_name":"is_a","term_name":"COL4A1-related disorder","termid":"MONDO:0800461"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain small vessel disease 1 with or without ocular anomalies","secondary_identifiers":["MEDGEN:1647320","OMIM:175780","DOID:0090125","OMIM:607595","MESH:C531642","MESH:C564372","GARD:15107","UMLS:C4551998","Orphanet:36383"],"synonyms":[{"name":"ADT1P","type":"exact"},{"name":"BSVD","type":"exact"},{"name":"BSVD1","type":"exact"},{"name":"COL4A1 porencephaly","type":"exact"},{"name":"COL4A1-related brain small vessel disease with haemorrhage","type":"exact"},{"name":"COL4A1-related brain small vessel disease with hemorrhage","type":"exact"},{"name":"COL4A1-related familial vascular leukoencephalopathy","type":"exact"},{"name":"COL4A1-related retinal arteriolar tortuosity-infantile hemiparesis-autosomal dominant leukoencephalopathy syndrome","type":"exact"},{"name":"POREN1","type":"related"},{"name":"T1P","type":"exact"},{"name":"autosomal dominant retinal arteriolar tortuosity, infantile hemiparesis, and leukencephalopathy","type":"exact"},{"name":"brain small vessel disease with Axenfeld-Riegar anomaly","type":"exact"},{"name":"brain small vessel disease with axenfeld-rieger anomaly","type":"exact"},{"name":"brain small vessel disease with haemorrhage","type":"exact"},{"name":"brain small vessel disease with hemorrhage","type":"exact"},{"name":"brain small vessel disease with or without ocular anomalies","type":"exact"},{"name":"hemiplegia, infantile, with porencephaly","type":"exact"},{"name":"hemiplegia, infantile, with porencephaly porencephaly, type 1","type":"related"},{"name":"infantile hemiparesis","type":"exact"},{"name":"leukoencephalopathy with axenfeld-rieger anomaly","type":"exact"},{"name":"porencephaly 1","type":"exact"},{"name":"porencephaly caused by mutation in COL4A1","type":"exact"},{"name":"porencephaly type 1","type":"exact"},{"name":"porencephaly, type 1, autosomal dominant","type":"related"},{"name":"retinal arteriolar tortuosity, infantile hemiparesis, and leukoencephalopathy, autosomal dominant","type":"exact"}],"termid":"MONDO:0008289","xrefs":{"Monarch":{"xref_id":"0008289"}}}


id: GO:0090437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a socket cell, a shoot epidermal cell that surrounds a trichome and provides its support.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant epidermal cell differentiation","termid":"GO:0090627"},{"relation_name":"part_of","term_name":"plant epidermis development","termid":"GO:0090558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"socket cell differentiation","termid":"GO:0090437"}


id: PBO:0004449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin pho85 family (predicted)","termid":"PBO:0004449"}


id: MOD:01989
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-tyrosine residue by a thioether bond to form 2-(S-L-cysteinyl)-D-tyrosine.","definition_xrefs":["PubMed:21526839","RESID:AA0626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"},{"relation_name":"is_a","term_name":"alpha-carbon thioether crosslinked residues","termid":"MOD:01992"},{"relation_name":"is_a","term_name":"crosslinked L-tyrosine residue","termid":"MOD:02058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"2-(L-cystein-S-yl)-D-tyrosine","synonyms":[{"name":"(2R,5S)-2,5-diamino-5-carboxyl-6-(hydroxyphenyl)-4-thiahexanoic acid","type":"exact"},{"name":"(2S)-2-amino-2-([(2R)-2-amino-2-carboxyethyl]sulfanyl)-3-(4-hydroxyphenyl)propanoic acid","type":"exact"},{"name":"alpha-(L-cystein-S-yl)-D-tyrosine","type":"exact"}],"termid":"MOD:01989"}


id: PBO:0087669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the INO80 chromatin remodeling complex","termid":"PBO:0087669"}


id: PBO:0055881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 7","termid":"PBO:0055881"}


id: PBO:0028102
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-respiratory_chain_complex_IV_absent_from_cell","termid":"PBO:0028102"}


id: PBO:0058039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4260","termid":"PBO:0058039"}


id: MONDO:0000476
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"isolated dystonia","termid":"MONDO:0015494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"}],"interesting_parent_ids":["MONDO:0003441"],"is_obsolete":false,"name":"generalized dystonia","secondary_identifiers":["DOID:0050835","ICD9:333.6","GARD:21618","ICD9:333.8","ICD9:333.89","MESH:D004422","Orphanet:376724","SCTID:425492002","UMLS:C1848954","MEDGEN:341342"],"synonyms":[{"name":"Idiopathic torsion dystonia","type":"related"},{"name":"Idiopathic torsion dystonias","type":"related"},{"name":"Oppenheim Ziehen disease","type":"related"},{"name":"Oppenheim-Ziehen disease","type":"related"},{"name":"Progressive torsion spasm","type":"related"},{"name":"childhood torsion disease","type":"related"},{"name":"dystonia 12","type":"related"},{"name":"dystonia deformans musculorum","type":"related"},{"name":"dystonia deformans progressiva","type":"exact"},{"name":"dystonia musculorum deformans","type":"related"},{"name":"dystonia, Idiopathic torsion","type":"related"},{"name":"dystonias, Idiopathic torsion","type":"related"},{"name":"dystonias, torsion","type":"related"},{"name":"familial dystonia","type":"related"},{"name":"fragments of torsion dystonia","type":"related"},{"name":"generalised isolated dystonia","type":"exact"},{"name":"generalized isolated dystonia","type":"exact"},{"name":"idiopathic familial dystonia","type":"related"},{"name":"idiopathic non-familial dystonia","type":"related"},{"name":"idiopathic torsion dystonia","type":"related"},{"name":"spasm, Progressive torsion","type":"related"},{"name":"symptomatic torsion dystonia","type":"related"},{"name":"torsion disease of childhood","type":"related"},{"name":"torsion disease, childhood","type":"related"},{"name":"torsion dystonia","type":"related"},{"name":"torsion dystonia, Idiopathic","type":"related"},{"name":"torsion spasm, Progressive","type":"related"}],"termid":"MONDO:0000476","xrefs":{"Monarch":{"xref_id":"0000476"}}}


id: GO:0035458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-beta stimulus. Interferon-beta is a type I interferon.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to interferon-beta","termid":"GO:0035456"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to interferon-beta","synonyms":[{"name":"cellular response to beta-1 interferon","type":"related"},{"name":"cellular response to fiblaferon","type":"exact"},{"name":"cellular response to fibroblast interferon","type":"exact"}],"termid":"GO:0035458"}


id: GO:0015565
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of threonine from the inside of the cell to the outside of the cell across a membrane.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-threonine transmembrane transporter activity","termid":"GO:0015195"},{"relation_name":"is_a","term_name":"L-amino acid efflux transmembrane transporter activity","termid":"GO:0034639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"threonine efflux transmembrane transporter activity","synonyms":[{"name":"threonine efflux permease activity","type":"exact"},{"name":"threonine export protein","type":"related"},{"name":"threonine export transporter activity","type":"exact"}],"termid":"GO:0015565"}


id: MONDO:0958301
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A round cell sarcoma with EWSR1-non-ETS fusion that is characterized by the presence of FUS-NFATC2 gene fusion.","definition_xrefs":["DOID:0081410"],"direct_ancestors":[{"relation_name":"is_a","term_name":"round cell sarcoma with EWSR1-non-ETS fusion","termid":"MONDO:0958160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"round cell sarcoma with FUS-NFATC2 gene fusion","secondary_identifiers":["UMLS:C5555054","MEDGEN:1791495"],"termid":"MONDO:0958301","xrefs":{"Monarch":{"xref_id":"0958301"}}}


id: PBO:0084379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Low-affinity amino acid permease; may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation; plays a role in regulating Ty1 transposition","termid":"PBO:0084379"}


id: PBO:0016125
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"this gene is located in the silent mating type region, it is only transcribed when at the mat1 locus, see mat1-Mc","termid":"PBO:0016125"}


id: PBO:0089717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOG/XMAP215 microtubule plus end tracking polymerase Dis1","termid":"PBO:0089717"}


id: GO:0042554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways.","definition_xrefs":["PMID:12359750","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"superoxide metabolic process","termid":"GO:0006801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"superoxide anion generation","synonyms":[{"name":"superoxide release","type":"exact"}],"termid":"GO:0042554"}


id: PBO:0002410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor zf-C2H2 type (predicted)","termid":"PBO:0002410"}


id: GO:0090375
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of iron ions.","definition_xrefs":["GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transcription from RNA polymerase II promoter in response to iron ion starvation (obsolete GO:0090375)","synonyms":[{"name":"negative regulation of transcription from RNA polymerase II promoter in response to iron deficiency","type":"exact"}],"termid":"GO:0090375"}


id: PBO:0042941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin assembly factor 1 subunit B","termid":"PBO:0042941"}


id: PBO:0000775
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWm associated Phd1","termid":"PBO:0000775"}


id: MONDO:0002451
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare benign neoplasm that arises from the prostate gland and is characterized by the presence of hyperplastic glands and stroma that contains spindle-shaped cells.","definition_xrefs":["NCIT:C5532"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign urinary system neoplasm","termid":"MONDO:0004180"},{"relation_name":"is_a","term_name":"prostate phyllodes tumor","termid":"MONDO:0021102"},{"relation_name":"is_a","term_name":"benign neoplasm of prostate","termid":"MONDO:0021510"},{"relation_name":"is_a","term_name":"benign phyllodes tumor","termid":"MONDO:0037002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign prostate phyllodes tumor","secondary_identifiers":["MEDGEN:272364","DOID:2885","UMLS:C1332535"],"synonyms":[{"name":"benign phyllodes neoplasm of prostate","type":"exact"},{"name":"benign phyllodes neoplasm of the prostate","type":"exact"},{"name":"benign phyllodes tumor of prostate","type":"exact"},{"name":"benign phyllodes tumor of the prostate","type":"exact"},{"name":"benign phyllodes tumour of prostate","type":"exact"},{"name":"benign phyllodes tumour of the prostate","type":"exact"},{"name":"benign prostate phyllodes neoplasm","type":"exact"},{"name":"benign prostate phyllodes tumor","type":"exact"},{"name":"phyllodes neoplasm of the prostate","type":"broad"},{"name":"prostate phyllodes tumor","type":"broad"},{"name":"prostate phyllodes tumor, benign","type":"exact"},{"name":"prostate phyllodes tumour","type":"broad"}],"termid":"MONDO:0002451","xrefs":{"Monarch":{"xref_id":"0002451"}}}


id: PBO:0001285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal recognition particle subunit Srp21 (predicted)","termid":"PBO:0001285"}


id: PBO:0048217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gastric cancer associated transcript 1","termid":"PBO:0048217"}


id: MONDO:0006292
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm of the pleura or peritoneum, arising from mesothelial cells. It is associated with exposure to asbestos.","definition_xrefs":["NCIT:C4456"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cancer","termid":"MONDO:0004992"},{"relation_name":"is_a","term_name":"mesothelioma","termid":"MONDO:0005065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant mesothelioma","secondary_identifiers":["MEDGEN:91062","HP:0100001","OMIM:156240","SCTID:109378008","EFO:1000355","GARD:7026","UMLS:C0345967","DOID:1790","icd11.foundation:369414280","ICD9:199.1","ICDO:9050/3","MedDRA:10027406","MESH:C562839","Orphanet:50251"],"synonyms":[{"name":"MESOM","type":"related"},{"name":"advanced malignant mesothelioma","type":"narrow"},{"name":"asbestos-related malignant mesothelioma","type":"narrow"},{"name":"diffuse malignant mesothelioma","type":"narrow"},{"name":"malignant mesothelial neoplasm","type":"narrow"},{"name":"malignant mesothelial tumor","type":"exact"},{"name":"malignant mesothelial tumour","type":"exact"},{"name":"malignant mesothelioma","type":"exact"},{"name":"malignant mesothelioma (disease)","type":"exact"},{"name":"malignant neoplasm of mesothelium","type":"exact"},{"name":"malignant neoplasm of the mesothelium","type":"exact"},{"name":"malignant tumor of mesothelium","type":"exact"},{"name":"malignant tumor of the mesothelium","type":"exact"},{"name":"malignant tumour of mesothelium","type":"exact"},{"name":"malignant tumour of the mesothelium","type":"exact"},{"name":"mesothelioma, malignant","type":"exact"},{"name":"mesothelioma, somatic","type":"exact"}],"termid":"MONDO:0006292","xrefs":{"Monarch":{"xref_id":"0006292"}}}


id: FYPO:0003546
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of DNA damage measured in a cell is greater than normal. The number, extent, or both of damage sites may be increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular physical quality phenotype","termid":"FYPO:0000136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"increased DNA damage","synonyms":[{"name":"increased number of DNA lesions","type":"related"},{"name":"increased spontaneous DNA lesions","type":"related"}],"termid":"FYPO:0003546"}


id: FYPO:0005403
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the single-stranded telomeric 3' overhang is not present. Total telomere length may be normal or abnormal.","definition_xrefs":["PMID:12861005","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal telomere morphology during vegetative growth","termid":"FYPO:0002254"},{"relation_name":"is_a","term_name":"abnormal telomere structure","termid":"FYPO:0006510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000641","FYPO:0000293","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"telomeric 3' overhang absent during vegetative growth","synonyms":[{"name":"single-stranded telomeric 3' overhang absent during vegetative growth","type":"exact"},{"name":"telomere 3' overhang absent during vegetative growth","type":"exact"},{"name":"telomeric 3' overhang absent during mitotic cell cycle","type":"related"},{"name":"telomeric G-strand overhang absent during vegetative growth","type":"exact"}],"termid":"FYPO:0005403"}


id: PBO:0075736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRP14 pseudogene 4","termid":"PBO:0075736"}


id: FYPO:0008176
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which RNAs transcribed from the centromere inner repeat region are present at greater levels than normal.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased centromeric transcript level","termid":"FYPO:0004982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"increased centromeric inner repeat transcript level","termid":"FYPO:0008176"}


id: PBO:0088371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contractile ring-membrane anchor Fic1","termid":"PBO:0088371"}


id: PBO:0071078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 80","termid":"PBO:0071078"}


id: PBO:0012571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome complex subunit beta 6","termid":"PBO:0012571"}


id: GO:0072243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric nephron epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron epithelium development","termid":"GO:0072009"},{"relation_name":"is_a","term_name":"metanephric epithelium development","termid":"GO:0072207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric nephron epithelium development","termid":"GO:0072243"}


id: PBO:0017078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA small nucleolar RNA snR10","termid":"PBO:0017078"}


id: MONDO:0012646
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete glaucoma 1, open angle, H (obsolete MONDO:0012646)","secondary_identifiers":["OMIM:611276","MESH:C566976"],"synonyms":[{"name":"GLC1H","type":"exact"},{"name":"glaucoma 1, open angle, H","type":"exact"}],"termid":"MONDO:0012646","xrefs":{"Monarch":{"xref_id":"0012646"}}}


id: PR:O13982
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An angio-associated migratory cell protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized WD repeat-containing protein C25H1.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25H1.08c","secondary_identifiers":["UniProtKB:O13982"],"synonyms":[{"name":"Spom972h-AAMP","type":"exact"}],"termid":"PR:O13982"}


id: MONDO:0020187
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete eyelashes hypertrophy (obsolete MONDO:0020187)","secondary_identifiers":["Orphanet:98597"],"synonyms":[{"name":"eyelashes polytrichia","type":"exact"},{"name":"eyelashes trichomegalia","type":"exact"}],"termid":"MONDO:0020187","xrefs":{"Monarch":{"xref_id":"0020187"}}}


id: PBO:0000253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium channel regulatory subunit Yam8","termid":"PBO:0000253"}


id: GO:0052541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as part of the organization and biogenesis of the cell wall.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellulose metabolic process","termid":"GO:0030243"},{"relation_name":"is_a","term_name":"cell wall beta-glucan metabolic process","termid":"GO:0034406"},{"relation_name":"part_of","term_name":"plant-type cell wall organization","termid":"GO:0009664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"plant-type cell wall cellulose metabolic process","synonyms":[{"name":"cell wall cellulose metabolism","type":"exact"},{"name":"cellulose and pectin-containing cell wall cellulose metabolic process","type":"exact"}],"termid":"GO:0052541"}


id: FYPO:0004351
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is increased during a cellular response to methylglyoxal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to nucleus during vegetative growth","termid":"FYPO:0001130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased protein localization to nucleus during cellular response to methylglyoxal","synonyms":[{"name":"increased protein localisation to nucleus during cellular response to methylglyoxal","type":"exact"},{"name":"increased protein localization to nucleus during cellular response to methylglyoxal during mitotic cell cycle","type":"related"},{"name":"increased protein localization to nucleus during cellular response to methylglyoxal during vegetative growth","type":"exact"}],"termid":"FYPO:0004351"}


id: MONDO:0004567
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Decrease in peristalsis in the absence of a mechanical bowel obstruction.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal obstruction","termid":"MONDO:0004565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"ileus","secondary_identifiers":["SCTID:710572000","UMLS:C1258215","DOID:8440","MESH:D045823","NCIT:C37979","MEDGEN:219874"],"synonyms":[{"name":"ileus of intestine","type":"exact"}],"termid":"MONDO:0004567","xrefs":{"Monarch":{"xref_id":"0004567"}}}


id: GO:0016206
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a catechol + S-adenosyl-L-methionine = a guaiacol + H+ + S-adenosyl-L-homocysteine. Acts on catechols and on catecholamines such as adrenaline or noradrenaline.","definition_xrefs":["RHEA:17877","EC:2.1.1.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"catechol O-methyltransferase activity","secondary_identifiers":["Reactome:R-HSA-175983","MetaCyc:CATECHOL-O-METHYLTRANSFERASE-RXN","Reactome:R-HSA-8955010"],"synonyms":[{"name":"COMT I","type":"related"},{"name":"COMT II","type":"related"},{"name":"MB-COMT (membrane-bound form of catechol-O-methyltransferase)","type":"related"},{"name":"S-COMT (soluble form of catechol-O-methyltransferase)","type":"related"},{"name":"S-adenosyl-L-methionine:catechol O-methyltransferase activity","type":"related"},{"name":"catechol methyltransferase activity","type":"related"},{"name":"catecholamine O-methyltransferase activity","type":"related"}],"termid":"GO:0016206"}


id: GO:2001212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of vasculogenesis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"vasculogenesis","termid":"GO:0001570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vasculogenesis","synonyms":[{"name":"regulation of vascular morphogenesis","type":"exact"}],"termid":"GO:2001212"}


id: FYPO:0000058
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell contains fewer mitochondrial nucleoids than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"mitochondrial nucleoids present in decreased numbers","synonyms":[{"name":"decreased number of mitochondrial nucleoids","type":"exact"},{"name":"fewer mitochondrial nucleoids present","type":"exact"},{"name":"mitochondrial nucleoid decreased number","type":"exact"},{"name":"mitochondrial nucleoids present in decreased numbers during mitotic cell cycle","type":"related"},{"name":"mitochondrial nucleoids present in decreased numbers during vegetative growth","type":"exact"},{"name":"mitochondrial nucleoids present in reduced numbers","type":"exact"}],"termid":"FYPO:0000058"}


id: GO:0009297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly from its constituent parts of a pilus, a short filamentous structure of bacterial cell, flagella-like in structure and generally present in many copies. Pili are variously involved in transfer of nucleic acids, adherence to surfaces, and formation of pellicles. Is required for bacterial conjugation, or can play a role in adherence to surfaces (when it is called a fimbrium), and in the formation of pellicles.","definition_xrefs":["GOC:mcc2","GOC:tb","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection assembly","termid":"GO:0030031"},{"relation_name":"is_a","term_name":"pilus organization","termid":"GO:0043711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"pilus assembly","synonyms":[{"name":"fimbria assembly","type":"narrow"},{"name":"fimbria biogenesis","type":"related"},{"name":"fimbriae assembly","type":"narrow"},{"name":"fimbriae biogenesis","type":"related"},{"name":"fimbrial assembly","type":"narrow"},{"name":"fimbrium assembly","type":"narrow"},{"name":"fimbrium biogenesis","type":"related"},{"name":"pilus biogenesis","type":"related"},{"name":"pilus formation","type":"exact"}],"termid":"GO:0009297"}


id: PBO:0000908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-directed RNA polymerase Rdp1","termid":"PBO:0000908"}


id: PBO:0003969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab geranylgeranyltransferase escort protein (predicted)","termid":"PBO:0003969"}


id: PBO:0079905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome c reductase binding protein pseudogene 3","termid":"PBO:0079905"}


id: GO:2000574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of microtubule motor activity.","definition_xrefs":["GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of microtubule motor activity (obsolete GO:2000574)","synonyms":[{"name":"regulation of axonemal motor activity","type":"related"},{"name":"regulation of dynein","type":"related"},{"name":"regulation of dynein ATPase activity","type":"related"},{"name":"regulation of kinesin","type":"related"},{"name":"regulation of kinesin motor activity","type":"related"},{"name":"regulation of kinetochore motor activity","type":"related"}],"termid":"GO:2000574"}


id: MONDO:0019260
data:
  {"annotated_genes":["SJAG_02518","SJAG_03052"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85962,85963],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008083"}]},"cv_name":"mondo","definition":"A genetically heterogeneous group of neuronal ceroid lipofuscinoses (NCLs) with onset during the third decade of life, characterized by dementia, seizures and loss of motor capacities, and sometimes associated with visual loss caused by retinal degeneration.","definition_xrefs":["Orphanet:79262"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"progressive myoclonus epilepsy","termid":"MONDO:0020074"},{"relation_name":"is_a","term_name":"neuronal ceroid lipofuscinosis","termid":"MONDO:0016295"},{"relation_name":"is_a","term_name":"cerebral lipidosis with dementia","termid":"MONDO:0020143"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02518":null,"SJAG_03052":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005066","MONDO:0005559","MONDO:0002525","MONDO:0002561"],"is_obsolete":false,"name":"adult neuronal ceroid lipofuscinosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:62009002","NANDO:2201244","GARD:10973","UMLS:C0022797","icd11.foundation:1460031344","NORD:1341","MEDGEN:7230","NANDO:1200155"],"synonyms":[{"name":"ANCL","type":"exact"},{"name":"CLN4 disease, adult autosomal dominant","type":"related"},{"name":"Kuf's disease","type":"related"},{"name":"Kufs disease","type":"exact"},{"name":"adult NCL","type":"exact"},{"name":"adult neuronal ceroid lipofuscinosis","type":"exact"},{"name":"neuronal ceroid lipofuscinosis 4","type":"related"},{"name":"neuronal ceroid lipofuscinosis of adults","type":"exact"}],"termid":"MONDO:0019260","terms_by_termid":{"MONDO:0008083":null},"xrefs":{"Monarch":{"xref_id":"0019260"}}}


id: GO:0035653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a macromolecular complex between proteins of the AP-1 adaptor complex and proteins and/or lipoproteins that are going to be transported by a clathrin-coated vesicle. The AP-1 adaptor protein complex is a component of the cytoplasmic coat found on clathrin-coated vesicles, and binds to sorting signals of cargo to facilitate their trafficking.","definition_xrefs":["GOC:lb","PMID:16162817","PMID:12802059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin-coated vesicle cargo loading","termid":"GO:0035652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"clathrin-coated vesicle cargo loading, AP-1-mediated","synonyms":[{"name":"cargo loading into clathrin-coated vesicle, AP-1-mediated","type":"exact"}],"termid":"GO:0035653"}


id: PBO:0060216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MVP divergent transcript","termid":"PBO:0060216"}


id: GO:0097452
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which mediates interferon-gamma-induced transcript-selective translation inhibition in inflammation processes. The complex binds to stem loop-containing GAIT elements in the 3'-UTR of diverse inflammatory mRNAs and suppresses their translation by blocking the recruitment of the 43S ribosomal complex to m7G cap-bound eIF4G. In humans it includes RPL13A, EPRS, SYNCRIP and GAPDH; mouse complexes lack SYNCRIP.","definition_xrefs":["PMID:23071094","PMID:15479637","GOC:br"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"GAIT complex","synonyms":[{"name":"IFN-gamma-activated inhibitor of translation complex","type":"exact"},{"name":"gamma interferon-activated inhibitor of translation complex","type":"exact"}],"termid":"GO:0097452"}


id: GO:0005262
data:
  {"annotated_genes":["SJAG_05229","SJAG_01090","SJAG_02019","SJAG_04668","SJAG_04471","SJAG_02877","SJAG_02532"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91914,95187,113882,116826],"is_not":false,"summary":null,"term":"GO:0005262"},{"annotations":[99129],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008331"},{"annotations":[91858,113367,91915,99130],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015275"}]},"cv_name":"molecular_function","definition":"Enables the energy-independent facilitated diffusion of a calcium ion through a transmembrane aqueous pore or channel.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation channel activity","termid":"GO:0005261"},{"relation_name":"is_a","term_name":"calcium ion transmembrane transporter activity","termid":"GO:0015085"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01090":null,"SJAG_02019":null,"SJAG_02532":null,"SJAG_02877":null,"SJAG_04471":null,"SJAG_04668":null,"SJAG_05229":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"calcium channel activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-139855","Reactome:R-HSA-9858800","Reactome:R-HSA-210420","Reactome:R-HSA-8949178","Reactome:R-HSA-9663785","Reactome:R-HSA-3295579","Reactome:R-HSA-8949145","Reactome:R-HSA-139854"],"termid":"GO:0005262","terms_by_termid":{"GO:0005262":null,"GO:0008331":null,"GO:0015275":null}}


id: SO:0000579
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A locatable feature on a transcript that is edited.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_region","termid":"SO:0000833"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"edited_transcript_feature","synonyms":[{"name":"edited transcript feature","type":"exact"}],"termid":"SO:0000579"}


id: PBO:0059598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 10","termid":"PBO:0059598"}


id: GO:0036315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sterol stimulus.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to sterol","termid":"GO:0036314"},{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to organic cyclic compound","termid":"GO:0071407"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to sterol","termid":"GO:0036315"}


id: PBO:0086772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; subunit of evolutionarily conserved EMC (Endoplasmic Reticulum Membrane Complex) implicated in ERAD (ER-associated degradation) and proper assembly of multi-pass transmembrane (TM) proteins; EMC acts in yeast as an ER-mitochondria tether that interacts with outer membrane protein Tom5p of TOM (Translocase of the Mitochondrial Outer Membrane) complex; YDR056C is not an essential protein","termid":"PBO:0086772"}


id: PBO:0090099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Stx8","termid":"PBO:0090099"}


id: MONDO:0007811
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ichthyosis-cheek-eyebrow syndrome is characterized by ichthyosis, prominent full cheeks and sparse lateral eyebrows. It has been described in several individuals from four generations of one family. Transmission is autosomal dominant.","definition_xrefs":["Orphanet:2267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ichthyosis-cheek-eyebrow syndrome","secondary_identifiers":["SCTID:716097001","UMLS:C1840283","MESH:C536084","OMIM:146720","MEDGEN:326697"],"synonyms":[{"name":"Ice syndrome","type":"related"},{"name":"Sidransky Feinstein Goodman syndrome","type":"related"},{"name":"Sidransky-Feinstein-Goodman syndrome","type":"exact"},{"name":"ichthyosis cheek eyebrow syndrome","type":"related"},{"name":"ichthyosis--cheek--eyebrow syndrome","type":"related"}],"termid":"MONDO:0007811","xrefs":{"Monarch":{"xref_id":"0007811"}}}


id: PBO:0081891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 841","termid":"PBO:0081891"}


id: MONDO:0011134
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Curry-Jones syndrome is a form of syndromic craniosynostosis, characterized by unilateral coronal craniosynostosis or multiple suture synostosis associated with complete or partial agenesis of the corpus callosum, preaxial polysyndactyly and syndactyly of hands and/or feet, along with anomalies of the skin (characteristic pearly white areas that become scarred and atrophic, abnormal hair growth around the eyes and/or cheeks, and on the limbs), eyes (iris colobomas, microphthalmia,) and intestine (congenital short gut, malrotation, dysmotility, chronic constipation, bleeding and myofibromas). Developmental delay and variable degrees of intellectual disability may also be observed. Multiple intra-abdominal smooth muscle hamartomas, trichoblastoma of the skin, occipital meningoceles and development of desmoplastic medulloblastoma have been reported.","definition_xrefs":["Orphanet:1553"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic craniosynostosis","termid":"MONDO:0015338"},{"relation_name":"is_a","term_name":"mosaic SMO syndrome","termid":"MONDO:1030005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Curry-Jones syndrome","secondary_identifiers":["UMLS:C0795915","MEDGEN:167083","MESH:C536735","OMIM:601707","SCTID:720819006","GARD:5584"],"synonyms":[{"name":"CRJS","type":"related"},{"name":"Curry-Jones syndrome, somatic mosaic","type":"exact"},{"name":"corpus callosum agenesis polysyndactyly","type":"related"},{"name":"corpus callosum agenesis-polysyndactyly syndrome","type":"exact"},{"name":"craniofacial malformations, asymmetric, with polysyndactyly and abnormal skin and gut development","type":"related"},{"name":"curry Jones syndrome","type":"related"},{"name":"curry-JONES syndrome","type":"related"},{"name":"curry-Jones syndrome","type":"exact"}],"termid":"MONDO:0011134","xrefs":{"Monarch":{"xref_id":"0011134"}}}


id: PBO:0079127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"teashirt zinc finger homeobox 3","termid":"PBO:0079127"}


id: PBO:0034108
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_subsequence","termid":"PBO:0034108"}


id: FYPO:0002121
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of sodium:hydrogen antiporter activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transmembrane transporter activity","termid":"FYPO:0002116"},{"relation_name":"is_a","term_name":"abnormal proton transport","termid":"FYPO:0005971"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002114"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000138","FYPO:0002114","FYPO:0001985","FYPO:0000652","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal sodium:hydrogen antiporter activity","termid":"FYPO:0002121"}


id: PBO:0090863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine-fructose-6-phosphate transaminase Gfa1","termid":"PBO:0090863"}


id: PR:P87316
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atp15 gene.","definition_xrefs":["UniProtKB:P87316","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase subunit epsilon, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC31F10.15c","synonyms":[{"name":"ATPase subunit epsilon (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-atp15","type":"exact"}],"termid":"PR:P87316"}


id: MONDO:0045068
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive carcinoma that arises from the minor salivary glands. It is characterized by the presence of malignant epithelial and myoepithelial cells forming cribriform, tubular, and solid patterns. It usually presents as a slow growing mass.","definition_xrefs":["NCIT:C5936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland adenoid cystic carcinoma","termid":"MONDO:0003175"},{"relation_name":"is_a","term_name":"minor salivary gland adenocarcinoma","termid":"MONDO:0006304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"minor salivary gland adenoid cystic carcinoma","secondary_identifiers":["MEDGEN:233709","UMLS:C1334769"],"synonyms":[{"name":"adenoid cystic carcinoma of minor salivary gland","type":"exact"},{"name":"adenoid cystic carcinoma of the minor salivary gland","type":"exact"},{"name":"minor salivary gland adenoid cystic carcinoma","type":"exact"}],"termid":"MONDO:0045068","xrefs":{"Monarch":{"xref_id":"0045068"}}}


id: PBO:0036189
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitotic_spindle_elongation_without_chromosome_separation_with_centromeric_DNA_dissociated_from_spindle","termid":"PBO:0036189"}


id: PBO:0084478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mating type locus; note that the systematic sequence in SGD contains MATalpha sequences","termid":"PBO:0084478"}


id: PR:Q09782
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GPI ethanolamine phosphate transferase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR23072:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI ethanolamine phosphate transferase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13G6.03","secondary_identifiers":["UniProtKB:Q09782"],"synonyms":[{"name":"SPAC13G6.03","type":"related"},{"name":"Spom972h-PIGG","type":"exact"},{"name":"glycosylphosphatidylinositol-anchor biosynthesis protein 7 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"gpi7","type":"related"}],"termid":"PR:Q09782"}


id: PBO:0079552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 5","termid":"PBO:0079552"}


id: PBO:0073529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2","termid":"PBO:0073529"}


id: GO:0052765
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 reduced coenzyme F420 + O2 = 2 coenzyme F420 + 2 H2O.","definition_xrefs":["GOC:mengo_curators","PMID:15340796"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"reduced coenzyme F420 oxidase activity","synonyms":[{"name":"F420H2 oxidase activity","type":"exact"},{"name":"F420H2:oxygen oxidoreductase activity","type":"exact"},{"name":"coenzyme F420H2 oxidase activity","type":"exact"}],"termid":"GO:0052765"}


id: GO:0048006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses lipid antigen of endogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family.","definition_xrefs":["PMID:10375559","GOC:add","PMID:15928678","PMID:15928680"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous antigen","termid":"GO:0019883"},{"relation_name":"is_a","term_name":"antigen processing and presentation of lipid antigen via MHC class Ib","termid":"GO:0048003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation, endogenous lipid antigen via MHC class Ib","synonyms":[{"name":"antigen presentation, endogenous lipid antigen","type":"exact"},{"name":"endogenous lipid antigen processing and presentation via MHC class Ib","type":"exact"}],"termid":"GO:0048006"}


id: PBO:0076880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 29","termid":"PBO:0076880"}


id: PBO:0084688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial copper and phosphate carrier; imports copper and inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature","termid":"PBO:0084688"}


id: PBO:0085532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S30, no bacterial homolog; RPS30A has a paralog, RPS30B, that arose from the whole genome duplication","termid":"PBO:0085532"}


id: GO:0044331
data:
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id: MONDO:0004225
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition characterized by the presence of a monoclonal gammopathy (MG) in which the clonal mass has not reached a predefined state in which the condition is considered malignant. Up to 25% of cases of monoclonal gammopathy of undetermined significance (MGUS) progress to a B-cell malignancy or myeloma. MGUS may occur in conjunction with various carcinomas, chronic inflammatory and infectious conditions, and other diseases.","definition_xrefs":["NCIT:C3996"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"plasma cell neoplasm","termid":"MONDO:0004959"},{"relation_name":"is_a","term_name":"monoclonal gammopathy","termid":"MONDO:0004960"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"monoclonal gammopathy of uncertain significance","secondary_identifiers":["ICDO:9765/1","MEDGEN:44485","ONCOTREE:MGUS","SCTID:58648008","ICD9:238.6","DOID:7442","MESH:D008998","SCTID:277577000","UMLS:C0026470"],"synonyms":[{"name":"MGUS","type":"exact"},{"name":"benign monoclonal gammopathy","type":"exact"},{"name":"monoclonal gammopathy Of undetermined significance (MGUS)","type":"exact"},{"name":"monoclonal gammopathy of undetermined significance","type":"exact"},{"name":"monoclonal gammopathy of undetermined significance (MGUS)","type":"exact"},{"name":"monoclonal gammopathy of undetermined significance (morphologic abnormality)","type":"exact"},{"name":"monoclonal gammopathy of unknown significance","type":"exact"},{"name":"monoclonal gammopathy, benign","type":"exact"}],"termid":"MONDO:0004225","xrefs":{"Monarch":{"xref_id":"0004225"}}}


id: FYPO:0000139
data:
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id: PBO:0088883
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id: GO:0010557
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regulation of macromolecule biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:0010557","terms_by_termid":{"GO:0010628":null,"GO:0032786":null,"GO:0032968":null,"GO:0045815":null,"GO:0045893":null,"GO:0045899":null,"GO:0045901":null,"GO:0045905":null,"GO:0045943":null,"GO:0045944":null,"GO:0045948":null,"GO:0048026":null,"GO:0048255":null,"GO:0060212":null,"GO:0060261":null,"GO:0060635":null,"GO:0060906":null,"GO:0060963":null,"GO:0061188":null,"GO:0070131":null,"GO:0070134":null,"GO:0070935":null,"GO:0120271":null,"GO:0140748":null,"GO:1902373":null,"GO:1904595":null,"GO:1905746":null,"GO:2000767":null}}


id: PBO:0044573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DBF4 zinc finger pseudogene 3","termid":"PBO:0044573"}


id: PBO:0047194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 210 member B","termid":"PBO:0047194"}


id: MONDO:0019790
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neuroleptic malignant syndrome (NMS) is an idiosyncratic condition associated with administration of antipsychotic and other central dopaminergic blockers, and characterized by hyperthermia, muscular rigidity, autonomic dysfunction and altered consciousness.","definition_xrefs":["Orphanet:94093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroleptic malignant syndrome","secondary_identifiers":["MEDGEN:10320","MESH:D009459","NORD:1504","EFO:1001379","ICD10CM:G21.0","GARD:7195","icd11.foundation:498240876","DOID:14464","ICD9:333.92","MedDRA:10029282","NCIT:C94829","SCTID:15244003","UMLS:C0027849"],"synonyms":[{"name":"NMS","type":"exact"}],"termid":"MONDO:0019790","xrefs":{"Monarch":{"xref_id":"0019790"}}}


id: MONDO:0002554
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign tumor derived from schwann cells of the peripheral sympathetic nervous system, including the sympathetic plexus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autonomic nervous system neoplasm","termid":"MONDO:0002366"},{"relation_name":"is_a","term_name":"schwannoma","termid":"MONDO:0002546"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sympathetic neurilemmoma","secondary_identifiers":["MEDGEN:236964","UMLS:C1336543","DOID:3201","NCIT:C5421"],"synonyms":[{"name":"sympathetic schwannoma","type":"exact"}],"termid":"MONDO:0002554","xrefs":{"Monarch":{"xref_id":"0002554"}}}


id: GO:0032722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of chemokine production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of chemokine production","termid":"GO:0032642"},{"relation_name":"positively_regulates","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of chemokine production","secondary_identifiers":["GO:0090197","GO:0045080"],"synonyms":[{"name":"activation of chemokine production","type":"narrow"},{"name":"positive regulation of chemokine biosynthetic process","type":"narrow"},{"name":"positive regulation of chemokine secretion","type":"narrow"},{"name":"stimulation of chemokine production","type":"narrow"},{"name":"up regulation of chemokine production","type":"exact"},{"name":"up-regulation of chemokine production","type":"exact"},{"name":"upregulation of chemokine production","type":"exact"}],"termid":"GO:0032722"}


id: PBO:0046093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A2 pseudogene 4","termid":"PBO:0046093"}


id: FYPO:0006759
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which chromosome organization is abnormal during the meiotic cell cycle.","definition_xrefs":["PomBase:mah","GO:0070192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome organization","termid":"FYPO:0000641"},{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle process","termid":"FYPO:0002739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0000002","FYPO:0005447","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"abnormal meiotic chromosome organization","synonyms":[{"name":"abnormal chromosome organization during meiotic cell cycle","type":"exact"},{"name":"abnormal chromosome organization involved in meiotic cell cycle","type":"exact"},{"name":"abnormal meiotic chromosome organisation","type":"exact"}],"termid":"FYPO:0006759"}


id: PBO:0085857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; protein abundance increases in response to DNA replication stress","termid":"PBO:0085857"}


id: MONDO:0005473
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any condition affecting the anatomic and functional characteristics of the temporomandibular joint.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arthropathy","termid":"MONDO:0006816"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"temporomandibular joint disorder","secondary_identifiers":["NCIT:C63709","SCTID:41888000","MEDGEN:21092","MESH:D013705","ICD9:524.60","ICD9:524.69","EFO:0005279","UMLS:C0039494"],"synonyms":[{"name":"TMD","type":"exact"}],"termid":"MONDO:0005473","xrefs":{"Monarch":{"xref_id":"0005473"}}}


id: GO:0015425
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + nonpolar amino acid(out) = ADP + phosphate + nonpolar amino acid(in).","definition_xrefs":["EC:7.4.2.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ABC-type amino acid transporter activity","termid":"GO:0015424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"ATPase-coupled nonpolar-amino acid transporter activity","secondary_identifiers":["MetaCyc:3.6.3.22-RXN","TC:3.A.1.4.1"],"synonyms":[{"name":"ATP-dependent nonpolar-amino acid transporter activity","type":"exact"},{"name":"leucine/isoleucine/valine porter activity","type":"related"},{"name":"nonpolar amino acid-transporting ATPase activity","type":"exact"},{"name":"nonpolar-amino acid ABC transporter","type":"exact"},{"name":"nonpolar-amino acid-transporting ATPase activity","type":"exact"},{"name":"nonpolar-amino-acid-transporting ATPase activity","type":"exact"}],"termid":"GO:0015425"}


id: PBO:0059277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L36 pseudogene 1","termid":"PBO:0059277"}


id: GO:0061496
data:
  {"annotated_genes":["SJAG_04558","SJAG_01760","SJAG_01215","SJAG_03835","SJAG_02609","SJAG_03544","SJAG_02737"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[108299,109060,110028,112077,112281,114563,116377],"is_not":false,"summary":null,"term":"GO:0061496"}]},"cv_name":"cellular_component","definition":"Structure adjacent to the plaques of the mitotic spindle pole body.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"half bridge of spindle pole body","termid":"GO:0005825"},{"relation_name":"part_of","term_name":"mitotic spindle pole body","termid":"GO:0044732"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01215":null,"SJAG_01760":null,"SJAG_02609":null,"SJAG_02737":null,"SJAG_03544":null,"SJAG_03835":null,"SJAG_04558":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"part_of","termid":"GO:0005816"}],"interesting_parent_ids":["GO:0005575","GO:0005816","GO:0015630"],"is_obsolete":false,"name":"half bridge of mitotic spindle pole body","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061496","terms_by_termid":{"GO:0061496":null}}


id: GO:0036331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of an avascular cornea over time, from its formation to the mature structure. Corneal avascularity (the absence of blood vessels in the cornea) is required for optical clarity and optimal vision. Avascular corneas are present in most animals, except Manatees.","definition_xrefs":["GOC:uh","PMID:17051153","PMID:16849433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cornea development in camera-type eye","termid":"GO:0061303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"avascular cornea development in camera-type eye","synonyms":[{"name":"avascular cornea development","type":"exact"}],"termid":"GO:0036331"}


id: MONDO:0015019
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An an autoinflammatory disease characterized by periodic fever, dermatitis, arthritis, and swelling of the distal extremities, as well as gastrointestinal and sicca-like symptoms. The disorder is associated with specific NOD2 variants.","definition_xrefs":["OMIM:617321"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Yao syndrome","secondary_identifiers":["MEDGEN:934587","SCTID:768667002","UMLS:C4310620"],"synonyms":[{"name":"YAOS","type":"exact"},{"name":"Yao syndrome","type":"exact"}],"termid":"MONDO:0015019","xrefs":{"Monarch":{"xref_id":"0015019"}}}


id: GO:0036292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which interchain hydrogen bonds between two single-stranded DNA (ssDNA) are reformed to regenerate double-stranded DNA (dsDNA). ssDNA is often bound and stabilized by proteins such as replication protein A (RPA) to form ssDNA bubbles. The bubbles can be rewound by ATP-dependent motors to reform base pairs between strands and thus dsDNA.","definition_xrefs":["PMID:21078962","PMID:22705370","PMID:22759634","PMID:22704558"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA rewinding (obsolete GO:0036292)","synonyms":[{"name":"DNA annealing","type":"related"},{"name":"RPA-dependent DNA rewinding","type":"narrow"},{"name":"single-stranded DNA bubble rewinding","type":"narrow"}],"termid":"GO:0036292"}


id: GO:0052075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of the jasmonic acid-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by symbiont of host jasmonic acid-mediated defense response (obsolete GO:0052075)","synonyms":[{"name":"activation by symbiont of host jasmonic acid-mediated defense response","type":"narrow"},{"name":"induction by organism of host JA-mediated defense response","type":"narrow"},{"name":"induction by organism of host jasmonic acid-mediated defense response","type":"narrow"},{"name":"positive regulation by organism of host JA-mediated defense response","type":"exact"},{"name":"positive regulation by organism of jasmonic acid-mediated defense response of other organism involved in symbiotic interaction","type":"broad"},{"name":"positive regulation by symbiont of host jasmonic acid-mediated defense response","type":"exact"},{"name":"stimulation by symbiont of host jasmonic acid-mediated defense response","type":"narrow"},{"name":"up regulation by symbiont of host jasmonic acid-mediated defense response","type":"exact"},{"name":"up-regulation by symbiont of host jasmonic acid-mediated defense response","type":"exact"},{"name":"upregulation by symbiont of host jasmonic acid-mediated defense response","type":"exact"}],"termid":"GO:0052075"}


id: PBO:0044116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer/testis antigen 2","termid":"PBO:0044116"}


id: MONDO:0012043
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Reis-Bücklers corneal dystrophy (RBCD), also known as granular corneal dystrophy type III, is a rare form of superficial corneal dystrophy characterized by bilateral symmetrical reticular opacities in the superficial central cornea, with progressive visual impairment.","definition_xrefs":["Orphanet:98961"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial-stromal TGFBI dystrophy","termid":"MONDO:0000764"},{"relation_name":"is_a","term_name":"superficial corneal dystrophy","termid":"MONDO:0020212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Reis-Bucklers corneal dystrophy","secondary_identifiers":["ICD9:371.52","DOID:0060453","OMIM:608470","GARD:9276","MESH:C535476","SCTID:231930000","MEDGEN:83284","UMLS:C0339278"],"synonyms":[{"name":"CDB1","type":"related"},{"name":"CDRB","type":"related"},{"name":"RBCD","type":"exact"},{"name":"Reis Bucklers corneal dystrophy","type":"related"},{"name":"Reis Bucklers dystrophy","type":"related"},{"name":"Reis-Bucklers corneal dystrophy","type":"exact"},{"name":"Reis-Bücklers corneal dystrophy","type":"related"},{"name":"anterior limiting membrane dystrophy type 1","type":"exact"},{"name":"anterior limiting membrane dystrophy type I","type":"exact"},{"name":"atypical granular corneal dystrophy","type":"exact"},{"name":"corneal dystrophy Reis Bucklers type","type":"related"},{"name":"corneal dystrophy geographic","type":"related"},{"name":"corneal dystrophy of Bowman Layer, type 1","type":"related"},{"name":"corneal dystrophy of Bowman layer type 1","type":"exact"},{"name":"corneal dystrophy of Bowman layer type I","type":"exact"},{"name":"corneal dystrophy, REIS-Bucklers type","type":"related"},{"name":"corneal dystrophy, geographic","type":"related"},{"name":"geographic corneal dystrophy","type":"exact"},{"name":"granular corneal dystrophy type 3","type":"exact"},{"name":"granular corneal dystrophy type III","type":"exact"},{"name":"granular corneal dystrophy, type 3","type":"related"},{"name":"superficial granular corneal dystrophy","type":"exact"}],"termid":"MONDO:0012043","xrefs":{"Monarch":{"xref_id":"0012043"}}}


id: GO:0071798
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin D stimulus.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to prostaglandin","termid":"GO:0034694"},{"relation_name":"is_a","term_name":"response to alcohol","termid":"GO:0097305"},{"relation_name":"is_a","term_name":"response to ketone","termid":"GO:1901654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to prostaglandin D","synonyms":[{"name":"response to prostaglandin D stimulus","type":"exact"}],"termid":"GO:0071798"}


id: PBO:0036160
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_transport_along_microtubule_during_vegetative_growth","termid":"PBO:0036160"}


id: GO:0034650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cortisol, the steroid hormone 11-beta-17,21-trihydroxypregn-4-ene-3,20-dione. Cortisol is synthesized from cholesterol in the adrenal gland and controls carbohydrate, fat and protein metabolism and has anti-inflammatory properties.","definition_xrefs":["GOC:BHF","GOC:rl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucocorticoid metabolic process","termid":"GO:0008211"},{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"},{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"},{"relation_name":"is_a","term_name":"tertiary alcohol metabolic process","termid":"GO:1902644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"cortisol metabolic process","synonyms":[{"name":"cortisol metabolism","type":"exact"}],"termid":"GO:0034650"}


id: MONDO:0009962
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Senior-Loken syndrome in which the cause of the disease is a mutation in the NPHP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Senior-Loken syndrome","termid":"MONDO:0017842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0006025"],"is_obsolete":false,"name":"Senior-Loken syndrome 1","secondary_identifiers":["SCTID:236531005","MEDGEN:1639722","ICD9:759.89","UMLS:C4551559","OMIM:266900"],"synonyms":[{"name":"Loken-Senior syndrome","type":"related"},{"name":"NPHP1 Senior-Loken syndrome","type":"exact"},{"name":"SENIOR-Loken syndrome 1","type":"related"},{"name":"SLSN1","type":"related"},{"name":"Senior-Loken syndrome","type":"related"},{"name":"Senior-Loken syndrome 1","type":"exact"},{"name":"Senior-Loken syndrome caused by mutation in NPHP1","type":"exact"},{"name":"Senior-Loken syndrome type 1","type":"exact"},{"name":"juvenile nephronophthisis with Leber amaurosis","type":"related"},{"name":"renal dysplasia and retinal aplasia","type":"related"},{"name":"renal-retinal syndrome","type":"related"},{"name":"senior-loken syndrome-1","type":"exact"}],"termid":"MONDO:0009962","xrefs":{"Monarch":{"xref_id":"0009962"}}}


id: GO:0006198
data:
  {"annotated_genes":["SJAG_02481"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[115824],"is_not":false,"summary":null,"term":"GO:0006198"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide catabolic process","termid":"GO:0009154"},{"relation_name":"is_a","term_name":"cyclic nucleotide catabolic process","termid":"GO:0009214"},{"relation_name":"is_a","term_name":"cAMP metabolic process","termid":"GO:0046058"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02481":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"cAMP catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"3',5' cAMP catabolic process","type":"exact"},{"name":"3',5' cAMP catabolism","type":"exact"},{"name":"3',5'-cAMP catabolic process","type":"exact"},{"name":"3',5'-cAMP catabolism","type":"exact"},{"name":"adenosine 3',5'-cyclophosphate catabolic process","type":"exact"},{"name":"adenosine 3',5'-cyclophosphate catabolism","type":"exact"},{"name":"cAMP breakdown","type":"exact"},{"name":"cAMP catabolism","type":"exact"},{"name":"cAMP degradation","type":"exact"},{"name":"cyclic AMP catabolic process","type":"exact"},{"name":"cyclic AMP catabolism","type":"exact"}],"termid":"GO:0006198","terms_by_termid":{"GO:0006198":null}}


id: PBO:0044674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDHD domain containing 1","termid":"PBO:0044674"}


id: MONDO:0001346
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete distal muscular dystrophy (obsolete MONDO:0001346)","termid":"MONDO:0001346","xrefs":{"Monarch":{"xref_id":"0001346"}}}


id: MONDO:1011281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any achromatopsia that occurs in Rhesus monkey due to a mutation in the PDE6C gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"achromatopsia, non-human animal","termid":"MONDO:1012578"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achromatopsia, PDE6C-related, Rhesus monkey","secondary_identifiers":["OMIA:002163-9544"],"synonyms":[{"name":"cone dystrophy 4, PDE6C-related, Rhesus monkey","type":"related"}],"termid":"MONDO:1011281","xrefs":{"Monarch":{"xref_id":"1011281"}}}


id: GO:0046538
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate; this reaction mechanism uses 2,3-bisphosphoglycerate as a phosphate donor.","definition_xrefs":["GOC:rynl"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity (obsolete GO:0046538)","termid":"GO:0046538"}


id: MONDO:0005540
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rectal adenocarcinoma (obsolete MONDO:0005540)","termid":"MONDO:0005540","xrefs":{"Monarch":{"xref_id":"0005540"}}}


id: PBO:0083532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF SPT4/YGR063C","termid":"PBO:0083532"}


id: FYPO:0008188
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 in the centromere central core is abolished.","direct_ancestors":[{"relation_name":"is_a","term_name":"abolished histone H3-K9 methylation during vegetative growth","termid":"FYPO:0002566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abolished histone H3-K9 trimethylation at centromere central core during vegetative growth","termid":"FYPO:0008188"}


id: GO:0005340
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of nucleotide-sulfate from one side of a membrane to the other.","definition_xrefs":["GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate transmembrane transporter activity","termid":"GO:0015116"},{"relation_name":"is_a","term_name":"organophosphate ester transmembrane transporter activity","termid":"GO:0015605"},{"relation_name":"is_a","term_name":"nucleobase-containing compound transmembrane transporter activity","termid":"GO:0015932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"nucleotide-sulfate transmembrane transporter activity","secondary_identifiers":["GO:0005341"],"synonyms":[{"name":"nucleotide-sulphate transporter activity","type":"exact"}],"termid":"GO:0005340"}


id: MONDO:0007143
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Aortic arch anomaly-peculiar facies-intellectual disability syndrome is a developmental anomaly characterized at birth by the presence of right-sided aortic arch, craniofacial dysmorphism (microcephaly, asymmetric, facial bones, broad forehead, borderline hypertelorism, nasal septum deviation, large nasal cavity, large, posteriorly rotated ears, and microstomia with downturned corners), and intellectual disability. These features were observed in 4 members of one family, involving 2 successive generations, suggesting an autosomal dominant mode of transmission. There have been no further descriptions in the literature since 1968.","definition_xrefs":["Orphanet:1110"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aortic arch anomaly-facial dysmorphism-intellectual disability syndrome","secondary_identifiers":["UMLS:C1862682","GARD:739","MESH:C537785","OMIM:107500","MEDGEN:350734"],"synonyms":[{"name":"aortic arch anomaly - peculiar facies - intellectual disability","type":"related"},{"name":"aortic arch anomaly with peculiar facies and intellectual disability","type":"related"},{"name":"aortic arch anomaly with peculiar facies and mental retardation","type":"related"},{"name":"aortic arch anomaly-peculiar facies-intellectual disability syndrome","type":"related"},{"name":"familial syndrome of right-sided aortic arch, mental deficiency, and facial dysmorphism","type":"related"}],"termid":"MONDO:0007143","xrefs":{"Monarch":{"xref_id":"0007143"}}}


id: PR:Q10434
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An F-actin-capping protein subunit alpha-2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-actin-capping protein subunit alpha (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12B10.07","secondary_identifiers":["UniProtKB:Q10434"],"synonyms":[{"name":"SPAC12B10.07","type":"related"},{"name":"Spom972h-CAPZA2","type":"exact"}],"termid":"PR:Q10434"}


id: PBO:0049262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gasdermin A","termid":"PBO:0049262"}


id: MONDO:1011750
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"follicular dysplasia and interface dermatitis, non-human animal","secondary_identifiers":["OMIA:001369"],"termid":"MONDO:1011750","xrefs":{"Monarch":{"xref_id":"1011750"}}}


id: PBO:0065654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase receptor type E","termid":"PBO:0065654"}


id: MONDO:0016497
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Paraparetic variant of Guillain-Barré syndrome is a rare variant of Guillain-Barré syndrome characterized by isolated leg weakness, areflexia and radicular leg pain that may simulate a cauda equina or spinal cord syndrome. The arms, ocular, facial, and oropharyngeal muscles are spared, and sphincteric function is normal.","definition_xrefs":["Orphanet:231445"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Guillain-Barre syndrome","termid":"MONDO:0016218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"paraparetic variant of Guillain-Barre syndrome","secondary_identifiers":["MEDGEN:1644763","GARD:20615","UMLS:C4707803"],"synonyms":[{"name":"paraparetic variant of GBS","type":"exact"},{"name":"paraparetic variant of Guillain-Barré syndrome","type":"related"}],"termid":"MONDO:0016497","xrefs":{"Monarch":{"xref_id":"0016497"}}}


id: PBO:0027825
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-meroterically_attached_lagging_mitotic_chromosomes","termid":"PBO:0027825"}


id: GO:0038069
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: a phosphorylated MAP kinase + H2O = a MAP kinase + phosphate, where the MAP kinase (MAPK) is part of a MAPK signaling cascade that contributes to cell wall biogenesis.","definition_xrefs":["GOC:signaling"],"gene_count":0,"genotype_count":0,"name":"obsolete MAP kinase phosphatase activity involved in regulation of cell wall biogenesis (obsolete GO:0038069)","synonyms":[{"name":"Mpk1 phosphatase activity","type":"narrow"},{"name":"Slt2 phosphatase activity","type":"narrow"}],"termid":"GO:0038069"}


id: PBO:0043156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 24","termid":"PBO:0043156"}


id: GO:0004412
data:
  {"annotated_genes":["SJAG_03152"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[111421],"is_not":false,"summary":null,"term":"GO:0004412"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-homoserine + NADP+ = L-aspartate-4-semialdehyde + NADPH + H+.","definition_xrefs":["EC:1.1.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03152":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"homoserine dehydrogenase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:15761","MetaCyc:HOMOSERDEHYDROG-RXN"],"termid":"GO:0004412","terms_by_termid":{"GO:0004412":null}}


id: PBO:0035899
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_secretion_during_vegetative_growth","termid":"PBO:0035899"}


id: PBO:0044298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 type A","termid":"PBO:0044298"}


id: MONDO:0017961
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete 46,XX disorder of gonadal development (obsolete MONDO:0017961)","secondary_identifiers":["Orphanet:325055"],"termid":"MONDO:0017961","xrefs":{"Monarch":{"xref_id":"0017961"}}}


id: PATO:0001671
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A distribution which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"increased position","termid":"PATO:0001475"},{"relation_name":"is_a","term_name":"distributed","termid":"PATO:0001566"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased distribution","synonyms":[{"name":"high distribution","type":"exact"}],"termid":"PATO:0001671"}


id: PBO:0011133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydropteroatesynthase/2-amino-4-hydroxy-6-hydro xymethyldihydropteridinediphosphokinase/dihydroneopterin aldolase (predicted)","termid":"PBO:0011133"}


id: PBO:0047202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 217 member B","termid":"PBO:0047202"}


id: MONDO:0007053
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"restless legs syndrome, susceptibility to","termid":"MONDO:0100170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restless legs syndrome, susceptibility to, 1","secondary_identifiers":["MESH:C538443","OMIM:102300","MEDGEN:360293","UMLS:C1876177"],"synonyms":[{"name":"Ekbom syndrome","type":"related"},{"name":"RLS1","type":"related"},{"name":"acromelalgia, hereditary","type":"related"},{"name":"restless legs syndrome, susceptibility to, 1","type":"exact"}],"termid":"MONDO:0007053","xrefs":{"Monarch":{"xref_id":"0007053"}}}


id: MONDO:0015642
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"infantile epilepsy syndrome","termid":"MONDO:0020071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"benign partial infantile seizures","secondary_identifiers":["Orphanet:166311","UMLS:C5680426","GARD:20076","MEDGEN:1842641"],"termid":"MONDO:0015642","xrefs":{"Monarch":{"xref_id":"0015642"}}}


id: GO:0000923
data:
  {"annotated_genes":["SJAG_02761","SJAG_03052","SJAG_07018","SJAG_00856","SJAG_02609","SJAG_03264","SJAG_02737","SJAG_01215","SJAG_02886","SJAG_03835","SJAG_03073","SJAG_01756"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[99570,99860,100471,100910,101807,105909,108296,109057,110025,112203,116376,116626],"is_not":false,"summary":null,"term":"GO:0000923"}]},"cv_name":"cellular_component","definition":"A microtubule organizing center formed by a band of gamma-tubulin that is recruited to a circumferential band of F-actin at the midpoint of a cell and which nucleates microtubules from the cell division site at the end of mitosis.","definition_xrefs":["PMID:11792817"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule organizing center","termid":"GO:0005815"},{"relation_name":"part_of","term_name":"cell division site","termid":"GO:0032153"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00856":null,"SJAG_01215":null,"SJAG_01756":null,"SJAG_02609":null,"SJAG_02737":null,"SJAG_02761":null,"SJAG_02886":null,"SJAG_03052":null,"SJAG_03073":null,"SJAG_03264":null,"SJAG_03835":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0015630"],"is_obsolete":false,"name":"equatorial microtubule organizing center","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"EMTOC","type":"exact"},{"name":"equatorial microtubule organising centre","type":"exact"}],"termid":"GO:0000923","terms_by_termid":{"GO:0000923":null}}


id: PBO:0088775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAN complex (poly(A)-specific ribonuclease) ubiquitin C-terminal hydrolase subunit Pan2","termid":"PBO:0088775"}


id: PBO:0045619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 31 (pseudogene)","termid":"PBO:0045619"}


id: PBO:0065004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PR/SET domain 9","termid":"PBO:0065004"}


id: FYPO:0003385
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of cadmium ions measured in a cell is higher than normal during a cellular response to cadmium ion.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular cadmium level during cellular response to cadmium ion","synonyms":[{"name":"increased cadmium accumulation during cellular response to cadmium","type":"related"},{"name":"increased cellular cadmium accumulation during cellular response to cadmium","type":"related"},{"name":"increased cellular cadmium ion level during cellular response to cadmium","type":"exact"},{"name":"increased cellular cadmium level during cellular response to cadmium","type":"exact"},{"name":"increased cellular cadmium level during cellular response to cadmium during mitotic cell cycle","type":"related"},{"name":"increased cellular cadmium level during cellular response to cadmium during vegetative growth","type":"exact"}],"termid":"FYPO:0003385"}


id: GO:0080118
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a brassinosteroid + 3'-phosphoadenosine-5'-phosphosulfate = sulfated brassinosteroid + adenosine-3',5'-diphosphate. This reaction is the transfer of a sulfate group to the hydroxyl group of a brassinosteroid acceptor, producing the sulfated brassinosteroid derivative.","definition_xrefs":["PMID:10409637","PMID:17039368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016782","GO:0003824"],"is_obsolete":false,"name":"brassinosteroid sulfotransferase activity","termid":"GO:0080118"}


id: PBO:0000957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-8 sterol isomerase Erg2","termid":"PBO:0000957"}


id: GO:0072159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of epithelial cells within a renal tubule that contributes to proximal tubule morphogenesis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration involved in nephron tubule morphogenesis","termid":"GO:0072155"},{"relation_name":"part_of","term_name":"proximal tubule morphogenesis","termid":"GO:0072158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell migration involved in proximal tubule morphogenesis","termid":"GO:0072159"}


id: PBO:0064367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphomannomutase 1","termid":"PBO:0064367"}


id: PBO:0077902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tryptase gamma 1","termid":"PBO:0077902"}


id: MONDO:0013844
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"stutter disorder","termid":"MONDO:0000723"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stuttering, familial persistent, 4","secondary_identifiers":["OMIM:614668","UMLS:C3553403","MEDGEN:766317"],"synonyms":[{"name":"STUT4","type":"exact"},{"name":"stuttering, familial persistent, 4","type":"exact"}],"termid":"MONDO:0013844","xrefs":{"Monarch":{"xref_id":"0013844"}}}


id: GO:0080065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A lipid oxidation process proceeding through a series of three successive monooxygenations of the alpha methyl group on the C4 carbon (CH3 to CH2OH to CHO to COOH) and resulting in this overall reaction: 4-alpha-methyl-delta7-sterol + 3 NADPH + 3 H+ + 3 O2 = 4-alpha-carboxy,delta7-sterol + 3 NADP+ + 3 H2O.","definition_xrefs":["PMID:14653780","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid oxidation","termid":"GO:0034440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"4-alpha-methyl-delta7-sterol oxidation","synonyms":[{"name":"4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity","type":"related"}],"termid":"GO:0080065"}


id: MONDO:0014251
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melioidosis, susceptibility to","secondary_identifiers":["UMLS:C3809925","MEDGEN:816255","OMIM:615557"],"synonyms":[{"name":"melioidosis, resistance to","type":"related"},{"name":"melioidosis, susceptibility to","type":"exact"},{"name":"susceptibility to melioidosis","type":"related"}],"termid":"MONDO:0014251","xrefs":{"Monarch":{"xref_id":"0014251"}}}


id: PBO:0050255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 33","termid":"PBO:0050255"}


id: PBO:0073782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 5 member 4","termid":"PBO:0073782"}


id: GO:0062228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of adult somatic muscle development.","definition_xrefs":["PMID:25758712","PMID:16643882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of somatic muscle development","termid":"GO:0062225"},{"relation_name":"is_a","term_name":"regulation of adult somatic muscle development","termid":"GO:0062226"},{"relation_name":"negatively_regulates","term_name":"adult somatic muscle development","termid":"GO:0007527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of adult somatic muscle development","termid":"GO:0062228"}


id: GO:0048541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of Peyer's patches over time, from their formation to the mature structure. Peyer's patches are typically found as nodules associated with gut epithelium with distinct internal structures including B- and T-zones for the activation of lymphocytes.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucosa-associated lymphoid tissue development","termid":"GO:0048537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Peyer's patch development","synonyms":[{"name":"GALT development","type":"related"},{"name":"gut-associated lymphoid tissue development","type":"related"}],"termid":"GO:0048541"}


id: GO:0050126
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-carbamoylputrescine + H2O + 2 H+ = CO2 + NH4 + putrescine.","definition_xrefs":["EC:3.5.1.53","RHEA:22284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"N-carbamoylputrescine amidase activity","secondary_identifiers":["KEGG_REACTION:R01152","MetaCyc:N-CARBAMOYLPUTRESCINE-AMIDASE-RXN"],"synonyms":[{"name":"N-carbamoylputrescine amidohydrolase activity","type":"related"},{"name":"NCP","type":"related"},{"name":"carbamoylputrescine hydrolase activity","type":"related"}],"termid":"GO:0050126"}


id: MONDO:0017064
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spina bifida aperta","termid":"MONDO:0017062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"thoracolumbosacral spina bifida aperta","secondary_identifiers":["icd11.foundation:2108603667","Orphanet:268384","MEDGEN:1732917","GARD:20953","UMLS:C5439435"],"termid":"MONDO:0017064","xrefs":{"Monarch":{"xref_id":"0017064"}}}


id: MONDO:1011795
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"masticatory muscle myositis, non-human animal","secondary_identifiers":["OMIA:001134"],"termid":"MONDO:1011795","xrefs":{"Monarch":{"xref_id":"1011795"}}}


id: FYPO:0001648
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the import of one or more amino acids into the cell is abnormal when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal amino acid import","termid":"FYPO:0001057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal amino acid import during nitrogen starvation","synonyms":[{"name":"abnormal amino acid import across plasma membrane during nitrogen starvation","type":"exact"},{"name":"abnormal amino acid import during nitrogen depletion","type":"exact"},{"name":"abnormal amino acid import during nitrogen deprivation","type":"exact"},{"name":"abnormal amino acid import into cell during nitrogen starvation","type":"exact"},{"name":"abnormal amino acid uptake during nitrogen starvation","type":"exact"}],"termid":"FYPO:0001648"}


id: GO:0033974
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of mixed phospho-anhydride bonds.","definition_xrefs":["EC:3.6.1.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides","termid":"GO:0016818"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"nucleoside phosphoacylhydrolase activity","secondary_identifiers":["MetaCyc:3.6.1.24-RXN"],"synonyms":[{"name":"nucleoside-5'-phosphoacylate acylhydrolase activity","type":"related"}],"termid":"GO:0033974"}


id: MONDO:0012280
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A multiple malformation syndrome characterized by Hirschprung megacolon with microcephaly, hypertelorism, submucous cleft palate, short stature and learning disability.","definition_xrefs":["Orphanet:66629"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"intestinal motility disease","termid":"MONDO:0021189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"Goldberg-Shprintzen syndrome","secondary_identifiers":["GARD:9849","OMIM:609460","MEDGEN:332131","UMLS:C1836123","DOID:0060481","SCTID:717822006","MESH:C537279"],"synonyms":[{"name":"GOSHS","type":"exact"},{"name":"Goldberg-Shprintzen megacolon syndrome","type":"exact"},{"name":"Goldberg-Shprintzen syndrome","type":"exact"},{"name":"megacolon-microcephaly syndrome","type":"exact"}],"termid":"MONDO:0012280","xrefs":{"Monarch":{"xref_id":"0012280"}}}


id: MOD:00217
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to O4-arabinosyl-L-hydroxyproline.","definition_xrefs":["PubMed:666730","PubMed:7852316","DeltaMass:0","RESID:AA0212","Unimod:408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosylated residue","termid":"MOD:00396"},{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O4-arabinosyl-L-hydroxyproline","synonyms":[{"name":"(2S,4R)-4-(beta-L-arabinofuranosyloxy)pyrrolidine-2-carboxylic acid","type":"exact"},{"name":"4-(beta-L-arabinofuranosyloxy)proline","type":"exact"},{"name":"4-Glycosyloxy- (pentosyl,C5) (of Proline)","type":"exact"},{"name":"Glycosyl","type":"related"},{"name":"O4-arabinosyl-L-hydroxyproline","type":"exact"},{"name":"O4-glycosyl-hydroxyproline","type":"exact"},{"name":"OAra4HyPro","type":"exact"},{"name":"beta-arabinofuranosyl-4-hydroxyproline","type":"exact"},{"name":"glycosyl-L-hydroxyproline","type":"related"}],"termid":"MOD:00217"}


id: GO:0140718
data:
  {"annotated_genes":["SJAG_02778","SJAG_02401","SJAG_00769","SJAG_04039","SJAG_01599","SJAG_04574","SJAG_02622","SJAG_01075","SJAG_02723","SJAG_03997","SJAG_01331","SJAG_04768","SJAG_00934","SJAG_03982","SJAG_01579","SJAG_03664","SJAG_02382","SJAG_03624","SJAG_04186","SJAG_03844","SJAG_01867"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93583,102707],"is_not":false,"summary":null,"term":"GO:0140718"},{"annotations":[106119],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0061188"},{"annotations":[91582,103576,112738,113862,111557,107624,89562],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000183"},{"annotations":[91372,117195,117554,96692,99796],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902801"},{"annotations":[87016,117557,109940,90308,115982,111559,103675],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902794"},{"annotations":[105778],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902795"}]},"cv_name":"biological_process","definition":"The compaction of chromatin into a conformation that is refractory to transcription but that can be converted to euchromatin and allow transcription in specific contexts. These can be temporal (e.g., developmental states or specific cell-cycle stages), spatial (e.g., nuclear localization changes from the center to the periphery or vice versa due to exogenous factors/signals), or parental/heritable (e.g., monoallelic gene expression). In metazoa, this involves the methylation of histone H3K27.","definition_xrefs":["PMID:17936700"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochromatin formation","termid":"GO:0031507"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00769":null,"SJAG_00934":null,"SJAG_01075":null,"SJAG_01331":null,"SJAG_01579":null,"SJAG_01599":null,"SJAG_01867":null,"SJAG_02382":null,"SJAG_02401":null,"SJAG_02622":null,"SJAG_02723":null,"SJAG_02778":null,"SJAG_03624":null,"SJAG_03664":null,"SJAG_03844":null,"SJAG_03982":null,"SJAG_03997":null,"SJAG_04039":null,"SJAG_04186":null,"SJAG_04574":null,"SJAG_04768":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006325"],"is_obsolete":false,"name":"facultative heterochromatin formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"fHC assembly","type":"exact"},{"name":"facultative heterochromatin assembly","type":"exact"}],"termid":"GO:0140718","terms_by_termid":{"GO:0000183":null,"GO:0061188":null,"GO:0140718":null,"GO:1902794":null,"GO:1902795":null,"GO:1902801":null}}


id: GO:0075341
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A nuclear body that reacts against SP100 auto-antibodies (PML = promyelocytic leukemia) located within a cell of a host organism.","definition_xrefs":["GOC:BHF","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell nuclear part","termid":"GO:0044094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell PML body","synonyms":[{"name":"host cell PML NB","type":"exact"},{"name":"host cell PML nuclear body","type":"exact"}],"termid":"GO:0075341"}


id: PBO:0058343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4716","termid":"PBO:0058343"}


id: GO:0005981
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of glycogen.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"is_a","term_name":"regulation of glycogen metabolic process","termid":"GO:0070873"},{"relation_name":"regulates","term_name":"glycogen catabolic process","termid":"GO:0005980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091","GO:0005975"],"is_obsolete":false,"name":"regulation of glycogen catabolic process","synonyms":[{"name":"regulation of glycogen breakdown","type":"exact"},{"name":"regulation of glycogen catabolism","type":"exact"},{"name":"regulation of glycogen degradation","type":"exact"},{"name":"regulation of glycogenolysis","type":"exact"}],"termid":"GO:0005981"}


id: GO:0018571
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-dihydroxy-p-cumate + O2 = 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate.","definition_xrefs":["RHEA:42568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"2,3-dihydroxy-p-cumate dioxygenase activity","secondary_identifiers":["MetaCyc:RXN-666","UM-BBD_reactionID:r0397"],"synonyms":[{"name":"2,3-dihydroxy-p-cumate 3,4-dioxygenase","type":"exact"},{"name":"2,3-dihydroxy-p-cumate-3,4-dioxygenase","type":"exact"}],"termid":"GO:0018571"}


id: PR:P11620
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ras-related protein Rab-1B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03481"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein ypt1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1703.10","secondary_identifiers":["UniProtKB:P11620"],"synonyms":[{"name":"Spom972h-RAB1B","type":"exact"}],"termid":"PR:P11620"}


id: PATO:0000179
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000179 body position (obsolete PATO:0000179)","termid":"PATO:0000179"}


id: MONDO:0019477
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete angioimmunoblastic T-cell lymphoma (obsolete MONDO:0019477)","termid":"MONDO:0019477","xrefs":{"Monarch":{"xref_id":"0019477"}}}


id: PBO:0062759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily N member 4","termid":"PBO:0062759"}


id: GO:0008686
data:
  {"annotated_genes":["SJAG_00480"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[106445],"is_not":false,"summary":null,"term":"GO:0008686"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H+.","definition_xrefs":["EC:4.1.99.12","RHEA:18457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00480":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3,4-dihydroxy-2-butanone-4-phosphate synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R07281","MetaCyc:DIOHBUTANONEPSYN-RXN"],"termid":"GO:0008686","terms_by_termid":{"GO:0008686":null}}


id: GO:0070400
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a D-alanyl ester of teichoic acid. Alanylation of teichoic acids modulates the properties of the bacterial cell wall and modulates the inflammatory properties of the teichoic acid.","definition_xrefs":["GOC:add","PMID:14665680","PMID:16020688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"teichoic acid biosynthetic process","termid":"GO:0019350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0044085","GO:0071554"],"is_obsolete":false,"name":"teichoic acid D-alanylation","synonyms":[{"name":"teichoic acid alanylation","type":"exact"}],"termid":"GO:0070400"}


id: GO:0075108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont stops, prevents, or reduces the frequency, rate or extent of the host adenylate cyclase activity, which catalyze the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by symbiont of host adenylate cyclase activity (obsolete GO:0075108)","synonyms":[{"name":"Negative regulation by symbiont of host 3',5'-cyclic AMP synthetase activity","type":"exact"},{"name":"Negative regulation by symbiont of host ATP diphosphate-lyase (cyclizing ; 3',5'-cyclic-AMP-forming) activity","type":"exact"},{"name":"Negative regulation by symbiont of host ATP diphosphate-lyase (cyclizing) activity","type":"exact"},{"name":"Negative regulation by symbiont of host ATP pyrophosphate-lyase activity","type":"exact"},{"name":"Negative regulation by symbiont of host adenyl cyclase activity","type":"exact"},{"name":"Negative regulation by symbiont of host adenylyl cyclase activity","type":"exact"},{"name":"Negative regulation by symbiont of host adenylylcyclase activity","type":"exact"},{"name":"Negative regulation by symbiont of host cAMP generating peptide activity","type":"related"}],"termid":"GO:0075108"}


id: GO:0061691
data:
  {"annotated_genes":["SJAG_01216","SJAG_04953","SJAG_00141","SJAG_04823","SJAG_01199","SJAG_02515"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99493,117725,94696,116810,104511,108291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061692"}]},"cv_name":"biological_process","definition":"Any process that reduces or removes the toxicity of hydrogen peroxide. These include transport of hydrogen peroxide away from sensitive areas and to compartments or complexes whose purpose is sequestration.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrogen peroxide metabolic process","termid":"GO:0042743"},{"relation_name":"is_a","term_name":"detoxification of inorganic compound","termid":"GO:0061687"},{"relation_name":"part_of","term_name":"response to hydrogen peroxide","termid":"GO:0042542"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_02515":null,"SJAG_04823":null,"SJAG_04953":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0098754"],"is_obsolete":false,"name":"detoxification of hydrogen peroxide","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061691","terms_by_termid":{"GO:0061692":null}}


id: GO:1901449
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of response to butan-1-ol.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to alcohol","termid":"GO:1901420"},{"relation_name":"is_a","term_name":"regulation of response to butan-1-ol","termid":"GO:1901448"},{"relation_name":"negatively_regulates","term_name":"response to butan-1-ol","termid":"GO:1901422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of response to butan-1-ol","synonyms":[{"name":"down regulation of response to butan-1-ol","type":"exact"},{"name":"down-regulation of response to butan-1-ol","type":"exact"},{"name":"downregulation of response to butan-1-ol","type":"exact"},{"name":"inhibition of response to butan-1-ol","type":"narrow"}],"termid":"GO:1901449"}


id: MONDO:0005658
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with astrovirus, causing gastroenteritis in human infants, calves, lambs, and piglets.","definition_xrefs":["MESH:D019350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary viral infectious disease","termid":"MONDO:0100329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Astroviridae infectious disease","secondary_identifiers":["UMLS:C0376550","MEDGEN:84000"],"termid":"MONDO:0005658","xrefs":{"Monarch":{"xref_id":"0005658"}}}


id: PBO:0088921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIH complex subunit Tfb5","termid":"PBO:0088921"}


id: SO:0001106
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of five consecutive residues and two H-bonds in which: Residue(i) is Aspartate or Asparagine (Asx), side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3), main-chain CO of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4).","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_secondary_structure","termid":"SO:0001078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"asx_motif","secondary_identifiers":["BS:00202"],"synonyms":[{"name":"asx motif","type":"exact"}],"termid":"SO:0001106"}


id: PBO:0000132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELLA family acetyltransferase (predicted)","termid":"PBO:0000132"}


id: PR:G2TRK0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC343.21 gene.","definition_xrefs":["UniProtKB:G2TRK0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transmembrane protein C343.21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC343.21","synonyms":[{"name":"Spom972h-SPAC343.21","type":"exact"}],"termid":"PR:G2TRK0"}


id: PBO:0046079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A1 pseudogene 4","termid":"PBO:0046079"}


id: GO:0048759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a vessel member cell. A vessel member cell is one of the components of a vessel in the xylem. It is a dead cell with the wall between adjacent members being variously perforated and the walls that persist variously thickened.","definition_xrefs":["GOC:jid","PO:0002003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tracheary element differentiation","termid":"GO:1905177"},{"relation_name":"part_of","term_name":"xylem development","termid":"GO:0010089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"xylem vessel member cell differentiation","synonyms":[{"name":"vessel element cell differentiation","type":"broad"},{"name":"vessel member cell differentiation","type":"broad"}],"termid":"GO:0048759"}


id: RO:0003308
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship between an entity and a condition (phenotype or disease) with which it exhibits a statistical dependence relationship.","direct_ancestors":[{"relation_name":"is_a","term_name":"correlated_with","termid":"RO:0002610"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"correlated_with_condition","termid":"RO:0003308"}


id: FYPO:0002678
data:
  {"alleles_by_uniquename":{"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_04551:allele-4":{"allele_type":"partial_amino_acid_deletion","description":"Pmk1 from S. pombe with deleted residues 82-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sp(delta82-105)","uniquename":"SJAG_04551:allele-4"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[118842,118850],"is_not":false,"summary":null,"term":"FYPO:0002678"},{"annotations":[118849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002033"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the phosphorylation of one or more specific proteins, or of specific protein sites, does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein phosphorylation","termid":"FYPO:0002677"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_04551":null},"genotype_count":2,"genotypes_by_uniquename":{"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein phosphorylation","references_by_uniquename":{"PMID:34198697":null},"single_locus_annotated_genes":["SJAG_04551","SJAG_00610"],"single_locus_genotype_uniquenames":["pck2delta","Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"protein phosphorylation abolished","type":"exact"}],"termid":"FYPO:0002678","terms_by_termid":{"FYECO:0000207":null,"FYPO:0002033":null,"FYPO:0002678":null}}


id: GO:0102144
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: carboxyspermidine + H2O + NADP = L-aspartic acid 4-semialdehyde betaine + 1,4-butanediammonium + NADPH + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete carboxyspermidine dehydrogenase II activity (obsolete GO:0102144)","termid":"GO:0102144"}


id: MONDO:0007596
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete factor VIII deficiency (obsolete MONDO:0007596)","termid":"MONDO:0007596","xrefs":{"Monarch":{"xref_id":"0007596"}}}


id: MONDO:1011706
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atypical thrombasthenia, non-human animal","secondary_identifiers":["OMIA:002272"],"termid":"MONDO:1011706","xrefs":{"Monarch":{"xref_id":"1011706"}}}


id: PBO:0056127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LysM domain containing 4","termid":"PBO:0056127"}


id: MONDO:0032932
data:
  {"annotated_genes":["SJAG_00522"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85028],"is_not":false,"summary":null,"term":"MONDO:0032932"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome","termid":"MONDO:0018158"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00522":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial DNA depletion syndrome 18","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070449","UMLS:C5394140","OMIM:618811","MEDGEN:1713890"],"synonyms":[{"name":"MITOCHONDRIAL DNA DEPLETION SYNDROME 18","type":"related"},{"name":"MTDPS18","type":"related"}],"termid":"MONDO:0032932","terms_by_termid":{"MONDO:0032932":null},"xrefs":{"Monarch":{"xref_id":"0032932"}}}


id: MONDO:0001515
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"corneal disorder","termid":"MONDO:0000942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"corneal degeneration","secondary_identifiers":["DOID:1237","ICD9:371.4","ICD9:371.40","UMLS:C0155118","SCTID:111521006","MEDGEN:56352","icd11.foundation:699504167","ICD10CM:H18.4","ICD9:371.49"],"termid":"MONDO:0001515","xrefs":{"Monarch":{"xref_id":"0001515"}}}


id: FYPO:0006751
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 4 of histone H3 in heterochromatin at subtelomeric regions occurs to a greater extent than normal.","definition_xrefs":["PMID:29632066","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone methylation during vegetative growth","termid":"FYPO:0000869"},{"relation_name":"is_a","term_name":"abnormal histone H3-K4 methylation during vegetative growth","termid":"FYPO:0002330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0002274","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H3-K4 trimethylation at subtelomeric heterochromatin during vegetative growth","synonyms":[{"name":"increased histone H3 K4 trimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"increased histone H3-K4 trimethylation at subtelomeres during vegetative growth","type":"exact"},{"name":"increased histone H3-K4 trimethylation at subtelomeric heterochromatin during mitotic cell cycle","type":"related"},{"name":"increased histone H3-K4 trimethylation at telomeric heterochromatin during vegetative growth","type":"related"},{"name":"increased histone H3K4me3 at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K4 trimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0006751"}


id: PBO:0063589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal biogenesis factor 5","termid":"PBO:0063589"}


id: PBO:0030172
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_resolution_of_meiotic_recombination_intermediates_with_crossover_formation","termid":"PBO:0030172"}


id: PATO:0001162
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concentration which is higher relative to the normal or average.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"concentrated","termid":"PATO:0001159"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased concentration","synonyms":[{"name":"high concentration","type":"exact"}],"termid":"PATO:0001162"}


id: FYPO:0006391
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the cell does not contain a detectable meiotic spindle during one or both meiotic nuclear divisions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic spindle","termid":"FYPO:0000734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000120"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000120","FYPO:0000054","FYPO:0002399"],"is_obsolete":false,"name":"meiotic spindle absent from cell during meiosis","synonyms":[{"name":"absent meiotic spindle during meiosis","type":"exact"},{"name":"meiotic spindle absent from cell during meiotic nuclear division","type":"exact"},{"name":"spindle absent from cell during meiosis","type":"exact"}],"termid":"FYPO:0006391"}


id: MONDO:0007445
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse palmoplantar keratoderma","termid":"MONDO:0017666"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"},{"relation_name":"is_a","term_name":"hyperpigmentation of the skin","termid":"MONDO:0019289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"dermatopathia pigmentosa reticularis","secondary_identifiers":["SCTID:239088003","MEDGEN:98037","MESH:C535374","UMLS:C0406778","OMIM:125595","Orphanet:86920","GARD:8550","DOID:0111342"],"synonyms":[{"name":"DPR","type":"related"},{"name":"dermatopathia pigmentosa reticularis","type":"exact"}],"termid":"MONDO:0007445","xrefs":{"Monarch":{"xref_id":"0007445"}}}


id: GO:0003958
data:
  {"annotated_genes":["SJAG_04270","SJAG_00972","SJAG_04397"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87739,92699,107178],"is_not":false,"summary":null,"term":"GO:0003958"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NADPH + H+ + n oxidized hemoprotein = NADP+ + n reduced hemoprotein.","definition_xrefs":["EC:1.6.2.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor","termid":"GO:0016653"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00972":null,"SJAG_04270":null,"SJAG_04397":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"NADPH-hemoprotein reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-76494","MetaCyc:NADPH--FERRIHEMOPROTEIN-REDUCTASE-RXN","RHEA:24040"],"synonyms":[{"name":"CPR activity","type":"related"},{"name":"FAD-cytochrome c reductase activity","type":"related"},{"name":"NADP--cytochrome c reductase activity","type":"narrow"},{"name":"NADP--cytochrome reductase activity","type":"narrow"},{"name":"NADPH--cytochrome P450 oxidoreductase activity","type":"narrow"},{"name":"NADPH--cytochrome P450 reductase activity","type":"narrow"},{"name":"NADPH--cytochrome c oxidoreductase activity","type":"narrow"},{"name":"NADPH--cytochrome c reductase activity","type":"narrow"},{"name":"NADPH--ferricytochrome c oxidoreductase activity","type":"narrow"},{"name":"NADPH--ferrihemoprotein reductase activity","type":"narrow"},{"name":"NADPH-cytochrome P-450 oxidoreductase activity","type":"related"},{"name":"NADPH-cytochrome p-450 reductase activity","type":"related"},{"name":"NADPH-dependent cytochrome c reductase activity","type":"narrow"},{"name":"NADPH-ferrihemoprotein reductase activity","type":"exact"},{"name":"NADPH:P-450 reductase activity","type":"related"},{"name":"NADPH:P450 reductase activity","type":"narrow"},{"name":"NADPH:cytochrome P450 reductase activity","type":"exact"},{"name":"NADPH:cytochrome c reductase activity","type":"exact"},{"name":"NADPH:ferrihemoprotein oxidoreductase activity","type":"related"},{"name":"NADPH:hemoprotein oxidoreductase activity","type":"related"},{"name":"POR","type":"related"},{"name":"TPNH(2) cytochrome c reductase activity","type":"narrow"},{"name":"TPNH-cytochrome c reductase activity","type":"narrow"},{"name":"TPNH2 cytochrome c reductase activity","type":"related"},{"name":"aldehyde reductase (NADPH-dependent) activity","type":"related"},{"name":"cytochrome P-450 reductase activity","type":"related"},{"name":"cytochrome P450 reductase activity","type":"narrow"},{"name":"cytochrome c reductase (reduced nicotinamide adenine dinucleotide phosphate, NADPH, NADPH-dependent) activity","type":"narrow"},{"name":"dihydroxynicotinamide adenine dinucleotide phosphate-cytochrome c reductase activity","type":"narrow"},{"name":"ferrihemoprotein P-450 reductase activity","type":"related"},{"name":"reduced nicotinamide adenine dinucleotide phosphate-cytochrome c reductase activity","type":"narrow"},{"name":"reductase, cytochrome c (reduced nicotinamide adenine dinucleotide phosphate) activity","type":"narrow"}],"termid":"GO:0003958","terms_by_termid":{"GO:0003958":null}}


id: GO:0014832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the urinary bladder. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The urinary bladder is a musculomembranous sac along the urinary tract.","definition_xrefs":["GOC:mr","GOC:mtg_muscle","PMID:11768524","PMID:538956","PMID:18276178"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary tract smooth muscle contraction","termid":"GO:0014848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"urinary bladder smooth muscle contraction","termid":"GO:0014832"}


id: FYPO:0000873
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 9 of histone H3 occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000866"},{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000871"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002494","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation during vegetative growth","synonyms":[{"name":"increased histone H3 K9 dimethylation during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 dimethylation during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0000873"}


id: MONDO:0013815
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial bent bone dysplasia syndrome","termid":"MONDO:0031615"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bent bone dysplasia syndrome 1","secondary_identifiers":["MEDGEN:482877","OMIM:614592","UMLS:C3281247","GARD:10965","Orphanet:313855"],"synonyms":[{"name":"BBDS","type":"related"},{"name":"FGFR2-related bent bone dysplasia","type":"exact"},{"name":"bent bone dysplasia (BBD)-FGFR2 type","type":"related"},{"name":"bent bone dysplasia syndrome","type":"related"},{"name":"perinatal lethal bent bone dysplasia","type":"exact"}],"termid":"MONDO:0013815","xrefs":{"Monarch":{"xref_id":"0013815"}}}


id: MONDO:0001725
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A chronic and progressive inflammatory process that affects the glans penis and the foreskin. It presents with white atrophic patches in the glans of penis and foreskin and it is often associated with the development of a sclerotic, whitish ring in the tip of the foreskin that may lead to phimosis. It is also known as lichen sclerosus of the penis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"balanitis","termid":"MONDO:0006672"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"balanitis xerotica obliterans","secondary_identifiers":["SCTID:198033005","MESH:D052798","ICD9:607.81","MEDGEN:57542","DOID:13477","NCIT:C3523","UMLS:C0152460"],"synonyms":[{"name":"lichen Sclerosus of penis","type":"exact"},{"name":"lichen Sclerosus of the penis","type":"exact"},{"name":"penile lichen Sclerosus","type":"exact"}],"termid":"MONDO:0001725","xrefs":{"Monarch":{"xref_id":"0001725"}}}


id: GO:0021520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway.","definition_xrefs":["GOC:dgh","GOC:cls","GOC:dph","GO_REF:0000021","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron fate specification","termid":"GO:0048665"},{"relation_name":"part_of","term_name":"spinal cord motor neuron differentiation","termid":"GO:0021522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spinal cord motor neuron cell fate specification","termid":"GO:0021520"}


id: _global:indirectly_regulates
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.","direct_ancestors":[{"relation_name":"is_a","term_name":"indirectly_causally_upstream_of","termid":"_global:indirectly_causally_upstream_of"},{"relation_name":"is_a","term_name":"regulates","termid":"_global:regulates"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"indirectly_regulates","secondary_identifiers":["RO:0012012"],"termid":"_global:indirectly_regulates"}


id: MONDO:0004471
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The inflammation of one or more joints caused by a bacterial infection within the joint space. Symptoms include pain, stiffness, and decreased range of motion in the affected joint.","definition_xrefs":["NCIT:C26699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"},{"relation_name":"is_a","term_name":"infective arthritis","termid":"MONDO:0042485"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bacterial arthritis","secondary_identifiers":["ICD9:711.90","ICD9:711.94","ICD9:711.97","ICD9:711.40","MEDGEN:308434","ICD9:711.96","NANDO:2200437","ICD9:711.9","ICD9:711.0","MESH:D001170","EFO:1001351","SCTID:48245008","ICD9:711.92","UMLS:C1692886","DOID:813","ICD9:711.91","ICD9:711.93","ICD9:711.95"],"synonyms":[{"name":"infectious arthritis","type":"broad"},{"name":"pyogenic arthritis","type":"exact"},{"name":"septic arthritis","type":"exact"}],"termid":"MONDO:0004471","xrefs":{"Monarch":{"xref_id":"0004471"}}}


id: PBO:0090050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal peptidase subunit Sec11","termid":"PBO:0090050"}


id: PBO:0074578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Smad nuclear interacting protein 1","termid":"PBO:0074578"}


id: PBO:0084835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein that may have a role in phospholipid metabolism; inner membrane protein with similarity to Mdm32p; required for normal mitochondrial morphology and inheritance; interacts genetically with MMM1, MMM2, MDM10, MDM12, and MDM34","termid":"PBO:0084835"}


id: MONDO:0006172
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign melanocytic neoplasm that arises from the conjunctiva.","definition_xrefs":["NCIT:C4551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melanocytic nevus","termid":"MONDO:0005073"},{"relation_name":"is_a","term_name":"benign conjunctival neoplasm","termid":"MONDO:0006105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005093"],"is_obsolete":false,"name":"conjunctival nevus","secondary_identifiers":["EFO:1000205","SCTID:255006004","UMLS:C0346363","DOID:0050906","MEDGEN:83422"],"synonyms":[{"name":"Nevus of conjunctiva","type":"exact"},{"name":"Nevus of the conjunctiva","type":"exact"},{"name":"conjunctival nevus","type":"exact"}],"termid":"MONDO:0006172","xrefs":{"Monarch":{"xref_id":"0006172"}}}


id: PBO:0075486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPATA31 subfamily D member 4","termid":"PBO:0075486"}


id: GO:0007323
data:
  {"annotated_genes":["SJAG_00730","SJAG_04398","SJAG_05016","SJAG_04923"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89078,100887],"is_not":false,"summary":null,"term":"GO:0007323"},{"annotations":[92685,87352],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071432"}]},"cv_name":"biological_process","definition":"The generation of a mature, active peptide pheromone via processes unique to its processing and modification. An example of this process is found in Saccharomyces cerevisiae.","definition_xrefs":["GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00730":null,"SJAG_04398":null,"SJAG_04923":null,"SJAG_05016":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051604","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"peptide pheromone maturation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0007324","GO:0007326","GO:0046613"],"synonyms":[{"name":"pheromone processing","type":"exact"}],"termid":"GO:0007323","terms_by_termid":{"GO:0007323":null,"GO:0071432":null}}


id: GO:0097172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving N-acetylmuramic acid (MurNAc), a monosaccharide derivative of N-acetylglucosamine.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"N-acetylmuramic acid metabolic process","synonyms":[{"name":"N-acetylmuramate metabolic process","type":"exact"},{"name":"N-acetylmuramate metabolism","type":"exact"},{"name":"N-acetylmuramic acid metabolism","type":"exact"}],"termid":"GO:0097172"}


id: PBO:0089033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial Rieske ISP assembly ATPase Bcs1","termid":"PBO:0089033"}


id: GO:0070255
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the regulated release of mucus from a cell or a tissue.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of body fluid levels","termid":"GO:0050878"},{"relation_name":"is_a","term_name":"regulation of secretion","termid":"GO:0051046"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"mucus secretion","termid":"GO:0070254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of mucus secretion","synonyms":[{"name":"regulation of mucus production","type":"exact"}],"termid":"GO:0070255"}


id: GO:0051276
data:
  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id: PR:O14200
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pxa1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PXA domain protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC5D6.07c","synonyms":[{"name":"Spom972h-pxa1","type":"exact"}],"termid":"PR:O14200"}


id: PBO:0034467
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_centromere_during_vegetative_growth","termid":"PBO:0034467"}


id: PBO:0076125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine/tyrosine kinase 1","termid":"PBO:0076125"}


id: GO:0051199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a prosthetic group.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of prosthetic group metabolic process (obsolete GO:0051199)","synonyms":[{"name":"regulation of coenzyme and prosthetic group metabolic process","type":"broad"},{"name":"regulation of coenzyme and prosthetic group metabolism","type":"broad"},{"name":"regulation of prosthetic group metabolism","type":"exact"}],"termid":"GO:0051199"}


id: GO:1900438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of filamentous growth of a population of unicellular organisms in response to chemical stimulus.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"negative regulation of filamentous growth of a population of unicellular organisms","termid":"GO:1900429"},{"relation_name":"is_a","term_name":"regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus","termid":"GO:1900437"},{"relation_name":"negatively_regulates","term_name":"filamentous growth of a population of unicellular organisms in response to chemical stimulus","termid":"GO:0036171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus","synonyms":[{"name":"down regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus","type":"exact"},{"name":"down-regulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus","type":"exact"},{"name":"downregulation of filamentous growth of a population of unicellular organisms in response to chemical stimulus","type":"exact"},{"name":"inhibition of filamentous growth of a population of unicellular organisms in response to chemical stimulus","type":"narrow"}],"termid":"GO:1900438"}


id: PBO:0062122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily C member 50 pseudogene","termid":"PBO:0062122"}


id: MONDO:0017519
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"symbrachydactyly of hands and feet","termid":"MONDO:0015516"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"symbrachydactyly of hand and foot, unilateral","secondary_identifiers":["Orphanet:295136"],"termid":"MONDO:0017519","xrefs":{"Monarch":{"xref_id":"0017519"}}}


id: PBO:0063602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal biogenesis factor 14","termid":"PBO:0063602"}


id: GO:0033972
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: amidinoproclavaminate + H2O = proclavaminate + urea.","definition_xrefs":["EC:3.5.3.22","RHEA:17001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016810","GO:0016787"],"is_obsolete":false,"name":"proclavaminate amidinohydrolase activity","secondary_identifiers":["MetaCyc:3.5.3.22-RXN","KEGG_REACTION:R05357"],"synonyms":[{"name":"PAH","type":"related"},{"name":"proclavaminate amidino hydrolase activity","type":"related"},{"name":"proclavaminic acid amidino hydrolase activity","type":"related"}],"termid":"GO:0033972"}


id: PBO:0082157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Adaptor protein that links actin to clathrin and endocytosis; involved in membrane cytoskeleton assembly and cell polarization; present in the actin cortical patch of the emerging bud tip; dimer in vivo","termid":"PBO:0082157"}


id: PR:O94536
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ucp12 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase ucp12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC895.09c","synonyms":[{"name":"Spom972h-ucp12","type":"exact"}],"termid":"PR:O94536"}


id: PATO:0001587
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A variability of rate which is relatively high.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"variability of rate","termid":"PATO:0001586"},{"relation_name":"is_a","term_name":"increased process quality","termid":"PATO:0002304"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased variability of rate","synonyms":[{"name":"high variability of rate","type":"exact"}],"termid":"PATO:0001587"}


id: PBO:0072718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoid X receptor alpha","termid":"PBO:0072718"}


id: MONDO:0044261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete menoq1 (obsolete MONDO:0044261)","secondary_identifiers":["OMIM:300488"],"synonyms":[{"name":"MENOQ1","type":"related"},{"name":"menopause, natural, AGE AT, quantitative trait locus 1","type":"related"},{"name":"menopause, natural, age at, QTL1, X-linked dominant","type":"exact"}],"termid":"MONDO:0044261","xrefs":{"Monarch":{"xref_id":"0044261"}}}


id: PBO:0056055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lung cancer associated transcript 1","termid":"PBO:0056055"}


id: PBO:0077449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 182","termid":"PBO:0077449"}


id: PBO:0026872
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_phosphorylation_of_RNA_polymerase_II_C-terminal_domain_serine_5_residues_during_vegetative_growth","termid":"PBO:0026872"}


id: MONDO:0003566
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete choroid plexus carcinoma (obsolete MONDO:0003566)","termid":"MONDO:0003566","xrefs":{"Monarch":{"xref_id":"0003566"}}}


id: GO:0120137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency or rate of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity.","definition_xrefs":["PMID:23407971"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity (obsolete GO:0120137)","termid":"GO:0120137"}


id: PBO:0039621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annexin A4","termid":"PBO:0039621"}


id: GO:0055065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of metal ions within an organism or cell.","definition_xrefs":["GOC:jid","GOC:ai","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete metal ion homeostasis (obsolete GO:0055065)","termid":"GO:0055065"}


id: PBO:0085462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Predicted protein kinase; negatively regulates the hexosamine biosynthetic pathway (HBP), which converts fructose-6-phosphate into UDP-N-acetylglucosamine, a precursor of chitin biosynthesis, GPI-anchor formation and glycosylation; interacts genetically with GFA1, encoding the first enzyme in the HBP; involved in Gfa1p phosphorylation (S332, T334); contains a Pho85p-regulated SCF-CDC4 phosphodegron; unstable, cell cycle regulated protein, peaking at G1/S","termid":"PBO:0085462"}


id: PBO:0053173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA enhancing IL-6/STAT3 signaling activation 1","termid":"PBO:0053173"}


id: FYPO:0005250
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to caesium ions. Cells stop growing (and may die) at a concentration of caesium ions that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0000003","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to caesium","synonyms":[{"name":"hypersensitive to caesium","type":"exact"},{"name":"sensitive to caesium during mitotic cell cycle","type":"related"},{"name":"sensitive to caesium during vegetative growth","type":"exact"},{"name":"sensitive to caesium ions","type":"exact"},{"name":"sensitive to cesium","type":"exact"}],"termid":"FYPO:0005250"}


id: PBO:0039767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aquaporin 2","termid":"PBO:0039767"}


id: MONDO:0007998
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microspherophakia - metaphyseal dysplasia is a very rare syndrome associating bone dysplasia with micromelic dwarfism and eye defects.","definition_xrefs":["Orphanet:2551"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete lens size anomaly (obsolete MONDO:0020235)","termid":"MONDO:0020235"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microspherophakia-metaphyseal dysplasia syndrome","secondary_identifiers":["OMIM:157151","UMLS:C1834880","MESH:C536540","GARD:5481","MEDGEN:322520"],"synonyms":[{"name":"Verloes Van Maldergem Marneffe syndrome","type":"related"},{"name":"Verloes-Van Maldergem-de Marneffe syndrome","type":"exact"},{"name":"dominantly inherited bone dysplasia with severe eye involvement","type":"related"},{"name":"microspherophakia-metaphyseal dysplasia","type":"related"}],"termid":"MONDO:0007998","xrefs":{"Monarch":{"xref_id":"0007998"}}}


id: PBO:0053029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal protein transmembrane 4 beta","termid":"PBO:0053029"}


id: FYPO:0005900
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which actin filament-based movement is abnormal. Actin filament-based movement is the movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.","definition_xrefs":["GO:0030048","PMID:19570908","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin filament-based process","termid":"FYPO:0006306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal actin filament-based movement","synonyms":[{"name":"abnormal actin filament-based movement during mitotic cell cycle","type":"related"},{"name":"abnormal actin filament-based movement during vegetative growth","type":"exact"}],"termid":"FYPO:0005900"}


id: PR:O14443
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GPN-loop GTPase 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02232","PANTHER:PTHR21231:SF4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPN-loop GTPase 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4D7.12c","secondary_identifiers":["UniProtKB:O14443"],"synonyms":[{"name":"Spom972h-GPN3","type":"exact"},{"name":"factor of eukaryotic transcription 5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14443"}


id: PBO:0030794
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nucleus_localization_in_prospore","termid":"PBO:0030794"}


id: MOD:00995
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to (81)Br-L-2'-bromophenylalanine.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-2'-bromophenylalanine","termid":"MOD:00183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(81)Br labeled 2'-bromophenylalanine","termid":"MOD:00995"}


id: FYPO:0009009
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing arginine as the nitrogen source.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0000003","FYPO:0002057","FYPO:0005447","FYPO:0002060","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"decreased cell population growth on arginine nitrogen source","synonyms":[{"name":"decreased growth on arginine nitrogen source","type":"broad"},{"name":"decreased vegetative cell growth on arginine nitrogen source","type":"exact"},{"name":"reduced cell growth on arginine nitrogen source","type":"related"},{"name":"slow cell growth on arginine nitrogen source","type":"narrow"}],"termid":"FYPO:0009009"}


id: PBO:0005790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NuA4 histone acetyltransferase complex Epl1","termid":"PBO:0005790"}


id: PR:Q09724
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrp11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L11, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.03","synonyms":[{"name":"Spom972h-mrp11","type":"exact"}],"termid":"PR:Q09724"}


id: MONDO:0006064
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete lactose intolerance (obsolete MONDO:0006064)","termid":"MONDO:0006064","xrefs":{"Monarch":{"xref_id":"0006064"}}}


id: MONDO:0100512
data:
  {"annotated_genes":["SJAG_01649","SJAG_02658"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86578],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008758"},{"annotations":[85168],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009747"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome","termid":"MONDO:0018158"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01649":null,"SJAG_02658":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial DNA depletion syndrome, hepatocerebral form","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:777993","MESH:C580039","Orphanet:254871","UMLS:C3711385","GARD:20769","icd11.foundation:1285620325"],"synonyms":[{"name":"deoxyguanosine kinase deficiency","type":"exact"},{"name":"mtDNA depletion syndrome, hepatocerebral form","type":"exact"}],"termid":"MONDO:0100512","terms_by_termid":{"MONDO:0008758":null,"MONDO:0009747":null},"xrefs":{"Monarch":{"xref_id":"0100512"}}}


id: FYPO:0004360
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the duration of mitotic cell cycle arrest or delay due to regulation by the DNA replication checkpoint is shorter than normal. The DNA replication checkpoint normally prevents the initiation of mitosis until DNA replication is complete.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle DNA replication checkpoint","termid":"FYPO:0000173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0000298","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased duration of mitotic cell cycle DNA replication checkpoint","synonyms":[{"name":"decreased duration of DNA replication checkpoint","type":"broad"},{"name":"decreased duration of mitotic cell cycle DNA replication checkpoint activation","type":"exact"},{"name":"reduced duration of mitotic cell cycle DNA replication checkpoint","type":"exact"}],"termid":"FYPO:0004360"}


id: GO:0050603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AH(2) + O2 + thiophene-2-carbonyl-CoA = 5-hydroxythiophene-2-carbonyl-CoA + A + H2O + H+.","definition_xrefs":["RHEA:18929","EC:1.14.99.35"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"thiophene-2-carbonyl-CoA monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R05742","UM-BBD_reactionID:r1235","MetaCyc:1.14.99.35-RXN"],"synonyms":[{"name":"thiophene-2-carbonyl-CoA, hydrogen-donor:oxygen oxidoreductase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA dehydrogenase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA hydroxylase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA monooxygenase activity","type":"related"}],"termid":"GO:0050603"}


id: GO:0007315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Establishment of the specialized cytoplasm found at the poles of the egg. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasm organization","termid":"GO:0007028"},{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"part_of","term_name":"oocyte anterior/posterior axis specification","termid":"GO:0007314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"pole plasm assembly","secondary_identifiers":["GO:0048113"],"termid":"GO:0007315"}


id: MONDO:0014567
data:
  {"annotated_genes":["SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84966],"is_not":false,"summary":null,"term":"MONDO:0014567"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"complex hereditary spastic paraplegia","termid":"MONDO:0015150"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"glutamate pyruvate transaminase 2 deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070542","NORD:91168","GARD:17853","Orphanet:477673","UMLS:C4225388","MEDGEN:906606","OMIM:616281"],"synonyms":[{"name":"GPT2 Deficiency","type":"exact"},{"name":"GPT2 deficiency","type":"exact"},{"name":"MRT49","type":"exact"},{"name":"glutamate pyruvate transaminase 2 deficiency","type":"exact"},{"name":"mental retardation, autosomal recessive 49","type":"exact"},{"name":"mental retardation, autosomal recessive type 49","type":"exact"},{"name":"neurodevelopmental disorder with microcephaly and spastic paraplegia","type":"exact"},{"name":"postnatal microcephaly-infantile hypotonia-spastic diplegia-dysarthria-intellectual disability syndrome","type":"exact"}],"termid":"MONDO:0014567","terms_by_termid":{"MONDO:0014567":null},"xrefs":{"Monarch":{"xref_id":"0014567"}}}


id: PATO:0002306
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length.","definition_xrefs":["PATOC:JB"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triangular","termid":"PATO:0001875"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"equilateral triangular","termid":"PATO:0002306"}


id: MONDO:0004028
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually aggressive malignant neoplasm arising from the small intestine. It is characterized by the presence of spindle-shaped fibroblasts and collagenous stroma formation in a herringbone growth pattern.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small intestinal sarcoma","termid":"MONDO:0003361"},{"relation_name":"is_a","term_name":"fibrosarcoma","termid":"MONDO:0005164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"small intestinal fibrosarcoma","secondary_identifiers":["NCIT:C5336","MEDGEN:234788","UMLS:C1335994","DOID:6880"],"synonyms":[{"name":"fibrosarcoma of small bowel","type":"exact"},{"name":"fibrosarcoma of small intestine","type":"exact"},{"name":"fibrosarcoma of the small bowel","type":"exact"},{"name":"fibrosarcoma of the small intestine","type":"exact"},{"name":"fibrosarcoma, small intestine","type":"exact"},{"name":"small bowel fibrosarcoma","type":"exact"},{"name":"small intestinal fibrosarcoma","type":"exact"},{"name":"small intestine fibrosarcoma","type":"exact"},{"name":"small intestine fibrosarcoma (disease)","type":"exact"}],"termid":"MONDO:0004028","xrefs":{"Monarch":{"xref_id":"0004028"}}}


