# terms

id: GO:0034478
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of phosphatidylglycerols, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylglycerol metabolic process","termid":"GO:0046471"},{"relation_name":"is_a","term_name":"glycerophospholipid catabolic process","termid":"GO:0046475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"phosphatidylglycerol catabolic process","synonyms":[{"name":"phosphatidylglycerol breakdown","type":"exact"},{"name":"phosphatidylglycerol catabolism","type":"exact"},{"name":"phosphatidylglycerol degradation","type":"exact"}],"termid":"GO:0034478"}


id: PBO:0049276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gelsolin","termid":"PBO:0049276"}


id: PBO:0084091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors; involved in proliferation of the Golgi, intra-Golgi transport and ER-to-Golgi transport; found in the cytoplasm and on Golgi-associated coated vesicles","termid":"PBO:0084091"}


id: PBO:0071292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 15","termid":"PBO:0071292"}


id: PBO:0046322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enolase 1 pseudogene 3","termid":"PBO:0046322"}


id: MONDO:0009467
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"natal teeth-intestinal pseudoobstruction-patent ductus syndrome","secondary_identifiers":["MESH:C538341","Orphanet:1654","UMLS:C1855732","OMIM:243185","MEDGEN:340945"],"synonyms":[{"name":"Natal teeth, intestinal pseudoobstruction and patent ductus","type":"related"},{"name":"intestinal pseudoobstruction with patent ductus arteriosus and NATAL teeth","type":"related"}],"termid":"MONDO:0009467","xrefs":{"Monarch":{"xref_id":"0009467"}}}


id: PBO:0075296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterol O-acyltransferase 1","termid":"PBO:0075296"}


id: FYPO:0007936
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the number of sites of  DNA breakpoint junctions is greater than normal.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased DNA damage","termid":"FYPO:0003546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"increased number of DNA breakpoint junctions","termid":"FYPO:0007936"}


id: GO:0010384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cell wall peptidoglycan, a group of glycoproteins that consist of a core-protein backbone O-glycosylated by one or more complex carbohydrates.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteoglycan metabolic process","termid":"GO:0006029"},{"relation_name":"is_a","term_name":"cell wall macromolecule metabolic process","termid":"GO:0044036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0008150","GO:0071554"],"is_obsolete":false,"name":"cell wall proteoglycan metabolic process","synonyms":[{"name":"cell wall proteoglycan metabolism","type":"exact"}],"termid":"GO:0010384"}


id: GO:0010746
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of plasma membrane long-chain fatty acid transport. Plasma membrane long-chain fatty acid transport is the directed movement of long-chain fatty acids across the plasma membrane. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transmembrane transport","termid":"GO:0034762"},{"relation_name":"is_a","term_name":"regulation of long-chain fatty acid import into cell","termid":"GO:0140212"},{"relation_name":"regulates","term_name":"long-chain fatty acid import across plasma membrane","termid":"GO:0015911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"regulation of long-chain fatty acid import across plasma membrane","synonyms":[{"name":"regulation of plasma membrane long-chain fatty acid transport","type":"exact"}],"termid":"GO:0010746"}


id: GO:0034373
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acquisition, loss or modification of a protein or lipid within an intermediate-density lipoprotein particle.","definition_xrefs":["GOC:rl","GOC:expert_pt","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triglyceride-rich lipoprotein particle remodeling","termid":"GO:0034370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intermediate-density lipoprotein particle remodeling","synonyms":[{"name":"IDL remodeling","type":"exact"},{"name":"IDL remodelling","type":"exact"},{"name":"intermediate-density lipoprotein particle formation","type":"related"},{"name":"intermediate-density lipoprotein particle remodelling","type":"exact"}],"termid":"GO:0034373"}


id: GO:0000112
data:
  {"annotated_genes":["SJAG_00901","SJAG_00512","SJAG_03618","SJAG_00995","SJAG_03206"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89397,89766,91678,102633,111529],"is_not":false,"summary":null,"term":"GO:0000112"}]},"cv_name":"cellular_component","definition":"One of several protein complexes involved in nucleotide-excision repair; possesses endodeoxynuclease and DNA helicase activities. In S. cerevisiae, it is composed of Rad2p and the core TFIIH-Ssl2p complex (core TFIIH is composed of Rad3p, Tfb1p, Tfb2p, Ssl1p, Tfb4p and Tfb5p. Note that Ssl2p is also called Rad25p).","definition_xrefs":["PMID:7813015","PMID:14500720","PMID:10915862","GOC:ew"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair complex","termid":"GO:0000109"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00512":null,"SJAG_00901":null,"SJAG_00995":null,"SJAG_03206":null,"SJAG_03618":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"nucleotide-excision repair factor 3 complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NEF3 complex","type":"exact"}],"termid":"GO:0000112","terms_by_termid":{"GO:0000112":null}}


id: PBO:0058066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4285","termid":"PBO:0058066"}


id: MONDO:0957460
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal perforation","termid":"MONDO:0006807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"spontaneous intestinal perforation","secondary_identifiers":["UMLS:C3897004","icd11.foundation:1355081169","Orphanet:645793","MEDGEN:856598"],"termid":"MONDO:0957460","xrefs":{"Monarch":{"xref_id":"0957460"}}}


id: GO:0032081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops or reduces the rate of type II restriction endodeoxyribonuclease activity.","definition_xrefs":["GOC:tb","GOC:dph","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of type II site-specific deoxyribonuclease activity (obsolete GO:0032081)","synonyms":[{"name":"down regulation of type II restriction endodeoxyribonuclease activity","type":"exact"},{"name":"down-regulation of type II restriction endodeoxyribonuclease activity","type":"exact"},{"name":"downregulation of type II restriction endodeoxyribonuclease activity","type":"exact"},{"name":"inhibition of type II restriction endodeoxyribonuclease activity","type":"narrow"},{"name":"negative regulation of type II restriction endodeoxyribonuclease activity","type":"exact"},{"name":"type II restriction endodeoxyribonuclease inhibitor","type":"related"},{"name":"type II restriction enzyme inhibitor","type":"related"}],"termid":"GO:0032081"}


id: MONDO:0012625
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the NR2E3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066","MONDO:0005328"],"is_obsolete":false,"name":"retinitis pigmentosa 37","secondary_identifiers":["UMLS:C1970163","ICD10CM:H35.5","DOID:0110399","MEDGEN:410004","GARD:15508","MESH:C567005","OMIM:611131"],"synonyms":[{"name":"NR2E3 retinitis pigmentosa","type":"exact"},{"name":"RP37","type":"exact"},{"name":"retinitis pigmentosa 37","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in NR2E3","type":"exact"},{"name":"retinitis pigmentosa type 37","type":"exact"}],"termid":"MONDO:0012625","xrefs":{"Monarch":{"xref_id":"0012625"}}}


id: MONDO:0016734
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A WHO grade III neuroepithelial neoplasm composed of neoplastic, mature ganglion cells and anaplastic glial cells. The anaplastic changes in the glial component and high MIB-1 and TP53 labeling indices may indicate aggressive behavior. However, the correlation of histological anaplasia with clinical outcome is inconsistent. (Adapted from WHO)","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ganglioglioma","termid":"MONDO:0016733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaplastic ganglioglioma","secondary_identifiers":["NCIT:C4717","UMLS:C0431112","ONCOTREE:AGNG","Orphanet:251957","ICDO:9505/3","GARD:10639","MEDGEN:140906"],"synonyms":[{"name":"AGNG","type":"related"}],"termid":"MONDO:0016734","xrefs":{"Monarch":{"xref_id":"0016734"}}}


id: GO:0018330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transient guanylylation of lysine to form N6-(phospho-5'-guanosine)-L-lysine, found in the guanylyltransferase active site of mRNA capping enzyme.","definition_xrefs":["RESID:AA0228"],"gene_count":0,"genotype_count":0,"name":"obsolete enzyme active site formation via N6-(phospho-5'-guanosine)-L-lysine (obsolete GO:0018330)","termid":"GO:0018330"}


id: PBO:0051305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR-3 (pseudogene)","termid":"PBO:0051305"}


id: MONDO:0100244
data:
  {"annotated_genes":["SJAG_00846","SJAG_04881"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86437],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010438"},{"annotations":[85491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014166"}]},"cv_name":"mondo","definition":"Paroxysmal nocturnal hemoglobinuria (PNH) is an acquired clonal hematopoietic stem cell disorder characterized by corpuscular hemolytic anemia, bone marrow failure and frequent thrombotic events.","definition_xrefs":["Orphanet:447"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"inborn disorder of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation","termid":"MONDO:0017748"},{"relation_name":"is_a","term_name":"hemoglobinuria","termid":"MONDO:0003656"},{"relation_name":"is_a","term_name":"hemolytic anemia","termid":"MONDO:0003664"},{"relation_name":"is_a","term_name":"acquired metabolic disease","termid":"MONDO:0006504"},{"relation_name":"is_a","term_name":"acquired aplastic anemia","termid":"MONDO:0015610"},{"relation_name":"is_a","term_name":"disorder of GPI anchor biosynthesis","termid":"MONDO:0024321"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00846":null,"SJAG_04881":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005240","MONDO:0005570","MONDO:0005066","MONDO:0024322"],"is_obsolete":false,"name":"paroxysmal nocturnal hemoglobinuria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:859588467","MEDGEN:7471","GARD:7337","OMIMPS:300818","DOID:0060284","HP:0004818","NORD:1557","NCIT:C61233","SCTID:127057004","HGNC:8957","MedDRA:10034042","SCTID:1963002","UMLS:C0024790"],"synonyms":[{"name":"Marchiafava-Micheli disease","type":"exact"},{"name":"PNH","type":"exact"},{"name":"acquired paroxysmal nocturnal hemoglobinuria","type":"exact"},{"name":"hereditary paroxysmal nocturnal hemoglobinuria","type":"exact"},{"name":"inherited paroxysmal nocturnal hemoglobinuria","type":"exact"},{"name":"paroxysmal hemoglobinuria","type":"exact"}],"termid":"MONDO:0100244","terms_by_termid":{"MONDO:0010438":null,"MONDO:0014166":null},"xrefs":{"Monarch":{"xref_id":"0100244"}}}


id: PR:P78958
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glyceraldehyde-3-phosphate dehydrogenase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03431"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32F12.11","secondary_identifiers":["UniProtKB:P78958"],"synonyms":[{"name":"GAPDH 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GAPDH","type":"exact"}],"termid":"PR:P78958"}


id: PBO:0075899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppression of tumorigenicity 7 like","termid":"PBO:0075899"}


id: PBO:0030131
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_iron_level","termid":"PBO:0030131"}


id: PBO:0001207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uracil phosphoribosyltransferase (predicted)","termid":"PBO:0001207"}


id: PATO:0002134
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers.","definition_xrefs":["wikipedia:wikipedia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrillary","synonyms":[{"name":"fibrillate","type":"exact"}],"termid":"PATO:0002134"}


id: PBO:0067986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 288","termid":"PBO:0067986"}


id: GO:0034994
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microtubule organizing center attachment site. A microtubule organizing center attachment site is a region of the nuclear envelope to which a microtubule organizing center (MTOC) attaches.","definition_xrefs":["GOC:mah","PMID:18692466"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"},{"relation_name":"part_of","term_name":"nuclear envelope organization","termid":"GO:0006998"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"microtubule organizing center attachment site organization","synonyms":[{"name":"MAS organization","type":"exact"},{"name":"MTOC attachment site organization","type":"exact"},{"name":"microtubule organising centre attachment site organisation","type":"related"}],"termid":"GO:0034994"}


id: GO:0061447
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process involved in the specification of endocardial cushion cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.","definition_xrefs":["GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac cell fate specification","termid":"GO:0060912"},{"relation_name":"part_of","term_name":"endocardial cushion cell fate commitment","termid":"GO:0061445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endocardial cushion cell fate specification","termid":"GO:0061447"}


id: PBO:0085898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; localizes to the nucleus; required for asymmetric localization of Kar9p during mitosis","termid":"PBO:0085898"}


id: PBO:0028150
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_level_of_macromolecular_complex","termid":"PBO:0028150"}


id: FYPO:0001364
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actomyosin contractile ring contraction is abnormal. Contractile ring contraction is the part of cytokinesis in which the actomyosin contractile ring constricts.","definition_xrefs":["PomBase:mah","GO:1902404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring organization","termid":"FYPO:0004738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0005447","FYPO:0004803","FYPO:0001320","FYPO:0000032","FYPO:0000002"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring contraction","synonyms":[{"name":"abnormal actomyosin contractile ring constriction","type":"exact"},{"name":"abnormal actomyosin contractile ring contraction during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring contraction during vegetative growth","type":"exact"},{"name":"abnormal contractile ring contraction","type":"exact"},{"name":"abnormal cytokinetic contractile ring contraction","type":"exact"},{"name":"abnormal mitotic actomyosin contractile ring contraction","type":"exact"},{"name":"abnormal mitotic contractile ring contraction","type":"exact"}],"termid":"FYPO:0001364"}


id: PBO:0073854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC9A3R1 antisense RNA 1","termid":"PBO:0073854"}


id: MONDO:0014456
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive severe congenital neutropenia","termid":"MONDO:0028226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0006025","MONDO:0005046"],"is_obsolete":false,"name":"autosomal recessive severe congenital neutropenia due to JAGN1 deficiency","secondary_identifiers":["MEDGEN:863391","Orphanet:423384","DOID:0112134","UMLS:C4014954","GARD:17702","OMIM:616022"],"synonyms":[{"name":"SCN6","type":"related"},{"name":"neutropenia, severe congenital, 6, autosomal recessive","type":"related"}],"termid":"MONDO:0014456","xrefs":{"Monarch":{"xref_id":"0014456"}}}


id: MONDO:0015001
data:
  {"annotated_genes":["SJAG_00228"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86542],"is_not":false,"summary":null,"term":"MONDO:0015001"}]},"cv_name":"mondo","definition":"Any familial atrial fibrillation in which the cause of the disease is a mutation in the MYL4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial atrial fibrillation","termid":"MONDO:0018054"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00228":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"atrial fibrillation, familial, 18","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:617280","GARD:16219","UMLS:C4310636","MEDGEN:934603"],"synonyms":[{"name":"ATFB18","type":"exact"},{"name":"MYL4 familial atrial fibrillation","type":"exact"},{"name":"atrial fibrillation, familial, 18","type":"exact"},{"name":"atrial fibrillation, familial, 18; ATFB18","type":"exact"},{"name":"atrial fibrillation, familial, type 18","type":"exact"},{"name":"familial atrial fibrillation caused by mutation in MYL4","type":"exact"}],"termid":"MONDO:0015001","terms_by_termid":{"MONDO:0015001":null},"xrefs":{"Monarch":{"xref_id":"0015001"}}}


id: GO:1901077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of relaxation of muscle.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle system process","termid":"GO:0090257"},{"relation_name":"regulates","term_name":"relaxation of muscle","termid":"GO:0090075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of relaxation of muscle","termid":"GO:1901077"}


id: MONDO:0005445
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A severe form of leishmaniasis characterized by irregular bouts of fever, substantial weight loss, swelling of the spleen and liver, and anemia (which may be serious). If left untreated it may lead to death. Two species of Leishmania are known to give rise to the visceral form of the disease. The species commonly found in East Africa and the Indian subcontinent is L. donovani and the species found in Europe, North Africa, and Latin America is L. infantum, also known as L. chagasi.","definition_xrefs":["Wikipedia:Visceral_leishmaniasis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"leishmaniasis","termid":"MONDO:0011989"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"visceral leishmaniasis","secondary_identifiers":["ICD9:085.0","icd11.foundation:1646564717","EFO:0005045","MEDGEN:44098","NCIT:C34771","OMIMPS:608207","ICD10CM:B55.0","SCTID:186803007","DOID:9146","MESH:D007898","UMLS:C0023290"],"synonyms":[{"name":"infection by visceral leishmaniasis","type":"exact"},{"name":"kala-azar","type":"exact"},{"name":"kala-azar susceptibility","type":"related"},{"name":"kala-azar, susceptibility to","type":"related"},{"name":"viscus leishmaniasis","type":"exact"}],"termid":"MONDO:0005445","xrefs":{"Monarch":{"xref_id":"0005445"}}}


id: MONDO:0016441
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A nonheritable form of pseudoxanthoma elasticum (PXE), lacking the retinal and vascular stigmata associated with the inherited form of the disorder, but having skin lesions that are clinically, histologically, and ultrastructurally similar to those seen in the inherited type.","definition_xrefs":["PMID:528701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudoxanthoma elasticum (inherited or acquired)","termid":"MONDO:0024308"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acquired pseudoxanthoma elasticum","secondary_identifiers":["SCTID:403401007","GARD:20581","ICD9:757.39","MEDGEN:698082","UMLS:C1274759","Orphanet:228247","icd11.foundation:2017339816"],"synonyms":[{"name":"acquired Gronblad-Strandberg-Touraine syndrome","type":"exact"},{"name":"acquired PXE","type":"exact"},{"name":"acquired pseudoxanthoma elasticum","type":"exact"},{"name":"acquired pseudoxanthoma elasticum (inherited or acquired)","type":"exact"},{"name":"localised acquired cutaneous pseudoxanthoma elasticum","type":"exact"},{"name":"localized acquired cutaneous pseudoxanthoma elasticum","type":"exact"}],"termid":"MONDO:0016441","xrefs":{"Monarch":{"xref_id":"0016441"}}}


id: PBO:0025537
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by N. crassa TNC","termid":"PBO:0025537"}


id: PBO:0034165
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-results_in_disappearance_of","termid":"PBO:0034165"}


id: FYPO:0003411
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at centromere inner repeat regions is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased chromatin silencing at centromere","termid":"FYPO:0002834"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased chromatin silencing at centromere inner repeat","synonyms":[{"name":"decreased chromatin silencing at centromere imr","type":"exact"},{"name":"decreased chromatin silencing at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"decreased chromatin silencing at centromere inner repeat during vegetative growth","type":"exact"},{"name":"decreased chromatin silencing at centromeric inner repeat region","type":"exact"},{"name":"decreased heterochromatin silencing at centromere inner repeat","type":"exact"},{"name":"reduced chromatin silencing at centromere inner repeat","type":"exact"}],"termid":"FYPO:0003411"}


id: SO:0001197
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An oligo composed of (S)-GNA residues.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"S_GNA","termid":"SO:0001196"},{"relation_name":"is_a","term_name":"GNA_oligo","termid":"SO:0001193"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S_GNA_oligo","synonyms":[{"name":"(S)-glycerol nucleic acid","type":"exact"},{"name":"(S)-glycol nucleic acid","type":"exact"},{"name":"S GNA oligo","type":"exact"}],"termid":"SO:0001197"}


id: MONDO:0003969
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Disorders related or resulting from use of amphetamines.","definition_xrefs":["MESH:D019969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance abuse","termid":"MONDO:0002491"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amphetamine abuse","secondary_identifiers":["ICD9:305.70","icd11.foundation:879494155","ICD9:305.7","DOID:670","MEDGEN:66744","SCTID:84758004","UMLS:C0236807"],"termid":"MONDO:0003969","xrefs":{"Monarch":{"xref_id":"0003969"}}}


id: GO:0070086
data:
  {"annotated_genes":["SJAG_01686","SJAG_04466","SJAG_00803","SJAG_03404","SJAG_04051","SJAG_03643","SJAG_02789","SJAG_00032"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91717,95794,105186,107524,110477,111757,116966,118301],"is_not":false,"summary":null,"term":"GO:0070086"}]},"cv_name":"biological_process","definition":"Endocytosis of a protein that requires the substrate to be modified by ubiquitination. Several plasma membrane proteins, including cell surface permeases and some receptors, are targeted for internalization by endocytosis, and are thereafter delivered to the vacuole or lysosome, where they are degraded.","definition_xrefs":["GOC:mah","PMID:9409540","GOC:jp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocytosis","termid":"GO:0006897"},{"relation_name":"is_a","term_name":"protein transport","termid":"GO:0015031"},{"relation_name":"is_a","term_name":"establishment of protein localization to organelle","termid":"GO:0072594"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00032":null,"SJAG_00803":null,"SJAG_01686":null,"SJAG_02789":null,"SJAG_03404":null,"SJAG_03643":null,"SJAG_04051":null,"SJAG_04466":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"ubiquitin-dependent endocytosis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ubiquitin-mediated endocytosis","type":"exact"}],"termid":"GO:0070086","terms_by_termid":{"GO:0070086":null}}


id: PBO:0091183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orf307","termid":"PBO:0091183"}


id: GO:0046543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the secondary female sexual characteristics over time, from their formation to the mature structures. In female humans, these include growth of axillary and pubic hair, breast development and menstrual periods. Their development occurs in response to sex hormone secretion.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"development of secondary sexual characteristics","termid":"GO:0045136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"development of secondary female sexual characteristics","termid":"GO:0046543"}


id: PR:O60067
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC13G1.05 gene.","definition_xrefs":["UniProtKB:O60067","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum membrane protein 65 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13G1.05","synonyms":[{"name":"Spom972h-SPBC13G1.05","type":"exact"}],"termid":"PR:O60067"}


id: FYPO:0001367
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cytokinesis is normal (i.e. indistinguishable from wild type). Cytokinesis is part of the cell cycle and results in the division of the cytoplasm of a cell and its separation into two daughter cells.","definition_xrefs":["GO:0000281","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle process","termid":"FYPO:0002741"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal cytokinesis","synonyms":[{"name":"normal cell cycle cytokinesis","type":"exact"},{"name":"normal cytokinesis during mitotic cell cycle","type":"related"},{"name":"normal cytokinesis during vegetative growth","type":"exact"},{"name":"normal mitotic cytokinesis","type":"exact"}],"termid":"FYPO:0001367"}


id: MONDO:0004592
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A contagious bacterial cutaneous infection that affects children and is usually caused by Staphylococcus aureus. It usually presents in the face with honey colored scabs.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyoderma","termid":"MONDO:0002922"},{"relation_name":"is_a","term_name":"staphylococcus aureus infection","termid":"MONDO:0005545"},{"relation_name":"is_a","term_name":"skin infection","termid":"MONDO:0021201"},{"relation_name":"is_a","term_name":"streptococcal infection","termid":"MONDO:0021680"},{"relation_name":"is_a","term_name":"skin disease caused by bacterial infection","termid":"MONDO:0024295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"impetigo","secondary_identifiers":["DOID:8504","UMLS:C0021099","MESH:D007169","NCIT:C99088","icd11.foundation:971176543","ICD9:684","SCTID:48277006","ICD10CM:L01","MEDGEN:9440"],"termid":"MONDO:0004592","xrefs":{"Monarch":{"xref_id":"0004592"}}}


id: PBO:0047213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM222A antisense RNA 1","termid":"PBO:0047213"}


id: MOD:01616
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-cysteine residues and adds three sulfur atoms to form trithiocystine.","definition_xrefs":["RESID:AA0513","PubMed:19438211"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysulfide crosslinked residues","termid":"MOD:01620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"trithiocystine","synonyms":[{"name":"(2R,2'R)-3,3'-pentasulfane-1,5-diylbis(2-aminopropanoic acid)","type":"exact"},{"name":"3,3'-pentathiobisalanine","type":"exact"},{"name":"bis(2-amino-2-carboxyethyl)pentasulfide","type":"exact"},{"name":"trithiocystine","type":"exact"}],"termid":"MOD:01616"}


id: GO:0015869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of protein-DNA complexes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"},{"relation_name":"is_a","term_name":"nucleobase-containing compound transport","termid":"GO:0015931"},{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"protein-DNA complex transport","synonyms":[{"name":"DNA-protein complex transport","type":"exact"}],"termid":"GO:0015869"}


id: MONDO:0009956
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"red skin pigment anomaly of new guinea","secondary_identifiers":["MEDGEN:341457","OMIM:266350","MESH:C535515","UMLS:C1849451"],"synonyms":[{"name":"Red skin pigment, New Guinea type","type":"related"},{"name":"red skin pigment anomaly of new guinea","type":"exact"}],"termid":"MONDO:0009956","xrefs":{"Monarch":{"xref_id":"0009956"}}}


id: GO:0043874
data:
  {"annotated_genes":["SJAG_01404"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98520],"is_not":false,"summary":null,"term":"GO:0043874"}]},"cv_name":"molecular_function","definition":"Catalysis of the reactions:5-methylsulfanyl-2,3-dioxopentyl phosphate + H2O = 1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one + phosphate.","definition_xrefs":["RHEA:21700"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01404":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"acireductone synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:3.1.3.77","MetaCyc:3.1.3.77-RXN","Reactome:R-HSA-1237129"],"synonyms":[{"name":"5-(methylthio)-2,3-dioxopentyl-phosphate phosphohydrolase (isomerizing)","type":"related"},{"name":"E-1","type":"related"},{"name":"E-1 enolase-phosphatase","type":"broad"}],"termid":"GO:0043874","terms_by_termid":{"GO:0043874":null}}


id: GO:2001209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of transcription elongation from RNA polymerase I promoter.","definition_xrefs":["PMID:20299458"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA-templated transcription, elongation","termid":"GO:0032786"},{"relation_name":"is_a","term_name":"positive regulation of transcription by RNA polymerase I","termid":"GO:0045943"},{"relation_name":"is_a","term_name":"regulation of transcription elongation by RNA polymerase I","termid":"GO:2001207"},{"relation_name":"positively_regulates","term_name":"transcription elongation by RNA polymerase I","termid":"GO:0006362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0006355","GO:0006351","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of transcription elongation by RNA polymerase I","synonyms":[{"name":"positive regulation of RNA elongation from Pol I promoter","type":"exact"},{"name":"positive regulation of transcription elongation from RNA polymerase I promoter","type":"exact"}],"termid":"GO:2001209"}


id: PBO:0041316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 2 open reading frame 69 pseudogene 2","termid":"PBO:0041316"}


id: MONDO:0003345
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cholangiocarcinoma that arises from the junction, or adjacent to the junction, of the right and left hepatic ducts.","definition_xrefs":["NCIT:C36077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intrahepatic cholangiocarcinoma","termid":"MONDO:0003210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992","MONDO:0002515"],"is_obsolete":false,"name":"hilar cholangiocarcinoma","secondary_identifiers":["EFO:1001959","MESH:D018285","DOID:4927","SCTID:253017000","UMLS:C0206702","GARD:10175","DOID:5246","Orphanet:99978","MEDGEN:61664","icd11.foundation:1571104786"],"synonyms":[{"name":"Klatskin tumor","type":"exact"},{"name":"Klatskin tumour","type":"exact"},{"name":"Klatskin's tumor","type":"exact"},{"name":"Klatskin's tumour","type":"exact"},{"name":"cholangiocarcinoma of hilar portion of hepatic duct","type":"exact"},{"name":"hilar CC","type":"exact"},{"name":"hilar CCA","type":"exact"},{"name":"hilar cholangiocarcinoma","type":"exact"},{"name":"hilar cholangiocellular carcinoma","type":"related"},{"name":"hilar portion of hepatic duct cholangiocarcinoma","type":"exact"},{"name":"perihilar cholangiocarcinoma","type":"related"},{"name":"perihilar extrahepatic bile duct carcinoma","type":"exact"}],"termid":"MONDO:0003345","xrefs":{"Monarch":{"xref_id":"0003345"}}}


id: GO:1905874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of postsynaptic density organization.","definition_xrefs":["PMID:21887379","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle organization","termid":"GO:0033043"},{"relation_name":"is_a","term_name":"regulation of postsynapse organization","termid":"GO:0099175"},{"relation_name":"regulates","term_name":"postsynaptic density organization","termid":"GO:0097106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of postsynaptic density organization","synonyms":[{"name":"regulation of PSD organization","type":"exact"},{"name":"regulation of post synaptic density organization","type":"exact"},{"name":"regulation of post-synaptic density organization","type":"exact"},{"name":"regulation of postsynaptic density organisation","type":"exact"}],"termid":"GO:1905874"}


id: PBO:0041206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bystin like","termid":"PBO:0041206"}


id: PBO:0080857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YES1 pseudogene 1","termid":"PBO:0080857"}


id: MONDO:0018459
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Isolated glycerol kinase deficiency (GKD) is a very rare X-linked disorder of glycerol metabolism characterized biochemically by elevated plasma and urine glycerol levels, and clinically by variable neurometabolic manifestations, depending on the age of onset, and varying from a life-threatening childhood metabolic crisis to an asymptomatic adult form (infantile GKD, juvenile GKD, and adult GKD ).","definition_xrefs":["Orphanet:408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn glycerol kinase deficiency","termid":"MONDO:0010613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"isolated glycerol kinase deficiency","secondary_identifiers":["GARD:2807","icd11.foundation:542432712"],"synonyms":[{"name":"hyperglycerolemia","type":"exact"},{"name":"isolated inborn glycerol kinase deficiency","type":"exact"},{"name":"nonsyndromic glycerol kinase deficiency","type":"exact"},{"name":"nonsyndromic inborn glycerol kinase deficiency","type":"exact"}],"termid":"MONDO:0018459","xrefs":{"Monarch":{"xref_id":"0018459"}}}


id: GO:0001720
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification process that results in the conversion of lysine, carried by a specialized lysine-accepting tRNA (possessing a CUA anticodon), to pyrrolysine (a lysine with an amide linkage to a (4R,5R)-4-substituted pyrroline-5-carboxylate).","definition_xrefs":["PMID:12121639","PMID:12029131","PMID:12029132"],"direct_ancestors":[{"relation_name":"is_a","term_name":"charged-tRNA amino acid modification","termid":"GO:0019988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006399","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"conversion of lysyl-tRNA to pyrrolysyl-tRNA","termid":"GO:0001720"}


id: FYPO:0006951
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of N(alpha),N(alpha)-dimethyl-L-histidines measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular amino acid level","termid":"FYPO:0003986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular N(alpha),N(alpha)-dimethyl-L-histidine level","synonyms":[{"name":"increased N(alpha),N(alpha)-dimethyl-L-histidine accumulation","type":"related"},{"name":"increased cellular N(alpha),N(alpha)-dimethyl-L-histidine level during mitotic cell cycle","type":"related"},{"name":"increased cellular N(alpha),N(alpha)-dimethyl-L-histidine level during vegetative growth","type":"exact"},{"name":"increased cellular dimethyl-histidine level","type":"exact"},{"name":"increased cellular dimethylhistidine level","type":"exact"}],"termid":"FYPO:0006951"}


id: MOD:01594
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Applied Biosystems iTRAQ8plex-113 reagent derivatized residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"iTRAQ8plex-113 reporter+balance reagent acylated residue","termid":"MOD:01528"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter fragment","termid":"MOD:01593"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-113 reporter fragment","synonyms":[{"name":"4-methyl-1-methylidenepiperazin-1-ium","type":"exact"}],"termid":"MOD:01594"}


id: PBO:0030271
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_negative_regulation_of_mitotic_DNA_replication_initiation_resulting_in_slow_rereplication","termid":"PBO:0030271"}


id: PBO:0043054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcineurin like EF-hand protein 2","termid":"PBO:0043054"}


id: FYPO:0005708
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the interphase microtubule organizing center (iMTOC) is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cytoskeleton during vegetative growth","termid":"FYPO:0003184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization to iMTOC","synonyms":[{"name":"normal protein localisation to iMTOC","type":"exact"},{"name":"normal protein localization to iMTOC during mitotic cell cycle","type":"related"},{"name":"normal protein localization to iMTOC during vegetative growth","type":"exact"},{"name":"normal protein localization to interphase microtubule organizing center","type":"exact"}],"termid":"FYPO:0005708"}


id: PBO:0050361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 64","termid":"PBO:0050361"}


id: GO:0102682
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(6)-(dimethylallyl)adenosine 5'-phosphate + H2O = N(6)-dimethylallyladenine + D-ribose 5-phosphate.","definition_xrefs":["RHEA:48560","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing N-glycosyl compounds","termid":"GO:0016799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016798","GO:0003824"],"is_obsolete":false,"name":"cytokinin riboside 5'-monophosphate phosphoribohydrolase activity","secondary_identifiers":["EC:3.2.2.n1","MetaCyc:RXN-4313"],"synonyms":[{"name":"N6-(Delta2-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase activity","type":"exact"}],"termid":"GO:0102682"}


id: PBO:0040677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCAR1 pseudogene 2","termid":"PBO:0040677"}


id: PATO:0000759
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting paralytic behaviour when subjected to mechanical shock.","definition_xrefs":["PATOC:flybase"],"direct_ancestors":[{"relation_name":"has_part","term_name":"paralysed","termid":"PATO:0000763"},{"relation_name":"is_a","term_name":"behavioral quality","termid":"PATO:0000186"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bang sensitive","termid":"PATO:0000759"}


id: MONDO:0016412
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Peripheral hypothyroidism is a type of permanent congenital hypothyroidism, a permanent thyroid hormone deficiency that is present from birth, that results from peripheral defects in thyroid hormone metabolism.","definition_xrefs":["Orphanet:226310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"permanent congenital hypothyroidism","termid":"MONDO:0016408"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peripheral hypothyroidism","secondary_identifiers":["UMLS:C5704669","MEDGEN:1843430"],"termid":"MONDO:0016412","xrefs":{"Monarch":{"xref_id":"0016412"}}}


id: MONDO:0001705
data:
  {"annotated_genes":["SJAG_02749","SJAG_01512","SJAG_04168","SJAG_01621","SJAG_04478","SJAG_01568","SJAG_04746","SJAG_03254","SJAG_02280","SJAG_02585","SJAG_04066","SJAG_04204","SJAG_00166","SJAG_02335","SJAG_02894","SJAG_03919","SJAG_01296","SJAG_00465","SJAG_03762","SJAG_04414","SJAG_02046","SJAG_00749","SJAG_02597","SJAG_03335","SJAG_02358","SJAG_01588","SJAG_02340","SJAG_01366","SJAG_00921","SJAG_02802","SJAG_00468","SJAG_04695","SJAG_02904"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85048,85049],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007110"},{"annotations":[85822,85821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013217"},{"annotations":[86711],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013964"},{"annotations":[85345,85346],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014245"},{"annotations":[85921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014394"},{"annotations":[84857],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010493"},{"annotations":[85951,85950],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011639"},{"annotations":[86346,86345],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044309"},{"annotations":[86349],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044310"},{"annotations":[85579,85580],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032668"},{"annotations":[85581],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032669"},{"annotations":[85583,85584],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032670"},{"annotations":[85300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0031071"},{"annotations":[85380,85379],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012529"},{"annotations":[86283,86284],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012924"},{"annotations":[86282,86281],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012925"},{"annotations":[86300,86299],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012937"},{"annotations":[86298,86297],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012938"},{"annotations":[86301],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012939"},{"annotations":[85823,85824],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013216"}]},"cv_name":"mondo","definition":"A disease characterized by normocytic, normochromic anemia, low hematocrit, reticulocytopenia, and selective erythroid hypoplasia.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"idiopathic aplastic anemia","termid":"MONDO:0012197"},{"relation_name":"is_a","term_name":"anemia","termid":"MONDO:0002280"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00166":null,"SJAG_00465":null,"SJAG_00468":null,"SJAG_00749":null,"SJAG_00921":null,"SJAG_01296":null,"SJAG_01366":null,"SJAG_01512":null,"SJAG_01568":null,"SJAG_01588":null,"SJAG_01621":null,"SJAG_02046":null,"SJAG_02280":null,"SJAG_02335":null,"SJAG_02340":null,"SJAG_02358":null,"SJAG_02585":null,"SJAG_02597":null,"SJAG_02749":null,"SJAG_02802":null,"SJAG_02894":null,"SJAG_02904":null,"SJAG_03254":null,"SJAG_03335":null,"SJAG_03762":null,"SJAG_03919":null,"SJAG_04066":null,"SJAG_04168":null,"SJAG_04204":null,"SJAG_04414":null,"SJAG_04478":null,"SJAG_04695":null,"SJAG_04746":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"pure red-cell aplasia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:1340","GARD:7504","UMLS:C0034902","MEDGEN:11154","NANDO:2100177","MESH:D012010","SCTID:50715003","ICD9:284.81","NCIT:C34974","NORD:1636"],"synonyms":[{"name":"PRCA","type":"exact"},{"name":"Pure Red Cell Aplasia, Acquired","type":"exact"},{"name":"primary red cell aplasia","type":"exact"},{"name":"pure red cell aplasia","type":"exact"},{"name":"red cell hypoplasia","type":"exact"}],"termid":"MONDO:0001705","terms_by_termid":{"MONDO:0007110":null,"MONDO:0010493":null,"MONDO:0011639":null,"MONDO:0012529":null,"MONDO:0012924":null,"MONDO:0012925":null,"MONDO:0012937":null,"MONDO:0012938":null,"MONDO:0012939":null,"MONDO:0013216":null,"MONDO:0013217":null,"MONDO:0013964":null,"MONDO:0014245":null,"MONDO:0014394":null,"MONDO:0031071":null,"MONDO:0032668":null,"MONDO:0032669":null,"MONDO:0032670":null,"MONDO:0044309":null,"MONDO:0044310":null},"xrefs":{"Monarch":{"xref_id":"0001705"}}}


id: PBO:0041271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q like 3","termid":"PBO:0041271"}


id: PBO:0070008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1305, pseudogene","termid":"PBO:0070008"}


id: GO:0036412
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + oxalate = acetate + oxalyl-CoA.","definition_xrefs":["GOC:imk","PMID:23935849"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016782","GO:0003674"],"is_obsolete":false,"name":"acetyl-CoA:oxalate CoA-transferase","secondary_identifiers":["RHEA:37883"],"termid":"GO:0036412"}


id: MONDO:0002153
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A scalp hair loss condition characterized by excessive shedding of hair in the resting phase of growth, usually following a fever or major body stress.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia","termid":"MONDO:0004907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telogen effluvium","secondary_identifiers":["UMLS:C0263518","ICD10CM:L65.0","icd11.foundation:1188535025","MEDGEN:537938","DOID:1943","ICD9:704.02","NCIT:C112200","SCTID:39479004"],"termid":"MONDO:0002153","xrefs":{"Monarch":{"xref_id":"0002153"}}}


id: PBO:0029400
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_nucleoplasm","termid":"PBO:0029400"}


id: FYPO:0008066
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is no longer arrested during G1 phase when phosphate is removed. Arrest may either occur under conditions where arrest is not a normal occurrence, or may progress differently from normal under conditions where arrest normally does take place.","definition_xrefs":["PMID:36779416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle arrest in mitotic G1 phase","termid":"FYPO:0005097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"abolished cell cycle arrest in mitotic G1 phase in response to phosphate starvation","termid":"FYPO:0008066"}


id: GO:0034711
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an inhibin monomer, any of the polypeptides that combine to form activin and inhibin dimers.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"inhibin binding","secondary_identifiers":["GO:0048186","GO:0048187","GO:0034712"],"synonyms":[{"name":"inhibin alpha binding","type":"narrow"},{"name":"inhibin beta-A binding","type":"narrow"},{"name":"inhibin beta-B binding","type":"narrow"},{"name":"inhibin monomer binding","type":"exact"}],"termid":"GO:0034711"}


id: PBO:0087202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase; methylates cytosine to m5C at several positions in tRNAs and intron-containing pre-tRNAs; increases proportion of tRNALeu(CAA) with m5C at wobble position in response to hydrogen peroxide, causing selective translation of mRNA from genes enriched in TTG codon; loss of NCL1 confers hypersensitivity to oxidative stress; similar to Nop2p and human proliferation associated nucleolar protein p120","termid":"PBO:0087202"}


id: PBO:0081915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 884, pseudogene","termid":"PBO:0081915"}


id: MONDO:0000944
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"arterial occlusion","termid":"MONDO:0020673"},{"relation_name":"is_a","term_name":"cerebral artery stenosis","termid":"MONDO:1040016"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral artery occlusion","secondary_identifiers":["ICD9:434","MEDGEN:507994","ICD9:434.91","UMLS:C0028790","DOID:10127","ICD9:434.9","ICD9:434.90","SCTID:20059004"],"termid":"MONDO:0000944","xrefs":{"Monarch":{"xref_id":"0000944"}}}


id: PBO:0045089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal-less homeobox 1","termid":"PBO:0045089"}


id: PBO:0073019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short coiled-coil protein","termid":"PBO:0073019"}


id: FYECO:0000247
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which cadmium sulfate was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ CdSO4","synonyms":[{"name":"+ cadmium sulfate","type":"related"}],"termid":"FYECO:0000247"}


id: PBO:0043435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"connector enhancer of kinase suppressor of Ras 1","termid":"PBO:0043435"}


id: PBO:0055236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2663","termid":"PBO:0055236"}


id: PBO:0060832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD1 gamma-tubulin ring complex targeting factor","termid":"PBO:0060832"}


id: GO:0042003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Promotion of male sex and sexual phenotypes in the hermaphroditic nematode soma. An example of this is found in Caenorhabditis elegans.","definition_xrefs":["GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hermaphrodite somatic sex determination","termid":"GO:0042001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"masculinization of hermaphrodite soma","termid":"GO:0042003"}


id: GO:0097045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phospholipid scrambling process that results in the appearance of phosphatidylserine on the surface of activated blood platelets, and triggers the clotting system.","definition_xrefs":["GOC:bf","GOC:pr","PMID:21107324","GOC:lf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane phospholipid scrambling","termid":"GO:0017121"},{"relation_name":"is_a","term_name":"positive regulation of blood coagulation","termid":"GO:0030194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0061024","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"phosphatidylserine exposure on blood platelet","termid":"GO:0097045"}


id: PBO:0028284
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_Ku-0063794","termid":"PBO:0028284"}


id: GO:0003896
data:
  {"annotated_genes":["SJAG_04994","SJAG_00399"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98915,102442],"is_not":false,"summary":null,"term":"GO:0003896"}]},"cv_name":"molecular_function","definition":"Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. In certain conditions, for example in response to DNA damage, some primases synthesize a DNA primer.","definition_xrefs":["PMID:26184436","GOC:mcc","PMID:11395402","PMID:38203225","GOC:mah","PMID:38492718"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-directed 5'-3' RNA polymerase activity","termid":"GO:0003899"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00399":null,"SJAG_04994":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016779","GO:0016740","GO:0140098","GO:0003824"],"is_obsolete":false,"name":"DNA primase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0003897","GO:0003898"],"termid":"GO:0003896","terms_by_termid":{"GO:0003896":null}}


id: _global:positively_regulated_by
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"inverse of positively regulates","direct_ancestors":[{"relation_name":"is_a","term_name":"regulated_by","termid":"_global:regulated_by"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"positively_regulated_by","secondary_identifiers":["RO:0002336"],"termid":"_global:positively_regulated_by"}


id: GO:0101021
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: estrogen + reduced [NADPH--hemoprotein reductase] + O2 = 2-hydroxyestrogen + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["GOC:rl","PMID:14559847","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid hydroxylase activity","termid":"GO:0008395"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"estrogen 2-hydroxylase activity","synonyms":[{"name":"oestrogen 2-hydroxylase activity","type":"exact"}],"termid":"GO:0101021"}


id: GO:0060138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A reproductive process occurring in the embryo that results in birth.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"parturition","termid":"GO:0007567"},{"relation_name":"part_of","term_name":"embryo development ending in birth or egg hatching","termid":"GO:0009792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fetal process involved in parturition","termid":"GO:0060138"}


id: MONDO:1011991
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"vision disorder, non-human animal","termid":"MONDO:1011367"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rod dysplasia, non-human animal","secondary_identifiers":["OMIA:001670"],"termid":"MONDO:1011991","xrefs":{"Monarch":{"xref_id":"1011991"}}}


id: PBO:0049193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor AMPA type subunit 4","termid":"PBO:0049193"}


id: MONDO:0004942
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lymphoma that arises from the structures of the orbit. Representative examples include mucosa-associated lymphoid tissue lymphoma, follicular lymphoma, and diffuse large B-cell lymphoma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orbital cancer","termid":"MONDO:0002889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"orbit lymphoma","secondary_identifiers":["NCIT:C6244","SCTID:13048006","UMLS:C0271333","DOID:9986","GARD:9719","MESH:C537131","MEDGEN:75744"],"synonyms":[{"name":"lymphoma of orbit","type":"exact"},{"name":"lymphoma of the orbit","type":"exact"},{"name":"orbital lymphoma","type":"related"},{"name":"primary orbit lymphoma","type":"exact"},{"name":"primary orbital lymphoma","type":"related"}],"termid":"MONDO:0004942","xrefs":{"Monarch":{"xref_id":"0004942"}}}


id: PBO:0062277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily H member 8 (gene/pseudogene)","termid":"PBO:0062277"}


id: PBO:0069850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1136, pseudogene","termid":"PBO:0069850"}


id: GO:1901156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving neomycin.","definition_xrefs":["GOC:TermGenie","UniPathway:UPA00969","GOC:yaf","MetaCyc:PWY-7016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol metabolic process","termid":"GO:0019751"},{"relation_name":"is_a","term_name":"aminoglycoside antibiotic metabolic process","termid":"GO:0030647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"neomycin metabolic process","synonyms":[{"name":"neomycin metabolism","type":"exact"}],"termid":"GO:1901156"}


id: FYPO:0003918
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the degradation of messenger RNA (mRNA) molecules that contain nonsense mutations does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nonsense-mediated decay","termid":"FYPO:0003916"},{"relation_name":"is_a","term_name":"abolished nuclear mRNA catabolic process","termid":"FYPO:0003934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0006551","FYPO:0000294","FYPO:0005447"],"is_obsolete":false,"name":"abolished nonsense-mediated decay","synonyms":[{"name":"abolished NMD","type":"exact"},{"name":"abolished nonsense-mediated decay during mitotic cell cycle","type":"related"},{"name":"abolished nonsense-mediated decay during vegetative growth","type":"exact"},{"name":"abolished nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","type":"exact"},{"name":"nonsense-mediated decay abolished","type":"exact"}],"termid":"FYPO:0003918"}


id: PBO:0055987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LRRTM4 antisense RNA 1","termid":"PBO:0055987"}


id: GO:0009637
data:
  {"annotated_genes":["SJAG_02860","SJAG_05242"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65714],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009785"},{"annotations":[118678,118679],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071483"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.","definition_xrefs":["GOC:ai","GOC:mtg_far_red"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to light stimulus","termid":"GO:0009416"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02860":null,"SJAG_05242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to blue light","references_by_uniquename":{"GO_REF:0000108":null,"PMID:23873862":null},"synonyms":[{"name":"blue light response","type":"exact"},{"name":"blue-light response","type":"exact"},{"name":"response to blue light stimulus","type":"exact"}],"termid":"GO:0009637","terms_by_termid":{"GO:0009785":null,"GO:0071483":null}}


id: PBO:0039969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 4A","termid":"PBO:0039969"}


id: GO:0018466
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (1S,2S,4R)-limonene-1,2-diol + DCPIP+ = DCPIPH + H+ + (1S,4R)-1-hydroxy-2-oxolimonene.","definition_xrefs":["UM-BBD_reactionID:r0735"],"gene_count":0,"genotype_count":0,"name":"obsolete limonene-1,2-diol dehydrogenase activity (obsolete GO:0018466)","termid":"GO:0018466"}


id: MONDO:0019626
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Isolated ankyloblepharon filiforme adnatum (AFA) is characterized by the presence of single or multiple thin bands of connective tissue between the upper and lower eyelids, preventing full opening of the eye. Several cases have been reported. It can occur sporadically or following an autosomal dominant transmission pattern. In some cases, AFA can be associated with other disorders, such as trisomy 18. The bands should be removed to avoid amblyopia and this can easily be performed in the neonatal period by cutting with tissue scissors.","definition_xrefs":["Orphanet:91397"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome or malformation associated with head and neck malformations (obsolete MONDO:0015501)","termid":"MONDO:0015501"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"isolated ankyloblepharon filiforme adnatum","secondary_identifiers":["MEDGEN:227001","UMLS:C1302999","GARD:19168","icd11.foundation:1002292151"],"termid":"MONDO:0019626","xrefs":{"Monarch":{"xref_id":"0019626"}}}


id: PBO:0081603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 527","termid":"PBO:0081603"}


id: PBO:0088485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribonuclease III, endonuclease domain superfamily","termid":"PBO:0088485"}


id: MONDO:0008384
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A particular variant of polyarthritis associated with early manifestations of palindromic rheumatism, radiologic subchondral bone cysts, and subcutaneous rheumatoid nodules.","definition_xrefs":["PMID:17041479"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyarticular arthritis","termid":"MONDO:0024280"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rheumatoid nodulosis","secondary_identifiers":["UMLS:C0035450","MEDGEN:19781","OMIM:180350","SCTID:402426007","MESH:D012218","SCTID:402427003"],"synonyms":[{"name":"accelerated rheumatoid nodulosis","type":"exact"},{"name":"rheumatoid nodulosis","type":"exact"}],"termid":"MONDO:0008384","xrefs":{"Monarch":{"xref_id":"0008384"}}}


id: GO:0006310
data:
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ll,"term":"GO:1905263"},{"annotations":[91683],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0045951"},{"annotations":[88575],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0010845"},{"annotations":[104347,96422,100074,92256,103352,101014,88576,90318,89850,116550,107439,92184,92751,118200,103813,104319,94253,114981,89801,100041,100635,89109,107132,110577,88807,100139,106192,90983,88064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007131"},{"annotations":[103910],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045458"},{"annotations":[111036,102680,100140,98565],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036298"},{"annotations":[108014,97753,95518,101819,96998,103353,90319],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000725"},{"annotations":[108542,109781],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0000018"},{"annotations":[108776],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0010569"},{"annotations":[115731,88681,93884],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0010520"},{"annotations":[89563,74771,116314,95746],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990414"},{"annotations":[108544,105663,101016,116552,76405,116890,118201,107612,109782,116739],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000712"},{"annotations":[95520],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071140"},{"annotations":[115680],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0062209"},{"annotations":[112389,112391,111184,95683,112393,92238,92237,88685,112390,92236,112392,92235],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000722"}]},"cv_name":"biological_process","definition":"Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. 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id: GO:0035519
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 29 of the ubiquitin monomers, is added to a protein. K29-linked ubiquitination targets the substrate protein for degradation.","definition_xrefs":["PMID:17028573"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein polyubiquitination","termid":"GO:0000209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"protein K29-linked ubiquitination","synonyms":[{"name":"protein K29-linked polyubiquitination","type":"exact"}],"termid":"GO:0035519"}


id: MONDO:0006888
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A diffuse or multifocal peripheral neuropathy caused by the effects of a distant neoplasm. It may be attributed, in part, to the immune response to neoplasm-elaborated proteins. The neuropathy may be sensory, motor, mixed or autonomic. It may be the initial presentation of an occult neoplasm. Detection and resection of the neoplasm may result in cure.","definition_xrefs":["NCIT:C3981"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete inflammatory and toxic neuropathy (obsolete MONDO:0002336)","termid":"MONDO:0002336"},{"relation_name":"is_a","term_name":"polyneuropathy","termid":"MONDO:0001824"},{"relation_name":"is_a","term_name":"paraneoplastic neurologic syndrome","termid":"MONDO:0018215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"paraneoplastic polyneuropathy","secondary_identifiers":["UMLS:C0270932","DOID:8681","ICD9:357.3","MedDRA:10062289","MEDGEN:124380","MESH:D020364","SCTID:77659000"],"synonyms":[{"name":"paraneoplastic polyneuropathy","type":"exact"}],"termid":"MONDO:0006888","xrefs":{"Monarch":{"xref_id":"0006888"}}}


id: GO:0042996
data:
  {"annotated_genes":["SJAG_03970"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87604],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042997"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the transport of proteins from the Golgi to the plasma membrane.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein transport","termid":"GO:0051223"},{"relation_name":"is_a","term_name":"regulation of vesicle-mediated transport","termid":"GO:0060627"},{"relation_name":"is_a","term_name":"regulation of protein localization to plasma membrane","termid":"GO:1903076"},{"relation_name":"regulates","term_name":"Golgi to plasma membrane protein transport","termid":"GO:0043001"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03970":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"regulation of Golgi to plasma membrane protein transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0042996","terms_by_termid":{"GO:0042997":null}}


id: GO:0044640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant negative regulation of complement activation via the lectin pathway in the bitten/stung organism.","definition_xrefs":["GOC:fj","GOC:jl","PMID:20837040"],"gene_count":0,"genotype_count":0,"name":"obsolete envenomation resulting in negative regulation of complement activation, lectin pathway in another organism (obsolete GO:0044640)","synonyms":[{"name":"envenomation resulting in negative regulation of complement activation, lectin pathway in other organism","type":"exact"}],"termid":"GO:0044640"}


id: PBO:0066637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RIMS binding protein 3C","termid":"PBO:0066637"}


id: PBO:0069115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 364, pseudogene","termid":"PBO:0069115"}


id: PBO:0047588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor receptor like 1","termid":"PBO:0047588"}


id: GO:1902120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of meiotic spindle elongation.","definition_xrefs":["PMID:23370392","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of meiotic nuclear division","termid":"GO:0045835"},{"relation_name":"is_a","term_name":"regulation of meiotic spindle elongation","termid":"GO:1902119"},{"relation_name":"negatively_regulates","term_name":"meiotic spindle elongation","termid":"GO:0051232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0140013"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0140013"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0140013","GO:0008150"],"is_obsolete":false,"name":"negative regulation of meiotic spindle elongation","synonyms":[{"name":"down regulation of meiotic spindle elongation","type":"exact"},{"name":"down regulation of spindle elongation during meiosis","type":"exact"},{"name":"down-regulation of meiotic spindle elongation","type":"exact"},{"name":"down-regulation of spindle elongation during meiosis","type":"exact"},{"name":"downregulation of meiotic spindle elongation","type":"exact"},{"name":"downregulation of spindle elongation during meiosis","type":"exact"},{"name":"inhibition of meiotic spindle elongation","type":"narrow"},{"name":"inhibition of spindle elongation during meiosis","type":"exact"},{"name":"negative regulation of spindle elongation during meiosis","type":"exact"}],"termid":"GO:1902120"}


id: FYPO:0001470
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing tacrolimus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000003","FYPO:0002060","FYPO:0002057","FYPO:0000139","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on tacrolimus","synonyms":[{"name":"normal cell population growth in presence of tacrolimus","type":"exact"},{"name":"normal cell population growth on tacrolimus","type":"exact"},{"name":"normal cellular response to FK506","type":"exact"},{"name":"normal cellular response to tacrolimus","type":"related"},{"name":"normal vegetative cell population growth on tacrolimus","type":"exact"}],"termid":"FYPO:0001470"}


id: PBO:0041522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 16 open reading frame 74","termid":"PBO:0041522"}


id: GO:0140642
data:
  {"annotated_genes":["SJAG_03073","SJAG_01613"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98724,100923],"is_not":false,"summary":null,"term":"GO:0140642"}]},"cv_name":"biological_process","definition":"The spindle organization process in which the spindle is maintained at a constant length during meiotic metaphase.","definition_xrefs":["PMID:32723864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic spindle assembly","termid":"GO:0090306"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01613":null,"SJAG_03073":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0000226","GO:0007049","GO:0008150","GO:0044085","GO:0140013","GO:0007010"],"is_obsolete":false,"name":"meiotic spindle formation (spindle phase two)","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140642","terms_by_termid":{"GO:0140642":null}}


id: GO:0043941
data:
  {"annotated_genes":["SJAG_04853","SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101779],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075296"},{"annotations":[90242],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903024"}]},"cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of the formation of cellular spores derived from the products of meiosis.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043940"},{"relation_name":"is_a","term_name":"positive regulation of sporulation resulting in formation of a cellular spore","termid":"GO:0045881"},{"relation_name":"is_a","term_name":"positive regulation of meiotic cell cycle","termid":"GO:0051446"},{"relation_name":"positively_regulates","term_name":"sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043935"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02169":null,"SJAG_04853":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of sexual sporulation resulting in formation of a cellular spore","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043941","terms_by_termid":{"GO:0075296":null,"GO:1903024":null}}


id: GO:0106155
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protein L-lysine + 2-oxoglutarate + O2 = protein 3-hydroxy-L-lysine + succinate + CO2.","definition_xrefs":["RHEA:57152","PMID:29915238","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140096","GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"peptidyl-lysine 3-dioxygenase activity","secondary_identifiers":["Reactome:R-HSA-9629578","EC:1.14.11.63","Reactome:R-HSA-9629591"],"termid":"GO:0106155"}


id: MONDO:0016327
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial disease with hypertrophic cardiomyopathy (obsolete MONDO:0016327)","secondary_identifiers":["Orphanet:217587"],"termid":"MONDO:0016327","xrefs":{"Monarch":{"xref_id":"0016327"}}}


id: PBO:0081096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type palmitoyltransferase 21","termid":"PBO:0081096"}


id: MONDO:0013860
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Idiopathic membranous glomerulonephritis (IMG) is a primary glomerular disease characterized by proteinuria, usually in the nephrotic range, with preserved renal function.","definition_xrefs":["Orphanet:97560"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary nephritis","termid":"MONDO:0005334"},{"relation_name":"is_a","term_name":"membranous glomerulonephritis","termid":"MONDO:0005376"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"idiopathic membranous glomerulonephritis","secondary_identifiers":["SCTID:722119002","OMIM:614692","UMLS:C0086445","MEDGEN:39226","GARD:9180","NCIT:C123060"],"synonyms":[{"name":"Extramembranous glomerulonephritis","type":"related"},{"name":"Idiopathic membranous glomerulopathy","type":"related"},{"name":"MBNP","type":"related"},{"name":"MGN","type":"related"},{"name":"glomerulonephritis, membranous","type":"related"},{"name":"idiopathic membranous nephropathy","type":"related"},{"name":"membranous GN","type":"related"},{"name":"membranous nephropathy - Idiopathic","type":"exact"},{"name":"membranous nephropathy, susceptibility to","type":"related"}],"termid":"MONDO:0013860","xrefs":{"Monarch":{"xref_id":"0013860"}}}


id: MONDO:0012433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Senior-Loken syndrome in which the cause of the disease is a mutation in the CEP290 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Senior-Loken syndrome","termid":"MONDO:0017842"},{"relation_name":"is_a","term_name":"CEP290-related ciliopathy","termid":"MONDO:0100451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005240"],"is_obsolete":false,"name":"Senior-Loken syndrome 6","secondary_identifiers":["OMIM:610189","MESH:C565708","MEDGEN:387907","GARD:15476","UMLS:C1857779"],"synonyms":[{"name":"CEP290 Senior-Loken syndrome","type":"exact"},{"name":"SENIOR-Loken syndrome 6","type":"related"},{"name":"SLSN6","type":"related"},{"name":"Senior-Loken syndrome 6","type":"exact"},{"name":"Senior-Loken syndrome caused by mutation in CEP290","type":"exact"},{"name":"Senior-Loken syndrome type 6","type":"exact"}],"termid":"MONDO:0012433","xrefs":{"Monarch":{"xref_id":"0012433"}}}


id: MONDO:1011708
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dyserythropoietic anemia and myopathy syndrome, non-human animal","secondary_identifiers":["OMIA:002564"],"termid":"MONDO:1011708","xrefs":{"Monarch":{"xref_id":"1011708"}}}


id: MONDO:0958115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined immunodeficiency","termid":"MONDO:0015131"},{"relation_name":"is_a","term_name":"hyper-IgE syndrome","termid":"MONDO:0018037"},{"relation_name":"is_a","term_name":"bent bone dysplasia","termid":"MONDO:0019698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"autosomal recessive combined immunodeficiency due to complete IL6ST deficiency","secondary_identifiers":["Orphanet:656283"],"termid":"MONDO:0958115","xrefs":{"Monarch":{"xref_id":"0958115"}}}


id: PBO:0002306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-CHY","termid":"PBO:0002306"}


id: PBO:0067285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 368, pseudogene","termid":"PBO:0067285"}


id: PBO:0003609
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.3.1.1","termid":"PBO:0003609"}


id: PBO:0052154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium inwardly rectifying channel subfamily J member 3","termid":"PBO:0052154"}


id: PBO:0000730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate-semialdehyde dehydrogenase (predicted)","termid":"PBO:0000730"}


id: GO:1990826
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Nucleoplasm situated in close proximity and peripheral to a nuclear pore complex.","definition_xrefs":["PMID:10633080"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nucleoplasm","termid":"GO:0005654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005654","GO:0005575"],"is_obsolete":false,"name":"nucleoplasmic periphery of the nuclear pore complex","synonyms":[{"name":"associated with the nuclear pore","type":"related"}],"termid":"GO:1990826"}


id: PBO:0057944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3668","termid":"PBO:0057944"}


id: PBO:0089515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA (guanine-N7-)-methyltransferase Bud23","termid":"PBO:0089515"}


id: PBO:0005782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lunapark homolog","termid":"PBO:0005782"}


id: MONDO:0021747
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infectious disease involving the Acanthamoeba.","definition_xrefs":["MONDO:patterns/infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infectious disease","termid":"MONDO:0005550"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Acanthamoeba infectious disease","secondary_identifiers":["SCTID:49649001"],"synonyms":[{"name":"Acanthamoeba infection","type":"exact"},{"name":"acanthamoebiasis","type":"related"},{"name":"acanthamoebosis","type":"related"},{"name":"infection by Acanthamoeba","type":"exact"},{"name":"infection caused by Acanthamoeba","type":"related"},{"name":"infections, Acanthamoeba","type":"related"}],"termid":"MONDO:0021747","xrefs":{"Monarch":{"xref_id":"0021747"}}}


id: GO:0019566
data:
  {"annotated_genes":["SJAG_04660","SJAG_02010","SJAG_03958"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95255,100672,94521],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019568"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving arabinose, arabino-pentose. L-Arabinose occurs both free, for example in the heartwood of many conifers, and in the combined state, as a constituent of plant hemicelluloses, bacterial polysaccharides etc. D-arabinose is a constituent of arabinonucleosides.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentose metabolic process","termid":"GO:0019321"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02010":null,"SJAG_03958":null,"SJAG_04660":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"arabinose metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"arabinose metabolism","type":"exact"}],"termid":"GO:0019566","terms_by_termid":{"GO:0019568":null}}


id: GO:0160195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of phospholipase C/protein kinase C signal transduction.","definition_xrefs":["PMID:32033984"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular signal transduction","termid":"GO:1902532"},{"relation_name":"negatively_regulates","term_name":"phospholipase C/protein kinase C signal transduction","termid":"GO:0141212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of phospholipase C/protein kinase C signal transduction","synonyms":[{"name":"negative regulation of PLC/PKC signal transduction","type":"exact"}],"termid":"GO:0160195"}


id: PATO:0002398
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0002398 <new term> (obsolete PATO:0002398)","termid":"PATO:0002398"}


id: PBO:0030198
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_cytochalasin_B","termid":"PBO:0030198"}


id: PBO:0077664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor superfamily member 11a","termid":"PBO:0077664"}


id: PBO:0110463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACO2 pseudogene 2","termid":"PBO:0110463"}


id: GO:0097589
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A non-membrane-bounded organelle superficially similar to a bacterial-type flagellum; they both consist of filaments extending outside the cell, and rotate to propel the cell, but the archaeal flagella (also called archaella) have a unique structure which lacks a central channel. Similar to bacterial type IV pilins, the archaeal flagellins (archaellins) are made with class 3 signal peptides and they are processed by a type IV prepilin peptidase-like enzyme. The archaellins are typically modified by the addition of N-linked glycans which are necessary for proper assembly and/or function.","definition_xrefs":["GOC:krc","PMID:23146836","PMID:24330313","Wikipedia:Flagellum#Archaeal","PMID:23204365","PMID:21265748","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection","termid":"GO:0042995"},{"relation_name":"is_a","term_name":"membraneless organelle","termid":"GO:0043228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"archaeal-type flagellum","synonyms":[{"name":"archaeal flagellum","type":"related"},{"name":"archaella","type":"related"},{"name":"archaellum","type":"exact"}],"termid":"GO:0097589"}


id: PBO:0046298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"empty spiracles homeobox 1","termid":"PBO:0046298"}


id: PBO:0058513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5701-3","termid":"PBO:0058513"}


id: GO:0034000
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endolytic cleavage of beta-1,4-galactosaminic bonds between N-acetylgalactosamine and either D-glucuronic acid or L-iduronic acid to produce a mixture of Delta4-unsaturated oligosaccharides of different sizes that are ultimately degraded to Delta4-unsaturated tetra- and disaccharides.","definition_xrefs":["EC:4.2.2.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"chondroitin-sulfate-ABC endolyase activity","synonyms":[{"name":"ChS ABC lyase I activity","type":"related"},{"name":"ChS ABC lyase activity","type":"broad"},{"name":"chondroitin ABC eliminase activity","type":"broad"},{"name":"chondroitin sulfate ABC endoeliminase activity","type":"related"},{"name":"chondroitin sulfate ABC endolyase activity","type":"related"},{"name":"chondroitin sulfate ABC lyase activity","type":"broad"},{"name":"chondroitinase ABC activity","type":"broad"},{"name":"chondroitinase activity","type":"broad"}],"termid":"GO:0034000"}


id: PBO:0080999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 37","termid":"PBO:0080999"}


id: PBO:0074111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 29 member 3","termid":"PBO:0074111"}


id: GO:0046668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of programmed cell death that occurs in the retina.","definition_xrefs":["GOC:ai","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of programmed cell death","termid":"GO:0043067"},{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"retinal cell programmed cell death","termid":"GO:0046666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of retinal cell programmed cell death","synonyms":[{"name":"regulation of retinal programmed cell death","type":"exact"}],"termid":"GO:0046668"}


id: MONDO:0009672
data:
  {"annotated_genes":["SJAG_03894"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85578],"is_not":false,"summary":null,"term":"MONDO:0009672"}]},"cv_name":"mondo","definition":"Proximal spinal muscular atrophy type 3 (SMA3) is a relatively mild form of proximal spinal muscular atrophy characterized by muscle weakness and hypotonia resulting from the degeneration and loss of the lower motor neurons in the spinal cord and the brain stem nuclei.","definition_xrefs":["Orphanet:83419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proximal spinal muscular atrophy","termid":"MONDO:0019079"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03894":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005244"],"is_obsolete":false,"name":"spinal muscular atrophy, type III","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:54280009","MEDGEN:101816","UMLS:C0152109","GARD:198","OMIM:253400","NANDO:1200006","NORD:1342","icd11.foundation:677572815","NCIT:C118847","ICD9:335.11","DOID:12376"],"synonyms":[{"name":"KWS","type":"related"},{"name":"Kugelberg Welander Syndrome","type":"exact"},{"name":"Kugelberg-Welander disease","type":"exact"},{"name":"Kugelberg-Welander syndrome","type":"related"},{"name":"SMA 3","type":"related"},{"name":"SMA type 3","type":"exact"},{"name":"SMA type III","type":"exact"},{"name":"SMA-III","type":"exact"},{"name":"SMA3","type":"exact"},{"name":"Sma 3","type":"related"},{"name":"childhood spinal muscular atrophy","type":"broad"},{"name":"juvenile spinal muscular atrophy","type":"broad"},{"name":"muscular atrophy, juvenile","type":"related"},{"name":"paediatric spinal muscular atrophy","type":"related"},{"name":"pediatric spinal muscular atrophy","type":"related"},{"name":"proximal spinal muscular atrophy type 3","type":"related"},{"name":"spinal muscular atrophy III","type":"exact"},{"name":"spinal muscular atrophy of childhood","type":"related"},{"name":"spinal muscular atrophy type 3","type":"exact"},{"name":"spinal muscular atrophy, familial","type":"exact"},{"name":"spinal muscular atrophy, mild childhood and adolescent form","type":"related"},{"name":"spinal muscular atrophy, type 3","type":"related"},{"name":"spinal muscular atrophy, type III","type":"exact"},{"name":"spinal muscular atrophy, type III, modifier of","type":"exact"},{"name":"spinal muscular atrophy-3","type":"exact"},{"name":"type III spinal muscular atrophy","type":"exact"}],"termid":"MONDO:0009672","terms_by_termid":{"MONDO:0009672":null},"xrefs":{"Monarch":{"xref_id":"0009672"}}}


id: GO:0035384
data:
  {"annotated_genes":["SJAG_03731","SJAG_01139","SJAG_00982","SJAG_02158","SJAG_00866","SJAG_02006","SJAG_03064","SJAG_03310","SJAG_03290","SJAG_04007","SJAG_02741","SJAG_03313","SJAG_01402"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92759,97882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006085"},{"annotations":[115540],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019427"},{"annotations":[116493],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990181"},{"annotations":[117894,94507,87369,86944,108052,113680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006086"},{"annotations":[106939],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035338"},{"annotations":[97862],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001295"},{"annotations":[98532],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0010510"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioester metabolic process","termid":"GO:0035383"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00866":null,"SJAG_00982":null,"SJAG_01139":null,"SJAG_01402":null,"SJAG_02006":null,"SJAG_02158":null,"SJAG_02741":null,"SJAG_03064":null,"SJAG_03290":null,"SJAG_03310":null,"SJAG_03313":null,"SJAG_03731":null,"SJAG_04007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"thioester biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"thioester anabolism","type":"exact"},{"name":"thioester biosynthesis","type":"exact"},{"name":"thioester formation","type":"exact"},{"name":"thioester synthesis","type":"exact"}],"termid":"GO:0035384","terms_by_termid":{"GO:0006085":null,"GO:0006086":null,"GO:0010510":null,"GO:0019427":null,"GO:0035338":null,"GO:1990181":null,"GO:2001295":null}}


id: GO:0097248
data:
  {"annotated_genes":["SJAG_00030","SJAG_01738","SJAG_00661","SJAG_01017"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93528,99666,104129,110314],"is_not":false,"summary":null,"term":"GO:0097248"}]},"cv_name":"biological_process","definition":"A process in which a protein or protein complex is maintained in a specific location in the cell cortex of a cell tip, and is prevented from moving elsewhere. The cell cortex of a cell tip is the region directly beneath the plasma membrane at either end of the longest axis of a cylindrical or elongated cell.","definition_xrefs":["GOC:al","PMID:19646873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of protein location in cell cortex","termid":"GO:0032065"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00030":null,"SJAG_00661":null,"SJAG_01017":null,"SJAG_01738":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"maintenance of protein location in cell cortex of cell tip","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0097248","terms_by_termid":{"GO:0097248":null}}


id: GO:0097034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The biogenesis of a mitochondrial respiratory chain complex IV (also known as cytochrome c oxidase complex), a protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Includes the synthesis of constituent proteins and their aggregation, arrangement and bonding together.","definition_xrefs":["GOC:mcc"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial respiratory chain complex IV biogenesis (obsolete GO:0097034)","synonyms":[{"name":"mitochondrial cytochrome c oxidase complex biogenesis","type":"exact"}],"termid":"GO:0097034"}


id: MONDO:0008771
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extremely rare syndrome which is characterized by hypoplastic amelogenesis imperfecta (hypoplastic dental enamel) and nephrocalcinosis (precipitation of calcium salts in renal tissue). Oral manifestations include yellow and misshaped teeth, delayed tooth eruption, and intrapulpal calcifications. Nephrocalcinosis is often asymptomatic but can progress during late childhood or early adulthood to impaired renal function (e.g. recurrent urinary infections and renal tubular acidosis), and rarely to end-stage renal failure.","definition_xrefs":["Orphanet:1031"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"amelogenesis imperfecta","termid":"MONDO:0019507"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenesis imperfecta type 1G","secondary_identifiers":["GARD:646","DOID:0110066","OMIM:614253","SCTID:109477002","ICD9:520.5","UMLS:C2931783","MESH:C538241","OMIM:204690","Orphanet:171836","MEDGEN:419162"],"synonyms":[{"name":"AI1G","type":"exact"},{"name":"AIGFS","type":"exact"},{"name":"ERS","type":"exact"},{"name":"FAM20A amelogenesis imperfecta","type":"exact"},{"name":"absent enamel, nephrocalcinosis and apparently normal calcium metabolism","type":"related"},{"name":"amelogenesis imperfecta and gingival fibromatosis syndrome","type":"exact"},{"name":"amelogenesis imperfecta and nephrocalcinosis","type":"related"},{"name":"amelogenesis imperfecta caused by mutation in FAM20A","type":"exact"},{"name":"amelogenesis imperfecta hypoplastic type, IG","type":"related"},{"name":"amelogenesis imperfecta hypoplastic with nephrocalcinosis","type":"exact"},{"name":"amelogenesis imperfecta nephrocalcinosis","type":"related"},{"name":"amelogenesis imperfecta type IG","type":"exact"},{"name":"amelogenesis imperfecta, hypoplastic, with nephrocalcinosis","type":"related"},{"name":"amelogenesis imperfecta, type IG","type":"related"},{"name":"amelogenesis imperfecta, type IG (enamel-renal syndrome)","type":"exact"},{"name":"amelogenesis imperfecta-gingival hyperplasia syndrome","type":"exact"},{"name":"amelogenesis imperfecta-nephrocalcinosis syndrome","type":"related"},{"name":"enamel renal syndrome","type":"related"},{"name":"enamel-renal syndrome","type":"exact"},{"name":"enamel-renal-gingival syndrome","type":"exact"},{"name":"ers","type":"exact"},{"name":"generalised enamel hypoplasia and renal dysfunction","type":"related"},{"name":"generalized enamel hypoplasia and renal dysfunction","type":"related"}],"termid":"MONDO:0008771","xrefs":{"Monarch":{"xref_id":"0008771"}}}


id: MONDO:0958199
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Lafora disease in which the cause of the disease is a variation in the EPM2A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Lafora disease","termid":"MONDO:0009697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027","MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"myoclonic epilepsy of Lafora 1","secondary_identifiers":["OMIM:254780","UMLS:C5848203","MEDGEN:1844054"],"termid":"MONDO:0958199","xrefs":{"Monarch":{"xref_id":"0958199"}}}


id: GO:0086086
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of an AV node cardiac muscle cell contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated potassium channel activity involved in cardiac muscle cell action potential repolarization","termid":"GO:0086008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"voltage-gated potassium channel activity involved in AV node cell action potential repolarization","synonyms":[{"name":"voltage-gated potassium channel activity involved in AV node cardiac muscle cell action potential repolarization","type":"exact"},{"name":"voltage-gated potassium channel activity involved in atrioventricular node cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0086086"}


id: MONDO:0013030
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial isolated dilated cardiomyopathy in which the cause of the disease is a mutation in the DSG2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"dilated cardiomyopathy 1BB","secondary_identifiers":["DOID:0110458","MEDGEN:414552","MESH:C567877","GARD:15588","OMIM:612877","UMLS:C2752072"],"synonyms":[{"name":"CMD1BB","type":"exact"},{"name":"DSG2 familial isolated dilated cardiomyopathy","type":"exact"},{"name":"cardiomyopathy, dilated, 1BB","type":"related"},{"name":"cardiomyopathy, dilated, type 1Bb","type":"exact"},{"name":"dilated cardiomyopathy type 1BB","type":"exact"},{"name":"familial isolated dilated cardiomyopathy caused by mutation in DSG2","type":"exact"}],"termid":"MONDO:0013030","xrefs":{"Monarch":{"xref_id":"0013030"}}}


id: MONDO:0001670
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Resorption of calcified dental tissue, involving demineralization due to reversal of the cation exchange and lacunar resorption by osteoclasts. There are two types: external (as a result of tooth pathology) and internal (apparently initiated by a peculiar inflammatory hyperplasia of the pulp). (From Jablonski, Dictionary of Dentistry, 1992, p676)","definition_xrefs":["MESH:D014091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tooth hard tissue disease","termid":"MONDO:0002220"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tooth resorption","secondary_identifiers":["ICD9:521.4","UMLS:C0040451","SCTID:70931000","DOID:13240","MEDGEN:21587"],"termid":"MONDO:0001670","xrefs":{"Monarch":{"xref_id":"0001670"}}}


id: PBO:0082912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytidine deaminase; catalyzes the modification of cytidine to uridine in vitro but native RNA substrates have not been identified, localizes to both the nucleus and cytoplasm","termid":"PBO:0082912"}


id: GO:0008948
data:
  {"annotated_genes":["SJAG_02176"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[117944],"is_not":false,"summary":null,"term":"GO:0008948"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + oxaloacetate = CO2 + pyruvate.","definition_xrefs":["RHEA:15641"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02176":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxaloacetate decarboxylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R00217","EC:4.1.1.112","Reactome:R-HSA-9012016","MetaCyc:OXALODECARB-RXN","Reactome:R-HSA-9861660"],"synonyms":[{"name":"oxalacetic acid decarboxylase activity","type":"exact"},{"name":"oxalate beta-decarboxylase activity","type":"related"},{"name":"oxaloacetate beta-decarboxylase activity","type":"related"},{"name":"oxaloacetate carboxy-lyase (pyruvate-forming)","type":"exact"},{"name":"oxaloacetate carboxy-lyase activity","type":"related"}],"termid":"GO:0008948","terms_by_termid":{"GO:0008948":null}}


id: GO:1904173
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of histone demethylase activity (H3-K4 specific).","definition_xrefs":["GO_REF:0000059","PMID:24843136","GOC:dph","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone demethylase activity (H3-K4 specific) (obsolete GO:1904173)","termid":"GO:1904173"}


id: PBO:0047439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FCF1 pseudogene 10","termid":"PBO:0047439"}


id: PBO:0087284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Signal recognition particle (SRP) subunit; interacts with the RNA component of SRP to form the Alu domain, which is the region of SRP responsible for arrest of nascent chain elongation during membrane targeting; homolog of mammalian SRP14","termid":"PBO:0087284"}


id: PBO:0087066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L32; overexpression disrupts telomeric silencing; homologous to mammalian ribosomal protein L32, no bacterial homolog","termid":"PBO:0087066"}


id: PBO:0071967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 kinase A6","termid":"PBO:0071967"}


id: MONDO:1010119
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Scleroderma that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder, non-human animal","termid":"MONDO:0700106"},{"relation_name":"is_a","term_name":"connective tissue disorder, non-human animal","termid":"MONDO:1011309"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scleroderma, non-human animal","secondary_identifiers":["OMIA:001202"],"termid":"MONDO:1010119","xrefs":{"Monarch":{"xref_id":"1010119"}}}


id: GO:0072397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about the formation and integrity of cytokinetic structures, such as the contractile ring, is received and converted into a molecular signal, contributing to a cytokinesis checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of stimulus involved in cytokinesis checkpoint (obsolete GO:0072397)","synonyms":[{"name":"cytokinesis checkpoint sensor mechanism","type":"related"},{"name":"cytokinesis checkpoint sensor process","type":"related"},{"name":"detection of stimulus involved in septin checkpoint","type":"related"},{"name":"sensing involved in cytokinesis checkpoint","type":"related"},{"name":"sensing involved in septin checkpoint","type":"related"},{"name":"septin checkpoint sensor mechanism","type":"related"},{"name":"septin checkpoint sensor process","type":"related"}],"termid":"GO:0072397"}


id: PBO:0053565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 578","termid":"PBO:0053565"}


id: GO:0036461
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a BLOC-2 complex, a protein complex required for the biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes and platelet dense granules.","definition_xrefs":["GOC:PARL","GOC:bf","PMID:22511774"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"BLOC-2 complex binding","termid":"GO:0036461"}


id: GO:0001308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process, which occurs as a dividing cell ages, leading to expression of genes that are typically not expressed due to silencing by regulatory proteins.","definition_xrefs":["PMID:12044934","GOC:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of chromatin silencing involved in replicative cell aging (obsolete GO:0001308)","synonyms":[{"name":"loss of chromatin silencing during replicative cell ageing","type":"related"},{"name":"loss of chromatin silencing involved in replicative cell aging","type":"exact"}],"termid":"GO:0001308"}


id: PBO:0085397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane (PM) ubiquitin ligase-substrate adaptor; involved in cell wall chitin deposition; ubiquitinates and down-regulates chitin synthase Chs3p abundance at PM via calcineurin/Crz1 signaling pathway which regulates RCR1 expression; delivered to PM by exomer complex using novel PM sorting motif; RCR1 has a paralog, RCR2, that arose from the whole genome duplication","termid":"PBO:0085397"}


id: GO:2000043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cardiac cell fate specification.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell fate specification","termid":"GO:0042659"},{"relation_name":"is_a","term_name":"regulation of cardiocyte differentiation","termid":"GO:1905207"},{"relation_name":"regulates","term_name":"cardiac cell fate specification","termid":"GO:0060912"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cardiac cell fate specification","termid":"GO:2000043"}


id: PBO:0031254
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_spindle_assembly","termid":"PBO:0031254"}


id: MONDO:1011531
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hyperadrenocorticism that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperadrenocorticism, non-human animal","termid":"MONDO:1011403"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperadrenocorticism, domestic cat","secondary_identifiers":["OMIA:000494-9685"],"termid":"MONDO:1011531","xrefs":{"Monarch":{"xref_id":"1011531"}}}


id: GO:0005130
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a granulocyte colony-stimulating factor receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"},{"relation_name":"is_a","term_name":"growth factor receptor binding","termid":"GO:0070851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"granulocyte colony-stimulating factor receptor binding","synonyms":[{"name":"G-CSF receptor ligand","type":"exact"},{"name":"GC-SF receptor ligand","type":"exact"},{"name":"granulocyte colony stimulating factor receptor binding","type":"exact"},{"name":"granulocyte colony-stimulating factor","type":"narrow"},{"name":"granulocyte colony-stimulating factor receptor ligand","type":"narrow"}],"termid":"GO:0005130"}


id: GO:0031230
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the cell outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:mtg_sensu","GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of cell outer membrane (obsolete GO:0031230)","synonyms":[{"name":"intrinsic to cell outer membrane","type":"narrow"}],"termid":"GO:0031230"}


id: MONDO:1012250
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spastic lameness, non-human animal","termid":"MONDO:1011794"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spastic lameness, cattle","secondary_identifiers":["OMIA:000926-9913"],"termid":"MONDO:1012250","xrefs":{"Monarch":{"xref_id":"1012250"}}}


id: PBO:0072951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-phase cancer associated transcript 2","termid":"PBO:0072951"}


id: PBO:0034149
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-child_nucleus_of","termid":"PBO:0034149"}


id: GO:0035299
data:
  {"annotated_genes":["SJAG_01148"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[116451],"is_not":false,"summary":null,"term":"GO:0035299"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ATP = 1D-myo-inositol hexakisphosphate + ADP + H+.","definition_xrefs":["RHEA:20313"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol pentakisphosphate kinase activity","termid":"GO:0120517"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01148":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016301","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"inositol-1,3,4,5,6-pentakisphosphate 2-kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R05202","Reactome:R-HSA-1855176","EC:2.7.1.158","MetaCyc:RXN-7163","Reactome:R-HSA-1855179"],"synonyms":[{"name":"IP5 2-kinase activity","type":"related"},{"name":"Ins(1,3,4,5,6)P5 2-kinase activity","type":"related"},{"name":"inositol hexakisphosphate synthase","type":"related"},{"name":"inositol pentakisphosphate 2-kinase activity","type":"exact"},{"name":"inositol polyphosphate kinase activity","type":"related"},{"name":"inositol-pentakisphosphate 2-kinase activity","type":"related"}],"termid":"GO:0035299","terms_by_termid":{"GO:0035299":null}}


id: MONDO:0009984
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A retinitis pigmentosa that is characterized by onset of symptoms in the fifth or sixth decade of life.","definition_xrefs":["DOID:0110421","PMID:1424244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"late-adult onset retinitis pigmentosa","secondary_identifiers":["ICD10CM:H35.5","MESH:C564840","GARD:15230","OMIM:268025","MEDGEN:340316","UMLS:C1849400"],"synonyms":[{"name":"retinitis pigmentosa, 'Senile'","type":"related"},{"name":"retinitis pigmentosa, late-ADULT onset","type":"related"},{"name":"senile retinitis pigmentosa","type":"exact"}],"termid":"MONDO:0009984","xrefs":{"Monarch":{"xref_id":"0009984"}}}


id: PBO:0054297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1688","termid":"PBO:0054297"}


id: PBO:0055223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2649","termid":"PBO:0055223"}


id: PR:O74521
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC663.15c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74521"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C663.15c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC663.15c","synonyms":[{"name":"Spom972h-SPCC663.15c","type":"exact"}],"termid":"PR:O74521"}


id: PBO:0004084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO","termid":"PBO:0004084"}


id: PBO:0052094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KBTBD11 overlapping transcript 1","termid":"PBO:0052094"}


id: PBO:0001155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat protein, implicated in meiosis","termid":"PBO:0001155"}


id: PBO:0081006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 43","termid":"PBO:0081006"}


id: PBO:0045370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthamide biosynthesis 5","termid":"PBO:0045370"}


id: PBO:0080236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitelline membrane outer layer 1 homolog","termid":"PBO:0080236"}


id: PBO:0062623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily G member 2","termid":"PBO:0062623"}


id: PBO:0044118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTAGE family member 3, pseudogene","termid":"PBO:0044118"}


id: PBO:0082447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bZIP transcriptional activator of amino acid biosynthetic genes;  activator responds to amino acid starvation; expression is tightly regulated at both the transcriptional and translational levels; contains four upstream open reading frames (uORFs) in 5' untranslated region which regulate translation","termid":"PBO:0082447"}


id: GO:0032462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein homooligomerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein oligomerization","termid":"GO:0032459"},{"relation_name":"regulates","term_name":"protein homooligomerization","termid":"GO:0051260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"regulation of protein homooligomerization","termid":"GO:0032462"}


id: PBO:0046498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERH pseudogene 1","termid":"PBO:0046498"}


id: MOD:00186
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes an L-tyrosine residue with 3',3'',5'-triiodo-L-thyronine.","definition_xrefs":["RESID:AA0177","Unimod:397","ChEBI:18258","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triiodinated residue","termid":"MOD:00502"},{"relation_name":"is_a","term_name":"iodinated tyrosine","termid":"MOD:00998"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3',3'',5'-triiodo-L-thyronine","synonyms":[{"name":"(S)-2-amino-3-[4-(4-hydroxy-3-iodophenoxy)-3,5-diiodophenyl]propanoic acid","type":"exact"},{"name":"3',3'',5'-triiodo-L-thyronine","type":"exact"},{"name":"3,3',5-triiodo-L-thyronine","type":"exact"},{"name":"3,5,3'-Triiodothyronine (from Tyrosine)","type":"exact"},{"name":"3,5,3'-triiodo-L-thyronine","type":"exact"},{"name":"4-(4-hydroxy-3-iodophenoxy)-3,5-diiodo-L-phenylalanine","type":"exact"},{"name":"I3Thy","type":"exact"},{"name":"MOD_RES Triiodothyronine","type":"exact"},{"name":"O-(4-hydroxy-3-iodophenyl)-3,5-diiodo-L-tyrosine","type":"exact"},{"name":"T3","type":"exact"},{"name":"Triiodothyronine","type":"related"},{"name":"liothyronine","type":"exact"},{"name":"triiodo","type":"related"}],"termid":"MOD:00186"}


id: GO:0047530
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4-diaminopentanoate + H2O + NAD(P)+ = 2-amino-4-oxopentanoate + NH3 + NAD(P)H + H+.","definition_xrefs":["EC:1.4.1.12","MetaCyc:24-DIAMINOPENTANOATE-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor","termid":"GO:0016639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"2,4-diaminopentanoate dehydrogenase activity","synonyms":[{"name":"2,4-diaminopentanoate:NAD(P)+ oxidoreductase (deaminating)","type":"related"},{"name":"2,4-diaminopentanoic acid C4 dehydrogenase activity","type":"related"}],"termid":"GO:0047530"}


id: PBO:0003185
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.6.1.2","termid":"PBO:0003185"}


id: MONDO:1012087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"alpha fucosidosis, non-human animal","termid":"MONDO:1011783"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha fucosidosis, dog","secondary_identifiers":["OMIA:000396-9615"],"termid":"MONDO:1012087","xrefs":{"Monarch":{"xref_id":"1012087"}}}


id: GO:0061341
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via effectors other than beta-catenin and contributing to the progression of the heart over time.","definition_xrefs":["GOC:mtg_heart","GOC:dph","PMID:16860783"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Wnt signaling pathway involved in heart development","termid":"GO:0003306"},{"relation_name":"is_a","term_name":"non-canonical Wnt signaling pathway","termid":"GO:0035567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"non-canonical Wnt signaling pathway involved in heart development","synonyms":[{"name":"non-canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"non-canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"non-canonical Wnt-activated signaling pathway involved in heart development","type":"exact"}],"termid":"GO:0061341"}


id: PBO:0085566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein disulfide isomerase of the endoplasmic reticulum lumen; EUG1 has a paralog, PDI1, that arose from the whole genome duplication; function overlaps with that of Pdi1p; may interact with nascent polypeptides in the ER","termid":"PBO:0085566"}


id: PBO:0079686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin family domain containing 1","termid":"PBO:0079686"}


id: PBO:0068364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 146","termid":"PBO:0068364"}


id: MONDO:0020404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital cardiovascular abnormality characterized by the presence of subvalvar left ventricular outflow tract obstruction, coarctation of the aorta, and mitral stenosis.","definition_xrefs":["NCIT:C99058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"congenital mitral valve insufficiency and/or stenosis","termid":"MONDO:0019817"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shone complex","secondary_identifiers":["MEDGEN:501135","SCTID:41371000119100","MedDRA:10066802","UMLS:C1868705","GARD:19630","Orphanet:99063","ICD9:746.84"],"synonyms":[{"name":"shone syndrome","type":"exact"},{"name":"shone's syndrome (greater than 3 sites)","type":"exact"}],"termid":"MONDO:0020404","xrefs":{"Monarch":{"xref_id":"0020404"}}}


id: MONDO:0000544
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A melanoma that arises from a mucosal site.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-cutaneous melanoma","termid":"MONDO:0006320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucosal melanoma","secondary_identifiers":["UMLS:C3898222","MEDGEN:857816","DOID:0050929","NCIT:C114828"],"synonyms":[{"name":"mucosal melanoma","type":"exact"}],"termid":"MONDO:0000544","xrefs":{"Monarch":{"xref_id":"0000544"}}}


id: PBO:0074710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 74B","termid":"PBO:0074710"}


id: PBO:0068206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 513","termid":"PBO:0068206"}


id: MONDO:0012729
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial polycythemia in which the cause of the disease is a mutation in the EPAS1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial polycythemia","termid":"MONDO:0001115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"erythrocytosis, familial, 4","secondary_identifiers":["MESH:C567086","OMIM:611783","DOID:0080339","GARD:18356","UMLS:C2673187","MEDGEN:435867"],"synonyms":[{"name":"ECYT4","type":"related"},{"name":"EPAS1 familial polycythemia","type":"exact"},{"name":"erythrocytosis, familial, 4","type":"exact"},{"name":"erythrocytosis, familial, type 4","type":"exact"},{"name":"familial polycythemia caused by mutation in EPAS1","type":"exact"}],"termid":"MONDO:0012729","xrefs":{"Monarch":{"xref_id":"0012729"}}}


id: PBO:0052554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"killer cell lectin like receptor F1","termid":"PBO:0052554"}


id: PBO:0043371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clustered mitochondria homolog pseudogene 1","termid":"PBO:0043371"}


id: GO:0050486
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a hydroxyl group from one position to another within a single molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"intramolecular hydroxytransferase activity","secondary_identifiers":["EC:5.4.4.-"],"synonyms":[{"name":"intramolecular transferase activity, transferring hydroxy groups","type":"exact"}],"termid":"GO:0050486"}


id: PBO:0046745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EXOC3 antisense RNA 1","termid":"PBO:0046745"}


id: PBO:0052769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 61","termid":"PBO:0052769"}


id: GO:0044546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the NLRP3 inflammasome complex, occurring at the level of an individual cell.","definition_xrefs":["GOC:jl","PMID:21048113"],"direct_ancestors":[{"relation_name":"is_a","term_name":"canonical inflammasome complex assembly","termid":"GO:0140632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"NLRP3 inflammasome complex assembly","synonyms":[{"name":"NALP3 inflammasome complex assembly","type":"exact"},{"name":"NLRP3 inflammasome activation","type":"related"}],"termid":"GO:0044546"}


id: PBO:0077454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM183A pseudogene 4","termid":"PBO:0077454"}


id: GO:0070658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Differentiation of new neuromast sensory hair cells to replace those lost or destroyed by injury.","definition_xrefs":["GOC:dsf","PMID:19381250"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromast hair cell differentiation","termid":"GO:0048886"},{"relation_name":"is_a","term_name":"mechanoreceptor differentiation involved in mechanosensory epithelium regeneration","termid":"GO:0070656"},{"relation_name":"part_of","term_name":"neuromast regeneration","termid":"GO:0070657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuromast hair cell differentiation involved in neuromast regeneration","termid":"GO:0070658"}


id: GO:0033203
data:
  {"annotated_genes":["SJAG_03495"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[117618],"is_not":false,"summary":null,"term":"GO:0033203"}]},"cv_name":"cellular_component","definition":"A homohexameric protein complex that possesses DNA helicase activity; associates with DNA polymerase alpha-primase and translocates in the 5' to 3' direction.","definition_xrefs":["PMID:9341218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA helicase complex","termid":"GO:0033202"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"DNA helicase A complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0033203","terms_by_termid":{"GO:0033203":null}}


id: PBO:0085297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pheromone-regulated protein; predicted to have one transmembrane segment; promoter contains Gcn4p binding elements; in W303 strain one continuous open reading frame comprising of YDL037C, the intergenic region and YDL039C encodes the IMI1","termid":"PBO:0085297"}


id: GO:0005555
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete blood group antigen (obsolete GO:0005555)","synonyms":[{"name":"blood group antigen","type":"exact"}],"termid":"GO:0005555"}


id: PBO:0082639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of glutamine amidotransferase (GATase II); forms a complex with Dug3p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p)","termid":"PBO:0082639"}


id: PBO:0065530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patched domain containing 3 pseudogene 2","termid":"PBO:0065530"}


id: GO:0001317
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Accumulation of proteins that have undergone reactions with reactive oxygen species in aging dividing cells and exhibit modifications such as increased protein carbonyl content, oxidized methionine, protein hydrophobicity, and cross-linking.","definition_xrefs":["GOC:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete accumulation of oxidatively modified proteins involved in replicative cell aging (obsolete GO:0001317)","synonyms":[{"name":"accumulation of oxidatively modified proteins during replicative cell ageing","type":"related"},{"name":"accumulation of oxidatively modified proteins during replicative cell aging","type":"related"}],"termid":"GO:0001317"}


id: MONDO:0007324
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete chorea (obsolete MONDO:0007324)","termid":"MONDO:0007324","xrefs":{"Monarch":{"xref_id":"0007324"}}}


id: GO:0071801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of podosome assembly.","definition_xrefs":["GOC:sl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"is_a","term_name":"regulation of organelle assembly","termid":"GO:1902115"},{"relation_name":"regulates","term_name":"podosome assembly","termid":"GO:0071800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"regulation of podosome assembly","termid":"GO:0071801"}


id: GO:0043924
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to suramin, a naphthalenesulfonic acid compound which is used in the treatment of diseases caused by trypanosomes and worms.","definition_xrefs":["GOC:jl","Wikipedia:Suramin"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide binding","termid":"GO:0033218"},{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"organic acid binding","termid":"GO:0043177"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"sulfur compound binding","termid":"GO:1901681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"suramin binding","synonyms":[{"name":"Germanin binding","type":"exact"}],"termid":"GO:0043924"}


id: PBO:0065124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase D2","termid":"PBO:0065124"}


id: PBO:0082249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha subunit of the mitochondrial processing protease (MPP); essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins","termid":"PBO:0082249"}


id: GO:1903850
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cristae formation.","definition_xrefs":["PMID:19279012","GOC:TermGenie","GOC:PARL","GO_REF:0000058","GOC:pad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitochondrion organization","termid":"GO:0010821"},{"relation_name":"regulates","term_name":"cristae formation","termid":"GO:0042407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0007005"],"is_obsolete":false,"name":"regulation of cristae formation","termid":"GO:1903850"}


id: GO:1990304
data:
  {"annotated_genes":["SJAG_00910"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[108214],"is_not":false,"summary":null,"term":"GO:1990304"}]},"cv_name":"cellular_component","definition":"A ubiquitin ligase complex consisting of MUB1, RAD6 and UBR2 components. It ubiquitinates, and targets for destruction, the RPN4 transcription factor, which upregulates the proteasome genes. The binding of MUB1 may position the RPN4 ubiquitylation site proximal to the Ubiquitin-RAD6 thioester and allow the transfer of Ubiquitin from RAD6 to RPN4. One of its components, MUB1, is a short-lived protein ubiquitinated by the UBR2-RAD6 ubiquitin conjugating enzyme.","definition_xrefs":["PMID:18070918","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00910":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"MUB1-RAD6-UBR2 ubiquitin ligase complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990304","terms_by_termid":{"GO:1990304":null}}


id: GO:1902277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of pancreatic amylase secretion.","definition_xrefs":["GOC:jc","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein secretion","termid":"GO:0050709"},{"relation_name":"is_a","term_name":"regulation of pancreatic amylase secretion","termid":"GO:1902276"},{"relation_name":"negatively_regulates","term_name":"pancreatic amylase secretion","termid":"GO:0036395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of pancreatic amylase secretion","synonyms":[{"name":"down regulation of pancreatic amylase secretion","type":"exact"},{"name":"down-regulation of pancreatic amylase secretion","type":"exact"},{"name":"downregulation of pancreatic amylase secretion","type":"exact"},{"name":"inhibition of pancreatic amylase secretion","type":"narrow"}],"termid":"GO:1902277"}


id: PBO:0043938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CREB regulated transcription coactivator 2","termid":"PBO:0043938"}


id: FYPO:0000238
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell fails to resume growth after several days in G0 phase. The inviable cells show some features characteristic of apoptosis, including loss of DNA.","definition_xrefs":["PMID:19197239","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable cell","termid":"FYPO:0000049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable cell upon G0 to G1 transition","synonyms":[{"name":"abolished mitotic competence upon G0 to G1 transition","type":"related"},{"name":"die in G0 with an apoptotic-like phenotype","type":"related"},{"name":"inviable cell upon exit from cell quiescence","type":"exact"},{"name":"inviable cell upon exit from quiescence","type":"exact"},{"name":"lethal in cell upon G0 to G1 transition","type":"exact"}],"termid":"FYPO:0000238"}


id: MONDO:0002840
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An eosinophilic gastroenteritis that is characterized by inflammation of the stomach.","direct_ancestors":[{"relation_name":"is_a","term_name":"gastritis","termid":"MONDO:0004966"},{"relation_name":"is_a","term_name":"eosinophilic gastroenteritis","termid":"MONDO:0016129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"eosinophilic gastritis","secondary_identifiers":["DOID:4030","icd11.foundation:1944772274","ICD9:535.40","ICD9:535.7","MEDGEN:120598","ICD9:535.70","SCTID:66329006","UMLS:C0267154","NCIT:C27052"],"synonyms":[{"name":"eosinophilic gastritis","type":"exact"}],"termid":"MONDO:0002840","xrefs":{"Monarch":{"xref_id":"0002840"}}}


id: PBO:0047502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FER tyrosine kinase","termid":"PBO:0047502"}


id: PBO:0072575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonucleotide reductase M2 polypeptide pseudogene 3","termid":"PBO:0072575"}


id: MONDO:0002489
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A phyllodes tumor of the breast characterized by infiltrative margins and a sarcomatous stromal component. The sarcomatous stroma usually displays features of fibrosarcoma. Liposarcomatous, osteosarcomatous, or rhabdomyosarcomatous elements may also be present.","definition_xrefs":["NCIT:C4504"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast cancer","termid":"MONDO:0007254"},{"relation_name":"is_a","term_name":"breast phyllodes tumor","termid":"MONDO:0021047"},{"relation_name":"is_a","term_name":"malignant phyllodes tumor","termid":"MONDO:0037003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant breast phyllodes tumor","secondary_identifiers":["UMLS:C0346154","SCTID:254844000","EFO:0008545","MEDGEN:87543","DOID:3016","ONCOTREE:MPT"],"synonyms":[{"name":"breast malignant phyllodes tumor","type":"related"},{"name":"breast malignant phyllodes tumour","type":"related"},{"name":"breast phyllodes tumor, malignant","type":"exact"},{"name":"malignant breast phyllodes neoplasm","type":"exact"},{"name":"malignant breast phyllodes tumor","type":"exact"},{"name":"malignant cystosarcoma phyllodes","type":"related"},{"name":"malignant cystosarcoma phyllodes (morphologic abnormality)","type":"related"},{"name":"malignant cystosarcoma phyllodes of breast","type":"exact"},{"name":"malignant cystosarcoma phyllodes of the breast","type":"exact"},{"name":"malignant mammary phyllodes neoplasm","type":"exact"},{"name":"malignant mammary phyllodes tumor","type":"exact"},{"name":"malignant mammary phyllodes tumour","type":"exact"},{"name":"malignant phyllodes breast neoplasm","type":"exact"},{"name":"malignant phyllodes neoplasm","type":"broad"},{"name":"malignant phyllodes neoplasm of breast","type":"exact"},{"name":"malignant phyllodes neoplasm of the breast","type":"exact"},{"name":"malignant phyllodes tumor (morphologic abnormality)","type":"exact"},{"name":"malignant phyllodes tumor of breast","type":"exact"},{"name":"malignant phyllodes tumor of the breast","type":"exact"},{"name":"malignant phyllodes tumour","type":"related"},{"name":"malignant phyllodes tumour (morphologic abnormality)","type":"exact"},{"name":"malignant phyllodes tumour of breast","type":"exact"},{"name":"malignant phyllodes tumour of the breast","type":"exact"},{"name":"phyllodes breast neoplasm","type":"broad"},{"name":"phyllodes breast tumor","type":"broad"},{"name":"phyllodes breast tumour","type":"broad"},{"name":"phyllodes tumor, malignant (morphologic abnormality)","type":"broad"}],"termid":"MONDO:0002489","xrefs":{"Monarch":{"xref_id":"0002489"}}}


id: GO:0090297
data:
  {"annotated_genes":["SJAG_03957"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95250],"is_not":false,"summary":null,"term":"GO:0090297"}]},"cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of the process in which new strands of DNA are synthesized in the mitochondrion.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitochondrial DNA replication","termid":"GO:0090296"},{"relation_name":"is_a","term_name":"positive regulation of mitochondrial DNA metabolic process","termid":"GO:1901860"},{"relation_name":"is_a","term_name":"positive regulation of DNA-templated DNA replication","termid":"GO:2000105"},{"relation_name":"positively_regulates","term_name":"mitochondrial DNA replication","termid":"GO:0006264"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03957":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"positively_regulates","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006259","GO:0007005","GO:0006260","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mitochondrial DNA replication","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of mitochondrial DNA synthesis","type":"related"}],"termid":"GO:0090297","terms_by_termid":{"GO:0090297":null}}


id: MONDO:0011378
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete CFM1 (obsolete MONDO:0011378)","secondary_identifiers":["OMIM:603855"],"synonyms":[{"name":"CFM1","type":"exact"},{"name":"cystic fibrosis, modifier of, 1","type":"related"},{"name":"meconium ileus in cystic fibrosis, susceptibility to","type":"related"}],"termid":"MONDO:0011378","xrefs":{"Monarch":{"xref_id":"0011378"}}}


id: GO:1901113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving erythromycin.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00240"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macrolide metabolic process","termid":"GO:0033067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"erythromycin metabolic process","synonyms":[{"name":"erythromycin metabolism","type":"exact"}],"termid":"GO:1901113"}


id: PBO:0034432
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_duration_of_mitosis","termid":"PBO:0034432"}


id: FYPO:0003468
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which RNA splicing is normal (i.e. indistinguishable from wild type). All RNA splicing may be normal, or one splicing of or more specific RNA molecules may be specifically assayed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA metabolism phenotype","termid":"FYPO:0000294"},{"relation_name":"is_a","term_name":"nucleic acid metabolism phenotype during vegetative growth","termid":"FYPO:0001347"},{"relation_name":"is_a","term_name":"normal RNA processing","termid":"FYPO:0001980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000294","FYPO:0000002"],"is_obsolete":false,"name":"normal RNA splicing","synonyms":[{"name":"normal RNA splicing during mitotic cell cycle","type":"related"},{"name":"normal RNA splicing during vegetative growth","type":"exact"},{"name":"normal RNA splicing, via transesterification reactions with bulged adenosine as nucleophile","type":"exact"}],"termid":"FYPO:0003468"}


id: GO:0005131
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a growth hormone receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"},{"relation_name":"is_a","term_name":"hormone receptor binding","termid":"GO:0051427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"growth hormone receptor binding","synonyms":[{"name":"growth hormone","type":"narrow"},{"name":"growth hormone receptor ligand","type":"narrow"}],"termid":"GO:0005131"}


id: GO:0044681
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex of two polypeptides which form a dodecamer (A6B6). Catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde. This reaction is involved in coenzyme M biosynthesis.","definition_xrefs":["GOC:mengo_curators","PMID:10940029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"sulfopyruvate decarboxylase complex","termid":"GO:0044681"}


id: GO:1900491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of [4Fe-4S] cluster assembly.","definition_xrefs":["GOC:mengo_curators","GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of iron-sulfur cluster assembly","termid":"GO:1903329"},{"relation_name":"regulates","term_name":"[4Fe-4S] cluster assembly","termid":"GO:0044572"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0016226","GO:0044085"],"is_obsolete":false,"name":"regulation of [4Fe-4S] cluster assembly","synonyms":[{"name":"regulation of 4Fe-4S cluster assembly","type":"exact"},{"name":"regulation of [4Fe-4S] cluster biosynthetic process","type":"related"}],"termid":"GO:1900491"}


id: PBO:0042808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"competing endogenous lncRNA 2 for microRNA let-7b","termid":"PBO:0042808"}


id: MONDO:0011774
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the MYO3A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 30","secondary_identifiers":["OMIM:607101","DOID:0110489","MESH:C564624","UMLS:C1846784","MEDGEN:335521","GARD:22603"],"synonyms":[{"name":"DFNB30","type":"narrow"},{"name":"MYO3A autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"autosomal recessive deafness 30","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 30","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in MYO3A","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 30","type":"narrow"},{"name":"autosomal recessive nonsyndromic hearing loss 30","type":"exact"},{"name":"deafness, autosomal recessive 30","type":"narrow"},{"name":"deafness, autosomal recessive type 30","type":"narrow"}],"termid":"MONDO:0011774","xrefs":{"Monarch":{"xref_id":"0011774"}}}


id: GO:0006382
data:
  {"annotated_genes":["SJAG_04189","SJAG_00352","SJAG_04380"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103720,100603,103433],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002100"}]},"cv_name":"biological_process","definition":"The conversion of an adenosine residue to inosine in an RNA molecule by deamination.","definition_xrefs":["PMID:11092837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"base conversion or substitution editing","termid":"GO:0016553"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00352":null,"SJAG_04189":null,"SJAG_04380":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adenosine to inosine editing","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-75064"],"termid":"GO:0006382","terms_by_termid":{"GO:0002100":null}}


id: PBO:0069095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 342, pseudogene","termid":"PBO:0069095"}


id: GO:0032209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a recombinational process involved in the maintenance of proper telomeric length.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of telomere maintenance","termid":"GO:0032206"},{"relation_name":"is_a","term_name":"regulation of telomere maintenance via recombination","termid":"GO:0032207"},{"relation_name":"is_a","term_name":"positive regulation of mitotic recombination","termid":"GO:0045951"},{"relation_name":"is_a","term_name":"positive regulation of DNA recombination at telomere","termid":"GO:0072696"},{"relation_name":"positively_regulates","term_name":"telomere maintenance via recombination","termid":"GO:0000722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"positively_regulates","termid":"GO:0006310"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0032200"}],"interesting_parent_ids":["GO:0006310","GO:0032200","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"positive regulation of telomere maintenance via recombination","synonyms":[{"name":"activation of telomere maintenance via recombination","type":"narrow"},{"name":"stimulation of telomere maintenance via recombination","type":"narrow"},{"name":"up regulation of telomere maintenance via recombination","type":"exact"},{"name":"up-regulation of telomere maintenance via recombination","type":"exact"},{"name":"upregulation of telomere maintenance via recombination","type":"exact"}],"termid":"GO:0032209"}


id: PBO:0108592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 75A","termid":"PBO:0108592"}


id: GO:1902793
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of glutamate decarboxylase activity.","definition_xrefs":["PMID:17384644","GOC:TermGenie","GO_REF:0000088","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"glutamate decarboxylase complex","termid":"GO:1902793"}


id: SO:0002095
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A ncRNA, specific to the Cajal body, that has been demonstrated to function as a guide RNA in the site-specific synthesis of 2'-O-ribose-methylated nucleotides and pseudouridines in the RNA polymerase II-transcribed U1, U2, U4 and U5 spliceosomal small nuclear RNAs (snRNAs).","definition_xrefs":["PMID:27775477","SO:nrs","PMC:126017","PMID:28869095"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snoRNA","termid":"SO:0000275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scaRNA","secondary_identifiers":["http://www.ncbi.nlm.nih.gov/pmc/articles/PMC126017/"],"synonyms":[{"name":"small Cajal body specific RNA","type":"exact"},{"name":"small Cajal body-specific RNA","type":"exact"}],"termid":"SO:0002095"}


id: MONDO:0020619
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood group, langereis system (obsolete MONDO:0020619)","secondary_identifiers":["OMIM:111600"],"synonyms":[{"name":"BLOOD GROUP, LANGEREIS SYSTEM","type":"related"},{"name":"LAN","type":"related"},{"name":"blood group, Langereis system","type":"exact"}],"termid":"MONDO:0020619","xrefs":{"Monarch":{"xref_id":"0020619"}}}


id: GO:0019940
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete SUMO-dependent protein catabolic process (obsolete GO:0019940)","synonyms":[{"name":"SUMO-dependent protein breakdown","type":"exact"},{"name":"SUMO-dependent protein catabolic process","type":"exact"},{"name":"SUMO-dependent protein catabolism","type":"exact"},{"name":"SUMO-dependent protein degradation","type":"exact"}],"termid":"GO:0019940"}


id: PBO:0108960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"source_file","termid":"PBO:0108960"}


id: PBO:0002848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitocondrial FUN14 family protein","termid":"PBO:0002848"}


id: MONDO:1012190
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neurogenic muscular atrophy, non-human animal","termid":"MONDO:1011852"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurogenic muscular atrophy, dog","secondary_identifiers":["OMIA:000719-9615"],"termid":"MONDO:1012190","xrefs":{"Monarch":{"xref_id":"1012190"}}}


id: PBO:0042345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD81 antisense RNA 1","termid":"PBO:0042345"}


id: GO:2000743
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of anterior head development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of anterior head development","termid":"GO:2000742"},{"relation_name":"negatively_regulates","term_name":"anterior head development","termid":"GO:0097065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of anterior head development","termid":"GO:2000743"}


id: MONDO:0013948
data:
  {"annotated_genes":["SJAG_04763"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86764],"is_not":false,"summary":null,"term":"MONDO:0013948"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"peroxisome biogenesis disorder","termid":"MONDO:0019234"},{"relation_name":"is_a","term_name":"peroxisome biogenesis disorder due to PEX3 defect","termid":"MONDO:0100261"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04763":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0019053"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0019053","MONDO:0005066","MONDO:0005559","MONDO:0005244","MONDO:0006025"],"is_obsolete":false,"name":"peroxisome biogenesis disorder 10A (Zellweger)","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:766913","GARD:15873","UMLS:C3553999","OMIM:614882","DOID:0080484"],"synonyms":[{"name":"PBD10A","type":"related"},{"name":"peroxisome biogenesis disorder 10A (Zellweger)","type":"exact"},{"name":"peroxisome biogenesis disorder, complementation group 12","type":"related"},{"name":"peroxisome biogenesis disorder, complementation group G","type":"related"}],"termid":"MONDO:0013948","terms_by_termid":{"MONDO:0013948":null},"xrefs":{"Monarch":{"xref_id":"0013948"}}}


id: MONDO:0004873
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemorrhoid which originates above the dentate line.","definition_xrefs":["NCIT:C35319"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemorrhoid","termid":"MONDO:0004872"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"internal hemorrhoid","secondary_identifiers":["SCTID:90458007","MEDGEN:75549","UMLS:C0265034","ICD9:455.2","ICD9:455.6","DOID:9749"],"synonyms":[{"name":"internal hemorrhoid","type":"exact"}],"termid":"MONDO:0004873","xrefs":{"Monarch":{"xref_id":"0004873"}}}


id: MONDO:0007491
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystelephalangy","secondary_identifiers":["OMIM:128000","UMLS:C1851955","MEDGEN:343690","MESH:C538000"],"synonyms":[{"name":"Kirner deformity","type":"related"},{"name":"congenital bilateral metadiaphyseal acrodysplasia of the little finger","type":"related"},{"name":"dystelephalangy","type":"exact"}],"termid":"MONDO:0007491","xrefs":{"Monarch":{"xref_id":"0007491"}}}


id: PBO:0062675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 14 subfamily C member 36","termid":"PBO:0062675"}


id: PBO:0088313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial [2Fe-2S] cluster assembly and tRNA modification cysteine desulfurase Nfs1","termid":"PBO:0088313"}


id: MONDO:0014760
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"},{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"TFRC-related combined immunodeficiency","secondary_identifiers":["MEDGEN:1799556","OMIM:616740","GARD:17849","Orphanet:476113","UMLS:C5568133","DOID:0111948"],"synonyms":[{"name":"CID due to TFRC deficiency","type":"exact"},{"name":"IMD46","type":"exact"},{"name":"combined immunodeficiency due to TFRC deficiency","type":"related"},{"name":"immunodeficiency 46","type":"exact"},{"name":"immunodeficiency type 46","type":"exact"}],"termid":"MONDO:0014760","xrefs":{"Monarch":{"xref_id":"0014760"}}}


id: PBO:0077999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor associated factor 3","termid":"PBO:0077999"}


id: GO:0036008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sucrose, which proceeds by phosphorylation of sucrose to form sucrose-6-phosphate. The subsequent actions of a hydrolase and a fructokinase generate fructose-6-phosphate and glucose-6-phosphate.","definition_xrefs":["MetaCyc:SUCUTIL-PWY","GOC:bf","GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sucrose catabolic process","termid":"GO:0005987"},{"relation_name":"is_a","term_name":"fructose 6-phosphate metabolic process","termid":"GO:0006002"},{"relation_name":"is_a","term_name":"glucose 6-phosphate metabolic process","termid":"GO:0051156"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"sucrose catabolic process to fructose-6-phosphate and glucose-6-phosphate","termid":"GO:0036008"}


id: PBO:0063018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAXIP1 associated glutamate rich protein 1","termid":"PBO:0063018"}


id: PBO:0067152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 202, pseudogene","termid":"PBO:0067152"}


id: PR:O94724
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1393.12 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1393.12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1393.12","synonyms":[{"name":"Spom972h-SPCC1393.12","type":"exact"}],"termid":"PR:O94724"}


id: MONDO:0011018
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An exceedingly rare form of brachyolmia, characterized by mild platyspondyly, broad ilia, elongated femoral necks with coxa valga, scoliosis, and short trunked short stature associated with amelogenesis imperfecta of both primary and permanent dentition.","definition_xrefs":["Orphanet:2899"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"brachyolmia-amelogenesis imperfecta syndrome","secondary_identifiers":["MEDGEN:318659","UMLS:C1832594","DOID:0090143","OMIM:601216","SCTID:716195006","GARD:5478"],"synonyms":[{"name":"DASS","type":"exact"},{"name":"STHAG6","type":"exact"},{"name":"Verloes Bourguignon syndrome","type":"related"},{"name":"Verloes-Bourguignon syndrome","type":"exact"},{"name":"amelogenesis imperfecta and platyspondyly","type":"related"},{"name":"dental anomalies and short stature","type":"exact"},{"name":"platyspondyly with amelogenesis imperfecta","type":"exact"},{"name":"platyspondyly-amelogenesis imperfecta syndrome","type":"exact"},{"name":"selective tooth agenesis 5","type":"exact"},{"name":"skeletal dysplasia with amelogenesis imperfecta and platyspondyly","type":"related"},{"name":"tooth agenesis, selective, 6","type":"exact"},{"name":"tooth agenesis, selective, 6, formerly","type":"related"}],"termid":"MONDO:0011018","xrefs":{"Monarch":{"xref_id":"0011018"}}}


id: PBO:0046454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPS8 like 2","termid":"PBO:0046454"}


id: GO:0061645
data:
  {"annotated_genes":["SJAG_00677","SJAG_03011","SJAG_03145","SJAG_00970","SJAG_00907","SJAG_01748","SJAG_02700","SJAG_00521","SJAG_03581","SJAG_03119","SJAG_03146","SJAG_04887","SJAG_00700","SJAG_04001","SJAG_03044","SJAG_02511","SJAG_01384","SJAG_04724","SJAG_01964","SJAG_03465","SJAG_04461","SJAG_03455","SJAG_01993","SJAG_02177","SJAG_00920","SJAG_03375","SJAG_01894","SJAG_03086","SJAG_03088","SJAG_04479","SJAG_02282","SJAG_00152","SJAG_04982","SJAG_02075","SJAG_02566","SJAG_01114","SJAG_01268","SJAG_02245","SJAG_03025","SJAG_04052","SJAG_04644","SJAG_04886","SJAG_02228","SJAG_04517","SJAG_00185","SJAG_01732","SJAG_03380","SJAG_00649","SJAG_03596","SJAG_04100","SJAG_02202","SJAG_04465"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[94080,98817,102732],"is_not":false,"summary":null,"term":"GO:0061645"},{"annotations":[93151,106498,111608,101997,111116,92082,110468,93319,102226,111311,99175,97413,99354,100409,102727,100440,94393,98391,102544,117926,97216,107460,111634,110134,112347,115610,92039,94780,98812,108511,90383,87660,90182,101205,106351,98331,102789,106313,104817,113756,87766,101235,114321,89331,108196,105486,118288,104625,94296,104607,106623],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030479"}]},"cv_name":"cellular_component","definition":"The part of the cell cortex consisting of an aggregation of proteins that will give rise to an endocytic vesicle.","definition_xrefs":["PMID:22949647","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cell cortex","termid":"GO:0005938"}],"gene_count":52,"genes_by_uniquename":{"SJAG_00152":null,"SJAG_00185":null,"SJAG_00521":null,"SJAG_00649":null,"SJAG_00677":null,"SJAG_00700":null,"SJAG_00907":null,"SJAG_00920":null,"SJAG_00970":null,"SJAG_01114":null,"SJAG_01268":null,"SJAG_01384":null,"SJAG_01732":null,"SJAG_01748":null,"SJAG_01894":null,"SJAG_01964":null,"SJAG_01993":null,"SJAG_02075":null,"SJAG_02177":null,"SJAG_02202":null,"SJAG_02228":null,"SJAG_02245":null,"SJAG_02282":null,"SJAG_02511":null,"SJAG_02566":null,"SJAG_02700":null,"SJAG_03011":null,"SJAG_03025":null,"SJAG_03044":null,"SJAG_03086":null,"SJAG_03088":null,"SJAG_03119":null,"SJAG_03145":null,"SJAG_03146":null,"SJAG_03375":null,"SJAG_03380":null,"SJAG_03455":null,"SJAG_03465":null,"SJAG_03581":null,"SJAG_03596":null,"SJAG_04001":null,"SJAG_04052":null,"SJAG_04100":null,"SJAG_04461":null,"SJAG_04465":null,"SJAG_04479":null,"SJAG_04517":null,"SJAG_04644":null,"SJAG_04724":null,"SJAG_04886":null,"SJAG_04887":null,"SJAG_04982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005938","GO:0005575"],"is_obsolete":false,"name":"endocytic patch","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061645","terms_by_termid":{"GO:0030479":null,"GO:0061645":null}}


id: PBO:0060682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDRG family member 2","termid":"PBO:0060682"}


id: MONDO:0958104
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Alport syndrome","termid":"MONDO:0018965"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"digenic Alport syndrome","secondary_identifiers":["Orphanet:653722"],"termid":"MONDO:0958104","xrefs":{"Monarch":{"xref_id":"0958104"}}}


id: PBO:0053903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1193","termid":"PBO:0053903"}


id: PBO:0068446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 20, pseudogene","termid":"PBO:0068446"}


id: MONDO:0006218
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplastic, non-invasive lesion that affects the gallbladder epithelium. It is characterized by the presence of atypical epithelial cells with an increased nuclear/cytoplasmic ratio, nuclear hyperchromasia, and loss of nuclear polarity.","definition_xrefs":["NCIT:C43606"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gallbladder neoplasm","termid":"MONDO:0021253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"gallbladder biliary intraepithelial neoplasia","secondary_identifiers":["EFO:1000265","UMLS:C1708174","MEDGEN:317714"],"synonyms":[{"name":"gallbladder BilIN","type":"exact"},{"name":"gallbladder biliary intraepithelial neoplasia","type":"exact"},{"name":"gallbladder dysplasia","type":"exact"},{"name":"gallbladder intraepithelial neoplasia","type":"exact"},{"name":"intracystic BilIN","type":"exact"},{"name":"intracystic biliary intraepithelial neoplasia","type":"exact"}],"termid":"MONDO:0006218","xrefs":{"Monarch":{"xref_id":"0006218"}}}


id: FYPO:0005104
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of Lys63-specific deubiquitinase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal ubiquitinyl hydrolase activity","termid":"FYPO:0003111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000652","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"abnormal Lys63-specific deubiquitinase activity","termid":"FYPO:0005104"}


id: GO:0036518
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a dopaminergic neuron growth cone is directed to a specific target site in response to a repulsive chemical cue.","definition_xrefs":["GOC:PARL","PMID:21106844","GOC:bf","PMID:23517308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemorepulsion of axon","termid":"GO:0061643"},{"relation_name":"part_of","term_name":"dopaminergic neuron axon guidance","termid":"GO:0036514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chemorepulsion of dopaminergic neuron axon","synonyms":[{"name":"chemorepulsion of DA axon","type":"exact"},{"name":"chemorepulsion of dopaminergic axon","type":"related"}],"termid":"GO:0036518"}


id: GO:0033065
data:
  {"annotated_genes":["SJAG_00757","SJAG_02708"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[92177,96415],"is_not":false,"summary":null,"term":"GO:0033065"}]},"cv_name":"cellular_component","definition":"A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51C and XRCC3, or orthologs thereof.","definition_xrefs":["GOC:mah","GOC:vw","PMID:17114795","PMID:16093548","PMID:12427746"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA recombinase mediator complex","termid":"GO:0033061"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00757":null,"SJAG_02708":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"Rad51C-XRCC3 complex","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0033062"],"synonyms":[{"name":"CX3 complex","type":"exact"},{"name":"Rad55-Rad57 complex","type":"exact"},{"name":"Rhp55-Rhp57 complex","type":"related"}],"termid":"GO:0033065","terms_by_termid":{"GO:0033065":null}}


id: GO:0042837
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D-glucarate, the D-enantiomer of glucarate.","definition_xrefs":["GOC:jsg","GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate biosynthetic process","termid":"GO:0016051"},{"relation_name":"is_a","term_name":"glucarate biosynthetic process","termid":"GO:0019393"},{"relation_name":"is_a","term_name":"D-glucarate metabolic process","termid":"GO:0042836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"D-glucarate biosynthetic process","synonyms":[{"name":"D-glucarate anabolism","type":"exact"},{"name":"D-glucarate biosynthesis","type":"exact"},{"name":"D-glucarate formation","type":"exact"},{"name":"D-glucarate synthesis","type":"exact"},{"name":"saccharate biosynthesis","type":"exact"},{"name":"saccharate biosynthetic process","type":"exact"}],"termid":"GO:0042837"}


id: SO:0001264
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A noncoding RNA that guides the insertion or deletion of uridine residues in mitochondrial mRNAs. This may also refer to synthetic RNAs used to guide DNA editing using the CRIPSR/Cas9 system.","direct_ancestors":[{"relation_name":"has_quality","term_name":"gRNA_encoding","termid":"SO:0000979"},{"relation_name":"is_a","term_name":"ncRNA_gene","termid":"SO:0001263"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gRNA_gene","synonyms":[{"name":"gRNA gene","type":"exact"}],"termid":"SO:0001264"}


id: RO:HOM0000055
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Paralogy that is characterized by duplication of adjacent sequences on a chromosome segment.","definition_xrefs":["ISBN:978-0878932665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in_paralogy_relationship_with","termid":"RO:HOM0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_tandem_paralogy_relationship_with","synonyms":[{"name":"iterative paralogy","type":"related"},{"name":"serial paralogy","type":"related"},{"name":"tandem paralogous to","type":"exact"}],"termid":"RO:HOM0000055"}


id: FYPO:0003715
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to Skb1-containing lateral cortical nodes is abolished, and the protein is instead detected distributed throughout the plasma membrane and/or cell cortex.","definition_xrefs":["PMID:25009287","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to lateral cortical node","termid":"FYPO:0003713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to lateral cortical node, with protein distributed in plasma membrane or cortex","synonyms":[{"name":"abolished protein localisation to lateral cortical node, with protein distributed in plasma membrane or cortex","type":"exact"},{"name":"abolished protein localization to lateral cortical node, with protein distributed in cell cortex","type":"narrow"},{"name":"abolished protein localization to lateral cortical node, with protein distributed in plasma membrane","type":"narrow"},{"name":"abolished protein localization to lateral cortical node, with protein distributed in plasma membrane or cortex, during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to lateral cortical node, with protein distributed in plasma membrane or cortex, during vegetative growth","type":"exact"},{"name":"protein localization to lateral cortical node abolished, with protein distributed in plasma membrane or cortex","type":"exact"}],"termid":"FYPO:0003715"}


id: PBO:0064069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 103","termid":"PBO:0064069"}


id: GO:0008838
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-diaminopropionate + H2O = pyruvate + 2 NH3.","definition_xrefs":["EC:4.3.1.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia-lyase activity","termid":"GO:0016841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"diaminopropionate ammonia-lyase activity","secondary_identifiers":["MetaCyc:4.3.1.15-RXN"],"synonyms":[{"name":"2,3-diaminopropionate ammonia-lyase (adding H2O; pyruvate-forming)","type":"related"},{"name":"2,3-diaminopropionate ammonia-lyase activity","type":"related"},{"name":"alpha,beta-diaminopropionate ammonia-lyase activity","type":"related"},{"name":"diaminopropionatase activity","type":"related"}],"termid":"GO:0008838"}


id: PBO:0081536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 445","termid":"PBO:0081536"}


id: MONDO:0005763
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with viruses of the family flaviviridae.","definition_xrefs":["MESH:D018178"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary viral infectious disease","termid":"MONDO:0100329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Flaviviridae infectious disease","secondary_identifiers":["EFO:0007274","SCTID:111865007"],"synonyms":[{"name":"Flaviviridae caused disease or disorder","type":"exact"},{"name":"Flaviviridae disease or disorder","type":"exact"}],"termid":"MONDO:0005763","xrefs":{"Monarch":{"xref_id":"0005763"}}}


id: MONDO:0014752
data:
  {"annotated_genes":["SJAG_04148"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85432],"is_not":false,"summary":null,"term":"MONDO:0014752"}]},"cv_name":"mondo","definition":"Any familial nephrotic syndrome in which the cause of the disease is a mutation in the NUP107 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial idiopathic steroid-resistant nephrotic syndrome","termid":"MONDO:0019006"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04148":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrotic syndrome, type 11","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:616730","DOID:0080385","GARD:16155","MEDGEN:898622","UMLS:C4225228"],"synonyms":[{"name":"NPHS11","type":"exact"},{"name":"NUP107 familial nephrotic syndrome","type":"exact"},{"name":"Nup107 familial nephrotic syndrome","type":"exact"},{"name":"familial nephrotic syndrome caused by mutation in NUP107","type":"exact"},{"name":"familial nephrotic syndrome caused by mutation in Nup107","type":"exact"},{"name":"nephrotic syndrome, type 11","type":"exact"},{"name":"nephrotic syndrome, type 11; NPHS11","type":"exact"}],"termid":"MONDO:0014752","terms_by_termid":{"MONDO:0014752":null},"xrefs":{"Monarch":{"xref_id":"0014752"}}}


id: PBO:0038280
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"first_approved_timestamp","termid":"PBO:0038280"}


id: PBO:0003046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexose transporter Ght4","termid":"PBO:0003046"}


id: FYPO:0007754
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which phase II of mitotic spindle assembly does not occur. During phase II, the spindle is normally maintained at a constant length during mitotic metaphase.","definition_xrefs":["PomBase:mah","PMID:32723864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished mitotic spindle assembly","termid":"FYPO:0001683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0000641","FYPO:0000337","FYPO:0000054","FYPO:0001985"],"is_obsolete":false,"name":"abolished mitotic spindle formation phase II","synonyms":[{"name":"abnormal mitotic spindle formation, without spindle phase II","type":"exact"},{"name":"abolished mitotic spindle assembly phase II","type":"exact"},{"name":"abolished mitotic spindle formation (spindle phase two)","type":"exact"}],"termid":"FYPO:0007754"}


id: PBO:0040036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo like helical domain containing 3","termid":"PBO:0040036"}


id: GO:0021534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cells, resulting in the expansion of a cell population in the hindbrain.","definition_xrefs":["GOC:cls","GOC:dgh","GOC:dph","GO_REF:0000021","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural precursor cell proliferation","termid":"GO:0061351"},{"relation_name":"part_of","term_name":"hindbrain development","termid":"GO:0030902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell proliferation in hindbrain","termid":"GO:0021534"}


id: PBO:0055906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 30","termid":"PBO:0055906"}


id: PBO:0071673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37 pseudogene 5","termid":"PBO:0071673"}


id: PBO:0058879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 10396a","termid":"PBO:0058879"}


id: GO:0015015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification, often by sulfation, of sugars incorporated into heparan sulfate after polymerization.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heparan sulfate proteoglycan metabolic process","termid":"GO:0030201"},{"relation_name":"part_of","term_name":"heparan sulfate proteoglycan biosynthetic process","termid":"GO:0015012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"heparan sulfate proteoglycan biosynthetic process, enzymatic modification","synonyms":[{"name":"heparan sulfate proteoglycan anabolism, enzymatic modification","type":"exact"},{"name":"heparan sulfate proteoglycan formation, enzymatic modification","type":"exact"},{"name":"heparan sulfate proteoglycan synthesis, enzymatic modification","type":"exact"},{"name":"heparan sulphate proteoglycan biosynthesis, enzymatic modification","type":"exact"},{"name":"heparan sulphate proteoglycan biosynthetic process, enzymatic modification","type":"exact"},{"name":"heparin proteoglycan biosynthetic process, enzymatic modification","type":"related"}],"termid":"GO:0015015"}


id: PBO:0051551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 9 receptor pseudogene 1","termid":"PBO:0051551"}


id: PR:Q9C1W9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- adl1 gene.","definition_xrefs":["UniProtKB:Q9C1W9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA ligase 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC713.06","synonyms":[{"name":"DNA ligase III (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-adl1","type":"exact"},{"name":"polydeoxyribonucleotide synthase [ATP] 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9C1W9"}


id: MONDO:0005777
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition resulting from infection by Klebsiella granulomati, which is characterized by ulcerative lesions of the genitalia.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"bacterial sexually transmitted disease","termid":"MONDO:0005323"},{"relation_name":"is_a","term_name":"Klebsiella infectious disease","termid":"MONDO:0030603"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"granuloma inguinale","secondary_identifiers":["UMLS:C0018190","MEDGEN:42291","ICD10CM:A58","ICD9:099.2","DOID:9113","icd11.foundation:764124124","MESH:D006100","NCIT:C3065","SCTID:28867007","EFO:0007291"],"synonyms":[{"name":"donovanosis","type":"exact"},{"name":"granuloma inguinale","type":"exact"},{"name":"pudendal ulcer","type":"exact"}],"termid":"MONDO:0005777","xrefs":{"Monarch":{"xref_id":"0005777"}}}


id: MONDO:0013906
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any amelogenesis imperfecta in which the cause of the disease is a mutation in the ODAPH gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amelogenesis imperfecta type 2","termid":"MONDO:0015048"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenesis imperfecta hypomaturation type 2A4","secondary_identifiers":["UMLS:C3553830","GARD:15847","DOID:0110062","MEDGEN:766744","OMIM:614832"],"synonyms":[{"name":"AI2A4","type":"exact"},{"name":"ODAPH amelogenesis imperfecta","type":"exact"},{"name":"amelogenesis imperfecta caused by mutation in ODAPH","type":"exact"},{"name":"amelogenesis imperfecta hypomaturation type IIA4","type":"exact"},{"name":"amelogenesis imperfecta type IIA4","type":"exact"},{"name":"amelogenesis imperfecta, hypomaturation type, IIA4","type":"related"},{"name":"amelogenesis imperfecta, type IIA4","type":"exact"}],"termid":"MONDO:0013906","xrefs":{"Monarch":{"xref_id":"0013906"}}}


id: GO:0055052
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex for the transport of metabolites into the cell, consisting of 5 subunits: two ATP-binding subunits, two membrane spanning subunits, and one substrate-binding subunit. In organisms with two membranes, the substrate-binding protein moves freely in the periplasmic space and joins the other subunits only when bound with substrate. In organisms with only one membrane the substrate-binding protein is tethered to the cytoplasmic membrane and associated with the other subunits. Transport of the substrate across the membrane is driven by the hydrolysis of ATP.","definition_xrefs":["GOC:mlg","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-binding cassette (ABC) transporter complex","termid":"GO:0043190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing","termid":"GO:0055052"}


id: _global:is_bearer_of
data:
  {"annotation_feature_type":"gene","cv_name":"fypo_extension_relations","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_bearer_of","secondary_identifiers":["BFO:0000053"],"synonyms":[{"name":"has_color","type":"narrow"}],"termid":"_global:is_bearer_of"}


id: PBO:0016887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endocytic docking protein Mso1","termid":"PBO:0016887"}


id: GO:0042598
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete vesicular fraction (obsolete GO:0042598)","synonyms":[{"name":"vesicular fraction","type":"exact"}],"termid":"GO:0042598"}


id: PBO:0059481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"moesin pseudogene 1","termid":"PBO:0059481"}


id: GO:0002087
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process carried out by the nervous system that is required for the proper control of respiratory gaseous exchange. This process occurs in the respiratory center of the brain in vertebrates.","definition_xrefs":["GOC:tb","PMID:12458206","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of respiratory system process","termid":"GO:0044065"},{"relation_name":"is_a","term_name":"nervous system process","termid":"GO:0050877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of respiratory gaseous exchange by nervous system process","synonyms":[{"name":"neurological control of breathing","type":"exact"},{"name":"regulation of respiratory gaseous exchange by neurological system process","type":"exact"}],"termid":"GO:0002087"}


id: PBO:0113742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRSS3 pseudogene 5","termid":"PBO:0113742"}


id: PBO:0110369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPS8 signaling adaptor L3","termid":"PBO:0110369"}


id: MONDO:0006969
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sialadenitis is an infection of the salivary glands. It is usually caused by a virus or bacteria. The parotid (in front ofthe ear) and submandibular (under the chin) glands are most commonly affected. Sialadenitis may be associated with pain, tenderness, redness, and gradual, localized swelling of the affected area. Sialadenitis most commonly affects the elderly and chronically ill especially those with dry mouth or who are dehydrated, but can also affected people of any age including newborn babies. Diagnosis is usually made by clinical exam but a CT scan, MRI scan or ultrasound may be done if the doctor suspects an abscess or to look for stones. Treatment may include an antibiotic (if bacterial), warm compresses, increasing fluid intake and good oral hygiene. Most salivary gland infections go away on their own or are cured with treatment. Complications are not common.","direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland disorder","termid":"MONDO:0001142"},{"relation_name":"is_a","term_name":"lymphadenitis","termid":"MONDO:0002052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"sialadenitis","secondary_identifiers":["NCIT:C26882","MedDRA:10040627","MEDGEN:48657","NCIT:C115165","ICD9:527.2","DOID:10303","MESH:D012793","SCTID:42982001","UMLS:C0037023","EFO:1001179"],"synonyms":[{"name":"adenitis, salivary gland","type":"related"},{"name":"lymphadenitis (disease) of saliva-secreting gland","type":"exact"},{"name":"saliva-secreting gland lymphadenitis (disease)","type":"exact"},{"name":"salivary gland inflammation","type":"related"},{"name":"sialitis","type":"exact"},{"name":"sialoadenitis","type":"exact"}],"termid":"MONDO:0006969","xrefs":{"Monarch":{"xref_id":"0006969"}}}


id: FYPO:0003766
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial DNA molecules are interlinked by unresolved recombination junctions.","definition_xrefs":["PomBase:mah","PMID:10954073"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome morphology during vegetative growth","termid":"FYPO:0000848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0001985","FYPO:0000652","FYPO:0001320","FYPO:0000641","FYPO:0005447","FYPO:0000002","FYPO:0000661"],"is_obsolete":false,"name":"aggregated mtDNA","synonyms":[{"name":"aggregated mitochondrial DNA","type":"exact"},{"name":"aggregated mitochondrial chromosomes","type":"exact"},{"name":"aggregated mtDNA during mitotic cell cycle","type":"related"},{"name":"aggregated mtDNA during vegetative growth","type":"exact"},{"name":"fused mitochondrial chromosomes","type":"related"},{"name":"fused mtDNA","type":"related"},{"name":"interlinked mtDNA","type":"exact"}],"termid":"FYPO:0003766"}


id: PBO:0070186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 104 pseudogene","termid":"PBO:0070186"}


id: GO:0010973
data:
  {"annotated_genes":["SJAG_01114","SJAG_03342","SJAG_05290","SJAG_04468","SJAG_03704","SJAG_00514","SJAG_03936","SJAG_00082","SJAG_01805","SJAG_03048","SJAG_04776","SJAG_04666","SJAG_03631","SJAG_01188"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104650,88753,89380,114914,112804,91927,106513,105852,93305,117331],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140281"},{"annotations":[93309,109976,89512,101875,87054],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031031"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of division septum formation. division septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis.","definition_xrefs":["PMID:22786806","GOC:mtg_cell_cycle","PMID:19959363","PMID:21246752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of division septum assembly","termid":"GO:0032955"},{"relation_name":"is_a","term_name":"positive regulation of cell septum assembly","termid":"GO:1901893"},{"relation_name":"positively_regulates","term_name":"division septum assembly","termid":"GO:0000917"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00514":null,"SJAG_01114":null,"SJAG_01188":null,"SJAG_01805":null,"SJAG_03048":null,"SJAG_03342":null,"SJAG_03631":null,"SJAG_03704":null,"SJAG_03936":null,"SJAG_04468":null,"SJAG_04666":null,"SJAG_04776":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of division septum assembly","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1901912","GO:1902470"],"synonyms":[{"name":"positive regulation of division septum formation","type":"exact"},{"name":"positive regulation of division septum formation involved in cell cycle cytokinesis","type":"exact"},{"name":"upregulation of mitotic division septum assembly","type":"exact"}],"termid":"GO:0010973","terms_by_termid":{"GO:0031031":null,"GO:0140281":null}}


id: GO:0000020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of genetic recombination within the DNA of the genes coding for ribosomal RNA.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of recombination within rDNA repeats (obsolete GO:0000020)","synonyms":[{"name":"negative regulation of recombination within rDNA repeats","type":"exact"}],"termid":"GO:0000020"}


id: MONDO:0003577
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cribriform carcinoma (obsolete MONDO:0003577)","termid":"MONDO:0003577","xrefs":{"Monarch":{"xref_id":"0003577"}}}


id: GO:2000729
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mesenchymal cell proliferation involved in ureter development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mesenchymal cell proliferation","termid":"GO:0002053"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of mesenchymal cell proliferation involved in ureter development","termid":"GO:0072199"},{"relation_name":"positively_regulates","term_name":"mesenchymal cell proliferation involved in ureter development","termid":"GO:0072198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mesenchymal cell proliferation involved in ureter development","synonyms":[{"name":"positive regulation of ureter mesenchymal cell proliferation","type":"related"},{"name":"positive regulation of ureteral mesenchymal cell proliferation","type":"related"}],"termid":"GO:2000729"}


id: PBO:0067478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 610, pseudogene","termid":"PBO:0067478"}


id: PR:O94423
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fizzy-related protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02359","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic fizzy-related protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1198.12","secondary_identifiers":["UniProtKB:O94423"],"synonyms":[{"name":"Spom972h-FZR1","type":"exact"}],"termid":"PR:O94423"}


id: PR:Q9P6J6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A periplasmic beta-glucosidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02337"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-glucosidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1683.04","secondary_identifiers":["UniProtKB:Q9P6J6"],"synonyms":[{"name":"Cellobiase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Gentiobiase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-bglX","type":"exact"},{"name":"beta-D-glucoside glucohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6J6"}


id: PBO:0058024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3974","termid":"PBO:0058024"}


id: PBO:0017690
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"optic neuropathy with encephalopathy and cerebellar atrophy","termid":"PBO:0017690"}


id: PBO:0081773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 705A","termid":"PBO:0081773"}


id: PBO:0003788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clathrin light chain","termid":"PBO:0003788"}


id: MONDO:0014917
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the CACNA1A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"undetermined early-onset epileptic encephalopathy","termid":"MONDO:0018614"},{"relation_name":"is_a","term_name":"CACNA1A-related complex neurodevelopmental disorder","termid":"MONDO:0100254"},{"relation_name":"is_a","term_name":"neonatal-onset developmental and epileptic encephalopathy","termid":"MONDO:0100455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005027","MONDO:0700092","MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 42","secondary_identifiers":["OMIM:617106","MEDGEN:934683","DOID:0080454","UMLS:C4310716","GARD:16191"],"synonyms":[{"name":"CACNA1A early infantile epileptic encephalopathy","type":"exact"},{"name":"DEE42","type":"exact"},{"name":"EIEE42","type":"exact"},{"name":"developmental and epileptic encephalopathy 42","type":"exact"},{"name":"early infantile epileptic encephalopathy caused by mutation in CACNA1A","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 42","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 42; EIEE42","type":"exact"},{"name":"epileptic encephalopathy, early infantile, type 42","type":"exact"}],"termid":"MONDO:0014917","xrefs":{"Monarch":{"xref_id":"0014917"}}}


id: PBO:0028534
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mislocalized,_misoriented_septum","termid":"PBO:0028534"}


id: PBO:0054681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2089","termid":"PBO:0054681"}


id: PBO:0024852
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. cerevisiae ERO1","termid":"PBO:0024852"}


id: GO:0015160
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of beta-glucans from one side of a membrane to the other. Beta-glucans are compounds composed of glucose residues linked by beta-glucosidic bonds.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide transmembrane transporter activity","termid":"GO:0015159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"beta-glucan transmembrane transporter activity","termid":"GO:0015160"}


id: GO:0070989
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of removing one or more methyl groups from a molecule, involving the oxidation (i.e. electron loss) of one or more atoms in the substrate.","definition_xrefs":["GOC:mah","GOC:rl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"demethylation","termid":"GO:0070988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oxidative demethylation","termid":"GO:0070989"}


id: SO:0000829
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome originating in a nucleomorph.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"nucleomorphic_sequence","termid":"SO:0000739"},{"relation_name":"is_a","term_name":"chromosome","termid":"SO:0000340"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleomorphic_chromosome","synonyms":[{"name":"nucleomorphic chromosome","type":"exact"}],"termid":"SO:0000829"}


id: GO:0075088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the host organism activates, maintains or increases the frequency, rate or extent of the symbiont G protein-coupled receptor signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by host of symbiont G protein-coupled receptor signal transduction (obsolete GO:0075088)","synonyms":[{"name":"positive regulation by host of symbiont G-protein coupled receptor protein signal transduction","type":"exact"}],"termid":"GO:0075088"}


id: PBO:0050475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox A3","termid":"PBO:0050475"}


id: FYPO:0006693
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 4 of histone H3 occurs to a lower extent than normal during G0 phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during G0","termid":"FYPO:0003871"},{"relation_name":"is_a","term_name":"abnormal histone methylation","termid":"FYPO:0006870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0000641","FYPO:0005447","FYPO:0002494","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H3-K4 dimethylation during G0","synonyms":[{"name":"decreased histone H3 K4 dimethylation during G0","type":"exact"},{"name":"decreased histone H3-K4 dimethylation during cell quiescence","type":"exact"},{"name":"decreased histone H3-K4 dimethylation during quiescence","type":"exact"},{"name":"decreased histone H3K4 dimethylation during G0","type":"exact"},{"name":"decreased histone H3K4me2 during G0","type":"exact"},{"name":"decreased histone lysine H3 K4 dimethylation during G0","type":"exact"},{"name":"reduced histone H3-K4 dimethylation during G0","type":"exact"}],"termid":"FYPO:0006693"}


id: _global:edited_to
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"edited_to","termid":"_global:edited_to"}


id: MONDO:0958110
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skin vascular disease","termid":"MONDO:0019293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"atrophic papulosis","secondary_identifiers":["Orphanet:656071"],"termid":"MONDO:0958110","xrefs":{"Monarch":{"xref_id":"0958110"}}}


id: GO:0072492
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the inner and outer lipid bilayers of the host cell mitochondrial envelope.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"},{"relation_name":"part_of","term_name":"host cell mitochondrial envelope","termid":"GO:0044190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell mitochondrial intermembrane space","termid":"GO:0072492"}


id: MONDO:0001812
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"blepharitis","termid":"MONDO:0004785"},{"relation_name":"is_a","term_name":"parasitic eye infection","termid":"MONDO:0020947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"parasitic eyelid infestation","secondary_identifiers":["MEDGEN:509836","DOID:13823","ICD9:373.6","SCTID:193922006","UMLS:C0155183"],"synonyms":[{"name":"parasitic eyelid infestation","type":"exact"},{"name":"parasitic infestation of eyelid","type":"exact"}],"termid":"MONDO:0001812","xrefs":{"Monarch":{"xref_id":"0001812"}}}


id: GO:0042860
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving achromobactin, a citrate siderophore.","definition_xrefs":["GOC:jl","PMID:10928541"],"direct_ancestors":[{"relation_name":"is_a","term_name":"siderophore metabolic process","termid":"GO:0009237"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"achromobactin metabolic process","synonyms":[{"name":"achromobactin metabolism","type":"exact"}],"termid":"GO:0042860"}


id: PBO:0085527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S27, no bacterial homolog; RPS27A has a paralog, RPS27B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress","termid":"PBO:0085527"}


id: GO:0002667
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of T cell anergy.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell tolerance induction","termid":"GO:0002664"},{"relation_name":"is_a","term_name":"regulation of lymphocyte anergy","termid":"GO:0002911"},{"relation_name":"regulates","term_name":"T cell anergy","termid":"GO:0002870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T cell anergy","synonyms":[{"name":"regulation of T lymphocyte anergy","type":"exact"},{"name":"regulation of T-cell anergy","type":"exact"},{"name":"regulation of T-lymphocyte anergy","type":"exact"}],"termid":"GO:0002667"}


id: MONDO:0009533
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dahlberg-Borer-Newcomer syndrome is a very rare ectodermal dysplasia syndrome, described in 2 adult brothers, characterized by the association of hypoparathyroidism, nephropathy, congenital lymphedema, mitral valve prolapse and brachytelephalangy. Additional features include mild facial dysmorphism, hyperthricoses, and nail abnormalities.","definition_xrefs":["Orphanet:1563"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"},{"relation_name":"is_a","term_name":"lymphatic malformation","termid":"MONDO:0019313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005046"],"is_obsolete":false,"name":"Dahlberg-Borer-Newcomer syndrome","secondary_identifiers":["MESH:C535769","SCTID:721083007","MEDGEN:383693","OMIM:247410","GARD:237","UMLS:C1855477","icd11.foundation:1407652122"],"synonyms":[{"name":"Dahlberg Borer Newcomer syndrome","type":"related"},{"name":"Dahlberg syndrome","type":"exact"},{"name":"hypoparathyroidism lymphedema syndrome","type":"related"},{"name":"hypoparathyroidism-lymphedema syndrome","type":"related"},{"name":"lymphedema hypoparathyroidism syndrome","type":"related"},{"name":"lymphedema-hypoparathyroidism syndrome","type":"exact"}],"termid":"MONDO:0009533","xrefs":{"Monarch":{"xref_id":"0009533"}}}


id: PBO:0042878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 161","termid":"PBO:0042878"}


id: SO:0001159
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence element characteristic of some RNA polymerase II promoters, usually located between -50 and -10 relative to the TSS. Consensus sequence is KTYRGTATWTTT. Tends to co-occur with DMv4 (SO:0001157) . Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162).","definition_xrefs":["PMID:12537576:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMv5_motif","synonyms":[{"name":"DMv5","type":"exact"},{"name":"DMv5 motif","type":"exact"},{"name":"KTYRGTATWTTT","type":"narrow"},{"name":"directional motif v5","type":"exact"},{"name":"promoter motif 6","type":"related"}],"termid":"SO:0001159"}


id: GO:0061345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via effectors other than beta-catenin and contributing to a cardioblast being committed to a cardiac muscle cell fate.","definition_xrefs":["GOC:dph","GOC:mtg_heart","PMID:16860783"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Wnt signaling pathway, planar cell polarity pathway","termid":"GO:0060071"},{"relation_name":"is_a","term_name":"non-canonical Wnt signaling pathway involved in heart development","termid":"GO:0061341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"planar cell polarity pathway involved in cardiac muscle cell fate commitment","termid":"GO:0061345"}


id: PBO:0031547
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_septation","termid":"PBO:0031547"}


id: MONDO:0023238
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hamartoma","termid":"MONDO:0006499"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"giant mammary hamartoma","secondary_identifiers":["UMLS:C2931343","MEDGEN:419055","MESH:C536818"],"synonyms":[{"name":"giant hamartoma of the breast","type":"related"}],"termid":"MONDO:0023238","xrefs":{"Monarch":{"xref_id":"0023238"}}}


id: PBO:0039336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha kinase 3","termid":"PBO:0039336"}


id: PBO:0029554
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_ethyl_methanesulfonate","termid":"PBO:0029554"}


id: PBO:0064434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PNP pseudogene 1","termid":"PBO:0064434"}


id: GO:0033250
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: a penicillin + H2O = a substituted beta-amino acid derivative of the penicillin.","definition_xrefs":["GOC:mlg"],"gene_count":0,"genotype_count":0,"name":"obsolete penicillinase activity (obsolete GO:0033250)","termid":"GO:0033250"}


id: GO:0035313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of an epidermal cell along or through a wound gap that contributes to the reestablishment of a continuous epidermis.","definition_xrefs":["PMID:15269788","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"wound healing, spreading of cells","termid":"GO:0044319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"wound healing, spreading of epidermal cells","termid":"GO:0035313"}


id: PBO:0056052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LUC7 like 2, pre-mRNA splicing factor","termid":"PBO:0056052"}


id: GO:0035616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A histone deubiquitination process in which a ubiquitin monomer is removed from a conserved lysine residue in the C-terminus of histone H2B. The conserved lysine residue is K119 in fission yeast, K123 in budding yeast, or K120 in mammals.","definition_xrefs":["PMID:15657442","GOC:vw","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2B conserved C-terminal lysine deubiquitination (obsolete GO:0035616)","synonyms":[{"name":"budding yeast H2B K123 deubiquitination","type":"narrow"},{"name":"fission yeast H2B K119 deubiquitination","type":"narrow"},{"name":"mammalian H2B K120 deubiquitination","type":"narrow"}],"termid":"GO:0035616"}


id: SO:0002270
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"RTE retrotransposons are LINE elements (SO:0000194) that contain a domain with homology to the apurinic-apyrimidic (AP) endonucleases in addition to the previously identified reverse transcriptase domain.","definition_xrefs":["PMID:9729877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"LINE_element","termid":"SO:0000194"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RTE_LINE_retrotransposon","synonyms":[{"name":"RIT retrotransposon","type":"exact"},{"name":"RTE LINE retrotransposon","type":"exact"},{"name":"RTE retrotransposon","type":"exact"}],"termid":"SO:0002270"}


id: PR:O42654
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC10F6.15 gene.","definition_xrefs":["UniProtKB:O42654","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 134 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC10F6.15","synonyms":[{"name":"Spom972h-SPAC10F6.15","type":"exact"}],"termid":"PR:O42654"}


id: PBO:0035985
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_neddylation_during_vegetative_growth","termid":"PBO:0035985"}


id: PBO:0053882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1162","termid":"PBO:0053882"}


id: MONDO:0016168
data:
  {"annotated_genes":["SJAG_00321"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86175],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013766"}]},"cv_name":"mondo","definition":"Cryopyrin associated periodic syndrome (CAPS) defines a group of autoinflammatory diseases, characterized by recurrent episodes of systemic inflammatory attacks in the absence of infection or autoimmune disease. CAPS comprises 3 disorders on a continuum of severity: severe CINCA syndrome, intermediate Muckle-Wells syndrome (MWS) and milder familial cold urticaria (FCAS).","definition_xrefs":["Orphanet:208650"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"},{"relation_name":"is_a","term_name":"hereditary periodic fever syndrome","termid":"MONDO:0017953"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00321":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"cryopyrin-associated periodic syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:10927","NANDO:1200465","SCTID:430079001","icd11.foundation:2139918612","MedDRA:10068850","MEDGEN:412215","ICD9:759.89","MESH:D056587","NANDO:2200432","NCIT:C84657","UMLS:C2316212"],"synonyms":[{"name":"Cryopyrinopathy","type":"exact"},{"name":"caps","type":"broad"}],"termid":"MONDO:0016168","terms_by_termid":{"MONDO:0013766":null},"xrefs":{"Monarch":{"xref_id":"0016168"}}}


id: MONDO:1011170
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteochondrosis that occurs in chicken.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"osteochondrosis, non-human animal","termid":"MONDO:1010299"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteochondrosis, chicken","secondary_identifiers":["OMIA:000750-9031"],"termid":"MONDO:1011170","xrefs":{"Monarch":{"xref_id":"1011170"}}}


id: FYPO:0003923
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of DNA strand elongation involved in mitotic nuclear DNA replication is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased rate of DNA replication","termid":"FYPO:0001981"},{"relation_name":"is_a","term_name":"abnormal mitotic DNA replication elongation","termid":"FYPO:0006730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0000293","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased rate of mitotic DNA replication elongation","synonyms":[{"name":"decreased rate of DNA replication elongation during mitotic cell cycle","type":"related"},{"name":"decreased rate of DNA strand elongation involved in mitotic DNA replication","type":"exact"},{"name":"decreased rate of DNA strand elongation involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"decreased rate of mitotic DNA replication elongation during vegetative growth","type":"exact"},{"name":"reduced rate of mitotic DNA replication elongation","type":"exact"}],"termid":"FYPO:0003923"}


id: PBO:0113437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Squalene epoxidase; catalyzes epoxidation of squalene to 2,3-oxidosqualene; plays essential role in ergosterol-biosynthesis pathway and is specific target of antifungal drug terbinafine; directed to ER via guided entry of tail-anchored proteins (GET) pathway; degradation by ERAD triggered by membrane lipid saturation; human SQLE functionally complements the lethality of the erg1 null mutation","termid":"PBO:0113437"}


id: MONDO:1010082
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Evans syndrome that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune thrombocytopenia, non-human animal","termid":"MONDO:1010069"},{"relation_name":"is_a","term_name":"syndromic disease, non-human animal","termid":"MONDO:1011360"},{"relation_name":"is_a","term_name":"autoimmune hemolytic anemia, non-human animal","termid":"MONDO:1011406"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Evans syndrome, non-human animal","secondary_identifiers":["OMIA:001286"],"termid":"MONDO:1010082","xrefs":{"Monarch":{"xref_id":"1010082"}}}


id: PBO:0049219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor kinase 3","termid":"PBO:0049219"}


id: PBO:0040025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat containing X-linked 1","termid":"PBO:0040025"}


id: PBO:0078979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon GCT) 5-1","termid":"PBO:0078979"}


id: PBO:0082427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bisphosphate-3'-nucleotidase; involved in salt tolerance and methionine biogenesis; dephosphorylates 3'-phosphoadenosine-5'-phosphate and 3'-phosphoadenosine-5'-phosphosulfate, intermediates of the sulfate assimilation pathway; human homolog BPNT1 complements yeast null mutant","termid":"PBO:0082427"}


id: GO:0030246
data:
  {"annotated_genes":["SJAG_03824","SJAG_00667","SJAG_04495","SJAG_03280","SJAG_03818","SJAG_00981","SJAG_04571","SJAG_00839","SJAG_02951","SJAG_00530","SJAG_01991","SJAG_01858","SJAG_02839","SJAG_03535","SJAG_02131","SJAG_04334"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[86897,87144,87145,92456,93051,95615,95616,101092,101093,113164,113165],"is_not":false,"summary":null,"term":"GO:0030246"},{"annotations":[95207],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030248"},{"annotations":[97499,94037],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005536"},{"annotations":[113777,113206,110200,117953],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005537"},{"annotations":[117956],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001065"},{"annotations":[103130],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048029"},{"annotations":[99644],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030247"}]},"cv_name":"molecular_function","definition":"Binding to a carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00530":null,"SJAG_00667":null,"SJAG_00839":null,"SJAG_00981":null,"SJAG_01858":null,"SJAG_01991":null,"SJAG_02131":null,"SJAG_02839":null,"SJAG_02951":null,"SJAG_03280":null,"SJAG_03535":null,"SJAG_03818":null,"SJAG_03824":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_04571":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"carbohydrate binding","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0005529"],"synonyms":[{"name":"selectin","type":"related"},{"name":"sugar binding","type":"exact"}],"termid":"GO:0030246","terms_by_termid":{"GO:0005536":null,"GO:0005537":null,"GO:0030246":null,"GO:0030247":null,"GO:0030248":null,"GO:0048029":null,"GO:2001065":null}}


id: PBO:0042636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain protein Y-linked 11 pseudogene","termid":"PBO:0042636"}


id: PBO:0036382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin Pfl3, DIPSY family","termid":"PBO:0036382"}


id: PBO:0089069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex histone demethylase subunit Msc1","termid":"PBO:0089069"}


id: GO:0034827
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1,2-dihydroxy-5,6,7,8-tetrahydronaphthalene + O2 = 4-(2-oxocyclohexyl)-2-hydroxy-buta-2,4-dienoate + H+.","definition_xrefs":["UM-BBD_reactionID:r1171"],"gene_count":0,"genotype_count":0,"name":"obsolete 1,2-dihydroxy-5,6,7,8-tetrahydronaphthalene extradiol dioxygenase activity (obsolete GO:0034827)","termid":"GO:0034827"}


id: PBO:0080489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 8","termid":"PBO:0080489"}


id: PBO:0044510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytokine like 1","termid":"PBO:0044510"}


id: GO:0044720
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces the size of an imaginal disc-derived wing.","definition_xrefs":["PMID:21393605"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of imaginal disc-derived wing size","termid":"GO:0044719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of imaginal disc-derived wing size","termid":"GO:0044720"}


id: PBO:0042875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 141","termid":"PBO:0042875"}


id: MONDO:0007562
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multiple epiphyseal dysplasia, Beighton type is a skeletal dysplasia characterized by epiphyseal dysplasia (usually mild) associated with progressive myopia, retinal thinning, crenated cataracts, conductive deafness, and stubby digits.","definition_xrefs":["Orphanet:166011"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple epiphyseal dysplasia","termid":"MONDO:0016648"},{"relation_name":"is_a","term_name":"type 2 collagenopathy","termid":"MONDO:0022800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"multiple epiphyseal dysplasia, Beighton type","secondary_identifiers":["OMIM:132450","SCTID:719689005","DOID:0111348","UMLS:C1851536","MEDGEN:377049","icd11.foundation:1115252418","ICD10CM:Q77.3","GARD:17012","MESH:C565046"],"synonyms":[{"name":"EDMMD","type":"related"},{"name":"epiphyseal dysplasia, multiple, with myopia and conductive deafness","type":"related"},{"name":"epiphyseal dysplasia, multiple, with myopia and deafness","type":"exact"},{"name":"multiple epiphyseal dysplasia-myopia-deafness syndrome","type":"exact"}],"termid":"MONDO:0007562","xrefs":{"Monarch":{"xref_id":"0007562"}}}


id: PBO:0042123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 196","termid":"PBO:0042123"}


id: GO:0051974
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops or reduces the activity of the enzyme telomerase, which catalyzes of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of telomerase activity (obsolete GO:0051974)","synonyms":[{"name":"down regulation of telomerase activity","type":"exact"},{"name":"down-regulation of telomerase activity","type":"exact"},{"name":"downregulation of telomerase activity","type":"exact"},{"name":"inhibition of telomerase activity","type":"narrow"},{"name":"telomerase inhibitor","type":"related"}],"termid":"GO:0051974"}


id: GO:0103103
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose + 9-methylthiononylhydroximate = 8-methylthiooctyldesulfoglucosinolate + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete UDP-glucose: 9-methylthiononylhydroximate S-glucosyltransferase activity (obsolete GO:0103103)","termid":"GO:0103103"}


id: PBO:0017973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRR1 family protein involved in microtubule-based process Ber1 (predicted)","termid":"PBO:0017973"}


id: PBO:0060807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDUFV1 divergent transcript","termid":"PBO:0060807"}


id: GO:1904269
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The cell cortex of the leading edge of a cell.","definition_xrefs":["PMID:25843030","GO_REF:0000064","GOC:kmv","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cortex region","termid":"GO:0099738"},{"relation_name":"part_of","term_name":"cell leading edge","termid":"GO:0031252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005938"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005938","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"cell leading edge cell cortex","synonyms":[{"name":"cell cortex of cell leading edge","type":"exact"},{"name":"cell cortex of front of cell","type":"exact"},{"name":"cell cortex of leading edge of cell","type":"exact"},{"name":"cell periphery of cell leading edge","type":"related"},{"name":"cell periphery of front of cell","type":"related"},{"name":"cell periphery of leading edge of cell","type":"related"},{"name":"peripheral cytoplasm of cell leading edge","type":"related"},{"name":"peripheral cytoplasm of front of cell","type":"related"},{"name":"peripheral cytoplasm of leading edge of cell","type":"related"}],"termid":"GO:1904269"}


id: GO:0070118
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer membrane of any thylakoid within an organellar chromatophore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thylakoid membrane","termid":"GO:0042651"},{"relation_name":"is_a","term_name":"organellar chromatophore membrane","termid":"GO:0070112"},{"relation_name":"part_of","term_name":"organellar chromatophore thylakoid","termid":"GO:0070116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"organellar chromatophore thylakoid membrane","synonyms":[{"name":"Paulinella-type chromatophore thylakoid membrane","type":"exact"}],"termid":"GO:0070118"}


id: GO:0051992
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: di-trans,octa-cis-undecaprenyl phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine = di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UMP.","definition_xrefs":["RHEA:28386"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016780"}],"interesting_parent_ids":["GO:0016780","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity","secondary_identifiers":["MetaCyc:PHOSNACMURPENTATRANS-RXN"],"termid":"GO:0051992"}


id: GO:0008370
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. These are terms that have been removed from the active component ontology.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular component (obsolete GO:0008370)","termid":"GO:0008370"}


id: MOD:01022
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to 2-piperidinecarboxylic acid.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclized residue","termid":"MOD:00601"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"},{"relation_name":"is_a","term_name":"deaminated residue","termid":"MOD:01160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-piperidinecarboxylic acid","synonyms":[{"name":"Pip","type":"exact"}],"termid":"MOD:01022"}


id: GO:0008022
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a protein C-terminus, the end of a peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete protein C-terminus binding (obsolete GO:0008022)","synonyms":[{"name":"C-terminal binding","type":"exact"},{"name":"C-terminal end binding","type":"exact"},{"name":"COOH-terminal binding","type":"narrow"},{"name":"COOH-terminus binding","type":"narrow"},{"name":"carboxy-terminal binding","type":"related"},{"name":"carboxy-terminus binding","type":"related"},{"name":"carboxyl-terminal binding","type":"related"},{"name":"carboxyl-terminus binding","type":"related"},{"name":"carboxylate-terminal binding","type":"related"},{"name":"carboxylate-terminus binding","type":"narrow"}],"termid":"GO:0008022"}


id: GO:0120134
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the axoneme that is close to the base of the cilium.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axoneme","termid":"GO:0005930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"proximal portion of axoneme","synonyms":[{"name":"proximal part of axoneme","type":"exact"}],"termid":"GO:0120134"}


id: MONDO:0020841
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with cerebellar atrophy and with or without seizures","secondary_identifiers":["OMIM:618056","UMLS:C4748032","MEDGEN:1648373"],"synonyms":[{"name":"NEDCAS","type":"exact"},{"name":"neurodevelopmental disorder with cerebellar atrophy and with or without seizures","type":"exact"}],"termid":"MONDO:0020841","xrefs":{"Monarch":{"xref_id":"0020841"}}}


id: PBO:0016972
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved in schizosaccharomyces","termid":"PBO:0016972"}


id: GO:1904133
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of convergent extension involved in rhombomere morphogenesis.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:dph","PMID:24892953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of convergent extension involved in gastrulation","termid":"GO:1904103"},{"relation_name":"regulates","term_name":"convergent extension involved in rhombomere morphogenesis","termid":"GO:1904125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of convergent extension involved in rhombomere morphogenesis","termid":"GO:1904133"}


id: MONDO:0013282
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Alpha-1-antitrypsin deficiency is a hereditary disease that develops in adulthood and is characterized by chronic liver disorders (cirrhosis), respiratory disorders (emphysema), and rarely panniculitis.","definition_xrefs":["Orphanet:60"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"plasma protein metabolism disease","termid":"MONDO:0002273"},{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"alpha 1-antitrypsin deficiency","secondary_identifiers":["ICD9:273.4","icd11.foundation:824872160","NCIT:C84397","NANDO:2200611","DOID:13372","ICD10CM:E88.01","OMIM:613490","NANDO:2100174","UMLS:C0221757","NANDO:1200755","GARD:5784","MEDGEN:67461","MESH:D019896","NORD:754","SCTID:30188007","MedDRA:10001806"],"synonyms":[{"name":"A-1ATD","type":"exact"},{"name":"A1AD","type":"exact"},{"name":"A1AT deficiency","type":"related"},{"name":"A1ATD","type":"related"},{"name":"AAT deficiency","type":"exact"},{"name":"AATD","type":"related"},{"name":"ALPHA-1-antitrypsin deficiency","type":"related"},{"name":"Alpha 1 antitrypsin deficiency","type":"related"},{"name":"Alpha-1 Antitrypsin Deficiency","type":"exact"},{"name":"Alpha-1 antitrypsin deficiency","type":"related"},{"name":"alpha 1-antitrypsin deficiency","type":"exact"},{"name":"alpha-1-antitrypsin deficiency","type":"related"},{"name":"deficiency in Alpa-1-proteinase inhibitor","type":"exact"},{"name":"emphysema due to AAT deficiency","type":"exact"},{"name":"emphysema-cirrhosis, due to AAT deficiency","type":"exact"},{"name":"hemorrhagic diathesis due to antithrombin pittsburgh","type":"exact"}],"termid":"MONDO:0013282","xrefs":{"Monarch":{"xref_id":"0013282"}}}


id: GO:2000417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of eosinophil migration.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte migration","termid":"GO:0002686"},{"relation_name":"is_a","term_name":"regulation of eosinophil migration","termid":"GO:2000416"},{"relation_name":"negatively_regulates","term_name":"eosinophil migration","termid":"GO:0072677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of eosinophil migration","termid":"GO:2000417"}


id: GO:0071909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determination of the asymmetric location of the stomach with respect to the left and right halves of the organism.","definition_xrefs":["GOC:cvs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"determination of digestive tract left/right asymmetry","termid":"GO:0071907"},{"relation_name":"part_of","term_name":"stomach development","termid":"GO:0062094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of stomach left/right asymmetry","termid":"GO:0071909"}


id: FYECO:0000329
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which formamide was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ formamide","termid":"FYECO:0000329"}


id: FYPO:0004328
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cellular protein localization is normal (i.e. indistinguishable from wild type) during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0000138","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization during mitosis","synonyms":[{"name":"normal cellular protein localization during mitosis","type":"exact"},{"name":"normal protein localisation during mitosis during vegetative growth","type":"exact"},{"name":"normal protein localization during mitotic M phase","type":"related"},{"name":"normal protein localization during mitotic nuclear division","type":"exact"}],"termid":"FYPO:0004328"}


id: GO:0060594
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process in which the mammary line is specified. The mammary line is a ridge of epidermal cells that will form the mammary placodes.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of animal organ identity","termid":"GO:0010092"},{"relation_name":"is_a","term_name":"mammary gland formation","termid":"GO:0060592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammary gland specification","synonyms":[{"name":"mammary line specification","type":"related"}],"termid":"GO:0060594"}


id: MONDO:1011953
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spinal dysplasia, non-human animal","secondary_identifiers":["OMIA:000937"],"termid":"MONDO:1011953","xrefs":{"Monarch":{"xref_id":"1011953"}}}


id: MONDO:0006146
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hamartoma that is characterized by the presence of chondroid elements.","definition_xrefs":["NCIT:C42589"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"neoplasm","termid":"MONDO:0005070"},{"relation_name":"is_a","term_name":"hamartoma","termid":"MONDO:0006499"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroid hamartoma","secondary_identifiers":["MEDGEN:313028","UMLS:C1707390","EFO:1000175"],"termid":"MONDO:0006146","xrefs":{"Monarch":{"xref_id":"0006146"}}}


id: PBO:0034441
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_telomere-telomerase_complex_assembly","termid":"PBO:0034441"}


id: MONDO:0005807
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare immunodeficiency syndrome characterized by the decrease of the CD4-positive lymphocytes below 300 per cubic millimeter in the absence of identifiable immunodeficiency causes. Patients with this syndrome are at an increased risk of opportunistic infections.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T-cell immunodeficiency","termid":"MONDO:0003780"},{"relation_name":"is_a","term_name":"lymphopenia","termid":"MONDO:0003783"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"idiopathic CD4-positive T-lymphocytopenia","secondary_identifiers":["NCIT:C84780","DOID:3109","UMLS:C0206744","MESH:D018344","MEDGEN:64647"],"termid":"MONDO:0005807","xrefs":{"Monarch":{"xref_id":"0005807"}}}


id: GO:0050991
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transient sulfation of peptidyl-threonine to form O-sulfo-L-threonine.","definition_xrefs":["RESID:AA0362"],"gene_count":0,"genotype_count":0,"name":"obsolete enzyme active site formation via O-sulfo-L-threonine (obsolete GO:0050991)","termid":"GO:0050991"}


id: MONDO:0016598
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital secondary polycythemia","termid":"MONDO:0016540"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"autosomal recessive secondary polycythemia not associated with VHL gene","secondary_identifiers":["GARD:20658","Orphanet:247378"],"synonyms":[{"name":"autosomal recessive secondary erythrocytosis not associated with VHL gene","type":"exact"},{"name":"autosomal recessive secondary erythrocytosis, non-Chuvash type","type":"exact"},{"name":"autosomal recessive secondary polycythemia, non-Chuvash type","type":"exact"}],"termid":"MONDO:0016598","xrefs":{"Monarch":{"xref_id":"0016598"}}}


id: GO:0039632
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive movement along a single- or double-stranded RNA molecule, which contributes to the packaging of viral RNA into a nucleocapsid.","definition_xrefs":["PMID:22297533","GOC:bm"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA translocase activity involved in viral RNA genome packaging (obsolete GO:0039632)","synonyms":[{"name":"RNA packaging ATPase activity","type":"exact"},{"name":"viral RNA packaging activity","type":"related"}],"termid":"GO:0039632"}


id: PBO:0043872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP responsive element binding protein 3 like 1","termid":"PBO:0043872"}


id: PBO:0113379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels; targeted to vacuole via AP-3 pathway","termid":"PBO:0113379"}


id: MONDO:0024635
data:
  {"annotated_genes":["SJAG_03920","SJAG_00260"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86335,86336],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011719"}]},"cv_name":"mondo","definition":"A disease that involves the small intestine.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_03920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"small intestine disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:574283","SCTID:119522002","UMLS:C0341268"],"synonyms":[{"name":"disease of small intestine","type":"exact"},{"name":"disease or disorder of small intestine","type":"exact"},{"name":"disorder of small intestine","type":"exact"},{"name":"small intestine disease or disorder","type":"exact"}],"termid":"MONDO:0024635","terms_by_termid":{"MONDO:0011719":null},"xrefs":{"Monarch":{"xref_id":"0024635"}}}


id: GO:0043754
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-methylpropanoyl-CoA + enzyme N6-(dihydrolipoyl)lysine = CoA + enzyme N6-(S-[2-methylpropanoyl]dihydrolipoyl)lysine.","definition_xrefs":["RHEA:18865"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity","secondary_identifiers":["GO:0004147","MetaCyc:2.3.1.168-RXN","EC:2.3.1.168"],"synonyms":[{"name":"2-methylpropanoyl-CoA:enzyme-6-N-(dihydrolipoyl)lysine:S-(2-methylpropanoyl)transferase activity","type":"related"},{"name":"2-methylpropanoyl-CoA:enzyme-N6-(dihydrolipoyl)lysine:S-(2-methylpropanoyl)transferase activity","type":"related"},{"name":"dihydrolipoamide branched chain acyltransferase activity","type":"exact"},{"name":"dihydrolipoamide branched chain transacylase activity","type":"exact"},{"name":"dihydrolipoyl transacylase activity","type":"related"},{"name":"enzyme-dihydrolipoyllysine:2-methylpropanoyl-CoA S-(2-methylpropanoyl)transferase activity","type":"exact"}],"termid":"GO:0043754"}


id: GO:0044076
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a symbiont organism activates or increases the frequency, rate or extent of vacuole organization in its host organism.","definition_xrefs":["MITRE:tk"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by symbiont of host vacuole organization (obsolete GO:0044076)","synonyms":[{"name":"positive regulation by symbiont of host vacuole biogenesis","type":"related"},{"name":"positive regulation by symbiont of host vacuole organisation","type":"exact"},{"name":"positive regulation of host vacuole organization by symbiont","type":"exact"}],"termid":"GO:0044076"}


id: GO:0055001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a muscle cell over time, from its formation to the mature structure. Muscle cell development does not include the steps involved in committing an unspecified cell to the muscle cell fate.","definition_xrefs":["GOC:devbiol","CL:0000187"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell development","termid":"GO:0048468"},{"relation_name":"part_of","term_name":"muscle cell differentiation","termid":"GO:0042692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle cell development","secondary_identifiers":["GO:0048747"],"synonyms":[{"name":"muscle fiber development","type":"exact"},{"name":"muscle fibre development","type":"exact"},{"name":"myofiber development","type":"exact"},{"name":"myofibre development","type":"exact"}],"termid":"GO:0055001"}


id: PBO:0111813
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH domain","termid":"PBO:0111813"}


id: MONDO:0016150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete qualitative or quantitative defects of integrin alpha-7 (obsolete MONDO:0016150)","secondary_identifiers":["Orphanet:207098"],"synonyms":[{"name":"integrinopathy","type":"exact"}],"termid":"MONDO:0016150","xrefs":{"Monarch":{"xref_id":"0016150"}}}


id: PATO:0001781
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A thickness quality which lacks pattern.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thickness","termid":"PATO:0000915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"irregular thickness","termid":"PATO:0001781"}


id: FYPO:0005348
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which spindle pole body (SPB)-led chromosome movement is abnormal. SPB-led chromosome movement is a microtubule-based process in which chromosomes migrate as a result of rapid spindle pole body (SPB) and centrosome oscillations during mitotic interphase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle pole body localization","termid":"FYPO:0000534"},{"relation_name":"is_a","term_name":"abnormal microtubule-based movement during vegetative growth","termid":"FYPO:0005461"},{"relation_name":"is_a","term_name":"abnormal organelle localization","termid":"FYPO:0006329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal spindle pole body-led chromosome movement during mitotic interphase","synonyms":[{"name":"abnormal SPB-led chromosome movement during mitotic interphase","type":"exact"},{"name":"abnormal maintenance of SPB localization","type":"related"},{"name":"abnormal maintenance of mitotic spindle pole body localization","type":"related"},{"name":"abnormal mitotic SPB oscillation during mitotic interphase","type":"exact"},{"name":"abnormal mitotic spindle pole body movement during mitotic interphase","type":"exact"},{"name":"abnormal mitotic spindle pole body oscillation during mitotic interphase","type":"exact"},{"name":"abnormal spindle pole body-led chromosome movement during interphase of mitotic cell cycle","type":"related"},{"name":"abnormal spindle pole body-led chromosome movement during mitotic interphase during vegetative growth","type":"exact"},{"name":"increased spindle pole body-led chromosome movement during interphase of mitotic cell cycle","type":"related"}],"termid":"FYPO:0005348"}


id: PBO:0068580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 31, pseudogene","termid":"PBO:0068580"}


id: GO:0002730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of dendritic cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte mediated immunity","termid":"GO:0002703"},{"relation_name":"is_a","term_name":"regulation of cytokine production involved in immune response","termid":"GO:0002718"},{"relation_name":"regulates","term_name":"dendritic cell cytokine production","termid":"GO:0002371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of dendritic cell cytokine production","termid":"GO:0002730"}


id: GO:0047503
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (-)-borneol + NAD+ = (1S,4S)-camphor + H+ + NADH.","definition_xrefs":["RHEA:22128","EC:1.1.1.227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"(-)-borneol dehydrogenase activity","secondary_identifiers":["MetaCyc:--BORNEOL-DEHYDROGENASE-RXN","KEGG_REACTION:R02945"],"synonyms":[{"name":"(-)-borneol:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0047503"}


id: GO:1903082
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of C-C chemokine receptor CCR7 signaling pathway.","definition_xrefs":["GOC:TermGenie","PMID:11602640","GO_REF:0000058","GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of chemokine-mediated signaling pathway","termid":"GO:0070101"},{"relation_name":"is_a","term_name":"regulation of C-C chemokine receptor CCR7 signaling pathway","termid":"GO:1903080"},{"relation_name":"positively_regulates","term_name":"C-C chemokine receptor CCR7 signaling pathway","termid":"GO:0038118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of C-C chemokine receptor CCR7 signaling pathway","synonyms":[{"name":"activation of C-C chemokine receptor CCR7 signaling pathway","type":"narrow"},{"name":"activation of C-C chemokine receptor CCR7 signalling pathway","type":"narrow"},{"name":"activation of CCR7 signaling pathway","type":"related"},{"name":"positive regulation of C-C chemokine receptor CCR7 signalling pathway","type":"exact"},{"name":"positive regulation of CCR7 signaling pathway","type":"related"},{"name":"up regulation of C-C chemokine receptor CCR7 signaling pathway","type":"exact"},{"name":"up regulation of C-C chemokine receptor CCR7 signalling pathway","type":"exact"},{"name":"up regulation of CCR7 signaling pathway","type":"related"},{"name":"up-regulation of C-C chemokine receptor CCR7 signaling pathway","type":"exact"},{"name":"up-regulation of C-C chemokine receptor CCR7 signalling pathway","type":"exact"},{"name":"up-regulation of CCR7 signaling pathway","type":"related"},{"name":"upregulation of C-C chemokine receptor CCR7 signaling pathway","type":"exact"},{"name":"upregulation of C-C chemokine receptor CCR7 signalling pathway","type":"exact"},{"name":"upregulation of CCR7 signaling pathway","type":"related"}],"termid":"GO:1903082"}


id: GO:0042758
data:
  {"annotated_genes":["SJAG_04570"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113201],"is_not":false,"summary":null,"term":"GO:0042758"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a long-chain fatty acid. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["PMID:20043225"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid metabolic process","termid":"GO:0001676"},{"relation_name":"is_a","term_name":"fatty acid catabolic process","termid":"GO:0009062"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04570":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044248","GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"long-chain fatty acid catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"long-chain fatty acid breakdown","type":"exact"},{"name":"long-chain fatty acid catabolism","type":"exact"},{"name":"long-chain fatty acid degradation","type":"exact"}],"termid":"GO:0042758","terms_by_termid":{"GO:0042758":null}}


id: MONDO:0003944
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign smooth muscle neoplasm arising endobronchially. It is characterized by the presence of spindle cells with cigar-shaped nuclei, interlacing fascicles, and a whorled pattern.","definition_xrefs":["NCIT:C5661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bronchial neoplasm","termid":"MONDO:0002807"},{"relation_name":"is_a","term_name":"lung leiomyoma","termid":"MONDO:0003293"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endobronchial leiomyoma","secondary_identifiers":["DOID:6608","UMLS:C1333386","MEDGEN:232455"],"synonyms":[{"name":"bronchus lung leiomyoma","type":"exact"},{"name":"endobronchial leiomyoma","type":"exact"},{"name":"lung leiomyoma of bronchus","type":"exact"}],"termid":"MONDO:0003944","xrefs":{"Monarch":{"xref_id":"0003944"}}}


id: GO:0043710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a cell to a solid substrate, via cell adhesion molecules, contributing to the formation of a biofilm composed of microorganisms of different species.","definition_xrefs":["GOC:jl","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell adhesion involved in biofilm formation","termid":"GO:0043708"},{"relation_name":"part_of","term_name":"multi-species biofilm formation","termid":"GO:0044399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"cell adhesion involved in multi-species biofilm formation","synonyms":[{"name":"cell adhesion during multi-species biofilm formation","type":"related"}],"termid":"GO:0043710"}


id: GO:0019701
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The methylation of peptidyl-arginine on the internal nitrogen-5 (N5) atom (also called delta-nitrogen) to form peptidyl-N5-methyl-L-arginine.","definition_xrefs":["PMID:9792625","GOC:bf","RESID:AA0305"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-arginine N5-methylation (obsolete GO:0019701)","synonyms":[{"name":"peptidyl-arginine delta-N-methylation","type":"exact"}],"termid":"GO:0019701"}


id: GO:0070836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a caveola. A caveola is a plasma membrane raft that forms a small pit, depression, or invagination that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane.","definition_xrefs":["GOC:BHF","GOC:mah","GOC:vk","PMID:12633858"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane raft assembly","termid":"GO:0044854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0044085"],"is_obsolete":false,"name":"caveola assembly","synonyms":[{"name":"caveola formation","type":"exact"},{"name":"caveolar biogenesis","type":"related"}],"termid":"GO:0070836"}


id: GO:0019811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to cocaine (2-beta-carbomethoxy-3-beta-benzoxytropane), an alkaloid obtained from dried leaves of the South American shrub Erythroxylon coca or by chemical synthesis.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cation binding","termid":"GO:0043169"},{"relation_name":"is_a","term_name":"organic cyclic compound binding","termid":"GO:0097159"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"cocaine binding","termid":"GO:0019811"}


id: FYPO:0000507
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear export does not occur. Nuclear export is the directed movement of any substance out of the nucleus; export of all substances or a specific substance may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear export","termid":"FYPO:0000506"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished nuclear export","synonyms":[{"name":"abolished nuclear export during mitotic cell cycle","type":"related"},{"name":"absent nuclear export","type":"exact"},{"name":"nuclear export abolished","type":"exact"},{"name":"nuclear export abolished during vegetative growth","type":"exact"},{"name":"nuclear export: absent","type":"related"}],"termid":"FYPO:0000507"}


id: PBO:0074819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 18B","termid":"PBO:0074819"}


id: GO:0021874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of the target cell that contributes to the self renewal of neuroblasts in the forebrain.","definition_xrefs":["GOC:dph","GOC:jid","PMID:16226447","GO_REF:0000021","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Wnt signaling pathway","termid":"GO:0016055"},{"relation_name":"part_of","term_name":"forebrain neuroblast division","termid":"GO:0021873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Wnt signaling pathway involved in forebrain neuroblast division","synonyms":[{"name":"Wnt receptor signaling pathway involved in forebrain neuroblast division","type":"exact"},{"name":"Wnt receptor signalling pathway in forebrain neuroblast division","type":"exact"},{"name":"Wnt-activated signaling pathway involved in forebrain neuroblast division","type":"exact"}],"termid":"GO:0021874"}


id: MONDO:0016002
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of Ehlers-Danlos syndrome characterized by severe hypotonia and kyphoscoliosis at birth, generalized joint hyperextensibility and ocular globe fragility.","definition_xrefs":["Orphanet:1900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome","termid":"MONDO:0020066"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005328"],"is_obsolete":false,"name":"Ehlers-Danlos syndrome, kyphoscoliotic type 1","secondary_identifiers":["MEDGEN:75672","SCTID:718211004","MESH:C536198","OMIM:225400","UMLS:C0268342","NANDO:2201259","DOID:0080734","NANDO:1200649","NCIT:C125700","GARD:22216"],"synonyms":[{"name":"EDS 6","type":"exact"},{"name":"EDS 6 (formerly)","type":"related"},{"name":"EDS VI","type":"related"},{"name":"EDS VIA","type":"narrow"},{"name":"EDS, kyphoscoliotic type","type":"exact"},{"name":"EDS, oculoscoliotic type","type":"exact"},{"name":"EDS6","type":"exact"},{"name":"EDS6A, formerly","type":"related"},{"name":"EDSKSCL1","type":"related"},{"name":"Ehlers-Danlos syndrome kyphoscoliotic type","type":"exact"},{"name":"Ehlers-Danlos syndrome oculoscoliotic type","type":"related"},{"name":"Ehlers-Danlos syndrome type 6 (formerly)","type":"related"},{"name":"Ehlers-Danlos syndrome type 6A","type":"narrow"},{"name":"Ehlers-Danlos syndrome type 6A (formerly)","type":"related"},{"name":"Ehlers-Danlos syndrome, kyphoscoliosis type","type":"related"},{"name":"Ehlers-Danlos syndrome, kyphoscoliotic type","type":"exact"},{"name":"Ehlers-Danlos syndrome, kyphoscoliotic type 1","type":"exact"},{"name":"Ehlers-Danlos syndrome, kyphoscoliotic type, 1","type":"related"},{"name":"Ehlers-Danlos syndrome, ocular-scoliotic type","type":"related"},{"name":"Ehlers-Danlos syndrome, oculoscoliotic type","type":"exact"},{"name":"Ehlers-Danlos syndrome, type 6","type":"exact"},{"name":"Ehlers-Danlos syndrome, type 6 A","type":"related"},{"name":"Ehlers-Danlos syndrome, type VI","type":"related"},{"name":"Ehlers-Danlos syndrome, type VIA","type":"narrow"},{"name":"Ehlers-Danlos syndrome, type VIA, formerly","type":"narrow"},{"name":"Ehlers-Danlos syndrome, type Via","type":"narrow"},{"name":"Ehlers-Danlos syndrome, type Via, formerly","type":"narrow"},{"name":"kEDS","type":"related"},{"name":"kyphoscoliotic EDS","type":"related"},{"name":"kyphoscoliotic Ehlers-Danlos syndrome","type":"related"},{"name":"kyphoscoliotic Ehlers-Danlos syndrome due to lysyl hydroxylase 1 deficiency","type":"exact"},{"name":"nevo syndrome","type":"exact"}],"termid":"MONDO:0016002","xrefs":{"Monarch":{"xref_id":"0016002"}}}


id: PBO:0073247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 1","termid":"PBO:0073247"}


id: PBO:0027936
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_population_growth_on_glycerol_carbon_source","termid":"PBO:0027936"}


id: MONDO:0015401
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Maxillary arteriovenous malformation is a rare vascular anomaly characterized by an abnormal connection of the arterial and venous vasculature, without capillary connections, in the maxillofacial area, usually presenting with chronic, intermittent, and potentially life-threatening, hemorrhage. Association with infection, pain, pressure, pulsation, swelling, facial asymmetry, headache, ocular pain, tinnitus, otalgia, epistaxis, toothache and/or teeth mobility and compressibility into their sockets is possible, although it may also be asymptomatic.","definition_xrefs":["Orphanet:141171"],"direct_ancestors":[{"relation_name":"is_a","term_name":"facial arteriovenous malformation","termid":"MONDO:0015500"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maxillary arteriovenous malformation","secondary_identifiers":["SCTID:703335004","UMLS:C3839810","icd11.foundation:1755286955","GARD:19956","MEDGEN:825655"],"synonyms":[{"name":"arteriovenous malformation of maxilla","type":"exact"}],"termid":"MONDO:0015401","xrefs":{"Monarch":{"xref_id":"0015401"}}}


id: MONDO:0957221
data:
  {"annotated_genes":["SJAG_01159"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86059],"is_not":false,"summary":null,"term":"MONDO:0957221"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01159":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"spastic paraplegia 70, autosomal recessive","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070454","OMIM:620323"],"termid":"MONDO:0957221","terms_by_termid":{"MONDO:0957221":null},"xrefs":{"Monarch":{"xref_id":"0957221"}}}


id: GO:0001505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates levels of neurotransmitter.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of neurotransmitter levels (obsolete GO:0001505)","termid":"GO:0001505"}


id: MONDO:0002192
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An uncommon benign lesion in the vulva. It manifests with multiple papular lesions which are purple in color. They are usually asymptomatic. Histologically, there is hyperkeratosis, papillomatosis, and dilated blood vessels in the papillary dermis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vulvar benign neoplasm","termid":"MONDO:0000643"},{"relation_name":"is_a","term_name":"angiokeratoma of Fordyce","termid":"MONDO:0003954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"vulvar angiokeratoma","secondary_identifiers":["SCTID:402841001","DOID:2066","MEDGEN:266144","UMLS:C1274281","NCIT:C8596"],"synonyms":[{"name":"angiokeratoma of Fordyce of mammalian vulva","type":"related"},{"name":"angiokeratoma of mammalian vulva","type":"exact"},{"name":"mammalian vulva angiokeratoma","type":"exact"},{"name":"mammalian vulva angiokeratoma of Fordyce","type":"exact"}],"termid":"MONDO:0002192","xrefs":{"Monarch":{"xref_id":"0002192"}}}


id: PBO:0043479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canopy FGF signaling regulator 2","termid":"PBO:0043479"}


id: PBO:0028994
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_proline_import","termid":"PBO:0028994"}


id: GO:0003264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cardioblast proliferation. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell proliferation involved in heart morphogenesis","termid":"GO:2000136"},{"relation_name":"regulates","term_name":"cardioblast proliferation","termid":"GO:0003263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cardioblast proliferation","termid":"GO:0003264"}


id: PBO:0029088
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_tRNA_(guanine(9)-N(1))-methyltransferase_activity","termid":"PBO:0029088"}


id: PBO:0075509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal peptidase complex subunit 2","termid":"PBO:0075509"}


id: MONDO:0005392
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital or acquired spinal deformity characterized by lateral curvature of the spine.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disease of bone structure","termid":"MONDO:0000836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scoliosis","secondary_identifiers":["ICD9:737.43","MESH:D012600","DOID:0060249","ICD10CM:M41","icd11.foundation:1925604007","MEDGEN:11348","SCTID:298382003","UMLS:C0036439","EFO:0004273","HP:0002650","NCIT:C78603"],"termid":"MONDO:0005392","xrefs":{"Monarch":{"xref_id":"0005392"}}}


id: PBO:0108978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm associated microtubule inner protein 3","termid":"PBO:0108978"}


id: PR:O14236
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nucleolar GTP-binding protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar GTP-binding protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.03c","secondary_identifiers":["UniProtKB:O14236"],"synonyms":[{"name":"SPAC6F6.03c","type":"related"},{"name":"Spom972h-GNL2","type":"exact"}],"termid":"PR:O14236"}


id: GO:0007260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group to a tyrosine residue of a STAT (Signal Transducer and Activator of Transcription) protein.","definition_xrefs":["GOC:jl","PMID:10918594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-tyrosine phosphorylation","termid":"GO:0018108"},{"relation_name":"part_of","term_name":"cell surface receptor signaling pathway via JAK-STAT","termid":"GO:0007259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"tyrosine phosphorylation of STAT protein","secondary_identifiers":["GO:0042503","GO:0042505","GO:0042506","GO:0042507","GO:0042508","GO:0042504","GO:0042502"],"synonyms":[{"name":"tyrosine phosphorylation of Stat1 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat2 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat3 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat4 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat5 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat6 protein","type":"narrow"},{"name":"tyrosine phosphorylation of Stat7 protein","type":"narrow"}],"termid":"GO:0007260"}


id: PBO:0045149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal heavy chain 7","termid":"PBO:0045149"}


id: FYECO:0000315
data:
  {"alleles_by_uniquename":{"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"}},"annotation_feature_type":"gene","cv_annotations":{"fission_yeast_phenotype_condition":[{"annotations":[118963],"is_not":false,"summary":null,"term":"FYECO:0000315"}]},"cv_name":"fission_yeast_phenotype_condition","definition":"Cells or samples were exposed to ultraviolet light.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02527":null},"genotype_count":1,"genotypes_by_uniquename":{"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown":{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]}},"is_obsolete":false,"name":"UV","references_by_uniquename":{"PMID:37233261":null},"single_locus_annotated_genes":["SJAG_02527"],"single_locus_genotype_uniquenames":["lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown"],"synonyms":[{"name":"UV irradiation","type":"exact"},{"name":"ultraviolet light","type":"exact"}],"termid":"FYECO:0000315","terms_by_termid":{"FYECO:0000315":null}}


id: GO:0044431
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of the Golgi apparatus, a compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete Golgi apparatus part (obsolete GO:0044431)","synonyms":[{"name":"Golgi component","type":"exact"},{"name":"Golgi subcomponent","type":"exact"}],"termid":"GO:0044431"}


id: MONDO:0009354
data:
  {"annotated_genes":["SJAG_04042","SJAG_04459"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84776,84777],"is_not":false,"summary":null,"term":"MONDO:0009354"}]},"cv_name":"mondo","definition":"An autosomal recessive condition caused by mutation(s) in the MTRR gene, encoding methionine synthase reductase. It is characterized by homocystinuria and megaloblastic anemia.","definition_xrefs":["NCIT:C142173"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"methylmalonic acidemia","termid":"MONDO:0002012"},{"relation_name":"is_a","term_name":"homocystinuria without methylmalonic aciduria","termid":"MONDO:0018964"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04042":null,"SJAG_04459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570","MONDO:0005066","MONDO:0004736","MONDO:0006025"],"is_obsolete":false,"name":"methylcobalamin deficiency type cblE","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:344640","OMIM:236270","NANDO:2201109","MESH:C565510","UMLS:C1856057","Orphanet:2169","DOID:0050732","DOID:0112255","GARD:3576"],"synonyms":[{"name":"HMAE","type":"related"},{"name":"functional methionine synthase deficiency type cblE","type":"exact"},{"name":"homocystinuria due to defect in methylation Cbl e","type":"related"},{"name":"homocystinuria-megaloblastic Anaemia due to defect in cobalamin metabolism, cblE complementation type","type":"related"},{"name":"homocystinuria-megaloblastic Anemia due to defect in cobalamin metabolism, cblE complementation type","type":"related"},{"name":"homocystinuria-megaloblastic anemia, cbl e type","type":"exact"},{"name":"homocystinuria-megaloblastic anemia, cblE complementation type","type":"related"},{"name":"methylcobalamin deficiency type cblE","type":"exact"},{"name":"methylcobalamin deficiency, cblE type","type":"related"},{"name":"methylmalonic aciduria and homocystinuria type cblE","type":"related"},{"name":"vitamin B12-responsive homocystinuria, cblE type","type":"related"}],"termid":"MONDO:0009354","terms_by_termid":{"MONDO:0009354":null},"xrefs":{"Monarch":{"xref_id":"0009354"}}}


id: PBO:0026927
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_serine_phosphorylation","termid":"PBO:0026927"}


id: GO:0045963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving dopamine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dopamine metabolic process","termid":"GO:0042053"},{"relation_name":"is_a","term_name":"negative regulation of catecholamine metabolic process","termid":"GO:0045914"},{"relation_name":"negatively_regulates","term_name":"dopamine metabolic process","termid":"GO:0042417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dopamine metabolic process","synonyms":[{"name":"down regulation of dopamine metabolic process","type":"exact"},{"name":"down-regulation of dopamine metabolic process","type":"exact"},{"name":"downregulation of dopamine metabolic process","type":"exact"},{"name":"inhibition of dopamine metabolic process","type":"narrow"},{"name":"negative regulation of dopamine metabolism","type":"exact"}],"termid":"GO:0045963"}


id: GO:0070911
data:
  {"annotated_genes":["SJAG_04778"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87689],"is_not":false,"summary":null,"term":"GO:0070911"}]},"cv_name":"biological_process","definition":"The nucleotide-excision repair process in which DNA lesions are removed from nontranscribed strands and from transcriptionally silent regions over the entire genome.","definition_xrefs":["PMID:10197977","PMID:18794354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair","termid":"GO:0006289"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04778":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0008150","GO:0006281","GO:0006259"],"is_obsolete":false,"name":"global genome nucleotide-excision repair","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5696399"],"synonyms":[{"name":"GG-NER","type":"exact"},{"name":"GGR","type":"exact"},{"name":"global genome NER","type":"exact"},{"name":"global genomic nucleotide-excision repair","type":"exact"},{"name":"global genomic repair","type":"exact"}],"termid":"GO:0070911","terms_by_termid":{"GO:0070911":null}}


id: FYPO:0002151
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A viability phenotype in which a spore is unable to survive under conditions in which wild type spores survive. An inviable spore does not germinate.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable cell","termid":"FYPO:0000049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"inviable spore","secondary_identifiers":["FYPO:0000306"],"synonyms":[{"name":"abolished spore germination","type":"related"},{"name":"decreased spore viability","type":"related"},{"name":"lethal in spore","type":"exact"},{"name":"spore germination abolished","type":"related"}],"termid":"FYPO:0002151"}


id: RO:0002567
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation that holds between elements of a musculoskeletal system or its analogs.","direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_related_to","termid":"RO:0002328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biomechanically_related_to","termid":"RO:0002567"}


id: PBO:0056509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallo-beta-lactamase domain containing 1","termid":"PBO:0056509"}


id: GO:0036354
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a = bacteriochlorophyllide a + 2 H+.","definition_xrefs":["PMID:8437569","GOC:crds","InterPro:IPR005903","MetaCyc:RXN-8787"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase activity","secondary_identifiers":["RHEA:19733"],"termid":"GO:0036354"}


id: FYPO:0006917
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the metaphase/anaphase transition of mitosis begins at the normal (i.e. indistinguishable from wild type) time relative to other cell cycle events.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal regulation of mitotic cell cycle","termid":"FYPO:0001928"},{"relation_name":"is_a","term_name":"normal mitotic cell cycle process","termid":"FYPO:0002741"},{"relation_name":"is_a","term_name":"normal cell cycle phase transition","termid":"FYPO:0006916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal onset of mitotic metaphase/anaphase transition","synonyms":[{"name":"normal duration of metaphase during mitosis","type":"related"},{"name":"normal duration of mitotic metaphase","type":"related"},{"name":"normal onset of metaphase/anaphase transition of mitotic nuclear division","type":"exact"},{"name":"normal timing of mitotic metaphase/anaphase transition","type":"related"}],"termid":"FYPO:0006917"}


id: MONDO:0010658
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked intellectual disability, Wilson type is characterized by severe intellectual deficit with mutism, epilepsy, growth retardation and recurrent infections. It has been described in three males from three generations of one family. The causative gene has been localized to the 11p region of the X chromosome.","definition_xrefs":["Orphanet:85290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndromic X-linked intellectual disability 12","secondary_identifiers":["MESH:C564106","DOID:0060804","GARD:16747","MEDGEN:333405","OMIM:309545","SCTID:719009006","UMLS:C1839792"],"synonyms":[{"name":"MRXS12","type":"related"},{"name":"X-linked intellectual disability, Wilson type","type":"exact"},{"name":"intellectual disability, X-linked, syndromic 12","type":"exact"},{"name":"mental retardation, X-linked, syndromic 12","type":"exact"},{"name":"syndromic X-linked intellectual disability type 12","type":"exact"}],"termid":"MONDO:0010658","xrefs":{"Monarch":{"xref_id":"0010658"}}}


id: GO:0072495
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A class of nuclear body in the eukaryotic host cell, first seen after silver staining by Ramon y Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA. The host is the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell nuclear part","termid":"GO:0044094"},{"relation_name":"part_of","term_name":"host cell nucleoplasm","termid":"GO:0044095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell Cajal body","synonyms":[{"name":"coiled body of host","type":"exact"},{"name":"host cell coiled body","type":"exact"}],"termid":"GO:0072495"}


id: MONDO:0016861
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Alagille syndrome","termid":"MONDO:0007318"},{"relation_name":"is_a","term_name":"partial monosomy of the short arm of chromosome 20","termid":"MONDO:0016898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0004335","MONDO:0005328","MONDO:0002515"],"is_obsolete":false,"name":"Alagille syndrome due to 20p12 microdeletion","secondary_identifiers":["Orphanet:261600","GARD:17250","MEDGEN:1826025","UMLS:C5679679"],"synonyms":[{"name":"Alagille syndrome due to del(20)(p12)","type":"exact"},{"name":"Alagille syndrome due to monosomy 20p12","type":"exact"},{"name":"Alagille-Watson syndrome due to monosomy 20p12","type":"exact"},{"name":"Arteriohepatic dysplasia due to monosomy 20p12","type":"exact"},{"name":"syndromic bile duct paucity due to monosomy 20p12","type":"exact"}],"termid":"MONDO:0016861","xrefs":{"Monarch":{"xref_id":"0016861"}}}


id: FYPO:0006704
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of sedoheptulose-7-phosphate measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular sedoheptulose-7-phosphate level","synonyms":[{"name":"decreased cellular sedoheptulose-7-phosphate level during mitotic cell cycle","type":"related"},{"name":"decreased cellular sedoheptulose-7-phosphate level during vegetative growth","type":"exact"},{"name":"reduced cellular sedoheptulose-7-phosphate level","type":"exact"}],"termid":"FYPO:0006704"}


id: PBO:0071270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL24 pseudogene 4","termid":"PBO:0071270"}


id: GO:0071374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a parathyroid hormone stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to hormone stimulus","termid":"GO:0032870"},{"relation_name":"is_a","term_name":"response to parathyroid hormone","termid":"GO:0071107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to parathyroid hormone stimulus","termid":"GO:0071374"}


id: MONDO:0008111
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oculodentodigital dysplasia (ODDD) is characterized by craniofacial, neurologic, limb and ocular abnormalities.","definition_xrefs":["Orphanet:2710"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with increased bone density (obsolete MONDO:0019703)","termid":"MONDO:0019703"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005093"],"is_obsolete":false,"name":"oculodentodigital dysplasia","secondary_identifiers":["MedDRA:10063691","OMIM:164200","ICD9:759.89","NORD:1519","SCTID:38215007","UMLS:C0812437","MESH:C563160","DOID:0060291","GARD:7239","MEDGEN:167236"],"synonyms":[{"name":"Meyer-Schwickerath syndrome","type":"exact"},{"name":"ODDD","type":"related"},{"name":"ODDD syndrome","type":"exact"},{"name":"Oculo-Dento-Digital Dysplasia","type":"exact"},{"name":"oculo-dento-digital dysplasia","type":"exact"},{"name":"oculo-dento-digital syndrome","type":"related"},{"name":"oculodentodigital dysplasia","type":"exact"},{"name":"oculodentodigital syndrome","type":"related"},{"name":"oculodentoosseous dysplasia","type":"exact"},{"name":"odd syndrome","type":"exact"}],"termid":"MONDO:0008111","xrefs":{"Monarch":{"xref_id":"0008111"}}}


id: PBO:0053668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 847","termid":"PBO:0053668"}


id: GO:0048143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in morphology and behavior of an astrocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor.","definition_xrefs":["PMID:10695728","PMID:12529254","GOC:mgi_curators","PMID:10526094","PMID:12580336","PMID:9585813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell activation","termid":"GO:0061900"},{"relation_name":"part_of","term_name":"astrocyte development","termid":"GO:0014002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"astrocyte activation","termid":"GO:0048143"}


id: FYPO:0001980
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which RNA processing is normal (i.e. indistinguishable from wild type). RNA processing is the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.","definition_xrefs":["PomBase:mah","GO:0006396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression phenotype","termid":"FYPO:0000142"},{"relation_name":"is_a","term_name":"normal metabolic process during vegetative growth","termid":"FYPO:0000859"},{"relation_name":"is_a","term_name":"normal RNA metabolic process","termid":"FYPO:0004850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal RNA processing","synonyms":[{"name":"normal RNA processing during mitotic cell cycle","type":"related"},{"name":"normal RNA processing during vegetative growth","type":"exact"}],"termid":"FYPO:0001980"}


id: GO:0071637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of monocyte chemotactic protein-1.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chemokine production","termid":"GO:0032642"},{"relation_name":"regulates","term_name":"monocyte chemotactic protein-1 production","termid":"GO:0071605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of monocyte chemotactic protein-1 production","synonyms":[{"name":"regulation of CCL2 production","type":"exact"},{"name":"regulation of MCP-1 production","type":"exact"}],"termid":"GO:0071637"}


id: PBO:0043286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain family 4 member O, pseudogene","termid":"PBO:0043286"}


id: GO:2000572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of interleukin-4-dependent isotype switching to IgE isotypes.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of isotype switching to IgE isotypes","termid":"GO:0048295"},{"relation_name":"is_a","term_name":"regulation of interleukin-4-dependent isotype switching to IgE isotypes","termid":"GO:2000571"},{"relation_name":"positively_regulates","term_name":"interleukin-4-dependent isotype switching to IgE isotypes","termid":"GO:0035708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0006310"},{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0010467","GO:0006310","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-4-dependent isotype switching to IgE isotypes","synonyms":[{"name":"positive regulation of IL-4-dependent isotype switching to IgE isotypes","type":"exact"}],"termid":"GO:2000572"}


id: PBO:0069108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 356, pseudogene","termid":"PBO:0069108"}


id: GO:0046350
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving galactosaminoglycans, any one of a group of polysaccharides that contain amino sugars derived from the galactose.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete galactosaminoglycan metabolic process (obsolete GO:0046350)","synonyms":[{"name":"galactosaminoglycan metabolism","type":"exact"}],"termid":"GO:0046350"}


id: PBO:0065425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 20S subunit beta 10","termid":"PBO:0065425"}


id: MONDO:0005607
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type of chronic obstructive pulmonary disease characterized by chronic inflammation in the bronchial tree that results in edema, mucus production, obstruction, and reduced airflow to and from the lung alveoli. The most common cause is tobacco smoking. Signs and symptoms include coughing with excessive mucus production, and shortness of breath.","definition_xrefs":["NCIT:C26722"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bronchitis","termid":"MONDO:0003781"},{"relation_name":"is_a","term_name":"chronic obstructive pulmonary disease","termid":"MONDO:0005002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic bronchitis","secondary_identifiers":["icd11.foundation:290835130","SCTID:63480004","MEDGEN:3084","MESH:D029481","ICD9:491.8","UMLS:C0008677","ICD9:491","ICD9:491.9","EFO:0006505"],"synonyms":[{"name":"bronchitis, chronic","type":"exact"}],"termid":"MONDO:0005607","xrefs":{"Monarch":{"xref_id":"0005607"}}}


id: GO:0044278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disruption of the cell wall of another organism, leading to damage or temporary subversion of the cell wall.","definition_xrefs":["PMID:36738900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disruption of cellular anatomical structure in another organism","termid":"GO:0140975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"disruption of cell wall in another organism","synonyms":[{"name":"cell wall disruption in another organism","type":"exact"},{"name":"cell wall disruption in other organism","type":"exact"}],"termid":"GO:0044278"}


id: MONDO:0015730
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mosaic trisomy 17 is a rare chromosomal anomaly syndrome, with a highly variable clinical presentation, mostly characterized by growth delay, intellectual disability, body asymmetry with leg length differentiation, scoliosis, and congenital heart anomalies (e.g. ventricular septal defect). Prenatal ultrasound findings include intrauterine growth retardation, nuchal thickening brain anomalies (e.g. cerebellar hypoplasia), pleural effusion and single umbilical artery. Patients with no associated malformations have also been reported.","definition_xrefs":["Orphanet:1711"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 17 disorder","termid":"MONDO:0020583"},{"relation_name":"is_a","term_name":"trisomy","termid":"MONDO:0700065"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mosaic trisomy 17","secondary_identifiers":["SCTID:764622004","UMLS:C1096168","GARD:5317","MEDGEN:202107","NCIT:C37865","MESH:C538044"],"synonyms":[{"name":"Mosaic trisomy chromosome 17","type":"exact"},{"name":"Mosaic trisomy type 17","type":"exact"},{"name":"chromosome 17 duplication","type":"related"},{"name":"chromosome 17 trisomy","type":"related"},{"name":"chromosome 17, trisomy","type":"related"},{"name":"chromosome 17, trisomy mosaicism","type":"related"},{"name":"trisomy 17","type":"related"},{"name":"trisomy 17 mosaicism","type":"exact"}],"termid":"MONDO:0015730","xrefs":{"Monarch":{"xref_id":"0015730"}}}


id: GO:0051509
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-glucose + tomatidine = UDP + O-glucosyl-tomatidine.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete tomatidine UDP-glucosyltransferase activity (obsolete GO:0051509)","termid":"GO:0051509"}


id: PR:P87227
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A centromere protein I that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00370","PANTHER:PTHR15408:SF3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inner centromere protein mis6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.20c","secondary_identifiers":["UniProtKB:P87227"],"synonyms":[{"name":"Spom972h-CENPI","type":"exact"},{"name":"sim4 complex subunit mis6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87227"}


id: GO:0016493
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a C-C chemokine and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. C-C chemokines do not have an amino acid between the first two cysteines of the characteristic four-cysteine motif.","definition_xrefs":["GOC:signaling","PMID:8662823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine receptor activity","termid":"GO:0004950"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"C-C chemokine receptor activity","termid":"GO:0016493"}


id: PATO:0000598
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000598 relative width value (obsolete PATO:0000598)","termid":"PATO:0000598"}


id: PBO:0089218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIA complex large subunit Toa1","termid":"PBO:0089218"}


id: MONDO:1011894
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"degenerative encephalopathy, non-human animal","secondary_identifiers":["OMIA:002055"],"termid":"MONDO:1011894","xrefs":{"Monarch":{"xref_id":"1011894"}}}


id: PBO:0026949
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_binding_at_centromere_central_core","termid":"PBO:0026949"}


id: MONDO:0005716
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A pleuropneumonia of cattle and goats caused by species of mycoplasma.","definition_xrefs":["MESH:D011002"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pneumonia","termid":"MONDO:0005249"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contagious pleuropneumonia","secondary_identifiers":["MEDGEN:19357","UMLS:C0032243","EFO:0007221"],"termid":"MONDO:0005716","xrefs":{"Monarch":{"xref_id":"0005716"}}}


id: FYPO:0007725
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to late endosomes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to late endosome","synonyms":[{"name":"normal protein localisation to late endosome","type":"exact"},{"name":"normal protein localization to PVE","type":"exact"},{"name":"normal protein localization to late endosome during mitotic cell cycle","type":"related"},{"name":"normal protein localization to late endosome during vegetative growth","type":"exact"},{"name":"normal protein localization to prevacuolar compartment","type":"exact"},{"name":"normal protein localization to prevacuolar endosome","type":"exact"}],"termid":"FYPO:0007725"}


id: PBO:0059349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S15","termid":"PBO:0059349"}


id: GO:0141137
data:
  {"annotated_genes":["SJAG_03576","SJAG_01658","SJAG_01110","SJAG_02768","SJAG_05192","SJAG_00045","SJAG_00641","SJAG_00581","SJAG_02447","SJAG_04005","SJAG_01016","SJAG_03787","SJAG_00441","SJAG_02589","SJAG_05020","SJAG_01465","SJAG_03944","SJAG_01804","SJAG_01230","SJAG_00440","SJAG_02066","SJAG_02458","SJAG_04989","SJAG_02170","SJAG_00584","SJAG_04274","SJAG_03255","SJAG_03839","SJAG_00896","SJAG_00184","SJAG_03752","SJAG_02869","SJAG_00739","SJAG_04205","SJAG_04755","SJAG_04758","SJAG_03033","SJAG_02254","SJAG_03431","SJAG_04194","SJAG_02906","SJAG_03366","SJAG_02329","SJAG_03776","SJAG_01325","SJAG_02549","SJAG_00087","SJAG_02773","SJAG_00349","SJAG_03579","SJAG_02466","SJAG_01111","SJAG_04038","SJAG_00873","SJAG_01611","SJAG_05313","SJAG_04097","SJAG_04213","SJAG_03758","SJAG_01475","SJAG_01622","SJAG_03884","SJAG_07011","SJAG_03599","SJAG_00743","SJAG_00735","SJAG_02303","SJAG_04613","SJAG_04596","SJAG_03694","SJAG_02571","SJAG_04576","SJAG_03145","SJAG_02541","SJAG_02981","SJAG_02927","SJAG_01711","SJAG_03441","SJAG_03668","SJAG_00868","SJAG_02314","SJAG_00746","SJAG_00769","SJAG_01653","SJAG_01513","SJAG_02872","SJAG_02798","SJAG_02385","SJAG_02500","SJAG_02846"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[115794,106909,112761,88390,91807,93627,95396,96154,114163,114451,93814,89581,95949,98008,113665,108803,107925,112420,112593,94148,88796,116711,111996,87859,94976,114699,116985,93281,95390,115148,98891,90224,102852,98646,108927,104042,110062,90210,90103,113749,115733,109927,88007,89308,117006,93641,106215,108527,96589,105097,100468,94951,115983,106367,117054,93517,87318,93689,93015,104491,114832,113838,93717,107147,106796,104499,103335,109040,116349,101052,98173,97321,97742,90922,102603,107346,111203,112576,105239,113676,87175,87497,102268,92299,114846,116895,117402,93661,88623,87674],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045815"}]},"cv_name":"biological_process","definition":"An epigenetic process that increases gene expression at specific genomic regions through chromatin remodeling either by modifying higher order chromatin fiber structure, nucleosomal histones, or the cytosine DNA demethylation.","definition_xrefs":["PMID:36618446"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of gene expression","termid":"GO:0010628"},{"relation_name":"is_a","term_name":"epigenetic regulation of gene expression","termid":"GO:0040029"}],"gene_count":90,"genes_by_uniquename":{"SJAG_00045":null,"SJAG_00087":null,"SJAG_00184":null,"SJAG_00349":null,"SJAG_00440":null,"SJAG_00441":null,"SJAG_00581":null,"SJAG_00584":null,"SJAG_00641":null,"SJAG_00735":null,"SJAG_00739":null,"SJAG_00743":null,"SJAG_00746":null,"SJAG_00769":null,"SJAG_00868":null,"SJAG_00873":null,"SJAG_00896":null,"SJAG_01016":null,"SJAG_01110":null,"SJAG_01111":null,"SJAG_01230":null,"SJAG_01325":null,"SJAG_01465":null,"SJAG_01475":null,"SJAG_01513":null,"SJAG_01611":null,"SJAG_01622":null,"SJAG_01653":null,"SJAG_01658":null,"SJAG_01711":null,"SJAG_01804":null,"SJAG_02066":null,"SJAG_02170":null,"SJAG_02254":null,"SJAG_02303":null,"SJAG_02314":null,"SJAG_02329":null,"SJAG_02385":null,"SJAG_02447":null,"SJAG_02458":null,"SJAG_02466":null,"SJAG_02500":null,"SJAG_02541":null,"SJAG_02549":null,"SJAG_02571":null,"SJAG_02589":null,"SJAG_02768":null,"SJAG_02773":null,"SJAG_02798":null,"SJAG_02846":null,"SJAG_02869":null,"SJAG_02872":null,"SJAG_02906":null,"SJAG_02927":null,"SJAG_02981":null,"SJAG_03033":null,"SJAG_03145":null,"SJAG_03255":null,"SJAG_03366":null,"SJAG_03431":null,"SJAG_03441":null,"SJAG_03576":null,"SJAG_03579":null,"SJAG_03599":null,"SJAG_03668":null,"SJAG_03694":null,"SJAG_03752":null,"SJAG_03758":null,"SJAG_03776":null,"SJAG_03787":null,"SJAG_03839":null,"SJAG_03884":null,"SJAG_03944":null,"SJAG_04005":null,"SJAG_04038":null,"SJAG_04097":null,"SJAG_04194":null,"SJAG_04205":null,"SJAG_04213":null,"SJAG_04274":null,"SJAG_04576":null,"SJAG_04596":null,"SJAG_04613":null,"SJAG_04755":null,"SJAG_04758":null,"SJAG_04989":null,"SJAG_05020":null,"SJAG_05192":null,"SJAG_05313":null,"SJAG_07011":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006325","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of gene expression, epigenetic","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of gene expression, epigenetic","type":"exact"},{"name":"up regulation of gene expression, epigenetic","type":"exact"},{"name":"up-regulation of gene expression, epigenetic","type":"exact"},{"name":"upregulation of gene expression, epigenetic","type":"exact"}],"termid":"GO:0141137","terms_by_termid":{"GO:0045815":null}}


id: MONDO:0019995
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Peripheral resistance to thyroid hormones may be a cause of permanent congenital hypothyroidism, a permanent thyroid hormone deficiency that is present from birth.","definition_xrefs":["Orphanet:97927"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral hypothyroidism","termid":"MONDO:0016412"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peripheral resistance to thyroid hormones","secondary_identifiers":["GARD:12734","SCTID:718193005","MEDGEN:902322","UMLS:C4273673"],"termid":"MONDO:0019995","xrefs":{"Monarch":{"xref_id":"0019995"}}}


id: GO:0015594
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2O + putrescine(out) -> ADP + phosphate + putrescine(in).","definition_xrefs":["EC:7.6.2.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ABC-type polyamine transporter activity","termid":"GO:0015417"},{"relation_name":"is_a","term_name":"putrescine transmembrane transporter activity","termid":"GO:0015489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"ABC-type putrescine transporter activity","secondary_identifiers":["MetaCyc:ABC-25-RXN","RHEA:29995","EC:7.6.2.16"],"synonyms":[{"name":"ATPase-coupled putrescine transmembrane transporter activity","type":"related"},{"name":"putrescine porter activity","type":"broad"},{"name":"putrescine-importing ATPase activity","type":"narrow"}],"termid":"GO:0015594"}


id: GO:0004016
data:
  {"annotated_genes":["SJAG_01254"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105377],"is_not":false,"summary":null,"term":"GO:0004016"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate.","definition_xrefs":["EC:4.6.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclase activity","termid":"GO:0009975"},{"relation_name":"is_a","term_name":"phosphorus-oxygen lyase activity","termid":"GO:0016849"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01254":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0009975"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824","GO:0009975"],"is_obsolete":false,"name":"adenylate cyclase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-164377","Reactome:R-HSA-392129","Reactome:R-HSA-170676","Reactome:R-HSA-381607","RHEA:15389","MetaCyc:ADENYLATECYC-RXN","Reactome:R-HSA-5610727","Reactome:R-HSA-9712183","Reactome:R-HSA-5211224"],"synonyms":[{"name":"3',5'-cyclic AMP synthetase activity","type":"related"},{"name":"ATP diphosphate-lyase (cyclizing) activity","type":"related"},{"name":"ATP diphosphate-lyase (cyclizing; 3',5'-cyclic-AMP-forming) activity","type":"related"},{"name":"ATP pyrophosphate-lyase activity","type":"related"},{"name":"adenyl cyclase activity","type":"related"},{"name":"adenylyl cyclase activity","type":"exact"},{"name":"adenylylcyclase activity","type":"related"},{"name":"cAMP generating peptide activity","type":"related"}],"termid":"GO:0004016","terms_by_termid":{"GO:0004016":null}}


id: PBO:0109392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 21","termid":"PBO:0109392"}


id: PBO:0056712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEMO1 pseudogene 4","termid":"PBO:0056712"}


id: PBO:0045087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrolipoamide S-succinyltransferase","termid":"PBO:0045087"}


id: GO:0071719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed, sodium-independent, movement of leukotrienes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Leukotrienes are linear C20 endogenous metabolites of arachidonic acid (icosa-5,8,11,14-tetraenoic acid) containing a terminal carboxy function and four or more double bonds (three or more of which are conjugated) as well as other functional groups.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukotriene transport","termid":"GO:0071716"},{"relation_name":"is_a","term_name":"sodium-independent icosanoid transport","termid":"GO:0071718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"sodium-independent leukotriene transport","termid":"GO:0071719"}


id: PBO:0085770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase with similarity to mammalian PDK1 and yeast Pkh1p/Phk2p; yeast Pkh1p and Pkh2p are two redundant upstream activators of Pkc1p; identified as a multicopy suppressor of a pkh1 pkh2 double mutant","termid":"PBO:0085770"}


id: PBO:0046019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2 alpha kinase 4","termid":"PBO:0046019"}


id: GO:0048765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a root hair cell.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"root epidermal cell differentiation","termid":"GO:0010053"},{"relation_name":"is_a","term_name":"trichoblast maturation","termid":"GO:0048764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root hair cell differentiation","termid":"GO:0048765"}


id: GO:0048667
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structures of a neuron are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a neuron.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"part_of","term_name":"neuron development","termid":"GO:0048666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell morphogenesis involved in neuron differentiation","synonyms":[{"name":"neuron morphogenesis involved in differentiation","type":"exact"}],"termid":"GO:0048667"}


id: MONDO:0019069
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rhabdoid tumor (obsolete MONDO:0019069)","termid":"MONDO:0019069","xrefs":{"Monarch":{"xref_id":"0019069"}}}


id: PBO:0084127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hexaprenyl pyrophosphate synthetase; catalyzes the first step in ubiquinone (coenzyme Q) biosynthesis","termid":"PBO:0084127"}


id: GO:1903531
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of secretion by cell.","definition_xrefs":["GOC:pm","GOC:TermGenie","PMID:12130530","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of secretion","termid":"GO:0051048"},{"relation_name":"is_a","term_name":"regulation of secretion by cell","termid":"GO:1903530"},{"relation_name":"negatively_regulates","term_name":"secretion by cell","termid":"GO:0032940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of secretion by cell","synonyms":[{"name":"down regulation of cellular secretion","type":"exact"},{"name":"down regulation of secretion by cell","type":"exact"},{"name":"down-regulation of cellular secretion","type":"exact"},{"name":"down-regulation of secretion by cell","type":"exact"},{"name":"downregulation of cellular secretion","type":"exact"},{"name":"downregulation of secretion by cell","type":"exact"},{"name":"inhibition of cellular secretion","type":"narrow"},{"name":"inhibition of secretion by cell","type":"narrow"},{"name":"negative regulation of cellular secretion","type":"exact"}],"termid":"GO:1903531"}


id: PBO:0052244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KCTD13 divergent transcript","termid":"PBO:0052244"}


id: PBO:0081899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 850","termid":"PBO:0081899"}


id: GO:0030588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Partial constriction of the cytoplasm of a cell to form a furrow that resembles a cleavage furrow but does not complete cytokinesis.","definition_xrefs":["PMID:7729583","GOC:mah","PMID:10751167","PMID:30990821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"embryo development","termid":"GO:0009790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pseudocleavage","termid":"GO:0030588"}


id: PBO:0088022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1 snRNP protein involved in splicing; contains multiple tetriatricopeptide repeats","termid":"PBO:0088022"}


id: MONDO:0021761
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An erythrocytic disorder that is characterized by macrocytosis and megaloblastic changes of the bone marrow cells, with additional morphological defects of hands and feet.","definition_xrefs":["PMID:7641772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acral dysostosis dyserythropoiesis syndrome","termid":"MONDO:0021761","xrefs":{"Monarch":{"xref_id":"0021761"}}}


id: GO:0034655
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