# terms

id: PBO:0056562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minichromosome maintenance 9 homologous recombination repair factor","termid":"PBO:0056562"}


id: GO:0061465
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The part of the plasma membrane that contributes to the structure of a hemidesmosome.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete plasma membrane part of hemidesmosome (obsolete GO:0061465)","termid":"GO:0061465"}


id: PBO:0084694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial DNA polymerase gamma; single subunit of mitochondrial DNA polymerase in yeast, in contrast to metazoan complex of catalytic and accessory subunits; polymorphic in yeast, petites occur more frequently in some lab strains; human ortholog POLG complements yeast mip1 mutant; mutations in human POLG associated with Alpers-Huttenlocher syndrome (AHS), progressive external ophthalmoplegia (PEO), parkinsonism, other mitochondrial diseases","termid":"PBO:0084694"}


id: PBO:0067360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 459, pseudogene","termid":"PBO:0067360"}


id: FYPO:0002513
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the palmitoylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during one or both meiotic nuclear divisions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein palmitoylation","termid":"FYPO:0002509"},{"relation_name":"is_a","term_name":"abnormal protein palmitoylation during meiosis","termid":"FYPO:0002514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"increased protein palmitoylation during meiosis","synonyms":[{"name":"increased protein palmitoylation during meiotic nuclear division","type":"exact"}],"termid":"FYPO:0002513"}


id: GO:0030426
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The migrating motile tip of a growing neuron projection, where actin accumulates, and the actin cytoskeleton is the most dynamic.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:10082468","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"site of polarized growth","termid":"GO:0030427"},{"relation_name":"part_of","term_name":"distal axon","termid":"GO:0150034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"growth cone","secondary_identifiers":["Wikipedia:Growth_cone"],"termid":"GO:0030426"}


id: GO:0031912
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Complex basket- or funnel-like structure used by the cell to collect food and channel it to the cytostome; includes specialized sub-structures made up of closely-spaced cilia and underlying basal bodies and fibrillar systems.","definition_xrefs":["PMID:10503189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"oral apparatus","termid":"GO:0031912"}


id: SO:0002361
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that codes for cytosolic LSU rRNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"cytosolic_rRNA_gene","termid":"SO:0002360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_LSU_rRNA_gene","synonyms":[{"name":"cytosolic large subunit rRNA gene","type":"exact"}],"termid":"SO:0002361"}


id: GO:1901702
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of salt from one side of a membrane to the other.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"salt transmembrane transporter activity","termid":"GO:1901702"}


id: GO:0043059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the speed, mechanical force, or rhythm of the anterior movement of an organism.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of locomotion","termid":"GO:0040012"},{"relation_name":"regulates","term_name":"forward locomotion","termid":"GO:0043056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of forward locomotion","termid":"GO:0043059"}


id: GO:0071987
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a WD40 repeat domain of a protein. The WD40 repeat is a short structural motif of approximately 40 amino acids, often terminating in a tryptophan-aspartic acid (W-D) dipeptide. Several of these repeats are combined to form a type of protein domain called the WD domain.","definition_xrefs":["GOC:yaf","InterPro:IPR017986"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"WD40-repeat domain binding","synonyms":[{"name":"WD domain binding","type":"exact"},{"name":"beta-transducin repeat domain binding","type":"exact"}],"termid":"GO:0071987"}


id: PBO:0082852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coproporphyrinogen III oxidase; oxygen-requiring enzyme that catalyzes sixth step in heme biosynthetic pathway; transcription is repressed by oxygen and heme (via Rox1p and Hap1p); human homolog CPOX can complement yeast mutant and allow growth of haploid null after sporulation of a heterozygous diploid","termid":"PBO:0082852"}


id: MONDO:0044684
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete tuberculous meningitis (obsolete MONDO:0044684)","termid":"MONDO:0044684","xrefs":{"Monarch":{"xref_id":"0044684"}}}


id: PBO:0061733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoredoxin","termid":"PBO:0061733"}


id: GO:0061845
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The location where a secondary projection arises from a neuron projection.","definition_xrefs":["PMID:25586189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"neuron projection","termid":"GO:0043005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"neuron projection branch point","termid":"GO:0061845"}


id: PR:Q09912
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- psi1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09912"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein psi1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC830.07c","synonyms":[{"name":"Spom972h-psi1","type":"exact"},{"name":"protein psi (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09912"}


id: PBO:0043883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cellular repressor of E1A stimulated genes 2","termid":"PBO:0043883"}


id: PBO:0060840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurofilament heavy pseudogene 1","termid":"PBO:0060840"}


id: PBO:0001482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoadenosine phosphosulfate reductase","termid":"PBO:0001482"}


id: PBO:0090576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM23 translocase complex subunit Tim23","termid":"PBO:0090576"}


id: PBO:0049382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIIC subunit 4","termid":"PBO:0049382"}


id: PBO:0069677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 954, pseudogene","termid":"PBO:0069677"}


id: PBO:0065499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"psoriasis susceptibility 1 candidate 1","termid":"PBO:0065499"}


id: PATO:0002220
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group.","definition_xrefs":["wikipedia:en.wikipedia.org/wiki/Phosphorylated"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylation","termid":"PATO:0002262"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylated","termid":"PATO:0002220"}


id: MONDO:1011862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tremor syndrome with central axonopathy, non-human animal","secondary_identifiers":["OMIA:001017"],"termid":"MONDO:1011862","xrefs":{"Monarch":{"xref_id":"1011862"}}}


id: PBO:0083949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; Ost3p is important for N-glycosylation of a subset of proteins including modification of Pmt2p at N131 and N403","termid":"PBO:0083949"}


id: GO:0034524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-hydroxyisophthalic acid = salicylate + CO2.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-hydroxyisophthalate decarboxylase activity (obsolete GO:0034524)","termid":"GO:0034524"}


id: MONDO:0002450
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Focal benign glandular hyperplasia in the prostate gland.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenoma","termid":"MONDO:0004972"},{"relation_name":"is_a","term_name":"benign neoplasm of prostate","termid":"MONDO:0021510"},{"relation_name":"is_a","term_name":"benign epithelial neoplasm","termid":"MONDO:0036976"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostatic adenoma","secondary_identifiers":["ICD9:600.20","NCIT:C4795","DOID:2883","MEDGEN:105447","MESH:D011470","UMLS:C0520477","SCTID:21173002","SCTID:266569009"],"synonyms":[{"name":"adenoma - prostate","type":"exact"},{"name":"adenoma of prostate","type":"exact"},{"name":"adenoma of the prostate","type":"exact"},{"name":"benign adenoma of prostate","type":"exact"},{"name":"prostate adenoma","type":"exact"},{"name":"prostate gland adenoma","type":"exact"}],"termid":"MONDO:0002450","xrefs":{"Monarch":{"xref_id":"0002450"}}}


id: GO:0060375
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of mast cell differentiation, the process in which a relatively unspecialized myeloid precursor cell acquires the specialized features of a mast cell. A mast cell is a cell that is found in almost all tissues containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myeloid leukocyte differentiation","termid":"GO:0002761"},{"relation_name":"regulates","term_name":"mast cell differentiation","termid":"GO:0060374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mast cell differentiation","termid":"GO:0060375"}


id: PBO:0113191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Major ADP/ATP carrier of the mitochondrial inner membrane; exchanges cytosolic ADP for mitochondrially synthesized ATP; also imports heme and ATP; also functions in peroxisomes; required for viability in many lab strains that carry a sal1 mutation; PET9 has a paralog, AAC3, that arose from the whole genome duplication; human homolog SLC25A4 implicated in progressive external ophthalmoplegia can complement yeast null mutant","termid":"PBO:0113191"}


id: GO:0003320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The inward folding of myocardial tissue derived from the right half of the heart rudiment that will form the future ventral part of the heart tube.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelial fold involved in embryonic heart tube formation","termid":"GO:0003152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"heart rudiment involution","termid":"GO:0003320"}


id: MONDO:0011797
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infantile-onset ascending hereditary spastic paralysis (IAHSP) is a very rare motor neuron disease characterized by severe spasticity of the lower limbs in early life, progression of spasticity to the upper limbs in late childhood, and dysarthria.","definition_xrefs":["Orphanet:293168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ALS2-related motor neuron disease","termid":"MONDO:0100227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"infantile-onset ascending hereditary spastic paralysis","secondary_identifiers":["GARD:4914","OMIM:607225","ICD9:343.8","SCTID:703543005","UMLS:C2931441","MESH:C537217","MEDGEN:419413"],"synonyms":[{"name":"IAHSP","type":"exact"},{"name":"spastic paralysis, infantile onset ascending","type":"related"},{"name":"spastic paralysis, infantile-onset ascending","type":"related"}],"termid":"MONDO:0011797","xrefs":{"Monarch":{"xref_id":"0011797"}}}


id: MONDO:0005322
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fractures of the larger bone of the forearm.","definition_xrefs":["MESH:D014458"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone fracture","termid":"MONDO:0005315"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ulna fracture","secondary_identifiers":["SCTID:54556006","EFO:0003950"],"synonyms":[{"name":"bone fracture of ulna","type":"exact"},{"name":"ulna bone fracture","type":"exact"}],"termid":"MONDO:0005322","xrefs":{"Monarch":{"xref_id":"0005322"}}}


id: FYPO:0007926
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a combination of calcofluor and potassium chloride. Cells stop growing (and may die) at concentrations of calcofluor and potassium chloride that allow wild type cells to grow.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002683","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to calcofluor and potassium chloride","synonyms":[{"name":"sensitive to calcofluor and potassium chloride during vegetative growth","type":"exact"}],"termid":"FYPO:0007926"}


id: GO:0047056
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-tetrahydrocolumbamine + [reduced NADPH--hemoprotein reductase] + O2 -> (S)-canadine + [oxidized NADPH--hemoprotein reductase] + 2 H2O.","definition_xrefs":["RHEA:21456"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"(S)-canadine synthase activity","secondary_identifiers":["EC:1.14.19.68","KEGG_REACTION:R04400","MetaCyc:1.1.3.36-RXN"],"synonyms":[{"name":"(S)-tetrahydroberberine synthase activity","type":"related"},{"name":"(S)-tetrahydrocolumbamine oxidase (methylenedioxy-bridge-forming) activity","type":"related"}],"termid":"GO:0047056"}


id: GO:0048848
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the neurohypophysis are generated and organized. The neurohypophysis is the part of the pituitary gland that secretes hormones involved in blood pressure regulation.","definition_xrefs":["GOC:dph","GOC:jid","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland morphogenesis","termid":"GO:0022612"},{"relation_name":"part_of","term_name":"neurohypophysis development","termid":"GO:0021985"},{"relation_name":"part_of","term_name":"hypophysis morphogenesis","termid":"GO:0048850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neurohypophysis morphogenesis","synonyms":[{"name":"neurophysis morphogenesis","type":"exact"},{"name":"posterior pituitary gland morphogenesis","type":"exact"},{"name":"posterior pituitary morphogenesis","type":"exact"}],"termid":"GO:0048848"}


id: GO:0000219
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete vacuolar hydrogen-transporting ATPase (obsolete GO:0000219)","synonyms":[{"name":"V-ATPase","type":"exact"},{"name":"vacuolar hydrogen-transporting ATPase","type":"exact"}],"termid":"GO:0000219"}


id: PBO:0028821
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_sporulation_resulting_in_formation_of_ascus_with_fewer_than_four_spores","termid":"PBO:0028821"}


id: PBO:0067720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 18","termid":"PBO:0067720"}


id: PBO:0070514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 13","termid":"PBO:0070514"}


id: FYPO:0007459
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the portion of the nuclear envelope enclosing the mitotic nuclear bridge is abnormal. The nuclear bridge is a narrow constricted region of the nucleus that forms around the mitotic spindle during anaphase.","definition_xrefs":["PMID:32848252","GO:0140510","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear envelope morphology during mitosis","termid":"FYPO:0003779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002403"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0002403","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology at mitotic nuclear bridge","synonyms":[{"name":"abnormal nuclear envelope morphology at mitotic nuclear bridge during mitotic cell cycle","type":"related"},{"name":"abnormal nuclear envelope morphology at mitotic nuclear bridge during vegetative growth","type":"exact"}],"termid":"FYPO:0007459"}


id: PBO:0042567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase inhibitor 1C","termid":"PBO:0042567"}


id: PBO:0049137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein signaling modulator 1","termid":"PBO:0049137"}


id: GO:0062077
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of catalysing the reaction: phenylacetyl-CoA + H+ + NADPH + O2 = 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA + H2O + NADP+.","definition_xrefs":["PMID:21247899","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"phenylacetyl-CoA 1,2-epoxidase complex","synonyms":[{"name":"paaABCE complex","type":"narrow"}],"termid":"GO:0062077"}


id: PBO:0000998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"steroid reductase (predicted)","termid":"PBO:0000998"}


id: PBO:0017072
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein","termid":"PBO:0017072"}


id: GO:0043834
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: Co(I)-[trimethylamine-specific corrinoid protein] + H+ + trimethylamine = dimethylamine + methyl-Co(III)-[trimethylamine-specific corrinoid protein].","definition_xrefs":["PMID:9006042","RHEA:39287"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016741","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"trimethylamine methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8102","EC:2.1.1.250"],"synonyms":[{"name":"MT1","type":"broad"},{"name":"TMA methyltransferase 1","type":"exact"},{"name":"mttB1","type":"related"},{"name":"trimethylamine-specific methylcobalamin:coenzyme M methyltransferase activity","type":"narrow"},{"name":"trimethylamine:corrinoid methyltransferase activity","type":"exact"}],"termid":"GO:0043834"}


id: GO:0030909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The post-translational removal of peptide sequences from within a protein sequence, by a process not involving inteins.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein splicing","termid":"GO:0030908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"non-intein-mediated protein splicing","termid":"GO:0030909"}


id: GO:0072075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of a metanephric mesenchyme from an initial condition to its mature state. This process begins with the formation of metanephric mesenchyme and ends with the mature structure. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney mesenchyme development","termid":"GO:0072074"},{"relation_name":"part_of","term_name":"metanephros development","termid":"GO:0001656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric mesenchyme development","termid":"GO:0072075"}


id: PR:O59782
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An anion exchange transporter that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04211"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfate permease C320.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC320.05","secondary_identifiers":["UniProtKB:O59782"],"synonyms":[{"name":"Spom972h-SLC26A7","type":"exact"}],"termid":"PR:O59782"}


id: MONDO:0013198
data:
  {"annotated_genes":["SJAG_02431","SJAG_03703"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85949,85950],"is_not":false,"summary":null,"term":"MONDO:0013198"}]},"cv_name":"mondo","definition":"Any familial isolated dilated cardiomyopathy in which the cause of the disease is a mutation in the MYH6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02431":null,"SJAG_03703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"dilated cardiomyopathy 1EE","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0110453","MEDGEN:412965","GARD:15639","UMLS:C2750466","MESH:C567683","OMIM:613252"],"synonyms":[{"name":"CMD1EE","type":"exact"},{"name":"MYH6 familial isolated dilated cardiomyopathy","type":"exact"},{"name":"cardiomyopathy, dilated, 1EE","type":"related"},{"name":"cardiomyopathy, dilated, type 1Ee","type":"exact"},{"name":"dilated cardiomyopathy type 1EE","type":"exact"},{"name":"familial isolated dilated cardiomyopathy caused by mutation in MYH6","type":"exact"}],"termid":"MONDO:0013198","terms_by_termid":{"MONDO:0013198":null},"xrefs":{"Monarch":{"xref_id":"0013198"}}}


id: GO:0005774
data:
  {"annotated_genes":["SJAG_01471","SJAG_03447","SJAG_01983","SJAG_02656","SJAG_00732","SJAG_03406","SJAG_01990","SJAG_03009","SJAG_04232","SJAG_02665","SJAG_00204","SJAG_03072","SJAG_01320","SJAG_02344","SJAG_00877","SJAG_03250","SJAG_01783","SJAG_03656","SJAG_04502","SJAG_01571","SJAG_01027","SJAG_02699","SJAG_01817","SJAG_01145","SJAG_01509","SJAG_03355","SJAG_03405","SJAG_03400","SJAG_03089","SJAG_02723","SJAG_01619","SJAG_03928","SJAG_04963","SJAG_01184","SJAG_02782","SJAG_03371","SJAG_03313","SJAG_01447","SJAG_04955","SJAG_02565","SJAG_03899","SJAG_04966","SJAG_04023","SJAG_02902","SJAG_00771","SJAG_05184","SJAG_03848","SJAG_04496","SJAG_03667","SJAG_03401","SJAG_02289","SJAG_03450","SJAG_05210","SJAG_00688","SJAG_01400","SJAG_01803","SJAG_00136","SJAG_00824","SJAG_05294","SJAG_01598","SJAG_00516","SJAG_04616","SJAG_02578","SJAG_03725","SJAG_01236","SJAG_04698","SJAG_03511","SJAG_01941","SJAG_01913","SJAG_04471","SJAG_01344","SJAG_00380","SJAG_02603","SJAG_00638","SJAG_02433","SJAG_02716","SJAG_03137","SJAG_00570","SJAG_00561","SJAG_03403","SJAG_00209","SJAG_04506","SJAG_01991","SJAG_03909","SJAG_01795","SJAG_03138","SJAG_03987","SJAG_01112","SJAG_04725","SJAG_02117","SJAG_03895","SJAG_03256","SJAG_02023","SJAG_03962","SJAG_00212","SJAG_01324","SJAG_02356","SJAG_01397","SJAG_04028","SJAG_02424","SJAG_07012","SJAG_00299","SJAG_03100","SJAG_01078","SJAG_00821","SJAG_04015","SJAG_03005","SJAG_05194","SJAG_06309","SJAG_02029","SJAG_00029","SJAG_02414","SJAG_01505","SJAG_01772","SJAG_01080","SJAG_01032","SJAG_01319","SJAG_03497","SJAG_04910","SJAG_04975","SJAG_01036","SJAG_00051","SJAG_00457","SJAG_04867","SJAG_02853","SJAG_01299","SJAG_03960","SJAG_02765","SJAG_04643","SJAG_02103","SJAG_03442","SJAG_02231","SJAG_00534"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87495,87786,88895,93657,95585,97498,97826,99071,100945,102509,105189,106137,106637,106887,109297,109755,110445,112354],"is_not":false,"summary":null,"term":"GO:0005774"},{"annotations":[113134,89555],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000421"},{"annotations":[93248,97111,113138,97535,115058,93010,98363,109753,88577,94108,117046,95621,107763,109517,111277,102935,113050,99508,92372,95136,116516,103408,88624,87509,95251,95898,91597,96097,87204,98323,94076,108913,99439,112057,104390,93537,89872,106781,103085,108863,109748,93247,113832,114007,87491,90981,106162,93512,108750,100942,112910,101125,88611,88563,114368,116045,116115,89695,104621,107335,117308,93374,92456,112727,116749,117105,117858,99744,118222,93798,99722,104461,96538,106681,88542,108167,109480,115692,95468,95384,105202,106885,103294,109841,108777,116878,98197,109363,91534,101468,98051,117698,96181,109886,103330,89636,113825,99472,106169,89319,102299,88788,99774,93193,96848,97854,95510,98099],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000329"},{"annotations":[113052,106782,87205,109481],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070772"},{"annotations":[107336,93538,104623,92373],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071986"},{"annotations":[117925,104132,99745,93800,99805,89655,89192,100613],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902500"},{"annotations":[89637,103409,95318,91535,89320,95137,99440],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000220"},{"annotations":[109365,96098,118223,99509,98414,87510,101134,102171],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000221"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bounding membrane of 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membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005774","terms_by_termid":{"GO:0000220":null,"GO:0000221":null,"GO:0000329":null,"GO:0000421":null,"GO:0005774":null,"GO:0070772":null,"GO:0071986":null,"GO:1902500":null}}


id: PBO:0080948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger BED-type containing 3","termid":"PBO:0080948"}


id: PBO:0077303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 42","termid":"PBO:0077303"}


id: PBO:0058885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 10522","termid":"PBO:0058885"}


id: PBO:0034329
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_prototype","termid":"PBO:0034329"}


id: FYECO:0000117
data:
  {"alleles_by_uniquename":{"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"}},"annotation_feature_type":"gene","cv_annotations":{"fission_yeast_phenotype_condition":[{"annotations":[119081],"is_not":false,"summary":null,"term":"FYECO:0000117"}]},"cv_name":"fission_yeast_phenotype_condition","definition":"Cells are initially grown at a normal growth temperature. This is followed by a heat shock where the temperature is increased to a very high temperature followed by recovery at the initial temperature.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping heat shock","termid":"FYECO:0000116"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02527":null},"genotype_count":1,"genotypes_by_uniquename":{"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown":{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]}},"is_obsolete":false,"name":"heat shock and recovery at normal temperature","references_by_uniquename":{"PMID:37233261":null},"single_locus_annotated_genes":["SJAG_02527"],"single_locus_genotype_uniquenames":["lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown"],"synonyms":[{"name":"heat shock for 20-30 min at 48 degrees C, preceeded and followed by growth at normal temperature","type":"narrow"}],"termid":"FYECO:0000117","terms_by_termid":{"FYECO:0000117":null}}


id: MONDO:0958239
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"microphthalmia, isolated, with coloboma","termid":"MONDO:0000170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"microphthalmia/coloboma 11","secondary_identifiers":["OMIM:620731"],"termid":"MONDO:0958239","xrefs":{"Monarch":{"xref_id":"0958239"}}}


id: PBO:0074082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 53","termid":"PBO:0074082"}


id: MONDO:1012012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"aniridia with cataract, non-human animal","termid":"MONDO:1011974"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aniridia with cataract, horse","secondary_identifiers":["OMIA:000045-9796"],"termid":"MONDO:1012012","xrefs":{"Monarch":{"xref_id":"1012012"}}}


id: GO:0060957
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of a cell to an endocardial cell fate and its capacity to differentiate into an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial cell fate commitment","termid":"GO:0060839"},{"relation_name":"is_a","term_name":"cardiac cell fate commitment","termid":"GO:0060911"},{"relation_name":"part_of","term_name":"endocardial cell differentiation","termid":"GO:0060956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endocardial cell fate commitment","termid":"GO:0060957"}


id: PBO:0085284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal NADP-dependent isocitrate dehydrogenase; catalyzes oxidation of isocitrate to alpha-ketoglutarate with the formation of NADP(H+), required for growth on unsaturated fatty acids; IDP3 has a paralog, IDP2, that arose from the whole genome duplication","termid":"PBO:0085284"}


id: MOD:00499
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["PubMed:3578767","Unimod:128#C","PubMed:3311742"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"5-iodoacetamidofluorescein","synonyms":[{"name":"5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR)","type":"related"},{"name":"Fluorescein","type":"related"}],"termid":"MOD:00499"}


id: PBO:0074198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 39 member 8","termid":"PBO:0074198"}


id: PBO:0087902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor; required for flocculation, diploid filamentous growth, and haploid invasive growth; forms a heterodimer with Mss11p that interacts with the Swi/Snf complex during transcriptional activation of FLO1, FLO11, and STA1; S. cerevisiae genome reference strain S288C contains an internal in-frame stop at codon 142, which in other strains encodes tryptophan","termid":"PBO:0087902"}


id: GO:0052395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The activation by an organism of the production of nitric oxide as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by organism of defense-related symbiont nitric oxide production (obsolete GO:0052395)","synonyms":[{"name":"activation by organism of defense-related symbiont NO production","type":"exact"},{"name":"activation by organism of defense-related symbiont nitric acid production","type":"exact"},{"name":"induction by organism of defense-related symbiont NO production","type":"exact"},{"name":"induction by organism of defense-related symbiont nitric oxide production","type":"exact"}],"termid":"GO:0052395"}


id: MONDO:1010995
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spinal muscular atrophy that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spinal muscular atrophy, non-human animal","termid":"MONDO:1010235"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spinal muscular atrophy, dog","secondary_identifiers":["OMIA:000939-9615"],"termid":"MONDO:1010995","xrefs":{"Monarch":{"xref_id":"1010995"}}}


id: GO:1904444
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of establishment of Sertoli cell barrier.","definition_xrefs":["PMID:18057314","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell development","termid":"GO:0060284"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"establishment of Sertoli cell barrier","termid":"GO:0097368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of establishment of Sertoli cell barrier","synonyms":[{"name":"regulation of establishment of BTB","type":"exact"},{"name":"regulation of establishment of SCB","type":"exact"},{"name":"regulation of establishment of blood-testis barrier","type":"exact"}],"termid":"GO:1904444"}


id: MOD:00896
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct with a compound containing a riboflavin phosphate (flavin mononucleotide, FMN) group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavin modified residue","termid":"MOD:00697"},{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FMN modified residue","termid":"MOD:00896"}


id: GO:0051731
data:
  {"annotated_genes":["SJAG_00956","SJAG_03789","SJAG_01791","SJAG_01979","SJAG_02680"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[118058],"is_not":false,"summary":null,"term":"GO:0051731"},{"annotations":[87605,93187],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046404"},{"annotations":[92949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051736"},{"annotations":[90128],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051730"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NTP + 5'-dephosphopolynucleotide = NDP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"nucleobase-containing compound kinase activity","termid":"GO:0019205"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00956":null,"SJAG_01791":null,"SJAG_01979":null,"SJAG_02680":null,"SJAG_03789":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016301"],"is_obsolete":false,"name":"polynucleotide 5'-hydroxyl-kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"5'-dephosphopolynucleotide kinase activity","type":"exact"},{"name":"5'-hydroxyl polynucleotide kinase activity","type":"exact"},{"name":"PNK","type":"related"},{"name":"polynucleotide 5'-hydroxy-kinase activity","type":"exact"},{"name":"polynucleotide 5'-hydroxyl kinase (phosphorylating) activity","type":"exact"},{"name":"polynucleotide kinase activity","type":"broad"}],"termid":"GO:0051731","terms_by_termid":{"GO:0046404":null,"GO:0051730":null,"GO:0051731":null,"GO:0051736":null}}


id: GO:0052308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that involves recognition of a pathogen-associated molecular pattern, and by which an organism modulates the frequency, rate or extent of the innate immune response, the first line of defense against infection, of a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete pathogen-associated molecular pattern dependent modulation by organism of innate immune response in other organism involved in symbiotic interaction (obsolete GO:0052308)","synonyms":[{"name":"pathogen-associated molecular pattern dependent modulation by organism of innate immunity in other organism during symbiotic interaction","type":"related"},{"name":"pathogen-associated molecular pattern dependent modulation by organism of innate immunity in other organism involved in symbiotic interaction","type":"exact"}],"termid":"GO:0052308"}


id: GO:0052503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the symbiont calcium-dependent protein kinase pathway during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of defense-related symbiont calcium-dependent protein kinase pathway (obsolete GO:0052503)","synonyms":[{"name":"positive regulation by organism of defense-related symbiont calcium-dependent protein kinase pathway","type":"exact"},{"name":"positive regulation of defense-related symbiont CDPK pathway by organism","type":"exact"}],"termid":"GO:0052503"}


id: PBO:0050981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intraflagellar transport 43","termid":"PBO:0050981"}


id: PBO:0012593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor, zf-fungal binuclear cluster type Gsf1","termid":"PBO:0012593"}


id: PBO:0089625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex/transcription factor TFIID complex subunit A Taf12","termid":"PBO:0089625"}


id: PBO:0073648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"salt inducible kinase 2","termid":"PBO:0073648"}


id: PBO:0035769
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_magnesium_level","termid":"PBO:0035769"}


id: MONDO:0054764
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neurodegeneration with brain iron accumulation","termid":"MONDO:0018307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"neurodegeneration with brain iron accumulation 8","secondary_identifiers":["UMLS:C4693587","MEDGEN:1645224","OMIM:617917"],"synonyms":[{"name":"NBIA8","type":"related"},{"name":"neurodegeneration with brain iron accumulation 8","type":"exact"}],"termid":"MONDO:0054764","xrefs":{"Monarch":{"xref_id":"0054764"}}}


id: PBO:0111719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane protein involved in translation Mdm38","termid":"PBO:0111719"}


id: PBO:0053247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM homeobox 2","termid":"PBO:0053247"}


id: PBO:0000154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinic acid plasma membrane transporter (predicted)","termid":"PBO:0000154"}


id: PBO:0070430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome production factor 2 homolog","termid":"PBO:0070430"}


id: PBO:0041902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBFA2/RUNX1 partner transcriptional co-repressor 2","termid":"PBO:0041902"}


id: PBO:0089391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation regulator, HEAT repeat protein Gcn1","termid":"PBO:0089391"}


id: GO:0050380
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: di-trans,octa-cis-undecaprenyl diphosphate + H2O = di-trans,octa-cis-undecaprenyl phosphate + H+ + phosphate.","definition_xrefs":["RHEA:28094","PMID:18411271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"undecaprenyl-diphosphatase activity","secondary_identifiers":["MetaCyc:UNDECAPRENYL-DIPHOSPHATASE-RXN","KEGG_REACTION:R05627","EC:3.6.1.27"],"synonyms":[{"name":"C(55)-isoprenyl diphosphatase activity","type":"related"},{"name":"C(55)-isoprenyl pyrophosphatase activity","type":"related"},{"name":"C55-isoprenyl diphosphatase activity","type":"related"},{"name":"C55-isoprenyl pyrophosphatase activity","type":"related"},{"name":"isoprenyl pyrophosphatase activity","type":"related"},{"name":"undecaprenyl-diphosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0050380"}


id: PBO:0001948
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.2.1.106","termid":"PBO:0001948"}


id: PBO:0057814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3135a","termid":"PBO:0057814"}


id: MONDO:0971004
data:
  {"annotated_genes":["SJAG_04300"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86703],"is_not":false,"summary":null,"term":"MONDO:0971004"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial amyloid neuropathy","termid":"MONDO:0007100"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04300":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0021179"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0021179","MONDO:0005244"],"is_obsolete":false,"name":"amyloidosis, hereditary systemic 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:105210","MEDGEN:414031","UMLS:C2751492"],"termid":"MONDO:0971004","terms_by_termid":{"MONDO:0971004":null},"xrefs":{"Monarch":{"xref_id":"0971004"}}}


id: PBO:0027049
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_ionizing_radiation_during_mitotic_G1_phase","termid":"PBO:0027049"}


id: GO:0004687
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + myosin-light-chain = ADP + myosin-light-chain phosphate.","definition_xrefs":["EC:2.7.11.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004672"}],"interesting_parent_ids":["GO:0016301","GO:0003824","GO:0003674","GO:0016740","GO:0140096","GO:0004672"],"is_obsolete":false,"name":"myosin light chain kinase activity","secondary_identifiers":["Reactome:R-HSA-445813","MetaCyc:2.7.11.18-RXN","Reactome:R-HSA-5668978","RHEA:22004"],"synonyms":[{"name":"ATP:myosin-light-chain O-phosphotransferase","type":"broad"},{"name":"ATP:myosin-light-chain O-phosphotransferase activity","type":"related"},{"name":"MLCK","type":"related"},{"name":"MLCkase activity","type":"related"},{"name":"STK18","type":"related"},{"name":"calcium/calmodulin-dependent myosin light chain kinase activity","type":"related"},{"name":"myosin kinase activity","type":"related"},{"name":"myosin light chain protein kinase activity","type":"related"},{"name":"myosin light-chain kinase","type":"broad"},{"name":"myosin light-chain kinase (phosphorylating)","type":"related"},{"name":"myosin light-chain kinase (phosphorylating) activity","type":"related"},{"name":"myosin light-chain kinase activity","type":"related"},{"name":"myosin-light-chain kinase activity","type":"exact"},{"name":"smooth-muscle-myosin-light-chain kinase activity","type":"narrow"}],"termid":"GO:0004687"}


id: PBO:0053429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 374","termid":"PBO:0053429"}


id: GO:0022021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of caudal ganglionic eminence cells, resulting in the expansion of a cell population.","definition_xrefs":["GOC:jid","GO_REF:0000021","GOC:cls","GOC:dph","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subpallium cell proliferation in forebrain","termid":"GO:0022012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"caudal ganglionic eminence cell proliferation","termid":"GO:0022021"}


id: PBO:0076167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfotransferase family 1A member 3","termid":"PBO:0076167"}


id: MONDO:0016777
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inhalational botulism is a man-made form of botulism, a rare acquired neuromuscular junction disease with descending flaccid paralysis caused by botulinum neurotoxins (BoNTs).","definition_xrefs":["Orphanet:254504"],"direct_ancestors":[{"relation_name":"is_a","term_name":"botulism","termid":"MONDO:0005498"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inhalational botulism","secondary_identifiers":["GARD:20746","UMLS:C1443900","icd11.foundation:1881625139","MEDGEN:731169","SCTID:409562009"],"synonyms":[{"name":"inhalation botulism","type":"exact"}],"termid":"MONDO:0016777","xrefs":{"Monarch":{"xref_id":"0016777"}}}


id: PBO:0049187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grainyhead like transcription factor 3","termid":"PBO:0049187"}


id: PBO:0111914
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-8 family","termid":"PBO:0111914"}


id: PBO:0078361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon TTC) 6-1","termid":"PBO:0078361"}


id: PBO:0029933
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_level_during_cellular_response_to_salt_stress","termid":"PBO:0029933"}


id: SO:0000679
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A 5' splice site which does not have the sequence \\\"GT\\\".","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"five_prime_cis_splice_site","termid":"SO:0000163"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_canonical_five_prime_splice_site","synonyms":[{"name":"non canonical 5' splice site","type":"exact"},{"name":"non canonical five prime splice site","type":"exact"},{"name":"non-canonical five prime splice site","type":"exact"}],"termid":"SO:0000679"}


id: PBO:0112646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silenced P-specific transcription factor Pc","termid":"PBO:0112646"}


id: PBO:0087216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine transporter of the mitochondrial inner membrane; member of the mitochondrial carrier family; required for biotin biosynthesis and respiratory growth","termid":"PBO:0087216"}


id: PBO:0056524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanocortin 1 receptor","termid":"PBO:0056524"}


id: GO:0071696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of an ectodermal placode over time from its initial formation until its mature state. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ectodermal placode development","termid":"GO:0071696"}


id: MONDO:0020858
data:
  {"annotated_genes":["SJAG_03114"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85841],"is_not":false,"summary":null,"term":"MONDO:0020858"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex deficiency","termid":"MONDO:0000066"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03114":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 5 (ATP synthase) deficiency nuclear type 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:618120","MEDGEN:1648429","GARD:18670","UMLS:C4748269","DOID:0070463"],"synonyms":[{"name":"MC5DN5","type":"exact"},{"name":"MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, NUCLEAR TYPE 5","type":"exact"},{"name":"Mitochondrial Complex 5 (ATP Synthase) Deficiency, ATP5F1D Type","type":"exact"},{"name":"mitochondrial complex v (atp synthase) deficiency","type":"exact"}],"termid":"MONDO:0020858","terms_by_termid":{"MONDO:0020858":null},"xrefs":{"Monarch":{"xref_id":"0020858"}}}


id: FYPO:0000434
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which fermentation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal metabolic process during vegetative growth","termid":"FYPO:0000859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal fermentation","synonyms":[{"name":"fermentative metabolism: normal","type":"related"},{"name":"normal fermentation during mitotic cell cycle","type":"related"},{"name":"normal fermentation during vegetative growth","type":"exact"},{"name":"normal fermentative metabolism","type":"exact"}],"termid":"FYPO:0000434"}


id: PBO:0049609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 12","termid":"PBO:0049609"}


id: GO:0005725
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any of the regions of heterochromatin that form a reproducible set of dense bands scattered along the euchromatic arms in polytene chromosomes.","definition_xrefs":["PMID:14579245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochromatin","termid":"GO:0000792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0005575"],"is_obsolete":false,"name":"intercalary heterochromatin","termid":"GO:0005725"}


id: MONDO:0007318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Alagille (AGS) syndrome is variably characterized by chronic cholestasis due to paucity of intrahepatic bile ducts, peripheral pulmonary artery stenosis, vertebrae segmentation anomalies, characteristic facies, posterior embryotoxon/anterior segment abnormalities, pigmentary retinopathy, and dysplastic kidneys.","definition_xrefs":["Orphanet:52"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"biliary tract disorder","termid":"MONDO:0004868"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335","MONDO:0005328","MONDO:0005267"],"is_obsolete":false,"name":"Alagille syndrome","secondary_identifiers":["ICD9:759.89","MEDGEN:39014","NCIT:C35139","MESH:D016738","DOID:9245","NANDO:1200918","GARD:804","UMLS:C0085280","OMIMPS:118450","icd11.foundation:1249656206","MedDRA:10053870","NANDO:2200931","SCTID:31742004","NANDO:1200919","NORD:748"],"synonyms":[{"name":"Alagille syndrome","type":"exact"},{"name":"Alagille-Watson syndrome","type":"exact"},{"name":"Arteriohepatic dysplasia","type":"exact"},{"name":"Cardiovertebral syndrome","type":"related"},{"name":"Hepatofacioneurocardiovertebral syndrome","type":"related"},{"name":"Watson Alagille syndrome","type":"related"},{"name":"Watson-Miller syndrome","type":"related"},{"name":"hepatic ductular hypoplasia","type":"related"},{"name":"paucity of interlobular bile ducts","type":"related"},{"name":"syndromic bile duct paucity","type":"exact"}],"termid":"MONDO:0007318","xrefs":{"Monarch":{"xref_id":"0007318"}}}


id: FYPO:0002269
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glutamate-ammonia ligase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal glutamate-ammonia ligase activity","termid":"FYPO:0002267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0000707","FYPO:0000654","FYPO:0001985"],"is_obsolete":false,"name":"decreased glutamate-ammonia ligase activity","synonyms":[{"name":"decreased GS activity","type":"exact"},{"name":"decreased glutamine synthetase activity","type":"exact"},{"name":"decreased glutamylhydroxamic synthetase activity","type":"exact"},{"name":"reduced glutamate-ammonia ligase activity","type":"exact"}],"termid":"FYPO:0002269"}


id: MONDO:0012580
data:
  {"annotated_genes":["SJAG_01159"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014206"}]},"cv_name":"mondo","definition":"Congenital pulmonary alveolar proteinosis is a very rare primary interstitial lung disease due to pulmonary surfactant accumulation within the alveolar macrophages and alveoli, characterized by a variable clinical course ranging from an asymptomatic clinical presentation and spontaneous remission, to symptoms such as dyspnea and cough, or to severe respiratory failure.","definition_xrefs":["Orphanet:264675"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pulmonary alveolar proteinosis","termid":"MONDO:0001437"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01159":null},"genotype_count":0,"is_obsolete":false,"name":"hereditary pulmonary alveolar proteinosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2200200","SCTID:707442002","NANDO:1200750","OMIMPS:265120","NANDO:1200746","GARD:4582","MESH:C535832","UMLS:C3711368","MEDGEN:777976"],"synonyms":[{"name":"congenital PAP","type":"exact"},{"name":"congenital pulmonary alveolar proteinosis","type":"exact"},{"name":"hereditary pulmonary alveolar proteinosis","type":"exact"},{"name":"inborn error of pulmonary surfactant metabolism","type":"exact"},{"name":"inborn error of surfactant metabolism","type":"exact"},{"name":"pulmonary alveolar proteinosis, congenital","type":"related"},{"name":"sufactant metabolism dysfunction, pulmonary","type":"related"}],"termid":"MONDO:0012580","terms_by_termid":{"MONDO:0014206":null},"xrefs":{"Monarch":{"xref_id":"0012580"}}}


id: GO:0106016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the inflammatory response to wounding.","definition_xrefs":["PMID:26022821","GOC:rph","GOC:BHF","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of inflammatory response","termid":"GO:0050729"},{"relation_name":"is_a","term_name":"regulation of inflammatory response to wounding","termid":"GO:0106014"},{"relation_name":"is_a","term_name":"positive regulation of response to wounding","termid":"GO:1903036"},{"relation_name":"positively_regulates","term_name":"inflammatory response to wounding","termid":"GO:0090594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of inflammatory response to wounding","termid":"GO:0106016"}


id: FYPO:0000199
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A DNA recombination phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of long tract gene conversion is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased gene conversion during vegetative growth","termid":"FYPO:0005788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000293","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased long tract gene conversion","synonyms":[{"name":"DNA recombination defects, long tract gene conversion, increased","type":"exact"},{"name":"increased long tract gene conversion during mitotic cell cycle","type":"related"},{"name":"increased long tract gene conversion during vegetative growth","type":"exact"}],"termid":"FYPO:0000199"}


id: GO:0021789
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a branchiomotor neuron growth cone in the branchial arch mesenchyme is directed to a specific target site in the branchial arch mesenchyme. Branchiomotor neurons are located in the hindbrain and innervate branchial arch-derived muscles that control jaw movements, facial expression, the larynx, and the pharynx.","definition_xrefs":["GOC:dph","PMID:14699587","GO_REF:0000021","GOC:dgh","GOC:cls","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branchiomotor neuron axon guidance","termid":"GO:0021785"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"branchiomotor neuron axon guidance in branchial arch mesenchyme","termid":"GO:0021789"}


id: PBO:0013107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor 3B","termid":"PBO:0013107"}


id: GO:0140831
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(in) + L-asparagine(out) + Na+(out) = H+(out) + L-asparagine(in) + Na+(in).","definition_xrefs":["PMID:10619430","PMID:11742981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-asparagine transmembrane transporter activity","termid":"GO:0015182"},{"relation_name":"is_a","term_name":"sodium:proton antiporter activity","termid":"GO:0015385"},{"relation_name":"is_a","term_name":"amino acid:monoatomic cation antiporter activity","termid":"GO:0140848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"L-asparagine, sodium:proton antiporter activity","secondary_identifiers":["RHEA:71131"],"termid":"GO:0140831"}


id: PBO:0060932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear factor of activated T cells 2 interacting protein","termid":"PBO:0060932"}


id: PBO:0062131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily D member 11","termid":"PBO:0062131"}


id: GO:0070161
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell junction that mechanically attaches a cell (and its cytoskeleton) to neighboring cells or to the extracellular matrix.","definition_xrefs":["ISBN:0815332181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell junction","termid":"GO:0030054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"anchoring junction","synonyms":[{"name":"anchoring cell junction","type":"exact"}],"termid":"GO:0070161"}


id: MONDO:0020049
data:
  {"annotated_genes":["SJAG_01286","SJAG_01806","SJAG_01548","SJAG_03424","SJAG_02231","SJAG_00112"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86272],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011402"},{"annotations":[85210,85209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007925"},{"annotations":[85042],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012574"},{"annotations":[85117],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014848"},{"annotations":[85094],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008684"}]},"cv_name":"mondo","definition":"Chromosomal disorder in which the chromosomal anomaly involves an autosome.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal disorder","termid":"MONDO:0019040"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00112":null,"SJAG_01286":null,"SJAG_01548":null,"SJAG_01806":null,"SJAG_02231":null,"SJAG_03424":null},"genotype_count":0,"is_obsolete":false,"name":"autosomal anomaly","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:98127","UMLS:C5681496","GARD:19417","MEDGEN:1843454"],"synonyms":[{"name":"autosome chromosomal anomaly","type":"exact"},{"name":"chromosomal anomaly of autosome","type":"exact"}],"termid":"MONDO:0020049","terms_by_termid":{"MONDO:0007925":null,"MONDO:0008684":null,"MONDO:0011402":null,"MONDO:0012574":null,"MONDO:0014848":null},"xrefs":{"Monarch":{"xref_id":"0020049"}}}


id: PBO:0036516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr4","termid":"PBO:0036516"}


id: PBO:0041098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain and WD repeat domain containing 1 pseudogene 3","termid":"PBO:0041098"}


id: PBO:0000708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF3h (p40)","termid":"PBO:0000708"}


id: FYPO:0000702
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype that protein affects the binding of one protein to another. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"protein-protein interaction phenotype","synonyms":[{"name":"fission yeast protein binding phenotype","type":"exact"},{"name":"fission yeast protein-protein interaction phenotype","type":"exact"},{"name":"protein binding phenotype","type":"exact"}],"termid":"FYPO:0000702"}


id: GO:0050869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of B cell activation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of B cell activation","termid":"GO:0050864"},{"relation_name":"is_a","term_name":"negative regulation of lymphocyte activation","termid":"GO:0051250"},{"relation_name":"negatively_regulates","term_name":"B cell activation","termid":"GO:0042113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of B cell activation","synonyms":[{"name":"down regulation of B cell activation","type":"exact"},{"name":"down-regulation of B cell activation","type":"exact"},{"name":"downregulation of B cell activation","type":"exact"},{"name":"inhibition of B cell activation","type":"narrow"},{"name":"negative regulation of B lymphocyte activation","type":"exact"},{"name":"negative regulation of B-cell activation","type":"exact"},{"name":"negative regulation of B-lymphocyte activation","type":"exact"}],"termid":"GO:0050869"}


id: PBO:0084352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Late endosomal protein involved in late endosome to vacuole transport; functional homolog of human obesity receptor gene-related protein (OB-RGRP)","termid":"PBO:0084352"}


id: PBO:0084361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Linker nucleoporin component of the nuclear pore complex (NPC); also part of the NPC cytoplasmic filaments; contributes to nucleocytoplasmic transport and NPC biogenesis; forms stable associations with three FG-nucleoporins (Nsp1p, Nup159p, and Nup116p); relocalizes to the cytosol in response to hypoxia","termid":"PBO:0084361"}


id: GO:0048706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure.","definition_xrefs":["GOC:tb","GOC:dsf","GOC:jid","PMID:16049113","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal system development","termid":"GO:0001501"},{"relation_name":"part_of","term_name":"chordate embryonic development","termid":"GO:0043009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic skeletal system development","synonyms":[{"name":"embryonic skeletal development","type":"exact"}],"termid":"GO:0048706"}


id: MOD:00926
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Modification from Unimod Non-standard residue. OBSOLETE because not an amino acid modification. From Unimod not an approved entry.","definition_xrefs":["PubMed:11225353","Unimod:493"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00926 Bisphenol A diglycidyl ether derivative (obsolete MOD:00926)","synonyms":[{"name":"BADGE","type":"related"},{"name":"Bisphenol A diglycidyl ether derivative","type":"related"}],"termid":"MOD:00926"}


id: PBO:0043897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich protein 1 pseudogene 4","termid":"PBO:0043897"}


id: PBO:0017569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diacylglycerol cholinephosphotransferase/ diacylglycerol ethanolaminesphotransferase Ept1 (predicted)","termid":"PBO:0017569"}


id: GO:0035663
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Toll-like 2 protein, a pattern recognition receptor that binds microbial pattern motifs to initiate an innate immune response.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Toll-like receptor binding","termid":"GO:0035325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"Toll-like receptor 2 binding","synonyms":[{"name":"TLR2 binding","type":"exact"}],"termid":"GO:0035663"}


id: SO:1000075
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Sequence variant affects the editing of the transcript.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000075 sequence_variant_affecting_editing (obsolete SO:1000075)","synonyms":[{"name":"mutation affecting editing","type":"related"},{"name":"sequence variant affecting editing","type":"exact"}],"termid":"SO:1000075"}


id: SO:0002193
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The pseudogene has arisen by reverse transcription of a mRNA into cDNA, followed by reintegration into the genome. Therefore, it has lost any intron/exon structure, and it might have a pseudo-polyA-tail.","direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_rRNA","termid":"SO:0000777"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"processed_pseudogenic_rRNA","synonyms":[{"name":"INSDC_feature:rRNA","type":"broad"},{"name":"INSDC_qualifier:processed","type":"exact"},{"name":"processed pseudogenic rRNA","type":"exact"}],"termid":"SO:0002193"}


id: PBO:0040410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V1 subunit H","termid":"PBO:0040410"}


id: GO:0034686
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An integrin complex that comprises one alphav subunit and one beta8 subunit.","definition_xrefs":["PMID:12297042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integrin complex","termid":"GO:0008305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"integrin alphav-beta8 complex","synonyms":[{"name":"ITGAV-ITGB8 complex","type":"narrow"},{"name":"alphav-beta8 integrin complex","type":"exact"}],"termid":"GO:0034686"}


id: GO:0042720
data:
  {"annotated_genes":["SJAG_03648","SJAG_02809"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[107560,108683],"is_not":false,"summary":null,"term":"GO:0042720"}]},"cv_name":"cellular_component","definition":"Protease complex of the mitochondrial inner membrane, consisting of at least two subunits, involved in processing of both nuclear- and mitochondrially-encoded proteins targeted to the intermembrane space.","definition_xrefs":["PMID:12191769","PMID:10821182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner mitochondrial membrane protein complex","termid":"GO:0098800"},{"relation_name":"is_a","term_name":"serine-type endopeptidase complex","termid":"GO:1905370"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02809":null,"SJAG_03648":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005739"}],"interesting_parent_ids":["GO:0005739","GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"mitochondrial inner membrane peptidase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"IMP","type":"narrow"},{"name":"mitochondrion inner membrane peptidase complex","type":"exact"}],"termid":"GO:0042720","terms_by_termid":{"GO:0042720":null}}


id: GO:0046721
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of formic acid, HCOOH, by a cell or a tissue.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formate transport","termid":"GO:0015724"},{"relation_name":"is_a","term_name":"acid secretion","termid":"GO:0046717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"formic acid secretion","synonyms":[{"name":"formate secretion","type":"exact"}],"termid":"GO:0046721"}


id: GO:2000427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of apoptotic cell clearance.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phagocytosis","termid":"GO:0050766"},{"relation_name":"is_a","term_name":"regulation of apoptotic cell clearance","termid":"GO:2000425"},{"relation_name":"positively_regulates","term_name":"apoptotic cell clearance","termid":"GO:0043277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of apoptotic cell clearance","synonyms":[{"name":"positive regulation of apoptotic cell removal","type":"exact"},{"name":"positive regulation of efferocytosis","type":"exact"},{"name":"positive regulation of programmed cell clearance","type":"exact"}],"termid":"GO:2000427"}


id: FYPO:0006667
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed during G0 phase in which the size, shape, or structure of the nucleus is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear morphology","termid":"FYPO:0002256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002403","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nuclear morphology during G0","synonyms":[{"name":"abnormal nuclear morphology during cell quiescence","type":"exact"},{"name":"abnormal nuclear morphology during quiescence","type":"exact"},{"name":"deformed nucleus during G0","type":"exact"},{"name":"nuclear morphology defects during G0","type":"exact"}],"termid":"FYPO:0006667"}


id: GO:0005570
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete small nuclear RNA (obsolete GO:0005570)","synonyms":[{"name":"small nuclear RNA","type":"exact"}],"termid":"GO:0005570"}


id: PBO:0032701
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_nucleus_during_cellular_response_to_hydroxyurea","termid":"PBO:0032701"}


id: FYPO:0005128
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA transcribed from middle meiotic genes measured in a cell is higher than normal (i.e. higher than observed in wild-type cells during vegetative growth). Middle meiotic genes are normally transcribed during meiotic nuclear division.","definition_xrefs":["PomBase:al","PomBase:mah","PMID:17927811"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of meiotic gene mRNA during vegetative growth","termid":"FYPO:0002173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"increased level of middle meiotic gene mRNA during vegetative growth","synonyms":[{"name":"increased level of middle meiosis gene mRNA during vegetative growth","type":"exact"},{"name":"increased level of middle meiotic gene RNA during vegetative growth","type":"exact"},{"name":"increased level of middle meiotic gene mRNA during vegetative growth during mitotic cell cycle","type":"related"},{"name":"increased level of middle meiotic gene transcripts during vegetative growth","type":"exact"}],"termid":"FYPO:0005128"}


id: MONDO:0035683
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete adrenal hypoplasia congenita (obsolete MONDO:0035683)","secondary_identifiers":["Orphanet:595337"],"termid":"MONDO:0035683","xrefs":{"Monarch":{"xref_id":"0035683"}}}


id: GO:0034151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 6 signaling pathway.","definition_xrefs":["PMID:17328678","GOC:add","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pattern recognition receptor signaling pathway","termid":"GO:0062207"},{"relation_name":"regulates","term_name":"toll-like receptor 6 signaling pathway","termid":"GO:0034150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of toll-like receptor 6 signaling pathway","synonyms":[{"name":"regulation of TLR6 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 6 signalling pathway","type":"exact"}],"termid":"GO:0034151"}


id: FYPO:0006297
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the processed 5.8S ribosomal RNA is longer than normal.","definition_xrefs":["PMID:18438419","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985"],"is_obsolete":false,"name":"increased 5.8S rRNA length","synonyms":[{"name":"increased 5.8S ribosomal RNA length","type":"exact"},{"name":"increased length of 5.8S rRNA","type":"exact"}],"termid":"FYPO:0006297"}


id: _global:has_exclusion_reason
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_exclusion_reason","termid":"_global:has_exclusion_reason","xrefs":{"Monarch":{"xref_id":"has_exclusion_reason"}}}


id: PBO:0079403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 6 class V pseudogene 1","termid":"PBO:0079403"}


id: PBO:0055191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2615","termid":"PBO:0055191"}


id: PBO:0059545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Leu (CUN) 2","termid":"PBO:0059545"}


id: MONDO:0010387
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete invasive pneumococcal disease, recurrent isolated, 2 (obsolete MONDO:0010387)","secondary_identifiers":["OMIM:300640"],"termid":"MONDO:0010387","xrefs":{"Monarch":{"xref_id":"0010387"}}}


id: PBO:0006679
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Defective in SREBP Cleavage","termid":"PBO:0006679"}


id: MONDO:0859154
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"popliteal pterygium syndrome","termid":"MONDO:0017435"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bartsocas-Papas syndrome 2","secondary_identifiers":["MEDGEN:1778443","OMIM:619339","GARD:16444","UMLS:C5543445"],"termid":"MONDO:0859154","xrefs":{"Monarch":{"xref_id":"0859154"}}}


id: PBO:0027544
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_latrunculin_A","termid":"PBO:0027544"}


id: MOD:00466
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a residue to a glycosylsphingolipidinositolethanolamidated.","definition_xrefs":["PubMed:12626404","PubMed:18688235","PubMed:8404891"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoconjugated residue","termid":"MOD:00764"},{"relation_name":"is_a","term_name":"lipoconjugated residue","termid":"MOD:01155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"},{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:01155","MOD:00764"],"is_obsolete":false,"name":"glycosylsphingolipidinositolated residue","synonyms":[{"name":"GSIRes","type":"exact"}],"termid":"MOD:00466"}


id: MONDO:0020367
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Juvenile glaucoma (JG) is a rare autosomal dominant open angle glaucoma, characterized by early onset, severe elevation of intra ocular pressure of rapid progression, leading to optic nerve excavation and, when untreated, substantial visual impairment.","definition_xrefs":["Orphanet:98977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"open-angle glaucoma","termid":"MONDO:0005338"},{"relation_name":"is_a","term_name":"hereditary glaucoma","termid":"MONDO:0018174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"juvenile open angle glaucoma","secondary_identifiers":["MedDRA:10064032","UMLS:C2981140","MEDGEN:453382","SCTID:71111008","ICD9:365.14","GARD:16883","DOID:1068"],"synonyms":[{"name":"JOAG","type":"exact"},{"name":"childhood glaucoma (disease)","type":"exact"},{"name":"glaucoma (disease) of childhood","type":"exact"},{"name":"glaucoma of childhood","type":"exact"},{"name":"juvenile glaucoma","type":"exact"},{"name":"paediatric glaucoma (disease)","type":"exact"},{"name":"pediatric glaucoma (disease)","type":"exact"}],"termid":"MONDO:0020367","xrefs":{"Monarch":{"xref_id":"0020367"}}}


id: PBO:0090474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex RNA-binding subunit Ctf1","termid":"PBO:0090474"}


id: MONDO:0019956
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute inflammatory process affecting the brain parenchyma. Causes include viral infections and less frequently bacterial infections, toxins, and immune-mediated processes.","definition_xrefs":["NCIT:C26760"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"encephalomyelitis","termid":"MONDO:0005156"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"encephalitis","secondary_identifiers":["SCTID:45170000","MEDGEN:4027","UMLS:C0014038","ICD9:323.0","MESH:D004660","Orphanet:97275","ICD9:323.9","ICD10CM:A85","DOID:9588","ICD9:323.8","MedDRA:10014581"],"synonyms":[{"name":"brain inflammation","type":"broad"}],"termid":"MONDO:0019956","xrefs":{"Monarch":{"xref_id":"0019956"}}}


id: MONDO:0044067
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A fungal infection by any of the Candida species in a sterile body compartment.","definition_xrefs":["NCIT:C116813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"candidiasis","termid":"MONDO:0002026"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"candidiasis, invasive","secondary_identifiers":["Orphanet:636945","MEDGEN:296300","MESH:D058365","UMLS:C1609535"],"synonyms":[{"name":"candidiases, invasive","type":"exact"},{"name":"invasive candidiases","type":"exact"},{"name":"invasive candidiasis","type":"exact"}],"termid":"MONDO:0044067","xrefs":{"Monarch":{"xref_id":"0044067"}}}


id: PBO:0011438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bifunctional thiamine-phosphate dipyrophosphorylase/hydroxyethylthiazole kinase","termid":"PBO:0011438"}


id: SO:0001614
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the N terminus.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated_polypeptide_N_terminal","termid":"SO:0001611"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongated_in_frame_polypeptide_N_terminal_elongation","synonyms":[{"name":"elongated in frame polypeptide N terminal","type":"exact"}],"termid":"SO:0001614"}


id: GO:1990793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of substance P by a cell, in which the substance P acts as a neurotransmitter.","definition_xrefs":["PMID:15292051"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotransmitter secretion","termid":"GO:0007269"},{"relation_name":"is_a","term_name":"substance P secretion","termid":"GO:1990772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"substance P secretion, neurotransmission","termid":"GO:1990793"}


id: PBO:0110421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIAL1 pseudogene","termid":"PBO:0110421"}


id: PBO:0059317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L57","termid":"PBO:0059317"}


id: MONDO:0010549
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Charcot-Marie-Tooth neuropathy that is inherited in an X-linked manner, and is associated with mutation(s) in the GJB1 gene, encoding gap junction beta-1 protein. The condition is characterized by moderate to severe motor and sensory neuropathy in males, and mild to no symptoms in females.","definition_xrefs":["NCIT:C129068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type X","termid":"MONDO:0018994"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease X-linked dominant 1","secondary_identifiers":["OMIM:302800","SCTID:763455008","UMLS:C0393808","MEDGEN:98290","GARD:1258","Orphanet:101075","DOID:0110209"],"synonyms":[{"name":"CMT1X","type":"related"},{"name":"CMT2","type":"broad"},{"name":"CMT2, formerly","type":"broad"},{"name":"CMTX","type":"broad"},{"name":"CMTX 1","type":"exact"},{"name":"CMTX1","type":"exact"},{"name":"Charcot Marie Tooth disease X-linked 1","type":"exact"},{"name":"Charcot-Marie-Tooth disease X-linked dominant 1","type":"exact"},{"name":"Charcot-Marie-Tooth disease X-linked dominant type 1","type":"exact"},{"name":"Charcot-Marie-Tooth disease type X caused by mutation in GJB1","type":"exact"},{"name":"Charcot-Marie-Tooth disease, X-linked dominant, 1","type":"exact"},{"name":"Charcot-Marie-Tooth disease, X-linked dominant, type 1","type":"exact"},{"name":"Charcot-Marie-Tooth disease, X-linked, 1","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy X type 1","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy X-linked dominant 1","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, X-linked dominant, 1, X-linked dominant","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, X-linked, 1","type":"exact"},{"name":"Charcot-Marie-Tooth peroneal muscular atrophy, X-linked","type":"related"},{"name":"GJB1 Charcot-Marie-Tooth disease type X","type":"exact"},{"name":"HMSN, X-linked","type":"broad"},{"name":"X-linked Charcot-Marie-Tooth disease type 1","type":"exact"},{"name":"hereditary motor and sensory neuropathy, X-linked","type":"broad"}],"termid":"MONDO:0010549","xrefs":{"Monarch":{"xref_id":"0010549"}}}


id: FYPO:0005698
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which nucleation of microtubules from the equatorial microtubule organizing center does not occur.","definition_xrefs":["PomBase:mah","PMID:19001497"],"direct_ancestors":[{"relation_name":"has_output","term_name":"cytoplasmic microtubules nucleated from eMTOC absent from cell","termid":"FYPO:0004619"},{"relation_name":"is_a","term_name":"abolished cytoplasmic microtubule nucleation","termid":"FYPO:0005693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000054","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished microtubule nucleation from eMTOC","synonyms":[{"name":"abolished cytoplasmic microtubule nucleation from eMTOC","type":"exact"},{"name":"abolished microtubule nucleation from eMTOC during mitotic cell cycle","type":"exact"},{"name":"abolished microtubule nucleation from eMTOC during vegetative growth","type":"exact"},{"name":"abolished microtubule nucleation from equatorial microtubule organizing center","type":"exact"},{"name":"abolished microtubule nucleation from equatorial microtubule organizing centre","type":"exact"},{"name":"microtubule nucleation from eMTOC abolished","type":"exact"}],"termid":"FYPO:0005698"}


id: PBO:0069379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 639, pseudogene","termid":"PBO:0069379"}


id: PBO:0077047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THRAP3 pseudogene 2","termid":"PBO:0077047"}


id: GO:1903257
data:
  {"annotated_genes":["SJAG_00832","SJAG_03856"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103127,111029],"is_not":false,"summary":null,"term":"GO:1903257"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of selenoneine.","definition_xrefs":["GO_REF:0000068","PMID:24828577","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine biosynthetic process","termid":"GO:0006578"},{"relation_name":"is_a","term_name":"modified histidine biosynthetic process","termid":"GO:0052703"},{"relation_name":"is_a","term_name":"selenoneine metabolic process","termid":"GO:1903256"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00832":null,"SJAG_03856":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"selenoneine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"L-selenoneine biosynthetic process","type":"narrow"},{"name":"selenoneine anabolism","type":"exact"},{"name":"selenoneine biosynthesis","type":"exact"},{"name":"selenoneine formation","type":"exact"},{"name":"selenoneine synthesis","type":"exact"}],"termid":"GO:1903257","terms_by_termid":{"GO:1903257":null}}


id: FYECO:0000317
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which urea was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ urea","synonyms":[{"name":"urea added","type":"exact"}],"termid":"FYECO:0000317"}


id: MONDO:0000387
data:
  {"annotated_genes":["SJAG_01007"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84581],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008787"}]},"cv_name":"mondo","definition":"Anemia in which the circulating RBCs are smaller than the usual size of RBCs (microcytic) and have decreased red color (hypochromic).","direct_ancestors":[{"relation_name":"is_a","term_name":"microcytic anemia","termid":"MONDO:0001245"},{"relation_name":"is_a","term_name":"hypochromic anemia","termid":"MONDO:0001357"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"hypochromic microcytic anemia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["HP:0004840","MESH:C536357","UMLS:C0271901","SCTID:44666001","MEDGEN:124413","DOID:0050642"],"synonyms":[{"name":"hypochromic microcytic anaemia (disease)","type":"exact"},{"name":"hypochromic microcytic anemia","type":"exact"},{"name":"hypochromic microcytic anemia (disease)","type":"exact"}],"termid":"MONDO:0000387","terms_by_termid":{"MONDO:0008787":null},"xrefs":{"Monarch":{"xref_id":"0000387"}}}


id: PBO:0056435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 8","termid":"PBO:0056435"}


id: PBO:0077761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOMM20 pseudogene 3","termid":"PBO:0077761"}


id: MONDO:0018626
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition resembling typhoid fever that is caused by infection by Salmonella enterica serovar Parathyphi.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salmonellosis","termid":"MONDO:0000827"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paratyphoid fever","secondary_identifiers":["ICD9:002.3","UMLS:C0030528","icd11.foundation:1780040028","MEDGEN:18303","MESH:D010284","Orphanet:443227","ICD9:002.1","EFO:0007420","ICD9:002.9","NCIT:C34897","DOID:3055","ICD9:002.2","SCTID:51254007","GARD:21855"],"synonyms":[{"name":"paratyphoid","type":"related"},{"name":"paratyphoid A fever","type":"related"},{"name":"paratyphoid B fever","type":"related"},{"name":"paratyphoid C fever","type":"related"},{"name":"paratyphoid a","type":"related"},{"name":"paratyphoid b","type":"related"},{"name":"paratyphoid c","type":"related"},{"name":"paratyphoid fever A","type":"related"},{"name":"paratyphoid fever B","type":"related"},{"name":"paratyphoid fever C","type":"related"}],"termid":"MONDO:0018626","xrefs":{"Monarch":{"xref_id":"0018626"}}}


id: GO:0071098
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha6-beta4 integrin complex bound to the Src family tyrosine kinase Fyn.","definition_xrefs":["PMID:11684709"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"alpha6-beta4 integrin-Fyn complex","synonyms":[{"name":"ITGA6-ITGB4-FYN complex","type":"narrow"}],"termid":"GO:0071098"}


id: PBO:0064783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase, Mg2+/Mn2+ dependent 1D","termid":"PBO:0064783"}


id: PBO:0030660
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_Man9GlcNAc_level","termid":"PBO:0030660"}


id: GO:0070597
data:
  {"annotated_genes":["SJAG_04666","SJAG_02278","SJAG_00610","SJAG_02916","SJAG_04184","SJAG_04236","SJAG_01028","SJAG_00424","SJAG_03057"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117291,113874,88622,108562,103673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[102348,88916,91910,94422],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds, found in the walls of cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall polysaccharide metabolic process","termid":"GO:0010383"},{"relation_name":"is_a","term_name":"(1->3)-alpha-glucan metabolic process","termid":"GO:0070595"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_01028":null,"SJAG_02278":null,"SJAG_02916":null,"SJAG_03057":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0005975","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"cell wall (1->3)-alpha-glucan metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cell wall 1,3-alpha-glucan metabolic process","type":"exact"},{"name":"cell wall 1,3-alpha-glucan metabolism","type":"exact"},{"name":"cell wall alpha-1,3 glucan metabolic process","type":"exact"},{"name":"cell wall alpha-1,3 glucan metabolism","type":"exact"}],"termid":"GO:0070597","terms_by_termid":{"GO:0070600":null,"GO:0070610":null}}


id: PBO:0038680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA synthetase medium chain family member 5 pseudogene 1","termid":"PBO:0038680"}


id: PBO:0052853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 4-9","termid":"PBO:0052853"}


id: GO:0035122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring in the embryo, by which the anatomical structures of the medial fin are generated and organized. Medial fins are unpaired fins of fish, usually located dorsomedially or ventromedially and primarily used for stability while swimming.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic appendage morphogenesis","termid":"GO:0035113"},{"relation_name":"is_a","term_name":"medial fin morphogenesis","termid":"GO:0035141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic medial fin morphogenesis","synonyms":[{"name":"embryonic unpaired fin morphogenesis","type":"exact"}],"termid":"GO:0035122"}


id: MONDO:0000180
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete inflammatory skin and bowel disease, neonatal (obsolete MONDO:0000180)","termid":"MONDO:0000180","xrefs":{"Monarch":{"xref_id":"0000180"}}}


id: PBO:0030257
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_SAGA_complex_localization_to_promoter_region","termid":"PBO:0030257"}


id: FYPO:0005182
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein degradation is decreased when the cell is exposed to ultraviolet light.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein degradation during vegetative growth","termid":"FYPO:0000846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein degradation during cellular response to UV","synonyms":[{"name":"decreased protein breakdown during cellular response to UV","type":"exact"},{"name":"decreased protein catabolic process during cellular response to UV","type":"exact"},{"name":"decreased protein catabolism during cellular response to UV","type":"exact"},{"name":"decreased protein degradation during cellular response to UV during mitotic cell cycle","type":"related"},{"name":"decreased protein degradation during cellular response to UV during vegetative growth","type":"exact"},{"name":"decreased protein degradation during cellular response to ultraviolet light","type":"exact"},{"name":"reduced protein degradation during cellular response to UV","type":"exact"}],"termid":"FYPO:0005182"}


id: FYPO:0000742
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to actin cortical patches is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell cortex during vegetative growth","termid":"FYPO:0000928"},{"relation_name":"is_a","term_name":"abnormal protein localization to actin cytoskeleton during vegetative growth","termid":"FYPO:0007578"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization to actin cortical patch","synonyms":[{"name":"abnormal protein localisation to actin cortical patch","type":"exact"},{"name":"abnormal protein localization to F-actin patch","type":"exact"},{"name":"abnormal protein localization to actin cortical patch during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to actin cortical patch during vegetative growth","type":"exact"},{"name":"abnormal protein localization to actin patch","type":"exact"}],"termid":"FYPO:0000742"}


id: GO:0046184
data:
  {"annotated_genes":["SJAG_00707","SJAG_00691","SJAG_01543","SJAG_00252","SJAG_01881","SJAG_01383","SJAG_04192","SJAG_00283"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036001"},{"annotations":[115849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046166"},{"annotations":[99189,115193],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009443"},{"annotations":[100369,113885],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042821"},{"annotations":[94980,63766,87198],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042823"},{"annotations":[111318],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010144"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of aldehydes, any organic compound with the formula R-CH=O.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde metabolic process","termid":"GO:0006081"},{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00252":null,"SJAG_00283":null,"SJAG_00691":null,"SJAG_00707":null,"SJAG_01383":null,"SJAG_01543":null,"SJAG_01881":null,"SJAG_04192":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aldehyde biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"aldehyde anabolism","type":"exact"},{"name":"aldehyde biosynthesis","type":"exact"},{"name":"aldehyde formation","type":"exact"},{"name":"aldehyde synthesis","type":"exact"}],"termid":"GO:0046184","terms_by_termid":{"GO:0009443":null,"GO:0010144":null,"GO:0036001":null,"GO:0042821":null,"GO:0042823":null,"GO:0046166":null}}


id: GO:0140115
data:
  {"annotated_genes":["SJAG_02344","SJAG_01129","SJAG_03817","SJAG_03363","SJAG_03808","SJAG_01669","SJAG_01145","SJAG_02602","SJAG_01973","SJAG_03951","SJAG_04258","SJAG_01183","SJAG_04167","SJAG_00233","SJAG_01541","SJAG_02152","SJAG_03079"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57280,109843,114351,116967,118246],"is_not":false,"summary":null,"term":"GO:0140115"},{"annotations":[110452],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140159"},{"annotations":[113236,100317],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140116"},{"annotations":[106676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090539"},{"annotations":[115287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180029"},{"annotations":[111835],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097623"},{"annotations":[87170,87171,113265,96227],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120029"},{"annotations":[96229],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036376"},{"annotations":[116517,95978,117452],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990961"}]},"cv_name":"biological_process","definition":"The directed movement of some substance from inside of a cell, across the plasma membrane and into the extracellular region.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"},{"relation_name":"is_a","term_name":"export from cell","termid":"GO:0140352"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00233":null,"SJAG_01129":null,"SJAG_01145":null,"SJAG_01183":null,"SJAG_01541":null,"SJAG_01669":null,"SJAG_01973":null,"SJAG_02152":null,"SJAG_02344":null,"SJAG_02602":null,"SJAG_03079":null,"SJAG_03363":null,"SJAG_03808":null,"SJAG_03817":null,"SJAG_03951":null,"SJAG_04167":null,"SJAG_04258":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"export across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"efflux","type":"broad"}],"termid":"GO:0140115","terms_by_termid":{"GO:0036376":null,"GO:0090539":null,"GO:0097623":null,"GO:0120029":null,"GO:0140115":null,"GO:0140116":null,"GO:0140159":null,"GO:0180029":null,"GO:1990961":null}}


id: GO:0030753
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + xanthotoxol = S-adenosyl-L-homocysteine + xanthotoxin. Xanthotoxol is also known as 8-hydroxyfuranocoumarin and xanthotoxin as 8-methoxyfuranocoumarin.","definition_xrefs":["EC:2.1.1.70"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"8-hydroxyfuranocoumarin 8-O-methyltransferase activity","secondary_identifiers":["GO:0030765","KEGG_REACTION:R02982"],"synonyms":[{"name":"S-adenosyl-L-methionine:8-hydroxyfuranocoumarin 8-O-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:8-hydroxyfurocoumarin 8-O-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:xanthotoxol O-methyltransferase activity","type":"related"},{"name":"XMT activity","type":"related"},{"name":"furanocoumarin 8-O-methyl-transferase activity","type":"related"},{"name":"furanocoumarin 8-methyltransferase activity","type":"related"},{"name":"xanthotoxol 8-O-methyltransferase activity","type":"related"},{"name":"xanthotoxol O-methyltransferase activity","type":"exact"},{"name":"xanthotoxol methyltransferase activity","type":"related"}],"termid":"GO:0030753"}


id: FYPO:0007266
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the endoplasmic reticulum (ER) colocalizes with eisosomes to a lower extent than normal.","definition_xrefs":["PMID:32023460","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cortical endoplasmic reticulum organization","termid":"FYPO:0007571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased colocalization of cortical endoplasmic reticulum with eisosomes","synonyms":[{"name":"decreased colocalization of cortical ER with eisosomes","type":"exact"},{"name":"decreased colocalization of cortical endoplasmic reticulum with eisosomes during mitotic cell cycle","type":"related"},{"name":"decreased colocalization of cortical endoplasmic reticulum with eisosomes during vegetative growth","type":"exact"},{"name":"decreased colocalization of tubular cortical ER with eisosomes","type":"exact"},{"name":"decreased cortical ER-eisosome colocalization","type":"exact"},{"name":"reduced colocalization of cortical endoplasmic reticulum with eisosomes","type":"exact"}],"termid":"FYPO:0007266"}


id: PBO:0026814
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_during_meiotic_cell_cycle","termid":"PBO:0026814"}


id: PBO:0064126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PKHD1 ciliary IPT domain containing fibrocystin/polyductin","termid":"PBO:0064126"}


id: PBO:0029178
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_peptide-serine-N-acetyltransferase_activity","termid":"PBO:0029178"}


id: PR:Q9UT35
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ectonucleoside triphosphate diphosphohydrolase 6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00693"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanosine-diphosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC824.08","secondary_identifiers":["UniProtKB:Q9UT35"],"synonyms":[{"name":"GDPase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ENTPD6","type":"exact"}],"termid":"PR:Q9UT35"}


id: PBO:0039920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGEF18 antisense RNA 1","termid":"PBO:0039920"}


id: PR:O94624
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tim54 gene.","definition_xrefs":["UniProtKB:O94624","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import inner membrane translocase subunit tim54 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1347.04","synonyms":[{"name":"Spom972h-tim54","type":"exact"}],"termid":"PR:O94624"}


id: MONDO:0009997
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Roberts syndrome (obsolete MONDO:0009997)","termid":"MONDO:0009997","xrefs":{"Monarch":{"xref_id":"0009997"}}}


id: GO:0008074
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Complex that possesses guanylate cyclase activity and is not bound to a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005829","GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"guanylate cyclase complex, soluble","termid":"GO:0008074"}


id: GO:0106392
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Aprotein complex required for the splicing of intron 3 of the cytochrome b (COB) gene. In S. cerevisiae, the complex contains the maturase bI3 (which derives from one of the products of the splicing), the MRS1 cofactor and the intron 4 of the cytochrome b pre-mRNA. The two proteins stimulate the ribozyme activity of the pre-mRNA which autoctalyse a group I intron splicing.","definition_xrefs":["GOC:lnp","PMID:11773622"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoribonuclease complex","termid":"GO:1902555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"bI3 intron splicing complex","secondary_identifiers":["Intact:EBI-16426213"],"termid":"GO:0106392"}


id: MONDO:0032621
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex I deficiency, nuclear type","termid":"MONDO:0100223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 1 deficiency, nuclear type 16","secondary_identifiers":["MEDGEN:1648351","OMIM:618238","DOID:0112096","GARD:16324","UMLS:C4748785"],"synonyms":[{"name":"MC1DN16","type":"related"},{"name":"MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 16","type":"related"}],"termid":"MONDO:0032621","xrefs":{"Monarch":{"xref_id":"0032621"}}}


id: PBO:0070327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 16","termid":"PBO:0070327"}


id: MONDO:0002058
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, well circumscribed neoplasm that arises from the breast. Representative examples include apocrine adenoma, tubular adenoma, and pleomorphic adenoma.","definition_xrefs":["NCIT:C40382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast benign neoplasm","termid":"MONDO:0000620"},{"relation_name":"is_a","term_name":"adenoma","termid":"MONDO:0004972"},{"relation_name":"is_a","term_name":"benign epithelial neoplasm","termid":"MONDO:0036976"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast adenoma","secondary_identifiers":["UMLS:C1328385","DOID:1625","MEDGEN:231286"],"synonyms":[{"name":"Ademoma - breast","type":"exact"},{"name":"breast adenoma","type":"exact"}],"termid":"MONDO:0002058","xrefs":{"Monarch":{"xref_id":"0002058"}}}


id: PBO:0042361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD109 antisense RNA 1","termid":"PBO:0042361"}


id: PBO:0067854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 156","termid":"PBO:0067854"}


id: GO:0061416
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under salt stress. The stress is usually an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.","definition_xrefs":["GOC:dph","PMID:18667581"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter in response to salt stress (obsolete GO:0061416)","termid":"GO:0061416"}


id: MONDO:0015489
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete predominantly medium-vessel vasculitis (obsolete MONDO:0015489)","secondary_identifiers":["Orphanet:156143"],"termid":"MONDO:0015489","xrefs":{"Monarch":{"xref_id":"0015489"}}}


id: PBO:0039828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginase 2","termid":"PBO:0039828"}


id: PBO:0081493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF385D antisense RNA 1","termid":"PBO:0081493"}


id: GO:0010738
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of protein kinase A signaling. PKA signaling is the series of reactions, mediated by the intracellular serine/threonine kinase protein kinase A, which occurs as a result of a single trigger reaction or compound.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"protein kinase A signaling","termid":"GO:0010737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of protein kinase A signaling","synonyms":[{"name":"regulation of PKA signaling cascade","type":"related"},{"name":"regulation of protein kinase A signaling cascade","type":"related"},{"name":"regulation of protein kinase A signalling cascade","type":"related"}],"termid":"GO:0010738"}


id: PBO:0018125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malate dehydrogenase Mdh1 (predicted)","termid":"PBO:0018125"}


id: GO:1902436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of male mating behavior.","definition_xrefs":["PMID:24089208","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of behavior","termid":"GO:0048521"},{"relation_name":"is_a","term_name":"regulation of male mating behavior","termid":"GO:1902435"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"male mating behavior","termid":"GO:0060179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of male mating behavior","synonyms":[{"name":"down regulation of male mating behavior","type":"exact"},{"name":"down-regulation of male mating behavior","type":"exact"},{"name":"downregulation of male mating behavior","type":"exact"},{"name":"inhibition of male mating behavior","type":"narrow"}],"termid":"GO:1902436"}


id: MONDO:0003624
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A breast adenocarcinoma characterized by the presence of serous (acinic cell) differentiation.","definition_xrefs":["NCIT:C40367"],"direct_ancestors":[{"relation_name":"is_a","term_name":"invasive ductal breast carcinoma","termid":"MONDO:0004953"},{"relation_name":"is_a","term_name":"acinar cell carcinoma","termid":"MONDO:0004965"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"acinic cell breast carcinoma","secondary_identifiers":["MEDGEN:272988","UMLS:C1515868","DOID:5743"],"synonyms":[{"name":"acinar cell breast carcinoma","type":"exact"},{"name":"acinic cell breast carcinoma","type":"exact"},{"name":"breast carcinoma of acinar cell","type":"exact"}],"termid":"MONDO:0003624","xrefs":{"Monarch":{"xref_id":"0003624"}}}


id: PBO:0052905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 12-2","termid":"PBO:0052905"}


id: MONDO:0016801
data:
  {"annotated_genes":["SJAG_00404","SJAG_01890","SJAG_01589","SJAG_00547","SJAG_01417"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85184],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012557"},{"annotations":[85425,85424],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014775"},{"annotations":[85176],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008922"},{"annotations":[85290],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014804"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial membrane transport disorder","termid":"MONDO:0016800"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00404":null,"SJAG_00547":null,"SJAG_01417":null,"SJAG_01589":null,"SJAG_01890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial substrate carrier disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:254830","UMLS:C5680716","icd11.foundation:1118834100","GARD:20762","MEDGEN:1842923"],"termid":"MONDO:0016801","terms_by_termid":{"MONDO:0008922":null,"MONDO:0012557":null,"MONDO:0014775":null,"MONDO:0014804":null},"xrefs":{"Monarch":{"xref_id":"0016801"}}}


id: MONDO:0000371
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A in situ carcinoma that involves the oral cavity.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in situ carcinoma","termid":"MONDO:0004647"},{"relation_name":"is_a","term_name":"oral cavity carcinoma","termid":"MONDO:0044925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"oral cavity carcinoma in situ","secondary_identifiers":["UMLS:C0347073","DOID:0050610","MEDGEN:138076","NCIT:C4587","SCTID:92660005","MONDO:0021286"],"synonyms":[{"name":"carcinoma in situ of mouth","type":"exact"},{"name":"carcinoma in situ of oral cavity","type":"exact"},{"name":"carcinoma in situ of the mouth","type":"exact"},{"name":"carcinoma in situ of the oral cavity","type":"exact"},{"name":"mouth carcinoma in situ","type":"exact"},{"name":"oral cavity in situ carcinoma","type":"exact"},{"name":"stage 0 carcinoma of mouth","type":"exact"},{"name":"stage 0 carcinoma of oral cavity","type":"exact"},{"name":"stage 0 carcinoma of the mouth","type":"exact"},{"name":"stage 0 carcinoma of the oral cavity","type":"exact"},{"name":"stage 0 mouth carcinoma","type":"exact"},{"name":"stage 0 oral cavity cancer","type":"exact"},{"name":"stage 0 oral cavity cancer aJCC v6","type":"exact"},{"name":"stage 0 oral cavity cancer aJCC v6 and v7","type":"exact"},{"name":"stage 0 oral cavity cancer aJCC v7","type":"exact"},{"name":"stage 0 oral cavity carcinoma","type":"exact"}],"termid":"MONDO:0000371","xrefs":{"Monarch":{"xref_id":"0000371"}}}


id: MONDO:0030855
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Ehlers-Danlos/osteogenesis imperfecta syndrome","termid":"MONDO:0016470"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"combined osteogenesis imperfecta and Ehlers-Danlos syndrome 2","secondary_identifiers":["MEDGEN:1751229","OMIM:619120","GARD:18317","UMLS:C5436847"],"synonyms":[{"name":"OIEDS Syndrome 2","type":"exact"},{"name":"OIEDS2","type":"exact"},{"name":"combined osteogenesis imperfecta and Ehlers-Danlos syndrome 2","type":"exact"}],"termid":"MONDO:0030855","xrefs":{"Monarch":{"xref_id":"0030855"}}}


id: PBO:0080798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exportin 4","termid":"PBO:0080798"}


id: PBO:0040396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V1 subunit E2","termid":"PBO:0040396"}


id: GO:1902550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any lymphoid lineage cell migration into thymus that is involved in thymus epithelium morphogenesis.","definition_xrefs":["GOC:TermGenie","PMID:22342843","GOC:cvs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphoid lineage cell migration into thymus","termid":"GO:0097535"},{"relation_name":"part_of","term_name":"thymus epithelium morphogenesis","termid":"GO:0097536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphoid lineage cell migration into thymus involved in thymus epithelium morphogenesis","synonyms":[{"name":"lymphoid lineage cell migration into thymus involved in thymic epithelium morphogenesis","type":"exact"},{"name":"lymphoid lineage restricted progenitor cell migration into thymus involved in thymic epithelium morphogenesis","type":"exact"},{"name":"lymphoid lineage restricted progenitor cell migration into thymus involved in thymus epithelium morphogenesis","type":"exact"}],"termid":"GO:1902550"}


id: PBO:0068615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 66, pseudogene","termid":"PBO:0068615"}


id: GO:0097322
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a 7SK small nuclear RNA (7SK snRNA).","definition_xrefs":["PMID:21853533","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA binding","termid":"GO:0017069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"7SK snRNA binding","synonyms":[{"name":"7SK small nuclear RNA binding","type":"exact"}],"termid":"GO:0097322"}


id: GO:0030229
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a very-low-density lipoprotein particle and delivering the very-low-density lipoprotein into the cell via endocytosis.","definition_xrefs":["GOC:bf","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipoprotein particle receptor activity","termid":"GO:0030228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038024"}],"interesting_parent_ids":["GO:0003674","GO:0038024"],"is_obsolete":false,"name":"very-low-density lipoprotein particle receptor activity","secondary_identifiers":["Wikipedia:VLDL_receptor"],"synonyms":[{"name":"VLDL receptor","type":"exact"},{"name":"apolipoprotein E receptor activity","type":"related"},{"name":"very-low-density lipoprotein receptor activity","type":"exact"}],"termid":"GO:0030229"}


id: PBO:0034373
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-overlaps_sequence_of","termid":"PBO:0034373"}


id: PBO:0053498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 477","termid":"PBO:0053498"}


id: MONDO:0019231
data:
  {"annotated_genes":["SJAG_00070","SJAG_03934","SJAG_02297","SJAG_04263"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84732],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010480"},{"annotations":[86136],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012073"},{"annotations":[86104],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011624"},{"annotations":[85601],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014881"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disorders of pentose/polyol metabolism","termid":"MONDO:0018605"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00070":null,"SJAG_02297":null,"SJAG_03934":null,"SJAG_04263":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0037792"],"is_obsolete":false,"name":"inborn disorder of pentose phosphate metabolism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:2067324607","MEDGEN:1842861","Orphanet:79186","UMLS:C5681279","GARD:18962"],"synonyms":[{"name":"disorder of pentose phosphate metabolism","type":"related"}],"termid":"MONDO:0019231","terms_by_termid":{"MONDO:0010480":null,"MONDO:0011624":null,"MONDO:0012073":null,"MONDO:0014881":null},"xrefs":{"Monarch":{"xref_id":"0019231"}}}


id: FYPO:0006808
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the degradation of messenger RNA (mRNA) molecules via the deadenylation-dependent pathway, which includes poly(A) tail shortening, is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression regulation phenotype during vegetative growth","termid":"FYPO:0001333"},{"relation_name":"is_a","term_name":"abnormal RNA catabolic process during vegetative growth","termid":"FYPO:0002136"},{"relation_name":"is_a","term_name":"abnormal gene expression","termid":"FYPO:0006551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000294","FYPO:0005447","FYPO:0006551","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal deadenylation-dependent decay","synonyms":[{"name":"abnormal deadenylation-dependent decay during mitotic cell cycle","type":"related"},{"name":"abnormal deadenylation-dependent decay during vegetative growth","type":"exact"},{"name":"abnormal nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay","type":"exact"}],"termid":"FYPO:0006808"}


id: GO:0033491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving coniferin, 4-(3-hydroxyprop-1-en-1-yl)-2-methoxyphenyl beta-D-glucopyranoside.","definition_xrefs":["MetaCyc:PWY-116","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"beta-glucoside metabolic process","termid":"GO:1901804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"coniferin metabolic process","synonyms":[{"name":"coniferin metabolism","type":"exact"}],"termid":"GO:0033491"}


id: MOD:01262
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["PubMed:15549660","Unimod:270#R","PubMed:12590383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleophilic addtion to cytopiloyne","termid":"MOD:00590"},{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophilic addition to cytopiloyne - site R","synonyms":[{"name":"Cytopiloyne","type":"related"},{"name":"nucleophilic addtion to cytopiloyne","type":"related"}],"termid":"MOD:01262"}


id: PBO:0087908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor for glycerol biosynthetic genes; required for the transient induction of glycerol biosynthetic genes GPD1 and GPP2 in response to high osmolarity; targets Hog1p to osmostress responsive promoters; has similarity to Msn1p and Gcr1p","termid":"PBO:0087908"}


id: MONDO:0004790
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A reversible condition wherein large vacuoles of triglyceride fat accumulate in liver cells via the process of steatosis.","definition_xrefs":["Wikipedia:Fatty_liver"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liver disorder","termid":"MONDO:0005154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"fatty liver disease","secondary_identifiers":["UMLS:C2711227","ICD9:571.8","ICD9:571.0","SCTID:371330000","DOID:9452","MEDGEN:398225","MESH:D005234","SCTID:197321007"],"synonyms":[{"name":"fatty change of liver","type":"exact"},{"name":"fatty liver","type":"exact"},{"name":"hepatic lipidosis","type":"exact"},{"name":"steatosis of liver","type":"exact"}],"termid":"MONDO:0004790","xrefs":{"Monarch":{"xref_id":"0004790"}}}


id: PBO:0065665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase receptor type N2","termid":"PBO:0065665"}


id: PBO:0050967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon omega 1","termid":"PBO:0050967"}


id: PBO:0063855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein interacting with PRKCA 1","termid":"PBO:0063855"}


id: PBO:0045422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"divergent-paired related homeobox pseudogene 2","termid":"PBO:0045422"}


id: GO:0045113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of integrins.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macromolecule biosynthetic process","termid":"GO:0010556"},{"relation_name":"regulates","term_name":"integrin biosynthetic process","termid":"GO:0045112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of integrin biosynthetic process","synonyms":[{"name":"regulation of integrin anabolism","type":"exact"},{"name":"regulation of integrin biosynthesis","type":"exact"},{"name":"regulation of integrin formation","type":"exact"},{"name":"regulation of integrin synthesis","type":"exact"}],"termid":"GO:0045113"}


id: PBO:0017732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ABC family iron transmembrane transporter Atm1","termid":"PBO:0017732"}


id: PBO:0073184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenoprotein O","termid":"PBO:0073184"}


id: GO:0061108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the seminal vesicle epithelium over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"is_a","term_name":"epithelium development","termid":"GO:0060429"},{"relation_name":"part_of","term_name":"seminal vesicle development","termid":"GO:0061107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"seminal vesicle epithelium development","termid":"GO:0061108"}


id: MONDO:0012671
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"essential tremor","termid":"MONDO:0003233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tremor, hereditary essential, 3","secondary_identifiers":["DOID:0111430","MESH:C566949","MEDGEN:409870","OMIM:611456","UMLS:C1969617"],"synonyms":[{"name":"ETM3","type":"exact"},{"name":"essential tremor, hereditary, 3","type":"exact"},{"name":"tremor, hereditary essential, 3","type":"exact"}],"termid":"MONDO:0012671","xrefs":{"Monarch":{"xref_id":"0012671"}}}


id: MONDO:0018700
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pseudohypoparathyroidism without Albright hereditary osteodystrophy (obsolete MONDO:0018700)","secondary_identifiers":["Orphanet:457062"],"termid":"MONDO:0018700","xrefs":{"Monarch":{"xref_id":"0018700"}}}


id: GO:0044104
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,5-dioxopentanoate + NAD+ + H2O = 2-oxoglutarate + NADH + H+.","definition_xrefs":["PMID:16835232","PMID:17202142"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2,5-dioxovalerate dehydrogenase (NAD+) activity","synonyms":[{"name":"2,5-dioxopentanoate dehydrogenase (NAD+) activity","type":"exact"},{"name":"2,5-dioxopentanoate:NAD+ 5-oxidoreductase activity","type":"exact"}],"termid":"GO:0044104"}


id: FYPO:0007746
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the spindle elongates during metaphase of the first meiotic nuclear division, when elongation is normally paused.","definition_xrefs":["PMID:32723864","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle assembly during meiosis I","termid":"FYPO:0007745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0000002","FYPO:0005447","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"normal spindle elongation during meiotic metaphase I","synonyms":[{"name":"normal spindle elongation during meiotic metaphase I spindle phase II","type":"exact"},{"name":"normal spindle elongation during metaphase I","type":"exact"},{"name":"normal spindle elongation during metaphase of meiosis I","type":"exact"}],"termid":"FYPO:0007746"}


id: GO:0034139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 3 signaling pathway.","definition_xrefs":["GOC:add","PMID:17328678","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039531"},{"relation_name":"regulates","term_name":"toll-like receptor 3 signaling pathway","termid":"GO:0034138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of toll-like receptor 3 signaling pathway","synonyms":[{"name":"regulation of TLR3 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 3 signalling pathway","type":"exact"}],"termid":"GO:0034139"}


id: GO:0005072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Activity of any of the molecules that transmit the signal from a TGF-beta receptor through the cytoplasm to the nucleus.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete transforming growth factor beta receptor, cytoplasmic mediator activity (obsolete GO:0005072)","synonyms":[{"name":"TGF-beta receptor, cytoplasmic mediator activity","type":"exact"},{"name":"TGFbeta receptor, cytoplasmic mediator activity","type":"exact"}],"termid":"GO:0005072"}


id: PBO:0108690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP, GTPase-activating protein Spa2","termid":"PBO:0108690"}


id: PBO:0026729
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_regulation_of_translation_in_response_to_stress_during_vegetative_growth","termid":"PBO:0026729"}


id: GO:0045462
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the 3-O-acetylation of a trichothecene. Trichothecenes are sesquiterpene epoxide mycotoxins that act as potent inhibitors of eukaryotic protein synthesis.","definition_xrefs":["PMID:10583973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"trichothecene 3-O-acetyltransferase activity","termid":"GO:0045462"}


id: PBO:0059891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 14","termid":"PBO:0059891"}


id: GO:1902106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of leukocyte differentiation.","definition_xrefs":["GOC:TermGenie","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte differentiation","termid":"GO:1902105"},{"relation_name":"is_a","term_name":"negative regulation of hemopoiesis","termid":"GO:1903707"},{"relation_name":"negatively_regulates","term_name":"leukocyte differentiation","termid":"GO:0002521"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of leukocyte differentiation","synonyms":[{"name":"down regulation of immune cell differentiation","type":"exact"},{"name":"down regulation of leucocyte differentiation","type":"exact"},{"name":"down regulation of leukocyte differentiation","type":"exact"},{"name":"down-regulation of immune cell differentiation","type":"exact"},{"name":"down-regulation of leucocyte differentiation","type":"exact"},{"name":"down-regulation of leukocyte differentiation","type":"exact"},{"name":"downregulation of immune cell differentiation","type":"exact"},{"name":"downregulation of leucocyte differentiation","type":"exact"},{"name":"downregulation of leukocyte differentiation","type":"exact"},{"name":"inhibition of immune cell differentiation","type":"narrow"},{"name":"inhibition of leucocyte differentiation","type":"narrow"},{"name":"inhibition of leukocyte differentiation","type":"narrow"},{"name":"negative regulation of immune cell differentiation","type":"exact"},{"name":"negative regulation of leucocyte differentiation","type":"exact"}],"termid":"GO:1902106"}


id: GO:0008782
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenine + S-D-ribosyl-L-homocysteine.","definition_xrefs":["EC:3.2.2.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing N-glycosyl compounds","termid":"GO:0016799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"adenosylhomocysteine nucleosidase activity","secondary_identifiers":["MetaCyc:ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN","RHEA:17805"],"synonyms":[{"name":"5'-methyladenosine nucleosidase activity","type":"related"},{"name":"AdoHcy/MTA nucleosidase activity","type":"related"},{"name":"S-adenosyl-L-homocysteine homocysteinylribohydrolase activity","type":"related"},{"name":"S-adenosylhomocysteine hydrolase activity","type":"broad"},{"name":"S-adenosylhomocysteine nucleosidase activity","type":"related"},{"name":"S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase activity","type":"related"}],"termid":"GO:0008782"}


id: MONDO:1010433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atrial septal defect that occurs in koala.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrial septal defect, non-human animal","termid":"MONDO:1010009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atrial septal defect, koala","secondary_identifiers":["OMIA:000089-38626"],"termid":"MONDO:1010433","xrefs":{"Monarch":{"xref_id":"1010433"}}}


id: GO:0099110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transport of a protein to the cortex of the cell tip, driven by polymerization of a microtubule to which the protein is attached.","definition_xrefs":["GOC:vw","PMID:11018050","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule polymerization based protein transport","termid":"GO:0099112"},{"relation_name":"is_a","term_name":"protein localization to cell cortex of cell tip","termid":"GO:1990896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"microtubule polymerization based protein transport to cell tip cortex","termid":"GO:0099110"}


id: MONDO:0011907
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acrocapitofemoral dysplasia is a recently delineated skeletal dysplasia, characterized clinically by short stature of variable degrees with short limbs, brachydactyly and narrow thorax.","definition_xrefs":["Orphanet:63446"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"},{"relation_name":"is_a","term_name":"acromelic dysplasia","termid":"MONDO:0019695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"acrocapitofemoral dysplasia","secondary_identifiers":["MESH:C564334","DOID:0050604","OMIM:607778","SCTID:720416007","MEDGEN:334681","icd11.foundation:687396416","GARD:10605","UMLS:C1843096"],"synonyms":[{"name":"ACFD","type":"related"},{"name":"acrocapitofemoral dysplasia","type":"exact"}],"termid":"MONDO:0011907","xrefs":{"Monarch":{"xref_id":"0011907"}}}


id: PBO:0035718
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_replication_fork_pausing_at_nucleosome-depleted_regions","termid":"PBO:0035718"}


id: GO:0001676
data:
  {"annotated_genes":["SJAG_03471","SJAG_03909","SJAG_04570","SJAG_04972","SJAG_00102","SJAG_04107","SJAG_03526"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105087,107852,112914],"is_not":false,"summary":null,"term":"GO:0001676"},{"annotations":[100238,103824,97175],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042759"},{"annotations":[113255],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042758"},{"annotations":[97177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1900535"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a long-chain fatty acid. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["GOC:ajp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid metabolic process","termid":"GO:0006631"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00102":null,"SJAG_03471":null,"SJAG_03526":null,"SJAG_03909":null,"SJAG_04107":null,"SJAG_04570":null,"SJAG_04972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"long-chain fatty acid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"long-chain fatty acid metabolism","type":"exact"}],"termid":"GO:0001676","terms_by_termid":{"GO:0001676":null,"GO:0042758":null,"GO:0042759":null,"GO:1900535":null}}


id: FYPO:0007290
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of UDP-glucose 4-epimerase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal UDP-glucose 4-epimerase activity","termid":"FYPO:0007289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0001985","FYPO:0000661","FYPO:0000652"],"is_obsolete":false,"name":"decreased UDP-glucose 4-epimerase activity","synonyms":[{"name":"reduced UDP-glucose 4-epimerase activity","type":"exact"}],"termid":"FYPO:0007290"}


id: GO:0018518
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,6-dihydroxy-3-methyl-5,6-dihydroquinolin-2(1H)-one + NAD+ = 5,6-dihydroxy-3-methyl-2-oxo-1,2-dihydroquinoline + H+ + NADH.","definition_xrefs":["EC:1.3.1.65","RHEA:24556"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"5,6-dihydroxy-3-methyl-2-oxo-1,2,5,6-tetrahydroquinoline dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-643","KEGG_REACTION:R05312","UM-BBD_reactionID:r0053"],"synonyms":[{"name":"5,6-dihydrodiol-3-methyl-2-oxo-1,2-dihydroquinoline dehydrogenase","type":"related"},{"name":"5,6-dihydroxy-3-methyl-2-oxo-1,2,5,6-tetrahydroquinoline:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0018518"}


id: GO:0015103
data:
  {"annotated_genes":["SJAG_01183","SJAG_01033","SJAG_01059","SJAG_04241","SJAG_03401","SJAG_00671","SJAG_01941","SJAG_00612","SJAG_01973","SJAG_00233","SJAG_02463","SJAG_00547","SJAG_01168"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110455],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046715"},{"annotations":[102357],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140987"},{"annotations":[110456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0080139"},{"annotations":[111156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005254"},{"annotations":[113237,100318],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903425"},{"annotations":[115289,116005,104120,93526,103285,109196,112220],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005315"},{"annotations":[105195],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015379"},{"annotations":[109614],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008271"},{"annotations":[110457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005452"},{"annotations":[109615,99843,87893,116118],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015116"},{"annotations":[87894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015117"}]},"cv_name":"molecular_function","definition":"Enables the transfer of inorganic anions from one side of a membrane to the other. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic molecular entity transmembrane transporter activity","termid":"GO:0015318"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00233":null,"SJAG_00547":null,"SJAG_00612":null,"SJAG_00671":null,"SJAG_01033":null,"SJAG_01059":null,"SJAG_01168":null,"SJAG_01183":null,"SJAG_01941":null,"SJAG_01973":null,"SJAG_02463":null,"SJAG_03401":null,"SJAG_04241":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"inorganic anion transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015103","terms_by_termid":{"GO:0005254":null,"GO:0005315":null,"GO:0005452":null,"GO:0008271":null,"GO:0015116":null,"GO:0015117":null,"GO:0015379":null,"GO:0046715":null,"GO:0080139":null,"GO:0140987":null,"GO:1903425":null}}


id: PBO:0029993
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_spindle_microtubules","termid":"PBO:0029993"}


id: PBO:0088126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar membrane polyphosphate polymerase; subunit of the vacuolar transporter chaperone (VTC) complex involved in synthesis and transfer of polyP to the vacuole; regulates membrane trafficking; role in non-autophagic vacuolar fusion; protein abundance increases in response to DNA replication stress","termid":"PBO:0088126"}


id: PBO:0000954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extended Fer/CIP4 (EFC) domain protein Cdc15","termid":"PBO:0000954"}


id: MONDO:0859148
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neurodevelopmental disorder","termid":"MONDO:0700092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with seizures and gingival overgrowth","secondary_identifiers":["OMIM:619323","UMLS:C5543395","MEDGEN:1784299"],"termid":"MONDO:0859148","xrefs":{"Monarch":{"xref_id":"0859148"}}}


id: SO:0000504
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"D_gene_segment","termid":"SO:0000458"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"DJ_gene_segment","termid":"SO:0000572"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D_DJ_C_cluster","synonyms":[{"name":"D DJ C cluster","type":"exact"},{"name":"D-(DJ)-C-CLUSTER","type":"exact"}],"termid":"SO:0000504"}


id: GO:0034281
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ent-copalyl diphosphate = ent-isokaurene + diphosphate.","definition_xrefs":["PMID:17141283"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene synthase activity","termid":"GO:0010333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"ent-isokaurene synthase activity","termid":"GO:0034281"}


id: PBO:0084959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYND domain-containing protein; component of the Mub1p-Ubr2p-Rad6p ubiquitin ligase complex, required for ubiquitination and degradation of Rpn4p; interacts with Ubr2p (E3) and indirectly with Rad6p (E2); short-lived protein degraded in a Ubr2p/Rad6p dependent manner; proposed to function as both a partner and substrate of the Ubr2p/Rad6p ubiquitin ligase; similar to the A. nidulans samB gene","termid":"PBO:0084959"}


id: PBO:0091028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynactin complex actin-like protein Arp10","termid":"PBO:0091028"}


id: GO:0071817
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the proteins MMS19, MIP18 and XPD, localizes to mitotic spindle during mitosis, and is required for proper chromosome segregation.","definition_xrefs":["GOC:sp","PMID:20797633"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"spindle","termid":"GO:0005819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0015630","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"MMXD complex","synonyms":[{"name":"MMS19-MIP18-XPD complex","type":"exact"}],"termid":"GO:0071817"}


id: PBO:0068416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease/angiogenin inhibitor 1","termid":"PBO:0068416"}


id: PBO:0002203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NatA N-acetyltransferase complex catalytic subunit Naa10 (predicted)","termid":"PBO:0002203"}


id: GO:0098823
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The amidinylation of peptidyl-cysteine to form peptidyl-S-amidino-L-cysteine.","definition_xrefs":["RESID:AA0335"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-cysteine modification to S-amindino-L-cysteine (obsolete GO:0098823)","termid":"GO:0098823"}


id: PBO:0035969
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H4-K20_methylation_during_vegetative_growth","termid":"PBO:0035969"}


id: PBO:0040261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy related 14","termid":"PBO:0040261"}


id: MONDO:0007364
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"distal arthrogryposis","termid":"MONDO:0019942"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis, distal, type 2E","secondary_identifiers":["OMIM:121070","UMLS:C1852597","GARD:10135","MESH:C535384","MEDGEN:343844"],"synonyms":[{"name":"arthrogryposis, distal, type 2E","type":"exact"},{"name":"contractures of fingers and jaw","type":"related"}],"termid":"MONDO:0007364","xrefs":{"Monarch":{"xref_id":"0007364"}}}


id: MONDO:0019393
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Idiopathic malabsorption due to increased acid bile synthesis is an intestinal disease of unknown etiology characterized by an overproduction of bile acids which leads to chronic watery diarrhea.","definition_xrefs":["Orphanet:84065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of bile acid synthesis","termid":"MONDO:0019218"},{"relation_name":"is_a","term_name":"malabsorption syndrome","termid":"MONDO:0020598"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0004335","MONDO:0005066"],"is_obsolete":false,"name":"idiopathic malabsorption due to bile acid synthesis defects","secondary_identifiers":["UMLS:C4274509","GARD:19046","MEDGEN:900722"],"synonyms":[{"name":"idiopathic bile acid malabsorption","type":"exact"}],"termid":"MONDO:0019393","xrefs":{"Monarch":{"xref_id":"0019393"}}}


id: PBO:0061125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLR family pyrin domain containing 14","termid":"PBO:0061125"}


id: GO:0043608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of formamide, the simplest amide, HCONH2, derived from formic acid.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide catabolic process","termid":"GO:0043605"},{"relation_name":"is_a","term_name":"formamide metabolic process","termid":"GO:0043606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"formamide catabolic process","termid":"GO:0043608"}


id: PBO:0065256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 22","termid":"PBO:0065256"}


id: PATO:0002135
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A duration quality of a process inhering in a bearer by virtue of the bearer's delay to complete the closure of the opening of an anatomical entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delayed","termid":"PATO:0000502"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delayed closure","termid":"PATO:0002135"}


id: PBO:0040588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BACE2 intronic transcript 1","termid":"PBO:0040588"}


id: PBO:0090362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial membrane protein, conserved in yeast and apicomplexa","termid":"PBO:0090362"}


id: PBO:0035694
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-causally_upstream_of,_negative_effect","termid":"PBO:0035694"}


id: PBO:0054470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1870","termid":"PBO:0054470"}


id: PBO:0054428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1824","termid":"PBO:0054428"}


id: PBO:0077233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane and coiled-coil domain family 1","termid":"PBO:0077233"}


id: PBO:0001227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit (predicted)","termid":"PBO:0001227"}


id: PBO:0041695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium homeostasis modulator 1","termid":"PBO:0041695"}


id: GO:0071479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to ionizing radiation","termid":"GO:0010212"},{"relation_name":"is_a","term_name":"cellular response to radiation","termid":"GO:0071478"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to ionizing radiation","synonyms":[{"name":"cellular response to ionising radiation","type":"exact"},{"name":"cellular response to ionizing radiation stimulus","type":"exact"}],"termid":"GO:0071479"}


id: PBO:0058395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4767","termid":"PBO:0058395"}


id: PBO:0084803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein of unknown function; conserved in A. gossypii; authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0084803"}


id: GO:0060372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the establishment or extent of a membrane potential in the polarizing direction towards the resting potential in an atrial cardiomyocyte.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardiac muscle cell membrane repolarization","termid":"GO:0099623"},{"relation_name":"regulates","term_name":"atrial cardiac muscle cell membrane repolarization","termid":"GO:0099624"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of atrial cardiac muscle cell membrane repolarization","synonyms":[{"name":"atrial repolarization","type":"related"},{"name":"electrocardiogram QRS complex","type":"related"},{"name":"regulation of atrial cardiac muscle cell repolarization","type":"exact"},{"name":"regulation of atrial cardiomyocyte membrane repolarization","type":"exact"}],"termid":"GO:0060372"}


id: GO:0090167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which disassembled Golgi vesicles are localized into daughter cells upon cell division.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi organization","termid":"GO:0007030"},{"relation_name":"is_a","term_name":"Golgi localization","termid":"GO:0051645"},{"relation_name":"part_of","term_name":"Golgi inheritance","termid":"GO:0048313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"Golgi distribution to daughter cells","synonyms":[{"name":"Golgi apparatus distribution to daughter cells","type":"exact"}],"termid":"GO:0090167"}


id: MONDO:0003580
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete embryonal testis carcinoma (obsolete MONDO:0003580)","termid":"MONDO:0003580","xrefs":{"Monarch":{"xref_id":"0003580"}}}


id: GO:0046961
data:
  {"annotated_genes":["SJAG_01817","SJAG_01471","SJAG_01913","SJAG_01397","SJAG_03406","SJAG_04955","SJAG_02782","SJAG_00136","SJAG_00516","SJAG_01447","SJAG_02023","SJAG_05294","SJAG_00212","SJAG_04015"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[87514,89325,89642,91538,95141,96106,98420,99443,99513,101138,102175,103413,109368,118227],"is_not":false,"summary":null,"term":"GO:0046961"}]},"cv_name":"molecular_function","definition":"Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out), by a rotational mechanism.","definition_xrefs":["RHEA:57721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"},{"relation_name":"is_a","term_name":"ATPase activity, coupled to transmembrane movement of ions, rotational mechanism","termid":"GO:0044769"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00136":null,"SJAG_00212":null,"SJAG_00516":null,"SJAG_01397":null,"SJAG_01447":null,"SJAG_01471":null,"SJAG_01817":null,"SJAG_01913":null,"SJAG_02023":null,"SJAG_02782":null,"SJAG_03406":null,"SJAG_04015":null,"SJAG_04955":null,"SJAG_05294":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"proton-transporting ATPase activity, rotational mechanism","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ATP phosphohydrolase (H+-transporting) activity","type":"narrow"},{"name":"ATP synthase activity","type":"narrow"},{"name":"F(0)F(1)-ATPase activity","type":"narrow"},{"name":"F(1)-ATPase activity","type":"narrow"},{"name":"F(o)F(1)-ATPase activity","type":"narrow"},{"name":"F0F1-ATPase","type":"narrow"},{"name":"F1-ATPase","type":"narrow"},{"name":"FoF1-ATPase","type":"narrow"},{"name":"H+-transporting ATP synthase activity","type":"narrow"},{"name":"H+-transporting ATPase activity","type":"narrow"},{"name":"chloroplast ATPase activity","type":"narrow"},{"name":"hydrogen ion translocating A-type ATPase activity","type":"narrow"},{"name":"hydrogen ion translocating F-type ATPase activity","type":"narrow"},{"name":"hydrogen ion translocating V-type ATPase activity","type":"narrow"},{"name":"hydrogen ion transporting ATPase activity, rotational mechanism","type":"exact"},{"name":"hydrogen ion transporting two-sector ATPase activity","type":"narrow"},{"name":"mitochondrial ATPase activity","type":"narrow"}],"termid":"GO:0046961","terms_by_termid":{"GO:0046961":null}}


id: PBO:0029658
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_deadenylation-independent_decapping_of_nuclear-transcribed_mRNA","termid":"PBO:0029658"}


id: GO:0005893
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds interleukin-2; comprises alpha, beta, and gamma subunits.","definition_xrefs":["PMID:8266078","GOC:mah","PMID:3116143"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"interleukin-2 receptor complex","synonyms":[{"name":"IL-2 receptor complex","type":"exact"}],"termid":"GO:0005893"}


id: PBO:0084664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial 5'-3' exonuclease and sliding exonuclease; required for mitochondrial genome maintenance; distantly related to the RecB nuclease domain of bacterial RecBCD recombinases; may be regulated by the transcription factor Ace2","termid":"PBO:0084664"}


id: PBO:0088404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNP complex","termid":"PBO:0088404"}


id: PBO:0057267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 492","termid":"PBO:0057267"}


id: FYPO:0004245
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is normal (i.e. indistinguishable from wild type) during S phase of the mitotic cell cycle during a cellular response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein kinase activity","termid":"FYPO:0003075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"normal protein kinase activity during mitotic S phase during cellular response to DNA damage","synonyms":[{"name":"normal protein kinase activity during mitotic S phase in response to DNA damage","type":"related"}],"termid":"FYPO:0004245"}


id: MONDO:0041806
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tuberculosis disease caused by Mycobacterium tuberculosis isolate that is resistant to one or more of the antitubercular medications.","definition_xrefs":["PMID:24809736"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tuberculosis","termid":"MONDO:0018076"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"drug-resistant tuberculosis","secondary_identifiers":["SCTID:423709000","MEDGEN:61616","UMLS:C0206525"],"synonyms":[{"name":"drug resistant tuberculosis","type":"exact"}],"termid":"MONDO:0041806","xrefs":{"Monarch":{"xref_id":"0041806"}}}


id: FYPO:0004344
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a larger than normal proportion of cells in the population remains viable when cells the population are subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population viability","termid":"FYPO:0002057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"increased viability upon nitrogen starvation","synonyms":[{"name":"increased cell population viability upon nitrogen starvation","type":"exact"},{"name":"increased viability during nitrogen starvation","type":"exact"},{"name":"increased viability upon nitrogen depletion","type":"exact"},{"name":"increased viability upon nitrogen deprivation","type":"exact"}],"termid":"FYPO:0004344"}


id: PBO:0085255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peripheral membrane protein required for autophagic vesicle formation; also required for vesicle formation during pexophagy and the cytoplasm-to-vaucole targeting (Cvt) pathway; involved in Atg9p cycling between the phagophore assembly site and mitochondria; contains an APT1 domain that binds phosphatidylinositol-3-phosphate; essential for cell cycle progression from G2/M to G1 under nitrogen starvation; forms cytoplasmic foci upon DNA replication stress","termid":"PBO:0085255"}


id: PBO:0000288
data:
  {"annotation_feature_type":"gene","cv_name":"sequence_feature","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil","termid":"PBO:0000288"}


id: MONDO:0003184
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from epithelial cells of the trachea.","direct_ancestors":[{"relation_name":"is_a","term_name":"tracheal cancer","termid":"MONDO:0001407"},{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"trachea carcinoma","secondary_identifiers":["UMLS:C1744708","MEDGEN:315650","EFO:1000599","DOID:4876","NCIT:C9347"],"synonyms":[{"name":"Pancoast's tumour","type":"related"},{"name":"cancer of the trachea","type":"exact"},{"name":"cancer of trachea","type":"broad"},{"name":"carcinoma of the trachea","type":"exact"},{"name":"carcinoma of trachea","type":"exact"},{"name":"trachea cancer","type":"broad"},{"name":"trachea carcinoma","type":"exact"},{"name":"tracheal carcinoma","type":"exact"}],"termid":"MONDO:0003184","xrefs":{"Monarch":{"xref_id":"0003184"}}}


id: PBO:0001444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"substrate adaptor for cullin 3 ubiquitin ligase Btb3","termid":"PBO:0001444"}


id: PBO:0074183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC38A4 antisense RNA 1","termid":"PBO:0074183"}


id: PBO:0002122
data:
  {"annotation_feature_type":"gene","cv_name":"pathway","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"negative regulator of the Ras1-Byr2 signalling pathway, acting downstream of Ras1 and upstream of Byr2","termid":"PBO:0002122"}


id: GO:0102303
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 S-adenosyl-L-methionine + trans-resveratrol = 2 S-adenosyl-L-homocysteine + pterostilbene + 2 H+.","definition_xrefs":["GOC:pz","EC:2.1.1.240"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"resveratrol 3,5-O-dimethyltransferase activity","secondary_identifiers":["MetaCyc:RXN-12805","RHEA:32103"],"termid":"GO:0102303"}


id: PBO:0057759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1972-2","termid":"PBO:0057759"}


id: MONDO:0011281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital myasthenic syndrome caused by mutation(s) in the COLQ gene, encoding acetylcholinesterase collagenic tail peptide. It is inherited in an autosomal recessive manner.","definition_xrefs":["NCIT:C129304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital myasthenic syndrome","termid":"MONDO:0018940"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital myasthenic syndrome 5","secondary_identifiers":["MESH:C566415","NANDO:1201056","UMLS:C1864233","DOID:0110667","MEDGEN:400481","GARD:18210","OMIM:603034"],"synonyms":[{"name":"CMS Ic","type":"exact"},{"name":"CMS5","type":"exact"},{"name":"COLQ congenital myasthenic syndrome","type":"exact"},{"name":"Cms Ic","type":"related"},{"name":"Cms Ic, formerly","type":"related"},{"name":"EAD","type":"exact"},{"name":"Engel congenital myasthenic syndrome","type":"exact"},{"name":"congenital myasthenic syndrome 5","type":"exact"},{"name":"congenital myasthenic syndrome Engel type","type":"exact"},{"name":"congenital myasthenic syndrome caused by mutation in COLQ","type":"exact"},{"name":"congenital myasthenic syndrome type 5","type":"exact"},{"name":"congenital myasthenic syndrome type Ic","type":"exact"},{"name":"congenital myasthenic syndrome type Ic, formerly","type":"related"},{"name":"end plate acetylcholinesterase deficiency","type":"exact"},{"name":"endplate acetylcholinesterase deficiency","type":"related"},{"name":"myasthenic syndrome, congenital, 5","type":"related"},{"name":"myasthenic syndrome, congenital, Engel type","type":"related"},{"name":"myasthenic syndrome, congenital, type 5","type":"exact"}],"termid":"MONDO:0011281","xrefs":{"Monarch":{"xref_id":"0011281"}}}


id: GO:1990807
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the transfer of an acetyl group to a nitrogen atom on the amino acid of a protein.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete protein N-acetyltransferase activity (obsolete GO:1990807)","termid":"GO:1990807"}


id: MONDO:0017296
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Adult glycerol kinase deficiency (GKD) is an uncommon form of GKD diagnosed fortuitously and characterized by pseudohypertriglyceridemia in otherwise healthy adults.","definition_xrefs":["Orphanet:284414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isolated glycerol kinase deficiency","termid":"MONDO:0018459"},{"relation_name":"is_a","term_name":"disorder of gluconeogenesis","termid":"MONDO:0019225"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"glycerol kinase deficiency, adult form","secondary_identifiers":["UMLS:C5681013","GARD:17317","MEDGEN:1842796"],"termid":"MONDO:0017296","xrefs":{"Monarch":{"xref_id":"0017296"}}}


id: GO:0043008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein or protein complex using energy from ATP hydrolysis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"ATP-dependent protein binding","termid":"GO:0043008"}


id: GO:1901947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate.","definition_xrefs":["GOC:TermGenie","PMID:22027823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid metabolic process","termid":"GO:0006644"},{"relation_name":"is_a","term_name":"diterpenoid metabolic process","termid":"GO:0016101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate metabolic process","synonyms":[{"name":"5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate metabolism","type":"exact"}],"termid":"GO:1901947"}


id: RO:0008506
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"An interaction relationship describing organisms that often occur together at the same time and space or in the same environment.","direct_ancestors":[{"relation_name":"is_a","term_name":"ecologically_related_to","termid":"RO:0002321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"co-occurs","termid":"RO:0008506"}


id: GO:0019800
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a cross-link between peptide chains mediated by a chondroitin 4-sulfate glycosaminoglycan that originates from a typical O-glycosidic link to serine of one chain; the other chain is esterified, via the alpha-carbon of its C-terminal Asp, to C-6 of an internal N-acetylgalactosamine of the glycosaminoglycan chain.","definition_xrefs":["RESID:AA0219","PMID:1898736"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan (obsolete GO:0019800)","synonyms":[{"name":"peptide cross-linking via chondroitin 4-sulphate glycosaminoglycan","type":"exact"}],"termid":"GO:0019800"}


id: PBO:0084547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the PUF protein family; PUF family is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors","termid":"PBO:0084547"}


id: PBO:0112836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endomembrane system protein, FAR-17a/AIG1-like family protein, Aig1","termid":"PBO:0112836"}


id: MONDO:0800222
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pelvic organ prolapse, susceptibility to, 1","synonyms":[{"name":"PVOP1","type":"exact"}],"termid":"MONDO:0800222","xrefs":{"Monarch":{"xref_id":"0800222"}}}


id: FYPO:0003304
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which formation of the mitotic spindle midzone, the area in the center of the mitotic spindle where the spindle microtubules from opposite poles overlap, is abnormal.","definition_xrefs":["GO:0051256","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle elongation","termid":"FYPO:0000131"},{"relation_name":"is_a","term_name":"abnormal mitotic spindle assembly","termid":"FYPO:0000177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"part_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0000641","FYPO:0001320","FYPO:0000337","FYPO:0000002","FYPO:0005447","FYPO:0000054"],"is_obsolete":false,"name":"abnormal mitotic spindle midzone assembly","synonyms":[{"name":"abnormal mitotic spindle midzone assembly during vegetative growth","type":"exact"},{"name":"abnormal spindle midzone assembly during mitotic cell cycle","type":"related"},{"name":"abnormal spindle midzone assembly involved in mitosis","type":"exact"}],"termid":"FYPO:0003304"}


id: PBO:0000568
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.1.3.2","termid":"PBO:0000568"}


id: PBO:0041136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 19","termid":"PBO:0041136"}


id: PBO:0090857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane proline transmembrane transporter Put4","termid":"PBO:0090857"}


id: SO:0000458
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Germline genomic DNA including D-region with 5' UTR and 3' UTR, also designated as D-segment.","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_segment","termid":"SO:0000460"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D_gene_segment","synonyms":[{"name":"D gene","type":"exact"},{"name":"D-GENE","type":"exact"},{"name":"INSDC_feature:D_segment","type":"exact"}],"termid":"SO:0000458"}


id: PBO:0008071
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae KEX2","termid":"PBO:0008071"}


id: PBO:0027472
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cyclosporin_A_binding","termid":"PBO:0027472"}


id: GO:0042370
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of one or more phosphate groups from thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiamine diphosphate metabolic process","termid":"GO:0042357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0044281","GO:0006766","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"thiamine diphosphate dephosphorylation","synonyms":[{"name":"TPP dephosphorylation","type":"exact"},{"name":"thiamin diphosphate dephosphorylation","type":"exact"}],"termid":"GO:0042370"}


id: PBO:0082062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxyaspartate dehydratase; deaminates L-threo-3-hydroxyaspartate to form oxaloacetate and ammonia; required in the presence of hydroxyaspartate; highly similar to mouse serine racemase (Srr) but has no serine racemase activity","termid":"PBO:0082062"}


id: PBO:0052546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"killer cell lectin like receptor A1, pseudogene","termid":"PBO:0052546"}


id: PR:Q10359
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gmh3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,2-galactosyltransferase gmh3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.06c","synonyms":[{"name":"Spom972h-gmh3","type":"exact"}],"termid":"PR:Q10359"}


id: PBO:0031638
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_shmoo_formation","termid":"PBO:0031638"}


id: FYPO:0007634
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the acetylation of lysine at position 14 of histone H3 at ribosomal DNA occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K14 acetylation during vegetative growth","termid":"FYPO:0005310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"increased histone H3-K14 acetylation at rDNA during vegetative growth","synonyms":[{"name":"increased histone H3-K14 acetylation at rDNA during mitotic cell cycle","type":"related"},{"name":"increased histone H3K14 acetylation at rDNA during vegetative growth","type":"exact"},{"name":"increased histone H3K14 acetylation at ribosomal DNA during vegetative growth","type":"exact"}],"termid":"FYPO:0007634"}


id: PBO:0028200
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_DNA_damage_checkpoint_during_cellular_response_to_ionizing_radiation","termid":"PBO:0028200"}


id: MONDO:0008983
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosomal instability with tissue-specific radiosensitivity","secondary_identifiers":["MESH:C565848","OMIM:215510","UMLS:C1859091","MEDGEN:347797"],"synonyms":[{"name":"chromosomal instability with tissue-specific radiosensitivity","type":"exact"}],"termid":"MONDO:0008983","xrefs":{"Monarch":{"xref_id":"0008983"}}}


id: MONDO:0002874
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A germ cell tumor that arises from the testis and is characterized by the presence of one histologic component. This category includes seminoma, teratoma, embryonal carcinoma, yolk sac tumor, and trophoblastic tumor.","definition_xrefs":["NCIT:C39915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular germ cell tumor","termid":"MONDO:0010108"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testicular pure germ cell tumor","secondary_identifiers":["UMLS:C1514608","DOID:4087","MEDGEN:308089"],"synonyms":[{"name":"testicular Pure germ cell tumor","type":"exact"},{"name":"testicular Pure germ cell tumour","type":"exact"}],"termid":"MONDO:0002874","xrefs":{"Monarch":{"xref_id":"0002874"}}}


id: GO:0090152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a protein to a specific location in the mitochondrial membrane that contributes to mitochondrial fission.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of protein localization to mitochondrial membrane","termid":"GO:0090151"},{"relation_name":"part_of","term_name":"mitochondrial fission","termid":"GO:0000266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0061024","GO:0008150","GO:0007005","GO:0051179"],"is_obsolete":false,"name":"establishment of protein localization to mitochondrial membrane involved in mitochondrial fission","synonyms":[{"name":"establishment of protein localisation in mitochondrial membrane involved in mitochondrial fission","type":"exact"},{"name":"establishment of protein localization in mitochondrial membrane involved in mitochondrial fission","type":"exact"}],"termid":"GO:0090152"}


id: PBO:0087773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit","termid":"PBO:0087773"}


id: SO:0001537
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that changes one or more structural features.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_variant","termid":"SO:0001060"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structural_variant","secondary_identifiers":["http://vat.gersteinlab.org/formats.php"],"synonyms":[{"name":"Jannovar:structural_variant","type":"exact"},{"name":"VAT:svOverlap","type":"exact"},{"name":"structural variant","type":"related"}],"termid":"SO:0001537"}


id: PBO:0002937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF3i","termid":"PBO:0002937"}


id: PBO:0065687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pituitary tumor-transforming 3, pseudogene","termid":"PBO:0065687"}


id: GO:0090288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of cellular response to growth factor stimulus","termid":"GO:0090287"},{"relation_name":"negatively_regulates","term_name":"cellular response to growth factor stimulus","termid":"GO:0071363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellular response to growth factor stimulus","termid":"GO:0090288"}


id: PBO:0044136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTBP2 pseudogene 2","termid":"PBO:0044136"}


id: MONDO:0859380
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"episodic kinesigenic dyskinesia","termid":"MONDO:0044202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"}],"interesting_parent_ids":["MONDO:0003441"],"is_obsolete":false,"name":"episodic kinesigenic dyskinesia 3","secondary_identifiers":["UMLS:C5830280","OMIM:620245","MEDGEN:1840916","DOID:0060944"],"termid":"MONDO:0859380","xrefs":{"Monarch":{"xref_id":"0859380"}}}


id: PBO:0040135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating signal cointegrator 1 complex subunit 1","termid":"PBO:0040135"}


id: PBO:0059656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 22","termid":"PBO:0059656"}


id: PBO:0067500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 636, pseudogene","termid":"PBO:0067500"}


id: PBO:0065126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRKD3 divergent transcript","termid":"PBO:0065126"}


id: PBO:0005416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-like protein Arp6","termid":"PBO:0005416"}


id: GO:0030350
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins.","definition_xrefs":["PMID:3198610","PMID:8710843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA binding","termid":"GO:0003729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"iron-responsive element binding","synonyms":[{"name":"IRE binding","type":"exact"}],"termid":"GO:0030350"}


id: MONDO:1012400
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dilute coat color with neurological defects, non-human animal","termid":"MONDO:1011883"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dilute coat color with neurological defects, dog","secondary_identifiers":["OMIA:001501-9615"],"termid":"MONDO:1012400","xrefs":{"Monarch":{"xref_id":"1012400"}}}


id: GO:0052642
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: lysophosphatidic acid + H2O = phosphate + monoacylglycerol.","definition_xrefs":["PMID:20045079","PMID:7966317"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"lysophosphatidic acid phosphatase activity","secondary_identifiers":["MetaCyc:RXNQT-4375","Reactome:R-HSA-8878654","EC:3.1.3.106","RHEA:33155"],"synonyms":[{"name":"1-acyl-sn-glycerol 3-phosphatase activity","type":"exact"},{"name":"2-lysophosphatidate phosphatase activity","type":"exact"},{"name":"LPA phosphatase activity","type":"exact"},{"name":"lysophosphatidate phosphatase activity","type":"exact"}],"termid":"GO:0052642"}


id: SO:0001494
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A centromere DNA Element II (CDEII) is part a conserved region of the centromere, consisting of a consensus region that is AT-rich and ~ 75-100 bp in length.","definition_xrefs":["PMID:11222754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conserved_region","termid":"SO:0000330"},{"relation_name":"part_of","term_name":"point_centromere","termid":"SO:0001794"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere_DNA_Element_II","synonyms":[{"name":"CDEII","type":"exact"},{"name":"centromere DNA Element II","type":"exact"}],"termid":"SO:0001494"}


id: PBO:0088075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-specific protease that cleaves ubiquitin-protein fusions; involved in cell cycle progression through S phase; UBP7 has a paralog, UBP11, that arose from the whole genome duplication","termid":"PBO:0088075"}


id: MONDO:0007396
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Stanescu type dysostosis is a rare form of osteosclerosis.","definition_xrefs":["Orphanet:1798"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with increased bone density (obsolete MONDO:0019703)","termid":"MONDO:0019703"},{"relation_name":"is_a","term_name":"osteosclerosis","termid":"MONDO:0002933"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysostosis, Stanescu type","secondary_identifiers":["MESH:C562974","GARD:2016","MEDGEN:140931","OMIM:122900","SCTID:254124008","UMLS:C0432263"],"synonyms":[{"name":"Stanescu osteosclerosis","type":"exact"},{"name":"autosomal dominant osteosclerosis, Stanescu type","type":"exact"},{"name":"craniofacial dysostosis with diaphyseal hyperplasia","type":"related"},{"name":"craniofacial dysostosis-diaphyseal hyperplasia syndrome","type":"exact"},{"name":"dysostosis Stanescu type","type":"related"},{"name":"osteosclerosis, Stanescu type","type":"related"}],"termid":"MONDO:0007396","xrefs":{"Monarch":{"xref_id":"0007396"}}}


id: GO:0075276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of telium development, a process that leads to the formation of a teliospore-bearing sorus of the rust fungi.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of spore-bearing organ development","termid":"GO:0075260"},{"relation_name":"regulates","term_name":"telium development","termid":"GO:0075275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of telium development","termid":"GO:0075276"}


id: GO:0140728
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a GC-box, a DNA motif with the consensus sequence GGGCGG that is located upstream of the start point of eukaryotic transcription units. The GC-box may occur in multiple copies or in either orientation relative to the transcription start site.","definition_xrefs":["PMID:14701757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II cis-regulatory region sequence-specific DNA binding","termid":"GO:0000978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003677","GO:0003674","GO:0005488","GO:0000976"],"is_obsolete":false,"name":"GC-box binding","synonyms":[{"name":"GC box binding","type":"exact"},{"name":"GC rich promoter region binding","type":"broad"},{"name":"GC-rich region binding","type":"broad"},{"name":"GC_rich_promoter_region binding","type":"broad"}],"termid":"GO:0140728"}


id: GO:0034860
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-mercaptobenzothiazole + reduced acceptor = benzothiazole + hydrogen sulfide + oxidized acceptor.","definition_xrefs":["UM-BBD_reactionID:r1288"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-mercaptobenzothiazole desulfurase activity (obsolete GO:0034860)","termid":"GO:0034860"}


id: GO:0060552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of fructose 1,6-bisphosphate metabolism. Fructose 1,6-bisphosphate metabolism is the chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phosphate metabolic process","termid":"GO:0045937"},{"relation_name":"is_a","term_name":"regulation of fructose 1,6-bisphosphate metabolic process","termid":"GO:0060551"},{"relation_name":"positively_regulates","term_name":"fructose 1,6-bisphosphate metabolic process","termid":"GO:0030388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of fructose 1,6-bisphosphate metabolic process","termid":"GO:0060552"}


id: MONDO:0025353
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027","MONDO:0700092"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 90","secondary_identifiers":["MEDGEN:1786502","DOID:0070381","UMLS:C5542345","GARD:15286","OMIM:301058"],"synonyms":[{"name":"DEE90","type":"exact"},{"name":"developmental and epileptic encephalopathy 90","type":"exact"},{"name":"developmental and epileptic encephalopathy 90, X-linked recessive, X-linked dominant","type":"exact"}],"termid":"MONDO:0025353","xrefs":{"Monarch":{"xref_id":"0025353"}}}


id: PBO:0086926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pyruvate carboxylase isoform; cytoplasmic enzyme that converts pyruvate to oxaloacetate; differentially regulated than isoform Pyc2p; mutations in the human homolog are associated with lactic acidosis; PYC1 has a paralog, PYC2, that arose from the whole genome duplication","termid":"PBO:0086926"}


id: GO:0141127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters a Rab protein family-mediated signal transduction pathway in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:30181274","PMID:24251537","PMID:30893609"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host small GTPase-mediated signal transduction","termid":"GO:0044082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host Rab small GTPase signal transduction","synonyms":[{"name":"modulation by symbiont of host Rab protein mediated signal transduction","type":"exact"},{"name":"modulation by symbiont of host Rab protein signal transduction","type":"exact"},{"name":"modulation by symbiont of host Rab protein-mediated signal transduction","type":"exact"},{"name":"modulation of host Rab protein signal transduction by symbiont","type":"exact"},{"name":"modulation of host Rab protein signaling by symbiont","type":"exact"},{"name":"modulation of host Rab protein signalling by symbiont","type":"exact"},{"name":"perturbation of host Rab protein signal transduction","type":"exact"},{"name":"symbiont-mediated perturbation of host Rab protein signal transduction","type":"exact"}],"termid":"GO:0141127"}


id: GO:0019844
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The function of any microbial toxin that cannot be easily separated from the structure of the cell.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete endotoxin activity (obsolete GO:0019844)","synonyms":[{"name":"endotoxin activity","type":"exact"}],"termid":"GO:0019844"}


id: MONDO:0019123
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Continuous spikes and waves during sleep (CSWS) is a rare epileptic encephalopathy of childhood characterized by seizures, an electroencephalographic (EEG) pattern of electrical status epilepticus in sleep (ESES) and neurocognitive regression in at least 2 domains of development.","definition_xrefs":["Orphanet:725"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Landau-Kleffner syndrome","termid":"MONDO:0009509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"continuous spikes and waves during sleep","secondary_identifiers":["MEDGEN:1790601","UMLS:C5552731","GARD:1513","NANDO:1200601"],"synonyms":[{"name":"CSWS","type":"exact"},{"name":"CSWSS syndrome","type":"exact"},{"name":"EE-SWAS","type":"exact"},{"name":"EESWAS","type":"exact"},{"name":"ESES with language regression","type":"exact"},{"name":"LK syndrome","type":"exact"},{"name":"LKS","type":"exact"},{"name":"continuous slow spike and wave of sleep","type":"exact"},{"name":"continuous spike-wave during slow sleep syndrome","type":"exact"},{"name":"continuous spike-wave in sleep","type":"exact"},{"name":"continuous spikes and waves during slow-wave sleep","type":"exact"},{"name":"electrical status epilepticus of sleep","type":"exact"},{"name":"electrographic status epilepticus in sleep","type":"exact"},{"name":"electrographic status epilepticus of sleep","type":"exact"},{"name":"epileptic aphasia","type":"exact"},{"name":"epileptic encephalopathy with continuous spike-and-wave during slow sleep","type":"exact"},{"name":"epileptic encephalopathy with spike and wave activation in sleep","type":"exact"},{"name":"epileptic encephalopathy with spike-and-wave activation in sleep","type":"exact"},{"name":"eses index","type":"exact"}],"termid":"MONDO:0019123","xrefs":{"Monarch":{"xref_id":"0019123"}}}


id: PBO:0039595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anosmin 2, pseudogene","termid":"PBO:0039595"}


id: GO:0015889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin transport","termid":"GO:0051180"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"cobalamin transport","secondary_identifiers":["Reactome:R-HSA-9758881","Reactome:R-HSA-9758890"],"synonyms":[{"name":"vitamin B12 transport","type":"exact"}],"termid":"GO:0015889"}


id: FYPO:0004409
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to tetraplatin. Cells stop growing (and may die) at a concentration of tetraplatin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to tetraplatin","synonyms":[{"name":"hypersensitive to tetraplatin","type":"exact"},{"name":"sensitive to tetraplatin during mitotic cell cycle","type":"related"},{"name":"sensitive to tetraplatin during vegetative growth","type":"exact"}],"termid":"FYPO:0004409"}


id: GO:0050931
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a pigmented cell, such as a melanocyte.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"developmental pigmentation","termid":"GO:0048066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pigment cell differentiation","secondary_identifiers":["GO:0043357","GO:0043358"],"synonyms":[{"name":"chromatophore differentiation","type":"exact"},{"name":"pigmented cell differentiation","type":"exact"}],"termid":"GO:0050931"}


id: PBO:0011143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondria microtubule binder Mmb1","termid":"PBO:0011143"}


id: PR:Q12704
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA polymerase subunit gamma-1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10267:SF0","OMA:SCHPO04517","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase gamma (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC24B10.22","secondary_identifiers":["UniProtKB:Q12704"],"synonyms":[{"name":"Spom972h-POLG","type":"exact"},{"name":"mitochondrial DNA polymerase catalytic subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q12704"}


id: PBO:0011062
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"approver_email","termid":"PBO:0011062"}


id: PATO:0000352
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000352 metabolite composition value (obsolete PATO:0000352)","termid":"PATO:0000352"}


id: PBO:0091970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purine nucleoside transmembrane transporter","termid":"PBO:0091970"}


id: PBO:0027096
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_number_of_Rad52_foci_at_highly_transcribed_protein-coding_genes","termid":"PBO:0027096"}


id: MONDO:0020257
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oculomotor palsy that arises from lesions in the supranuclear pathways controlling extraocular movement.","direct_ancestors":[{"relation_name":"is_a","term_name":"oculomotor nerve paralysis","termid":"MONDO:0001309"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"supranuclear oculomotor palsy","secondary_identifiers":["MEDGEN:1842980","GARD:19546","UMLS:C5681698","Orphanet:98687"],"synonyms":[{"name":"conjugate gaze palsy","type":"related"},{"name":"gaze palsy","type":"related"},{"name":"supranuclear disorder of eye movement","type":"related"},{"name":"supranuclear eye movement disorder","type":"exact"},{"name":"supranuclear ocular palsy","type":"related"}],"termid":"MONDO:0020257","xrefs":{"Monarch":{"xref_id":"0020257"}}}


id: FYPO:0003886
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which endocytosis is abnormal. Endocytosis is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.","definition_xrefs":["PomBase:mah","GO:0006897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport","termid":"FYPO:0001720"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal endocytosis","synonyms":[{"name":"abnormal actin-mediated endocytosis","type":"exact"},{"name":"abnormal protein internalization","type":"narrow"},{"name":"endocytosis defects","type":"exact"},{"name":"endocytosis: abnormal","type":"related"}],"termid":"FYPO:0003886"}


id: MONDO:0033613
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spastic quadriplegic cerebral palsy","termid":"MONDO:0016215"},{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with progressive spasticity and brain white matter abnormalities","secondary_identifiers":["MESH:C567853","OMIM:619026","MEDGEN:1736667","Orphanet:641353","GARD:10447","UMLS:C5436628","OMIM:603513"],"synonyms":[{"name":"CPSQ1","type":"related"},{"name":"NEDSWMA","type":"exact"},{"name":"cerebral palsy spastic quadriplegic","type":"related"},{"name":"cerebral palsy, spastic quadriplegic, 1","type":"exact"},{"name":"cerebral palsy, spastic quadriplegic, type 1","type":"exact"},{"name":"infantile neurodegeneration-progressive spasticity-intellectual disability-white matter lesions syndrome","type":"exact"}],"termid":"MONDO:0033613","xrefs":{"Monarch":{"xref_id":"0033613"}}}


id: GO:0033468
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of CMP-keto-3-deoxy-D-manno-octulosonic acid, a substance composed of the acidic sugar 3-deoxy-D-manno-octulosonic acid in glycosidic linkage with cytidine monophosphate.","definition_xrefs":["GOC:mah","MetaCyc:PWY-1269"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-sugar biosynthetic process","termid":"GO:0009226"},{"relation_name":"is_a","term_name":"CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process","termid":"GO:0033467"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process","synonyms":[{"name":"CMP-KDO biosynthesis","type":"exact"},{"name":"CMP-KDO biosynthetic process","type":"exact"},{"name":"CMP-keto-3-deoxy-D-manno-octulosonic acid anabolism","type":"exact"},{"name":"CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthesis","type":"exact"},{"name":"CMP-keto-3-deoxy-D-manno-octulosonic acid formation","type":"exact"},{"name":"CMP-keto-3-deoxy-D-manno-octulosonic acid synthesis","type":"exact"},{"name":"CMP-ketodeoxyoctanoate biosynthetic process","type":"related"}],"termid":"GO:0033468"}


id: PBO:0116438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane magnesium transporter","termid":"PBO:0116438"}


id: PBO:0080518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASP family member 4, pseudogene","termid":"PBO:0080518"}


id: GO:0106343
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction glutarate + 2-oxoglutarate + O2 = (S)-2-hydroxyglutarate + succinate + CO2.","definition_xrefs":["PMID:30498244","RHEA:13821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"glutarate dioxygenase activity","secondary_identifiers":["EC:1.14.11.64"],"termid":"GO:0106343"}


id: RO:0002252
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"b connecting-branch-of s iff b is connected to s, and there exists some tree-like structure t such that the mereological sum of b plus s is either the same as t or a branching-part-of t.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_branching_relationship_with","termid":"RO:0002375"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"connecting_branch_of","termid":"RO:0002252"}


id: PBO:0082261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Amino acid transporter for valine, leucine, isoleucine, and tyrosine; low-affinity tryptophan and histidine transporter; overexpression confers FK506 and FTY720 resistance; protein abundance increases in response to DNA replication stress","termid":"PBO:0082261"}


id: GO:1903039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of leukocyte cell-cell adhesion.","definition_xrefs":["GOC:BHF","GO_REF:0000058","GOC:TermGenie","PMID:21106532","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-cell adhesion","termid":"GO:0022409"},{"relation_name":"is_a","term_name":"regulation of leukocyte cell-cell adhesion","termid":"GO:1903037"},{"relation_name":"positively_regulates","term_name":"leukocyte cell-cell adhesion","termid":"GO:0007159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of leukocyte cell-cell adhesion","synonyms":[{"name":"activation of leukocyte adhesion","type":"narrow"},{"name":"activation of leukocyte cell adhesion","type":"narrow"},{"name":"activation of leukocyte cell-cell adhesion","type":"narrow"},{"name":"positive regulation of leukocyte adhesion","type":"exact"},{"name":"positive regulation of leukocyte cell adhesion","type":"exact"},{"name":"up regulation of leukocyte adhesion","type":"exact"},{"name":"up regulation of leukocyte cell adhesion","type":"exact"},{"name":"up regulation of leukocyte cell-cell adhesion","type":"exact"},{"name":"up-regulation of leukocyte adhesion","type":"exact"},{"name":"up-regulation of leukocyte cell adhesion","type":"exact"},{"name":"up-regulation of leukocyte cell-cell adhesion","type":"exact"},{"name":"upregulation of leukocyte adhesion","type":"exact"},{"name":"upregulation of leukocyte cell adhesion","type":"exact"},{"name":"upregulation of leukocyte cell-cell adhesion","type":"exact"}],"termid":"GO:1903039"}


id: PBO:0001209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1688 family protein","termid":"PBO:0001209"}


id: GO:1904412
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cardiac ventricle development.","definition_xrefs":["PMID:19590510","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"cardiac ventricle development","termid":"GO:0003231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cardiac ventricle development","termid":"GO:1904412"}


id: PBO:0040794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta globin locus transcript 3","termid":"PBO:0040794"}


id: GO:0004601
data:
  {"annotated_genes":["SJAG_00141","SJAG_04823","SJAG_02515","SJAG_01199","SJAG_05181","SJAG_01292","SJAG_03166","SJAG_04632","SJAG_00489","SJAG_02630","SJAG_01216","SJAG_03623"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105870,106284,116224,116872],"is_not":false,"summary":null,"term":"GO:0004601"},{"annotations":[117789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004096"},{"annotations":[98776,97445,88882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004602"},{"annotations":[104799,116873],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051920"},{"annotations":[69771,108322,116875,94681,104536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008379"},{"annotations":[116876,108323],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140824"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a donor + a peroxide = an oxidized donor + 2 H2O.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antioxidant activity","termid":"GO:0016209"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on peroxide as acceptor","termid":"GO:0016684"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_00489":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_01292":null,"SJAG_02515":null,"SJAG_02630":null,"SJAG_03166":null,"SJAG_03623":null,"SJAG_04632":null,"SJAG_04823":null,"SJAG_05181":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"peroxidase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0016687","Reactome:R-HSA-140359","Reactome:R-HSA-209815","Reactome:R-HSA-209925","Reactome:R-HSA-3341296","Reactome:R-HSA-8855490","GO:0016693","GO:0016686","Reactome:R-HSA-8933635","GO:0016685","EC:1.11.1.-","KEGG_REACTION:R03532","Reactome:R-HSA-5631885","Reactome:R-HSA-6789126","Wikipedia:Peroxidase","Reactome:R-HSA-209840","Reactome:R-HSA-6789031","Reactome:R-HSA-2559639","Reactome:R-HSA-1222346","Reactome:R-HSA-209973","Reactome:R-HSA-2309773","Reactome:R-HSA-350901"],"synonyms":[{"name":"MPO","type":"related"},{"name":"bacterial catalase-peroxidase activity","type":"narrow"},{"name":"donor:hydrogen-peroxide oxidoreductase activity","type":"related"},{"name":"eosinophil peroxidase activity","type":"narrow"},{"name":"extensin peroxidase","type":"narrow"},{"name":"guaiacol peroxidase","type":"narrow"},{"name":"heme peroxidase","type":"narrow"},{"name":"horseradish peroxidase (HRP)","type":"narrow"},{"name":"japanese radish peroxidase","type":"narrow"},{"name":"lactoperoxidase activity","type":"narrow"},{"name":"myeloperoxidase activity","type":"narrow"},{"name":"oxyperoxidase activity","type":"related"},{"name":"peroxidase reaction","type":"exact"},{"name":"protoheme peroxidase","type":"narrow"},{"name":"pyrocatechol peroxidase","type":"narrow"},{"name":"scopoletin peroxidase","type":"narrow"},{"name":"secretory plant peroxidase activity","type":"narrow"},{"name":"thiocyanate peroxidase","type":"narrow"},{"name":"verdoperoxidase","type":"narrow"}],"termid":"GO:0004601","terms_by_termid":{"GO:0004096":null,"GO:0004601":null,"GO:0004602":null,"GO:0008379":null,"GO:0051920":null,"GO:0140824":null}}


id: MOD:00192
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-serine residue and a glycine residue to form L-serine 5-imidazolinone glycine.","definition_xrefs":["PubMed:1347277","RESID:AA0184","PubMed:9631087","ChEBI:21393"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5-imidazolinone ring crosslinked residues (Gly)","termid":"MOD:01882"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"},{"relation_name":"is_a","term_name":"crosslinked L-serine residue","termid":"MOD:02055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-serine 5-imidazolinone glycine","synonyms":[{"name":"(2-[(1R)-1-amino-2-hydroxyethyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid","type":"exact"},{"name":"2-[1-amino-2-hydroxyethyl]-1-carboxymethyl-1-imidazolin-5-one","type":"exact"},{"name":"4-methylidene-imidazole-5-one (MIO) active site","type":"exact"},{"name":"CROSSLNK 5-imidazolinone (Ser-Gly)","type":"exact"},{"name":"L-serine 5-imidazolinone glycine","type":"exact"},{"name":"green fluorescent protein chromophore","type":"exact"},{"name":"para-hydroxybenzylidene-imidazolidinone chromophore","type":"exact"},{"name":"seryl-5-imidazolinone glycine","type":"exact"}],"termid":"MOD:00192"}


id: PBO:0086073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that may interact with ribosomes; periodically expressed during the yeast metabolic cycle; phosphorylated in vitro by the mitotic exit network (MEN) kinase complex, Dbf2p/Mob1p","termid":"PBO:0086073"}


id: MOD:00012
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-asparagine.","definition_xrefs":["PubMed:9789001","ChEBI:29956","RESID:AA0003","DeltaMass:0","PubMed:15736973","PubMed:5681232","PubMed:6692818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparagine residue","synonyms":[{"name":"(2S)-2-amino-4-butanediamic acid","type":"exact"},{"name":"2,4-bis(azanyl)-4-oxobutanoic acid","type":"exact"},{"name":"2,4-diamino-4-oxobutanoic acid","type":"exact"},{"name":"2-amino-3-carbamoylpropanoic acid","type":"exact"},{"name":"2-amino-4-butanediamic acid","type":"exact"},{"name":"2-aminosuccinamic acid","type":"exact"},{"name":"2-aminosuccinic acid 4-amide","type":"exact"},{"name":"Asn","type":"exact"},{"name":"L-asparagine","type":"exact"},{"name":"alpha-amino-beta-carbamylpropionic acid","type":"exact"},{"name":"alpha-aminosuccinamic acid","type":"exact"},{"name":"aspartic acid 4-amide","type":"exact"},{"name":"aspartic acid beta-amide","type":"exact"},{"name":"beta-asparagine","type":"exact"}],"termid":"MOD:00012"}


id: MONDO:0007919
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hereditary lymphedema in which the cause of the disease is a mutation in the FLT4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphatic malformation","termid":"MONDO:0019313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"lymphatic malformation 1","secondary_identifiers":["DOID:0070210","SCTID:399889006","OMIM:153100","UMLS:C1704423","GARD:3328","MEDGEN:309963","Orphanet:79452","DOID:0070212"],"synonyms":[{"name":"FLT4 hereditary lymphedema","type":"exact"},{"name":"LMPH1A","type":"exact"},{"name":"Milroy disease","type":"exact"},{"name":"Nonne-Milroy disease","type":"exact"},{"name":"Nonne-Milroy lymphedema","type":"exact"},{"name":"Nonne-Milroy syndrome","type":"exact"},{"name":"Nonne’s syndrome","type":"exact"},{"name":"congenital hereditary lymphedema","type":"exact"},{"name":"congenital primary lymphedema","type":"exact"},{"name":"early onset lymphedema","type":"exact"},{"name":"hereditary lymphedema 1","type":"exact"},{"name":"hereditary lymphedema caused by mutation in FLT4","type":"exact"},{"name":"hereditary lymphedema type I","type":"exact"},{"name":"lymphedema, early-onset","type":"exact"},{"name":"lymphedema, hereditary, 1A","type":"exact"},{"name":"lymphedema, hereditary, type 1A","type":"exact"},{"name":"primary congenital lymphedema","type":"exact"}],"termid":"MONDO:0007919","xrefs":{"Monarch":{"xref_id":"0007919"}}}


id: PBO:0073579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shisa like 1","termid":"PBO:0073579"}


id: PBO:0062737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily E member 4","termid":"PBO:0062737"}


id: PBO:0089825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"18S rRNA dimethylase Cdh1","termid":"PBO:0089825"}


id: PBO:0085145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase; methylates adenine (m1A) of large subunit (LSU) rRNA at position 645; involved in pre-rRNA cleavage at site A2; mutation is synthetically lethal with gar1 mutation; deletion disrupts telomere maintenance by influencing expression of neighboring gene STN1; mammalian homolog nucleomethylin has been linked to nutrient availability signaling pathways and obesity","termid":"PBO:0085145"}


id: SO:0000582
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding an rRNA cleavage snoRNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snoRNA_primary_transcript","termid":"SO:0000232"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA_cleavage_snoRNA_primary_transcript","synonyms":[{"name":"rRNA cleavage snoRNA primary transcript","type":"exact"}],"termid":"SO:0000582"}


id: PBO:0084470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Master regulator of meiosis that is active only during meiotic events; activates transcription of early meiotic genes through interaction with Ume6p; degraded by the 26S proteasome following phosphorylation by Ime2p; transcription is negatively regulated in cis by the IRT1 long noncoding antisense RNA","termid":"PBO:0084470"}


id: PBO:0084373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lipoyl ligase; involved in the modification of mitochondrial enzymes by the attachment of lipoic acid groups","termid":"PBO:0084373"}


id: PBO:0065190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein Z, vitamin K dependent plasma glycoprotein","termid":"PBO:0065190"}


id: MONDO:1011532
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hyperadrenocorticism that occurs in domestic ferret.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperadrenocorticism, non-human animal","termid":"MONDO:1011403"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperadrenocorticism, domestic ferret","secondary_identifiers":["OMIA:000494-9669"],"termid":"MONDO:1011532","xrefs":{"Monarch":{"xref_id":"1011532"}}}


id: PBO:0050917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon induced transmembrane protein 3","termid":"PBO:0050917"}


id: GO:0075137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of the symbiont organism or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the redox environment in host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to host","termid":"GO:0075136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to host redox environment","synonyms":[{"name":"response of symbiont to host redox environment","type":"exact"}],"termid":"GO:0075137"}


id: MONDO:0016809
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, mitochondrial DNA maintenance syndrome characterized by cerebellar ataxia, sensory peripheral neuropathy, myoclonus, epilepsy, progressive cognitive impairment, late-onset ptosis and external ophthalmoplegia. Liver failure may also occur, most often in association with the use of antiepileptic drug sodium valproate.","definition_xrefs":["Orphanet:254881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory ataxic neuropathy, dysarthria, and ophthalmoparesis","termid":"MONDO:0011835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0004069","MONDO:0005244","MONDO:0005336","MONDO:0005066"],"is_obsolete":false,"name":"spinocerebellar ataxia with epilepsy","secondary_identifiers":["icd11.foundation:1238648682","UMLS:C1843852","MESH:C564395","GARD:17229","MEDGEN:334510"],"synonyms":[{"name":"MSCAE","type":"exact"},{"name":"SCAE","type":"exact"},{"name":"mitochondrial spinocerebellar ataxia with epilepsy","type":"exact"}],"termid":"MONDO:0016809","xrefs":{"Monarch":{"xref_id":"0016809"}}}


id: MONDO:0013136
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary hypotrichosis with recurrent skin vesicles is a very rare inherited hair loss disorder described in a family and characterized by sparse, fragile or absent hair on the scalp, eyebrows, eyelashes, axillae and rest of the body, associated with vesicle formation on various parts of the scalp and body which regularly burst and release watery fluid.","definition_xrefs":["Orphanet:217407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia","termid":"MONDO:0004907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hereditary hypotrichosis with recurrent skin vesicles","secondary_identifiers":["GARD:17124","OMIM:613102","UMLS:C2751292","MEDGEN:442697","MESH:C567751","SCTID:724350009"],"synonyms":[{"name":"hereditary hypotrichosis with recurrent skin vesicles","type":"exact"},{"name":"hypotrichosis and recurrent skin vesicles","type":"related"}],"termid":"MONDO:0013136","xrefs":{"Monarch":{"xref_id":"0013136"}}}


id: MOD:01460
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a methyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"alpha-amino methylated residue","synonyms":[{"name":"N2MeRes","type":"exact"}],"termid":"MOD:01460"}


id: GO:0004819
data:
  {"annotated_genes":["SJAG_04482"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108787],"is_not":false,"summary":null,"term":"GO:0004819"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln).","definition_xrefs":["EC:6.1.1.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04482":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0140098","GO:0003824","GO:0003674","GO:0140101","GO:0016874"],"is_obsolete":false,"name":"glutamine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:20121","MetaCyc:GLUTAMINE--TRNA-LIGASE-RXN","Reactome:R-HSA-379982","Reactome:R-HSA-380241"],"synonyms":[{"name":"GlnRS","type":"related"},{"name":"L-glutamine:tRNAGln ligase (AMP-forming)","type":"related"},{"name":"glutamine translase activity","type":"related"},{"name":"glutamine-tRNA synthetase activity","type":"related"},{"name":"glutaminyl ribonucleic acid","type":"related"},{"name":"glutaminyl-tRNA synthetase activity","type":"exact"},{"name":"glutaminyl-transfer RNA synthetase activity","type":"related"},{"name":"glutaminyl-transfer ribonucleate synthetase activity","type":"related"}],"termid":"GO:0004819","terms_by_termid":{"GO:0004819":null}}


id: GO:0072705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercaptoethanol stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to mercaptoethanol","termid":"GO:0072704"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to mercaptoethanol","synonyms":[{"name":"cellular response to 2-sulfanylethanol","type":"exact"}],"termid":"GO:0072705"}


id: GO:1904267
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of Schwann cell chemotaxis.","definition_xrefs":["PMID:16203995","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"is_a","term_name":"negative regulation of Schwann cell migration","termid":"GO:1900148"},{"relation_name":"is_a","term_name":"regulation of Schwann cell chemotaxis","termid":"GO:1904266"},{"relation_name":"negatively_regulates","term_name":"Schwann cell chemotaxis","termid":"GO:1990751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of Schwann cell chemotaxis","synonyms":[{"name":"down regulation of Schwann cell chemotaxis","type":"exact"},{"name":"down-regulation of Schwann cell chemotaxis","type":"exact"},{"name":"downregulation of Schwann cell chemotaxis","type":"exact"},{"name":"inhibition of Schwann cell chemotaxis","type":"narrow"}],"termid":"GO:1904267"}


id: MONDO:0035345
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare neurologic disease characterized by the chronic consequences of bilirubin toxicity in the globus pallidus, sub-thalamic nuclei, and other brain regions, after exposure to high levels of unconjugated bilirubin in the neonatal period. Symptoms begin after the acute phase of bilirubin encephalopathy in the first year of life, evolve slowly over several years, and include mild to severe extrapyramidal disturbances (especially dystonia and athetosis), auditory neuropathy spectrum disorder, and oculomotor and dental abnormalities.","definition_xrefs":["Orphanet:529808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic bilirubin encephalopathy","secondary_identifiers":["MEDGEN:1806573","UMLS:C5575229","GARD:22198"],"synonyms":[{"name":"BIND","type":"exact"},{"name":"Bilirubin-induced neurological dysfunction","type":"exact"},{"name":"CBE","type":"exact"},{"name":"KSD","type":"exact"},{"name":"Kernicterus spectrum disorder","type":"exact"}],"termid":"MONDO:0035345","xrefs":{"Monarch":{"xref_id":"0035345"}}}


id: PBO:0050065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helicase like transcription factor","termid":"PBO:0050065"}


id: PBO:0041185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"butyrophilin like 9","termid":"PBO:0041185"}


id: MONDO:0010275
data:
  {"annotated_genes":["SJAG_02016"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86058],"is_not":false,"summary":null,"term":"MONDO:0010275"}]},"cv_name":"mondo","definition":"A rare genetic neurological disorder characterized by the association of hypomyelinating leukodystrophy with spondylometaphyseal dysplasia. Patients present in infancy with absent or delayed ability to walk independently, slowly progressive motor deterioration, spasticity, ataxia, proximal weakness, and joint contractures. Additional manifestations include mild cognitive impairment, short stature, scoliosis, enlarged and deformed joints, dysarthria, nystagmus, visual defects, and mildly dysmorphic features, among others. Mode of inheritance is X-linked recessive.","definition_xrefs":["Orphanet:83629"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"spondyloepimetaphyseal dysplasia","termid":"MONDO:0100510"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02016":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondyloepimetaphyseal dysplasia, Bieganski type","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:4891","Orphanet:168448","UMLS:C1846148","icd11.foundation:1073330593","MEDGEN:335350","MESH:C567065","OMIM:300232","ICD10CM:G11.4","MESH:C536671"],"synonyms":[{"name":"H-SMD","type":"exact"},{"name":"LKMCD","type":"related"},{"name":"SEMD X-linked with mental deterioration","type":"related"},{"name":"SEMD, X-linked, with mental deterioration","type":"related"},{"name":"hypomyelination-spondyloepimetaphyseal dysplasia syndrome","type":"exact"},{"name":"leukoencephalopathy with metaphyseal chondrodysplasia","type":"related"},{"name":"leukoencephalopathy-SEMD syndrome","type":"exact"},{"name":"leukoencephalopathy-metaphyseal chondrodysplasia syndrome","type":"exact"},{"name":"spondyloepimetaphyseal dysplasia X-linked with mental deterioration","type":"related"},{"name":"spondyloepimetaphyseal dysplasia, X-linked, with hypomyelinating leukodystrophy, X-linked recessive","type":"exact"},{"name":"spondyloepimetaphyseal dysplasia, X-linked, with mental deterioration","type":"related"}],"termid":"MONDO:0010275","terms_by_termid":{"MONDO:0010275":null},"xrefs":{"Monarch":{"xref_id":"0010275"}}}


id: PBO:0031898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial aspartate aminotransferase Maa1 (predicted)","termid":"PBO:0031898"}


id: PBO:0088683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT 0 complex subunit, sorting receptor for ubiquitinated membrane proteins, Hse1","termid":"PBO:0088683"}


id: PBO:0067217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 284, pseudogene","termid":"PBO:0067217"}


id: MONDO:0004118
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A reactive inflammatory disorder affecting the bladder. It is characterized by the development of small cysts in the bladder wall. The cysts are lined by urothelial cells.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cystitis","termid":"MONDO:0006032"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystitis cystica","secondary_identifiers":["NCIT:C96230","SCTID:13285005","UMLS:C0152262","DOID:7138","ICD9:595.81","MEDGEN:472898"],"termid":"MONDO:0004118","xrefs":{"Monarch":{"xref_id":"0004118"}}}


id: PBO:0114431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NRGN antisense RNA 1","termid":"PBO:0114431"}


id: MONDO:0007894
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Leri pleonosteosis is characterized by broadening and deformity of the thumbs and great toes in a valgus position (a 'spade-shaped' appearance), flexion contracture of the interphalangeal joints, generalized limitation of joint mobility, short stature, and often mongoloid facies. Additional malformations include genu recurvatum, enlargement of the posterior neural arches of the cervical vertebrae, and thickening of the palmar and forearm fasciae. A few multigenerational families have been reported so far. The disease is inherited in an autosomal dominant manner.","definition_xrefs":["Orphanet:2900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"},{"relation_name":"is_a","term_name":"acromelic dysplasia","termid":"MONDO:0019695"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Leri pleonosteosis","secondary_identifiers":["GARD:88","MESH:C537118","UMLS:C1835450","OMIM:151200","MEDGEN:331978","NORD:1364"],"synonyms":[{"name":"Leri pleonosteosis","type":"exact"},{"name":"Leri type pleonosteosis","type":"related"},{"name":"Leri's pleonosteosis","type":"related"},{"name":"chromosome 8q22.1 DUPLICATION syndrome","type":"related"},{"name":"leri pleonosteosis chromosome duplication syndrome","type":"exact"},{"name":"pleonosteosis Leri type","type":"related"}],"termid":"MONDO:0007894","xrefs":{"Monarch":{"xref_id":"0007894"}}}


id: GO:0044560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant change in the activity of an ion channel in the bitten organism.","definition_xrefs":["GOC:jl","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of process in another organism","termid":"GO:0035738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in modulation of ion channel activity in another organism","synonyms":[{"name":"envenomation resulting in modulation of ion channel activity in other organism","type":"exact"},{"name":"envenomation resulting in regulation of ion channel activity in other organism","type":"exact"}],"termid":"GO:0044560"}


id: MONDO:0001886
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"prolapse of female genital organ","termid":"MONDO:0001592"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"midline cystocele","secondary_identifiers":["SCTID:423633003","UMLS:C1456248","ICD10CM:N81.11","ICD9:618.01","DOID:14131","MEDGEN:733480"],"termid":"MONDO:0001886","xrefs":{"Monarch":{"xref_id":"0001886"}}}


id: GO:0048935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a neuron whose cell body is located in the peripheral nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron development","termid":"GO:0048666"},{"relation_name":"part_of","term_name":"peripheral nervous system neuron differentiation","termid":"GO:0048934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral nervous system neuron development","termid":"GO:0048935"}


id: GO:2000834
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of androgen secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of steroid hormone secretion","termid":"GO:2000831"},{"relation_name":"regulates","term_name":"androgen secretion","termid":"GO:0035935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of androgen secretion","termid":"GO:2000834"}


id: FYPO:0005963
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of sodium ions into a cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sodium import","termid":"FYPO:0005962"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"decreased sodium import","synonyms":[{"name":"decreased cellular sodium import","type":"exact"},{"name":"decreased sodium import across plasma membrane","type":"exact"},{"name":"decreased sodium import during mitotic cell cycle","type":"related"},{"name":"decreased sodium import during vegetative growth","type":"exact"},{"name":"decreased sodium import into cell","type":"exact"},{"name":"decreased sodium ion import","type":"exact"},{"name":"reduced sodium import","type":"exact"}],"termid":"FYPO:0005963"}


id: PBO:0029684
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_iron_ion_starvation","termid":"PBO:0029684"}


id: PBO:0048319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 30","termid":"PBO:0048319"}


id: MONDO:0009696
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Juvenile myoclonic epilepsy is the most common hereditary idiopathic generalized epilepsy syndrome and is characterized by myoclonic jerks of the upper limbs on awakening, generalized tonic-clonic seizures manifesting during adolescence and triggered by sleep deprivation, alcohol intake, and cognitive activities, and typical absence seizures (30% of cases).","definition_xrefs":["Orphanet:307"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"adolescence-adult electroclinical syndrome","termid":"MONDO:0000415"},{"relation_name":"excluded_subClassOf","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"excluded_subClassOf","term_name":"familial partial epilepsy","termid":"MONDO:0017704"},{"relation_name":"excluded_subClassOf","term_name":"adolescent/adult-onset epilepsy syndrome","termid":"MONDO:0100030"},{"relation_name":"is_a","term_name":"idiopathic generalized epilepsy","termid":"MONDO:0005579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"juvenile myoclonic epilepsy","secondary_identifiers":["ICD9:345.10","OMIM:254770","MESH:D020190","MedDRA:10071082","DOID:4890","GARD:6808","icd11.foundation:1014397110","MEDGEN:78738","NCIT:C84796","OMIMPS:254770","UMLS:C0270853","OMIM:606904","SCTID:6204001"],"synonyms":[{"name":"EJM","type":"exact"},{"name":"JME","type":"exact"},{"name":"Janz syndrome","type":"narrow"},{"name":"epilepsy, myoclonic juvenile","type":"exact"},{"name":"juvenile myoclonus epilepsy","type":"exact"},{"name":"myoclonic epilepsy, juvenile","type":"exact"},{"name":"myoclonic epilepsy, juvenile, 1","type":"exact"},{"name":"myoclonic epilepsy, juvenile, susceptibility to, 1","type":"narrow"},{"name":"petit mal, impulsive","type":"narrow"}],"termid":"MONDO:0009696","xrefs":{"Monarch":{"xref_id":"0009696"}}}


id: SO:0100001
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of a peptide that is involved in a biochemical function.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_motif","termid":"SO:0001067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"biochemical_region_of_peptide","synonyms":[{"name":"biochemical motif","type":"exact"},{"name":"biochemical region of peptide","type":"exact"},{"name":"biochemical_region","type":"related"}],"termid":"SO:0100001"}


id: PATO:0001548
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape.","direct_ancestors":[{"relation_name":"is_a","term_name":"quality of a substance","termid":"PATO:0002198"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quality of a liquid","synonyms":[{"name":"liquidity","type":"exact"}],"termid":"PATO:0001548"}


id: PATO:0002513
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity.","definition_xrefs":["PATOC:EJS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oblique to","termid":"PATO:0002513"}


id: GO:0031088
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding the platelet dense granule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule membrane","termid":"GO:0030667"},{"relation_name":"part_of","term_name":"platelet dense granule","termid":"GO:0042827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"platelet dense granule membrane","termid":"GO:0031088"}


id: FYPO:0004303
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a phosphatase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal phosphatase activity","termid":"FYPO:0004302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0000661","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"abolished phosphatase activity","synonyms":[{"name":"phosphatase activity abolished","type":"exact"}],"termid":"FYPO:0004303"}


id: PBO:0064227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase C gamma 1","termid":"PBO:0064227"}


id: GO:0099553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling between presynapse and postsynapse, via the release and reception of endocannabinoid ligands, that modulates the synaptic transmission properties of the synapse.","definition_xrefs":["GOC:dos","PMID:21531987"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans-synaptic signaling by endocannabinoid","termid":"GO:0099542"},{"relation_name":"is_a","term_name":"trans-synaptic signaling by lipid, modulating synaptic transmission","termid":"GO:0099552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"trans-synaptic signaling by endocannabinoid, modulating synaptic transmission","termid":"GO:0099553"}


id: FYPO:0000978
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing mevastatin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0002060","FYPO:0002057","FYPO:0000003","FYPO:0000257","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on mevastatin","synonyms":[{"name":"normal cell population growth on compactin","type":"exact"},{"name":"normal cell population growth on mevastatin","type":"exact"},{"name":"normal vegetative cell population growth on mevastatin","type":"exact"}],"termid":"FYPO:0000978"}


id: PBO:0079573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin B pseudogene 5","termid":"PBO:0079573"}


id: FYPO:0007268
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cortical endoplasmic reticulum (ER) remodeling occurs to a lower extent than normal. Cortical ER remodeling is the dynamic spatial rearrangement of ER tubules near the cell cortex.","definition_xrefs":["PomBase:mah","PMID:32023460"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cortical endoplasmic reticulum organization","termid":"FYPO:0007571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased cortical endoplasmic reticulum remodeling","synonyms":[{"name":"decreased cortical ER remodeling","type":"exact"},{"name":"decreased cortical endoplasmic reticulum remodeling during mitotic cell cycle","type":"related"},{"name":"decreased cortical endoplasmic reticulum remodeling during vegetative growth","type":"exact"},{"name":"reduced cortical endoplasmic reticulum remodeling","type":"exact"}],"termid":"FYPO:0007268"}


id: GO:0102988
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (9Z,12Z)-hexadecadienoyl-CoA + O2 + a reduced electron acceptor = 9,12,15-cis-hexadecatrienoyl-CoA + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["EC:1.14.19.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"9,12-cis-hexadecadienoic acid delta 15 desaturase activity","secondary_identifiers":["MetaCyc:RXN-9617","RHEA:46232"],"termid":"GO:0102988"}


id: MOD:00007
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a selenium atom for a sulfur atom.","definition_xrefs":["Unimod:162","PubMed:12148805"],"direct_ancestors":[{"relation_name":"is_a","term_name":"selenium containing residue","termid":"MOD:00745"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenium substitution for sulfur","synonyms":[{"name":"Delta:S(-1)Se(1)","type":"related"},{"name":"Se(S)Res","type":"exact"},{"name":"Selenium replaces sulphur","type":"related"}],"termid":"MOD:00007"}


id: FYPO:0005938
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id: PBO:0002107
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id: PBO:0108979
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPMIP3 pseudogene 1","termid":"PBO:0108979"}


id: MONDO:0007675
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id: GO:1901119
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id: GO:1900788
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id: PBO:0081432
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 285B, pseudogene","termid":"PBO:0081432"}


id: GO:1905494
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id: PBO:0029356
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id: GO:0042807
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane-enclosed sac that takes up most of the volume of a mature plant cell. Functions include storage, separation of toxic byproducts, and cell growth determination.","definition_xrefs":["Wikipedia:Vacuole","ISBN:9780815341116"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant-type vacuole","termid":"GO:0000325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005773"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005773","GO:0005575"],"is_obsolete":false,"name":"central vacuole","termid":"GO:0042807"}


id: PBO:0080988
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBTB20 antisense RNA 4","termid":"PBO:0080988"}


id: PBO:0005489
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex subunit Sec5 (predicted)","termid":"PBO:0005489"}


id: GO:0043769
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id: PBO:0004156
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id: MONDO:0014360
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id: PBO:0035697
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id: MONDO:0020686
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id: MONDO:0018230
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id: PBO:0005669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic aspartate-tRNA ligase Drs1 (predicted)","termid":"PBO:0005669"}


id: PBO:0059234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L4","termid":"PBO:0059234"}


id: MONDO:0958240
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  {"annotated_genes":["SJAG_01571"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86599],"is_not":false,"summary":null,"term":"MONDO:0958240"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neurodevelopmental disorder","termid":"MONDO:0700092"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01571":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with hyperkinetic movements, seizures, and structural brain abnormalities","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620732"],"termid":"MONDO:0958240","terms_by_termid":{"MONDO:0958240":null},"xrefs":{"Monarch":{"xref_id":"0958240"}}}


id: MONDO:0013125
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"CLAPO syndrome is a newly described syndrome consisting of capillary malformation of the lower lip (C), lymphatic malformation of the face and neck (L), asymmetry of face and limbs (A) and partial or generalized overgrowth (O).","definition_xrefs":["Orphanet:168984"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"overgrowth syndrome","termid":"MONDO:0019716"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLAPO syndrome","secondary_identifiers":["icd11.foundation:415642712","GARD:17044","MEDGEN:416522","OMIM:613089","UMLS:C2751313","SCTID:717765001","MESH:C567763"],"synonyms":[{"name":"CLAPO syndrome, somatic","type":"exact"},{"name":"Clapo","type":"related"},{"name":"Lopez-Gutierrez syndrome","type":"related"},{"name":"capillary malformation of the LOWER LIP, lymphatic malformation of face and neck, asymmetry of face and limbs, and partial/generalized overgrowth","type":"related"}],"termid":"MONDO:0013125","xrefs":{"Monarch":{"xref_id":"0013125"}}}


id: PBO:0071662
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37a pseudogene 3","termid":"PBO:0071662"}


id: PBO:0044265
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-X-C motif chemokine ligand 3","termid":"PBO:0044265"}


id: PBO:0065915
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RABGEF1 pseudogene 1","termid":"PBO:0065915"}


id: GO:0051309
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which paired chromosomes are physically detached from each other during female meiosis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female meiosis chromosome segregation","termid":"GO:0016321"},{"relation_name":"is_a","term_name":"meiotic chromosome separation","termid":"GO:0051307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0140013","GO:0008150"],"is_obsolete":false,"name":"female meiosis chromosome separation","synonyms":[{"name":"chromosome separation during female meiosis","type":"exact"},{"name":"female meiosis chromosome resolution","type":"exact"}],"termid":"GO:0051309"}


id: PBO:0083245
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; extensive overlap with PGA2/YNL149C, an uncharacterized gene with a proposed role in protein trafficking","termid":"PBO:0083245"}


id: MONDO:0001434
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spondylitis","termid":"MONDO:0003937"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inflammatory spondylopathy","secondary_identifiers":["ICD9:720.9","DOID:12105","MEDGEN:215416","ICD9:720.81","SCTID:202649003","ICD9:720.89","UMLS:C0949690"],"synonyms":[{"name":"inflammatory spondylopathies in disease EC","type":"exact"},{"name":"inflammatory spondylopathies in disease classified elsewhere","type":"narrow"},{"name":"inflammatory spondylopathy in disease classified elsewhere","type":"narrow"}],"termid":"MONDO:0001434","xrefs":{"Monarch":{"xref_id":"0001434"}}}


id: PBO:0084278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein, member of the p24 family; forms complex with Erp3p, Erp5p, and Emp24p; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription","termid":"PBO:0084278"}


id: MONDO:0004568
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An ileus caused by abdominal or pelvic surgery, infections, disorders that affect the muscles and nerves, and medications. Signs and symptoms include those of intestinal obstruction.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ileus","termid":"MONDO:0004567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"paralytic ileus","secondary_identifiers":["MEDGEN:18293","MESH:D007418","UMLS:C0030446","DOID:8442","HP:0002590","SCTID:55525008","NCIT:C93045","ICD9:560.1","icd11.foundation:1868011045"],"synonyms":[{"name":"paralytic ileus","type":"exact"},{"name":"paralytic ileus (disease)","type":"exact"}],"termid":"MONDO:0004568","xrefs":{"Monarch":{"xref_id":"0004568"}}}


id: PBO:0048593
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth hormone 2","termid":"PBO:0048593"}


id: PBO:0041994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCDC39 antisense RNA 1","termid":"PBO:0041994"}


id: GO:0019084
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The viral transcription that takes place after early transcription in the viral life cycle, and which involves the transcription of genes required for replication.","definition_xrefs":["GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral transcription","termid":"GO:0019083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"middle viral transcription","synonyms":[{"name":"(delayed) early viral mRNA transcription","type":"related"}],"termid":"GO:0019084"}


id: PATO:0000183
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  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000183 limb tone (obsolete PATO:0000183)","termid":"PATO:0000183"}


id: GO:0030650
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving peptides with antibiotic activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide metabolic process","termid":"GO:0006518"},{"relation_name":"is_a","term_name":"antibiotic metabolic process","termid":"GO:0016999"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptide antibiotic metabolic process","synonyms":[{"name":"peptide antibiotic metabolism","type":"exact"}],"termid":"GO:0030650"}


id: GO:0071881
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway initiated by a ligand binding to an adrenergic receptor, and ending with the regulation of a downstream cellular process.","definition_xrefs":["GOC:mah","GOC:BHF","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway","termid":"GO:0007193"},{"relation_name":"is_a","term_name":"adrenergic receptor signaling pathway","termid":"GO:0071875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"adenylate cyclase-inhibiting adrenergic receptor signaling pathway","synonyms":[{"name":"adrenergic receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"adrenergic receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway","type":"related"},{"name":"inhibition of adenylate cyclase activity by adrenergic receptor signalling pathway","type":"related"}],"termid":"GO:0071881"}


id: MONDO:0013755
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  {"annotated_genes":["SJAG_00120"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86114],"is_not":false,"summary":null,"term":"MONDO:0013755"}]},"cv_name":"mondo","definition":"Any de Barsy syndrome in which the cause of the disease is a mutation in the PYCR1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"de Barsy syndrome","termid":"MONDO:0017569"},{"relation_name":"is_a","term_name":"inherited cutis laxa","termid":"MONDO:0100237"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00120":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0019303"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0019303","MONDO:0006025","MONDO:0005328"],"is_obsolete":false,"name":"PYCR1-related de Barsy syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:293633","DOID:0070138","UMLS:C3280799","GARD:17340","OMIM:614438","MEDGEN:482429"],"synonyms":[{"name":"ARCL3B","type":"exact"},{"name":"De Barsy syndrome B","type":"exact"},{"name":"PYCR1 de Barsy syndrome","type":"exact"},{"name":"PYCR1 deficiency","type":"exact"},{"name":"autosomal recessive cutis laxa type IIIB","type":"related"},{"name":"cutis laxa, autosomal recessive, type 3B","type":"related"},{"name":"cutis laxa, autosomal recessive, type IIIB","type":"related"},{"name":"de Barsy syndrome caused by mutation in PYCR1","type":"exact"},{"name":"pyrroline-5-carboxylate reductase 1 deficiency","type":"exact"}],"termid":"MONDO:0013755","terms_by_termid":{"MONDO:0013755":null},"xrefs":{"Monarch":{"xref_id":"0013755"}}}


id: GO:0075236
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates, maintains or increases the frequency, rate or extent of zoospore movement on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of zoospore movement on or near host (obsolete GO:0075236)","termid":"GO:0075236"}


id: PBO:0076090
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STIP1 homology and U-box containing protein 1","termid":"PBO:0076090"}


id: PBO:0001888
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  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"identical paralog","termid":"PBO:0001888"}


id: PBO:0087131
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of REC107 pre-mRNA; Nam8p regulon embraces the meiotic pre-mRNAs of REC107, HFM1, AMA1 SPO22 and PCH2; the putative RNA binding domains RRM2 and RRM3 are required for Nam8p meiotic function","termid":"PBO:0087131"}


id: GO:0002236
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a misfolded protein stimulus is received and converted into a molecular signal.","definition_xrefs":["PMID:15226511","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of chemical stimulus","termid":"GO:0009593"},{"relation_name":"is_a","term_name":"response to misfolded protein","termid":"GO:0051788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of misfolded protein","termid":"GO:0002236"}


id: PBO:0077417
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 151B","termid":"PBO:0077417"}


id: MONDO:1011308
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital nervous system disorder that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital nervous system disorder, non-human animal","termid":"MONDO:1011308","xrefs":{"Monarch":{"xref_id":"1011308"}}}


id: PBO:0034577
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-aggregated_actin_cortical_patches","termid":"PBO:0034577"}


id: GO:0090131
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the population of cells that make up a mesenchyme undergo directed movement.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue migration","termid":"GO:0090130"},{"relation_name":"part_of","term_name":"mesenchyme morphogenesis","termid":"GO:0072132"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchyme migration","termid":"GO:0090131"}


id: PBO:0086946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Receptor protein for the cytoplasm-to-vacuole targeting (Cvt) pathway; delivers cargo proteins aminopeptidase I (Ape1p) and alpha-mannosidase (Ams1p) to the phagophore assembly site for packaging into Cvt vesicles; interaction with Atg19p during the Cvt pathway requires phosphorylation by Hrr25p","termid":"PBO:0086946"}


id: GO:0103102
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose + 8-methylthiooctylhydroximate = H+ + 7-methylthioheptyldesulfoglucosinolate + UDP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete UDP-glucose:8-methylthiooctylhydroximate S-glucosyltransferase activity (obsolete GO:0103102)","termid":"GO:0103102"}


id: PBO:0054367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1761","termid":"PBO:0054367"}


id: MONDO:0032776
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"hearing loss, autosomal recessive 99","secondary_identifiers":["MEDGEN:1678930","DOID:0111634","GARD:22663","OMIM:618481","UMLS:C4760579"],"synonyms":[{"name":"DFNB99","type":"narrow"},{"name":"deafness, autosomal recessive 99","type":"narrow"}],"termid":"MONDO:0032776","xrefs":{"Monarch":{"xref_id":"0032776"}}}


id: PBO:0043305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmegin","termid":"PBO:0043305"}


id: GO:0008575
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. The hydrolysis of ATP for channel gating and polypeptide unfolding before proteolysis in the proteasome. Six ATPase subunits are present in the regulatory particle (RP) of 26S proteasome.","definition_xrefs":["EC:3.6.4.8"],"gene_count":0,"genotype_count":0,"name":"obsolete proteasome ATPase activity (obsolete GO:0008575)","synonyms":[{"name":"proteasome ATPase activity","type":"exact"}],"termid":"GO:0008575"}


id: PBO:0082329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex; is essential for pre-60S maturation and release of several preribosome maturation factors; releases Rlp24p from purified pre-60S particles in vitro; target of the ribosomal biosynthesis inhibitor diazaborine; may be involved in degradation of aberrant mRNAs","termid":"PBO:0082329"}


id: PBO:0078255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 29/OR9-2 (non-functional)","termid":"PBO:0078255"}


id: SO:0000796
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE.","definition_xrefs":["FB:mc"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"clone","termid":"SO:0000151"},{"relation_name":"has_quality","term_name":"transgenic","termid":"SO:0000781"},{"relation_name":"is_a","term_name":"transposable_element","termid":"SO:0000101"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transgenic_transposable_element","synonyms":[{"name":"transgenic transposable element","type":"exact"}],"termid":"SO:0000796"}


id: MOD:00556
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other","definition_xrefs":["Unimod:205"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acrolein addition +94","synonyms":[{"name":"Acrolein addition +94","type":"related"},{"name":"Delta:H(6)C(6)O(1)","type":"related"}],"termid":"MOD:00556"}


id: PBO:0058898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 12116","termid":"PBO:0058898"}


id: PBO:0012828
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-present_during","termid":"PBO:0012828"}


id: GO:2000292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of defecation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of digestive system process","termid":"GO:0044058"},{"relation_name":"is_a","term_name":"regulation of excretion","termid":"GO:0044062"},{"relation_name":"regulates","term_name":"defecation","termid":"GO:0030421"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of defecation","termid":"GO:2000292"}


id: PBO:0070651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 22","termid":"PBO:0070651"}


id: PBO:0053116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipocalin 2","termid":"PBO:0053116"}


id: GO:0006386
data:
  {"annotated_genes":["SJAG_00637","SJAG_02242","SJAG_03761","SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92505,97646,99385,115487],"is_not":false,"summary":null,"term":"GO:0006386"}]},"cv_name":"biological_process","definition":"A transcription termination process that completes the production of a primary RNA polymerase II transcript. RNA polymerase III has an intrinsic ability to terminate transcription upon incorporation of at least 4 contiguous U residues.","definition_xrefs":["GOC:mah","PMID:12944462","PMID:27371117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription termination","termid":"GO:0006353"},{"relation_name":"part_of","term_name":"transcription by RNA polymerase III","termid":"GO:0006383"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00637":null,"SJAG_02242":null,"SJAG_03689":null,"SJAG_03761":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006351"],"is_obsolete":false,"name":"termination of RNA polymerase III transcription","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0019225","Reactome:R-HSA-73980"],"synonyms":[{"name":"RNA polymerase III transcription termination","type":"exact"},{"name":"RNA polymerase III transcription termination factor activity","type":"related"},{"name":"transcription termination from Pol III promoter","type":"exact"},{"name":"transcription termination from RNA polymerase III promoter","type":"exact"}],"termid":"GO:0006386","terms_by_termid":{"GO:0006386":null}}


id: GO:0072016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a glomerular parietal epithelial cell over time, from its formation to the mature structure. Glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular epithelial cell development","termid":"GO:0072310"},{"relation_name":"part_of","term_name":"glomerular parietal epithelial cell differentiation","termid":"GO:0072139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glomerular parietal epithelial cell development","synonyms":[{"name":"Bowman's capsule development","type":"exact"}],"termid":"GO:0072016"}


id: MONDO:0008468
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spondyloarthropathy, susceptibility to","termid":"MONDO:0024512"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spondyloarthropathy, susceptibility to, 2","secondary_identifiers":["OMIM:183840","UMLS:C1866738","DOID:0080604","MEDGEN:355791"],"synonyms":[{"name":"SPDA2","type":"related"},{"name":"spondyloarthropathy, susceptibility to, 2","type":"exact"}],"termid":"MONDO:0008468","xrefs":{"Monarch":{"xref_id":"0008468"}}}


id: PBO:0082075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-3' exonuclease and flap-endonuclease; involved in recombination, double-strand break repair, MMS2 error-free branch of the post replication (PRR) pathway and DNA mismatch repair; role in telomere maintenance; member of the Rad2p nuclease family, with conserved N and I nuclease domains; relative distribution to the nucleus increases upon DNA replication stress; EXO1 has a paralog, DIN7, that arose from the whole genome duplication","termid":"PBO:0082075"}


id: PBO:0000943
data:
  {"annotation_feature_type":"gene","cv_name":"sequence_feature","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein mitochondrial signal sequence","termid":"PBO:0000943"}


id: GO:0075319
data:
  {"annotated_genes":["SJAG_03501"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117728],"is_not":false,"summary":null,"term":"GO:0075319"}]},"cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of ascus development, a saclike structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of spore-bearing organ development","termid":"GO:0075261"},{"relation_name":"is_a","term_name":"regulation of ascus development","termid":"GO:0075318"},{"relation_name":"positively_regulates","term_name":"ascus development","termid":"GO:0075317"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03501":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of ascus development","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0075319","terms_by_termid":{"GO:0075319":null}}


id: PBO:0041607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase activity and apoptosis inhibitor 1","termid":"PBO:0041607"}


id: MONDO:0000670
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An agnosia that is a loss of the ability to perceive any auditory information but whose hearing is intact.","definition_xrefs":["DOID:0060140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auditory agnosia","termid":"MONDO:0000667"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cortical deafness","secondary_identifiers":["UMLS:C0392704","MEDGEN:98233"],"termid":"MONDO:0000670","xrefs":{"Monarch":{"xref_id":"0000670"}}}


id: FYPO:0000324
data:
  {"alleles_by_uniquename":{"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[118648,118649,118650],"is_not":false,"summary":null,"term":"FYPO:0000324"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the onset of anaphase of the mitotic cell cycle begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"increased duration of mitotic M phase","termid":"FYPO:0000274"},{"relation_name":"is_a","term_name":"delayed cell cycle phase transition","termid":"FYPO:0000409"},{"relation_name":"is_a","term_name":"abnormal mitotic metaphase/anaphase transition","termid":"FYPO:0006477"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01956":null,"SJAG_03351":null,"SJAG_03575":null},"genotype_count":3,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","references_by_uniquename":{"PMID:23786411":null},"secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"single_locus_annotated_genes":["SJAG_03575","SJAG_01956","SJAG_03351"],"single_locus_genotype_uniquenames":["apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"cell cycle passage through the metaphase-anaphase transition: delayed","type":"related"},{"name":"delayed cell cycle passage through mitotic metaphase-anaphase transition","type":"exact"},{"name":"delayed mitotic anaphase B","type":"narrow"},{"name":"delayed mitotic metaphase/anaphase transition","type":"exact"},{"name":"delayed onset of anaphase B during mitotic cell cycle","type":"narrow"},{"name":"delayed onset of mitotic anaphase","type":"exact"},{"name":"delayed onset of mitotic anaphase B","type":"narrow"},{"name":"delayed onset of mitotic anaphase B during vegetative growth","type":"narrow"},{"name":"increased duration of metaphase during mitosis","type":"related"},{"name":"increased duration of mitotic metaphase","type":"related"},{"name":"metaphase/anaphase transition delay during mitotic cell cycle","type":"exact"},{"name":"mitotic anaphase delay","type":"exact"},{"name":"mitotic cell cycle delay at metaphase/anaphase transition","type":"exact"},{"name":"mitotic metaphase/anaphase transition delay during vegetative growth","type":"exact"},{"name":"transient cell cycle arrest in mitotic metaphase","type":"exact"}],"termid":"FYPO:0000324","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0000324":null}}


id: PBO:0027333
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_level_during_cellular_response_to_menadione","termid":"PBO:0027333"}


id: GO:0019279
data:
  {"annotated_genes":["SJAG_02290","SJAG_03671"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113428],"is_not":false,"summary":null,"term":"GO:0019279"},{"annotations":[100168],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019280"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including L-homoserine, via the intermediate cystathionine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"homoserine metabolic process","termid":"GO:0009092"},{"relation_name":"is_a","term_name":"'de novo' L-methionine biosynthetic process","termid":"GO:0071266"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02290":null,"SJAG_03671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520","GO:0006790"],"is_obsolete":false,"name":"L-methionine biosynthetic process from L-homoserine via cystathionine","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:HOMOSER-METSYN-PWY"],"synonyms":[{"name":"L-methionine anabolism from L-homoserine via cystathionine","type":"exact"},{"name":"L-methionine formation from L-homoserine via cystathionine","type":"exact"},{"name":"L-methionine synthesis from L-homoserine via cystathionine","type":"exact"},{"name":"methionine biosynthetic process from L-homoserine via cystathionine","type":"exact"}],"termid":"GO:0019279","terms_by_termid":{"GO:0019279":null,"GO:0019280":null}}


id: MONDO:0021136
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease or disorder is defined as rare in Europe when it affects fewer than 1 in 2000. A disease or disorder is defined as rare in the USA when it affects fewer than 200,000 persons at any given time. Here we take the European definition to be consistent with Orphanet.","direct_ancestors":[{"relation_name":"is_a","term_name":"rare or common","termid":"MONDO:0021135"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rare","synonyms":[{"name":"rare (European definition)","type":"exact"}],"termid":"MONDO:0021136","xrefs":{"Monarch":{"xref_id":"0021136"}}}


id: FYPO:0007376
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a region of the genome that is normally stably assembled and maintained as heterochromatin over successive generations entirely loses heterochromatic structure.","definition_xrefs":["PomBase:mah","PMID:29899117","PMID:31278118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal epigenetic heterochromatin inheritance","termid":"FYPO:0007477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0007477"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0007477","FYPO:0001985"],"is_obsolete":false,"name":"abolished epigenetic heterochromatin inheritance","synonyms":[{"name":"abolished PEV","type":"related"},{"name":"abolished epigenetic heterochromatin propagation","type":"exact"},{"name":"abolished epigenetic inheritance of heterochromatin","type":"exact"}],"termid":"FYPO:0007376"}


id: PBO:0045451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydropyrimidinase like 4","termid":"PBO:0045451"}


id: PBO:0072842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sin3A associated protein 130","termid":"PBO:0072842"}


id: PBO:0108942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 21","termid":"PBO:0108942"}


id: PBO:0003458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rad18 homolog Rhp18","termid":"PBO:0003458"}


id: GO:0015772
data:
  {"annotated_genes":["SJAG_03960"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95254],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106081"},{"annotations":[95256],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106082"}]},"cv_name":"biological_process","definition":"The directed movement of oligosaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligosaccharides are molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transport","termid":"GO:0008643"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"oligosaccharide transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015772","terms_by_termid":{"GO:0106081":null,"GO:0106082":null}}


id: MONDO:0004436
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A liposarcoma that arises from the ovary and is composed of round to oval mesenchymal cells, small signet ring lipoblasts, and a rich network of capillaries in a myxoid stroma.","definition_xrefs":["NCIT:C5235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liposarcoma of the ovary","termid":"MONDO:0003589"},{"relation_name":"is_a","term_name":"myxoid liposarcoma","termid":"MONDO:0013280"},{"relation_name":"is_a","term_name":"familial ovarian cancer","termid":"MONDO:0016248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ovarian myxoid liposarcoma","secondary_identifiers":["MEDGEN:235420","DOID:8023","UMLS:C1335170"],"synonyms":[{"name":"myxoid liposarcoma of ovary","type":"exact"},{"name":"myxoid liposarcoma of the ovary","type":"exact"},{"name":"ovarian myxoid liposarcoma","type":"exact"},{"name":"ovary myxoid liposarcoma","type":"exact"}],"termid":"MONDO:0004436","xrefs":{"Monarch":{"xref_id":"0004436"}}}


id: FYPO:0004549
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the S-phase DNA damage checkpoint (also known as the intra-S phase DNA damage checkpoint) is normal (i.e. indistinguishable from wild type) when the cell is exposed to ultraviolet light. The S phase DNA damage checkpoint slows progression through S phase in response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic DNA damage checkpoint during cellular response to UV","termid":"FYPO:0002102"},{"relation_name":"is_a","term_name":"normal S-phase DNA damage checkpoint","termid":"FYPO:0003530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0000298","FYPO:0001312","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"normal S-phase DNA damage checkpoint during cellular response to UV","synonyms":[{"name":"normal S-phase DNA damage checkpoint activation during cellular response to UV","type":"exact"},{"name":"normal S-phase DNA damage checkpoint during cellular response to UV during mitotic cell cycle","type":"exact"},{"name":"normal S-phase DNA damage checkpoint during cellular response to UV during vegetative growth","type":"exact"},{"name":"normal S-phase DNA damage checkpoint during cellular response to ultraviolet light","type":"exact"},{"name":"normal intra-S phase DNA damage checkpoint during cellular response to UV","type":"exact"},{"name":"normal mitotic S-phase DNA damage checkpoint during cellular response to UV","type":"exact"}],"termid":"FYPO:0004549"}


id: PBO:0016958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific protein, possible cell surface glycoprotein","termid":"PBO:0016958"}


id: FYPO:0002272
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which a cell undergoes one or a few rounds of cell division before cells die, resulting in the formation a colony that contains only a few inviable cells that have abnormal morphology (i.e. size, shape, or structure). Up to 6 rounds of cell division (generating 64 cells) may be observed, but 3 divisions or fewer is more typical.","definition_xrefs":["PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable microcolony, abnormal cell morphology (obsolete FYPO:0002272)","synonyms":[{"name":"inviable microcolony, vegetative cells with abnormal morphology","type":"exact"}],"termid":"FYPO:0002272"}


id: PBO:0052541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 14","termid":"PBO:0052541"}


id: PBO:0041107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"barttin CLCNK type accessory subunit beta","termid":"PBO:0041107"}


id: PBO:0070078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 35, pseudogene","termid":"PBO:0070078"}


id: PBO:0083810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein with two zinc fingers; present in nucleus of growing cells, relocates to cytoplasm in starved cells via a process mediated by Cpr1p; binds translation elongation factor eEF-1 (Tef1p); relative distribution to nucleus increases upon DNA replication stress; human ZPR1 gene can complement yeast by allowing growth during down-regulation of yeast zpr1","termid":"PBO:0083810"}


id: PBO:0074046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 28","termid":"PBO:0074046"}


id: GO:1905816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of dorsal/ventral axon guidance.","definition_xrefs":["GOC:TermGenie","PMID:18434533","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of axon guidance","termid":"GO:1902668"},{"relation_name":"is_a","term_name":"regulation of dorsal/ventral axon guidance","termid":"GO:1905815"},{"relation_name":"negatively_regulates","term_name":"dorsal/ventral axon guidance","termid":"GO:0033563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dorsal/ventral axon guidance","synonyms":[{"name":"down regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"down regulation of dorsal/ventral axon guidance","type":"exact"},{"name":"down regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"down regulation of dorsoventral axon guidance","type":"exact"},{"name":"down-regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"down-regulation of dorsal/ventral axon guidance","type":"exact"},{"name":"down-regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"down-regulation of dorsoventral axon guidance","type":"exact"},{"name":"downregulation of dorsal-ventral axon guidance","type":"exact"},{"name":"downregulation of dorsal/ventral axon guidance","type":"exact"},{"name":"downregulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"downregulation of dorsoventral axon guidance","type":"exact"},{"name":"inhibition of dorsal-ventral axon guidance","type":"narrow"},{"name":"inhibition of dorsal/ventral axon guidance","type":"narrow"},{"name":"inhibition of dorsal/ventral axon pathfinding","type":"narrow"},{"name":"inhibition of dorsoventral axon guidance","type":"narrow"},{"name":"negative regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"negative regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"negative regulation of dorsoventral axon guidance","type":"exact"}],"termid":"GO:1905816"}


id: PBO:0043385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calaxin","termid":"PBO:0043385"}


id: GO:0009788
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of abscisic acid (ABA) signaling.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of abscisic acid-activated signaling pathway","termid":"GO:0009787"},{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"negative regulation of cellular response to alcohol","termid":"GO:1905958"},{"relation_name":"negatively_regulates","term_name":"abscisic acid-activated signaling pathway","termid":"GO:0009738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of abscisic acid-activated signaling pathway","synonyms":[{"name":"down regulation of abscisic acid mediated signaling","type":"exact"},{"name":"down-regulation of abscisic acid mediated signaling","type":"exact"},{"name":"downregulation of abscisic acid mediated signaling","type":"exact"},{"name":"inhibition of abscisic acid mediated signaling","type":"narrow"},{"name":"negative regulation of abscisic acid mediated signaling pathway","type":"related"},{"name":"negative regulation of abscisic acid mediated signalling","type":"exact"}],"termid":"GO:0009788"}


id: FYPO:0006524
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which sister kinetochores separate during G2 phase of the mitotic cell cycle.","definition_xrefs":["PMID:11598020","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic sister chromatid segregation","termid":"FYPO:0000141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0000641"],"is_obsolete":false,"name":"premature sister kinetochore separation during mitotic G2 phase","synonyms":[{"name":"premature sister kinetochore separation during G2 phase during vegetative growth","type":"exact"},{"name":"premature sister kinetochore separation during G2 phase of mitotic cell cycle","type":"exact"},{"name":"split kinetochores during mitotic G2 phase","type":"related"}],"termid":"FYPO:0006524"}


id: GO:0160040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A migrasome-mediated selective removal of damaged mitochondria process that maintains mitochondrion homeostasis in migrating cells.","definition_xrefs":["PMID:34108688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrion distribution","termid":"GO:0048311"},{"relation_name":"is_a","term_name":"establishment of mitochondrion localization","termid":"GO:0051654"},{"relation_name":"is_a","term_name":"migracytosis","termid":"GO:0140495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"mitocytosis","termid":"GO:0160040"}


id: MONDO:0016469
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ehlers-Danlos, vascular-like type is an adult-onset form of Ehlers-Danlos syndrome characterized by spontaneous dissection of medium-sized arteries during young adulthood, including mainly the iliac, femoral, and renal arteries.","definition_xrefs":["Orphanet:230845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"},{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome","termid":"MONDO:0020066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ehlers-Danlos syndrome, vascular-like type","secondary_identifiers":["SCTID:720862007","icd11.foundation:240424885"],"synonyms":[{"name":"EDS, vascular-like type","type":"exact"}],"termid":"MONDO:0016469","xrefs":{"Monarch":{"xref_id":"0016469"}}}


id: GO:0007443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the Malpighian tubule are generated and organized. This process takes place entirely during the embryonic phase. A Malpighian tubule is a fine, thin-walled excretory tubule in insects which leads into the posterior part of the gut.","definition_xrefs":["ISBN:0582227089","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"is_a","term_name":"renal tubule morphogenesis","termid":"GO:0061333"},{"relation_name":"part_of","term_name":"embryonic hindgut morphogenesis","termid":"GO:0048619"},{"relation_name":"part_of","term_name":"Malpighian tubule development","termid":"GO:0072002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Malpighian tubule morphogenesis","termid":"GO:0007443"}


id: GO:1904463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ergosteryl 3-beta-D-glucoside.","definition_xrefs":["GOC:TermGenie","PMID:26116408","GO_REF:0000068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid biosynthetic process","termid":"GO:0006694"},{"relation_name":"is_a","term_name":"saponin biosynthetic process","termid":"GO:0016135"},{"relation_name":"is_a","term_name":"beta-glucoside biosynthetic process","termid":"GO:1901806"},{"relation_name":"is_a","term_name":"ergosteryl 3-beta-D-glucoside metabolic process","termid":"GO:1904461"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"ergosteryl 3-beta-D-glucoside biosynthetic process","synonyms":[{"name":"ergosteryl 3-beta-D-glucoside anabolism","type":"exact"},{"name":"ergosteryl 3-beta-D-glucoside biosynthesis","type":"exact"},{"name":"ergosteryl 3-beta-D-glucoside formation","type":"exact"},{"name":"ergosteryl 3-beta-D-glucoside synthesis","type":"exact"}],"termid":"GO:1904463"}


id: PBO:0030167
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-spore_lysis","termid":"PBO:0030167"}


id: PBO:0049963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIG1 hypoxia inducible domain family member 1A pseudogene 9","termid":"PBO:0049963"}


id: PBO:0002112
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. cerevisiae PN uptake is mediated by the unrelated transporter Tpn1p","termid":"PBO:0002112"}


id: MONDO:1012043
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellar abiotrophy, non-human animal","termid":"MONDO:1011834"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar abiotrophy, sheep","secondary_identifiers":["OMIA:000175-9940"],"termid":"MONDO:1012043","xrefs":{"Monarch":{"xref_id":"1012043"}}}


id: MONDO:0011832
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the CCDC50 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 44","secondary_identifiers":["DOID:0110569","MEDGEN:334525","MESH:C564399","GARD:18118","UMLS:C1843895","OMIM:607453"],"synonyms":[{"name":"CCDC50 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"DFNA44","type":"narrow"},{"name":"autosomal dominant deafness 44","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 44","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in CCDC50","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 44","type":"narrow"},{"name":"deafness, autosomal dominant 44","type":"narrow"},{"name":"deafness, autosomal dominant type 44","type":"narrow"}],"termid":"MONDO:0011832","xrefs":{"Monarch":{"xref_id":"0011832"}}}


id: PBO:0078072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking kinesin protein 1","termid":"PBO:0078072"}


id: PBO:0039883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGAP42 antisense RNA 1","termid":"PBO:0039883"}


id: MONDO:0018770
data:
  {"annotated_genes":["SJAG_01370"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86307],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054565"}]},"cv_name":"mondo","definition":"Jeune syndrome, also called asphyxiating thoracic dystrophy, is a short-rib dysplasia characterized by a narrow thorax, short limbs and radiological skeletal abnormalities including \\\"trident\\\" aspect of the acetabula and metaphyseal changes.","definition_xrefs":["Orphanet:474"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliopathy","termid":"MONDO:0005308"},{"relation_name":"is_a","term_name":"short rib-polydactyly syndrome","termid":"MONDO:0015461"},{"relation_name":"is_a","term_name":"inherited renal tubular disease","termid":"MONDO:0015962"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01370":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"Jeune syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:75049004","UMLS:C0265275","MEDGEN:78548","NCIT:C84794","icd11.foundation:554018956","DOID:0050592","GARD:3049","MedDRA:10057621","MESH:C537571","NORD:1074","OMIMPS:208500"],"synonyms":[{"name":"ATD","type":"related"},{"name":"Asphyxiating Thoracic Dystrophy","type":"exact"},{"name":"Chondroectodermal dysplasia-like syndrome","type":"related"},{"name":"JATD","type":"exact"},{"name":"Jeune asphyxiating thoracic dystrophy","type":"exact"},{"name":"Jeune syndrome","type":"exact"},{"name":"Jeune's syndrome","type":"related"},{"name":"asphyxiating thoracic dystrophy","type":"related"},{"name":"asphyxiating thoracic dystrophy of the newborn","type":"exact"},{"name":"infantile thoracic dystrophy","type":"related"},{"name":"short-rib thoracic dysplasia","type":"exact"},{"name":"short-rib thoracic dysplasia with or without polydactyly","type":"exact"},{"name":"thoracic pelvic phalangeal dystrophy","type":"exact"}],"termid":"MONDO:0018770","terms_by_termid":{"MONDO:0054565":null},"xrefs":{"Monarch":{"xref_id":"0018770"}}}


id: PBO:0002050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S14 (predicted)","termid":"PBO:0002050"}


id: MONDO:0016935
data:
  {"annotated_genes":["SJAG_02231"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85042],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012574"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal duplication","termid":"MONDO:0000762"},{"relation_name":"is_a","term_name":"chromosome 17 disorder","termid":"MONDO:0020583"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02231":null},"genotype_count":0,"is_obsolete":false,"name":"partial duplication of chromosome 17","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1387434","GARD:20855","Orphanet:262677","SCTID:726356000","UMLS:C4518505"],"synonyms":[{"name":"partial duplication of chromosome type 17","type":"exact"},{"name":"partial trisomy of chromosome 17","type":"exact"}],"termid":"MONDO:0016935","terms_by_termid":{"MONDO:0012574":null},"xrefs":{"Monarch":{"xref_id":"0016935"}}}


id: PBO:0088156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vesicle membrane receptor protein (v-SNARE); involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; proposed to be involved in endocytosis; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins; SNC1 has a paralog, SNC2, that arose from the whole genome duplication","termid":"PBO:0088156"}


id: GO:0080161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of auxins from one side of a membrane to the other. Auxins are plant hormones that regulate aspects of plant growth.","definition_xrefs":["PMID:19506555"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"auxin transmembrane transporter activity","termid":"GO:0080161"}


id: PBO:0113009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase involved in protein folding and NLS-directed nuclear transport; HSP70 family member; required for ubiquitin-dependent degradation of short-lived proteins; forms a chaperone complex with Ydj1p; localizes to the nucleus, cytoplasm and cell wall; unique functional specificity in the propagation of yeast [URE3] prions and vacuolar-mediated degradation of gluconeogenic enzymes; general targeting factor of Hsp104p to prion fibrils; 98% identity with paralog Ssa2p","termid":"PBO:0113009"}


id: GO:0036462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An extrinsic apoptotic signaling pathway initiated by the binding of the ligand TRAIL (tumor necrosis factor-related apoptosis-inducing ligand) to a death receptor on the cell surface.","definition_xrefs":["PMID:21785459","GOC:PARL","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic apoptotic signaling pathway via death domain receptors","termid":"GO:0008625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"TRAIL-activated apoptotic signaling pathway","synonyms":[{"name":"TRAIL-activated extrinsic apoptotic signaling pathway","type":"exact"},{"name":"TRAIL-induced apoptotic signaling pathway","type":"exact"},{"name":"tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway","type":"exact"}],"termid":"GO:0036462"}


id: PBO:0091531
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cruciform-Cutting Endonuclease","termid":"PBO:0091531"}


id: GO:0021750
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the vestibular nucleus over time, from its formation to the mature structure.","definition_xrefs":["GOC:dgh","GOC:dph","GO_REF:0000021","PMID:16221589","GOC:curators","GOC:cls","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural nucleus development","termid":"GO:0048857"},{"relation_name":"part_of","term_name":"pons development","termid":"GO:0021548"},{"relation_name":"part_of","term_name":"medulla oblongata development","termid":"GO:0021550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vestibular nucleus development","termid":"GO:0021750"}


id: MONDO:1011486
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Complement component 2 deficiency that occurs in domestic guinea pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complement component 2 deficiency, non-human animal","termid":"MONDO:1011424"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement component 2 deficiency, domestic guinea pig","secondary_identifiers":["OMIA:001625-10141"],"synonyms":[{"name":"C2 deficiency, domestic guinea pig","type":"exact"}],"termid":"MONDO:1011486","xrefs":{"Monarch":{"xref_id":"1011486"}}}


id: MONDO:1010904
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Gaucher disease that occurs in sheep due to a mutation in the GBA1 gene. Neonatal lambs display severe neurological disease with shaking and inability to stand. Their skin at birth is abnormal and thickened.","definition_xrefs":["OMIA:002621-9940","PMID:38003227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Gaucher disease, sheep","termid":"MONDO:1011509"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gaucher disease, GBA1-related, sheep","synonyms":[{"name":"Gaucher disease, type II, sheep","type":"related"}],"termid":"MONDO:1010904","xrefs":{"Monarch":{"xref_id":"1010904"}}}


id: MONDO:0007738
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"CHST3-related skeletal dysplasia is a very rare bone disorder characterized clinically by short stature of prenatal onset; dislocation of the knees, hips or elbows; club feet; limitation of range of motion of large joints; progressive kyphosis; and occasional scoliosis. In a few patients, minor heart valve dysplasia has also been described. Intellect, vision and hearing are normal.","definition_xrefs":["Orphanet:263463"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with multiple joint dislocations (obsolete MONDO:0019700)","termid":"MONDO:0019700"},{"relation_name":"is_a","term_name":"mineral metabolism disease","termid":"MONDO:0000226"},{"relation_name":"is_a","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005497"],"is_obsolete":false,"name":"spondyloepiphyseal dysplasia with congenital joint dislocations","secondary_identifiers":["OMIM:143095","SCTID:702400006","GARD:13169","MEDGEN:373381","ICD9:756.9","MESH:C537283","UMLS:C1837657","DOID:0050813"],"synonyms":[{"name":"CHST3-related skeletal dysplasia","type":"exact"},{"name":"Gollop Coates syndrome","type":"related"},{"name":"Humerospinal dysostosis","type":"exact"},{"name":"Kozlowski Celermajer tink syndrome","type":"exact"},{"name":"Omani type","type":"exact"},{"name":"SDCD, CHST3 type","type":"exact"},{"name":"SEDCJD","type":"related"},{"name":"bifurcation of distal humerus with oligoectro-syndactyly","type":"related"},{"name":"chondrodysplasia with congenital joint dislocations, CHST3 type","type":"exact"},{"name":"chondrodysplasia with multiple dislocations","type":"exact"},{"name":"humero-spinal dysostosis with congenital heart disease","type":"exact"},{"name":"spondyloepiphyseal dysplasia","type":"broad"},{"name":"spondyloepiphyseal dysplasia with congenital JOINT dislocations","type":"related"},{"name":"spondyloepiphyseal dysplasia with congenital joint dislocations","type":"exact"},{"name":"spondyloepiphyseal dysplasia with congenital joint dyslocations, CHST3 type","type":"exact"},{"name":"spondyloepiphyseal dysplasia, Omani type","type":"related"}],"termid":"MONDO:0007738","xrefs":{"Monarch":{"xref_id":"0007738"}}}


id: PBO:0049100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 157","termid":"PBO:0049100"}


id: PBO:0086650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole","termid":"PBO:0086650"}


id: PBO:0082000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger SWIM-type containing 1","termid":"PBO:0082000"}


id: MONDO:0016899
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Duchenne and Becker muscular dystrophies (DMD and BMD) are neuromuscular diseases characterized by progressive muscle wasting and weakness due to degeneration of skeletal, smooth and cardiac muscle.","definition_xrefs":["Orphanet:262"],"gene_count":0,"genotype_count":0,"name":"obsolete Duchenne and Becker muscular dystrophy (obsolete MONDO:0016899)","synonyms":[{"name":"severe dystrophinopathy, Duchenne and Becker type","type":"exact"}],"termid":"MONDO:0016899","xrefs":{"Monarch":{"xref_id":"0016899"}}}


id: PBO:0083558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene PKH2/YOL100W; may interact with ribosomes","termid":"PBO:0083558"}


id: PBO:0025504
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wolman disease","termid":"PBO:0025504"}


id: GO:0016271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A permanent cessation of all vital functions of a tissue.","definition_xrefs":["GOC:dph","GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete tissue death (obsolete GO:0016271)","termid":"GO:0016271"}


id: GO:0019627
data:
  {"annotated_genes":["SJAG_00392","SJAG_00635","SJAG_05338","SJAG_02766","SJAG_00412","SJAG_04299","SJAG_04679","SJAG_00035","SJAG_04896","SJAG_01461","SJAG_03398","SJAG_04577"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94907,96311,113564,118493],"is_not":false,"summary":null,"term":"GO:0019627"},{"annotations":[118492,90933],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043419"},{"annotations":[96840,112699,106009,91943,109959,110569,97665,102949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000050"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving urea, the water soluble compound O=C-(NH2)2.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"},{"relation_name":"is_a","term_name":"small molecule metabolic process","termid":"GO:0044281"},{"relation_name":"is_a","term_name":"nitrogen cycle metabolic process","termid":"GO:0071941"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00035":null,"SJAG_00392":null,"SJAG_00412":null,"SJAG_00635":null,"SJAG_01461":null,"SJAG_02766":null,"SJAG_03398":null,"SJAG_04299":null,"SJAG_04577":null,"SJAG_04679":null,"SJAG_04896":null,"SJAG_05338":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0071941"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0071941","GO:0044281"],"is_obsolete":false,"name":"urea metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"urea metabolism","type":"exact"}],"termid":"GO:0019627","terms_by_termid":{"GO:0000050":null,"GO:0019627":null,"GO:0043419":null}}


id: PBO:0000383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGEF Gef1","termid":"PBO:0000383"}


id: GO:0160193
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of L-lactate dehydrogenase.","definition_xrefs":["PMID:33406399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0030234","GO:0004857","GO:0140678","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"L-lactate dehydrogenase inhibitor activity","termid":"GO:0160193"}


id: GO:0071086
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface proteins CD9 and CD47, and the heterodimeric platelet glycoprotein Ib.","definition_xrefs":["PMID:10429193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoprotein complex","termid":"GO:0090665"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"alphaIIb-beta3 integrin-CD9-CD47-platelet glycoprotein Ib complex","synonyms":[{"name":"ITGA2b-ITGB3-CD9-GP1b-CD47 complex","type":"narrow"}],"termid":"GO:0071086"}


id: PBO:0031132
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_cell_upon_G0_to_G1_transition","termid":"PBO:0031132"}


id: PBO:0039426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiopoietin like 6","termid":"PBO:0039426"}


id: GO:1901378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of organic heteropentacyclic compound.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete organic heteropentacyclic compound biosynthetic process (obsolete GO:1901378)","synonyms":[{"name":"organic heteropentacyclic compound anabolism","type":"exact"},{"name":"organic heteropentacyclic compound biosynthesis","type":"exact"},{"name":"organic heteropentacyclic compound formation","type":"exact"},{"name":"organic heteropentacyclic compound synthesis","type":"exact"}],"termid":"GO:1901378"}


id: MONDO:0017072
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myelomeningocele","termid":"MONDO:0019773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"lumbosacral spina bifida cystica","secondary_identifiers":["GARD:20961","Orphanet:268758"],"termid":"MONDO:0017072","xrefs":{"Monarch":{"xref_id":"0017072"}}}


