# terms

id: FYPO:0000477
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which one or both meiotic nuclear division(s) begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiosis","termid":"FYPO:0000051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"delayed onset of meiosis","synonyms":[{"name":"delayed meiosis","type":"exact"},{"name":"delayed onset of meiotic nuclear division","type":"exact"},{"name":"meiosis: delayed","type":"related"}],"termid":"FYPO:0000477"}


id: MONDO:0850519
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An amino acid metabolic disorder that are characterized phenotypically by hyperphenylalaninemia, depletion of the neurotransmitters dopamine and serotonin, and progressive cognitive and motor deficits and that has material basis in autosomal recessive mutations in the genes encoding enzymes involved in the synthesis or regeneration of BH4.","definition_xrefs":["DOID:0081132"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of amino acid metabolism","termid":"MONDO:0004736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"tetrahydrobiopterin (BH4)-deficient hyperphenylalaninemia","termid":"MONDO:0850519","xrefs":{"Monarch":{"xref_id":"0850519"}}}


id: PBO:0043369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clusterin associated protein 1","termid":"PBO:0043369"}


id: PBO:0006195
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-modified_by","termid":"PBO:0006195"}


id: PBO:0062364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily X member 1","termid":"PBO:0062364"}


id: PATO:0001267
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of brown hue and high saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brown","termid":"PATO:0000952"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"saturated brown","synonyms":[{"name":"bright brown","type":"related"}],"termid":"PATO:0001267"}


id: PBO:0089209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, middle-meiotic Cuf2","termid":"PBO:0089209"}


id: MONDO:0957533
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukoencephalopathy, megalencephalic","termid":"MONDO:0000137"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"megalencephalic leukoencephalopathy with subcortical cysts 3","secondary_identifiers":["OMIM:620447","UMLS:C5830625","MEDGEN:1841261"],"termid":"MONDO:0957533","xrefs":{"Monarch":{"xref_id":"0957533"}}}


id: PATO:0001022
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time.","direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"impulse","termid":"PATO:0001022"}


id: PR:O13874
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1B3.09c gene.","definition_xrefs":["UniProtKB:O13874","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized NOC2 family protein C1B3.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B3.09c","synonyms":[{"name":"Spom972h-SPAC1B3.09c","type":"exact"}],"termid":"PR:O13874"}


id: PR:Q09805
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar protein sorting-associated protein 45 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00316","PANTHER:PTHR11679:SF3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 45 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2G11.03c","secondary_identifiers":["UniProtKB:Q09805"],"synonyms":[{"name":"Spom972h-VPS45","type":"exact"}],"termid":"PR:Q09805"}


id: PBO:0076002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stromal interaction molecule 1","termid":"PBO:0076002"}


id: FYPO:0005304
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of progression through interphase of the mitotic cell cycle is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased duration of mitotic cell cycle phase","termid":"FYPO:0001069"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of mitotic interphase","synonyms":[{"name":"decreased rate of mitotic interphase progression","type":"related"},{"name":"delayed mitotic interphase progression","type":"related"},{"name":"delayed mitotic interphase progression during vegetative growth","type":"related"},{"name":"increased duration of interphase during mitotic cell cycle","type":"exact"},{"name":"increased duration of mitotic interphase during vegetative growth","type":"exact"},{"name":"prolonged mitotic interphase","type":"exact"},{"name":"reduced rate of mitotic interphase progression","type":"related"}],"termid":"FYPO:0005304"}


id: PBO:0031295
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_plasma_membrane_sterol_distribution","termid":"PBO:0031295"}


id: GO:0003342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the proepicardium from its formation to the mature structure. The proepicardium is an outpouching of the septum transversum.","definition_xrefs":["PMID:18722343","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchyme development","termid":"GO:0060485"},{"relation_name":"part_of","term_name":"septum transversum development","termid":"GO:0003343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"proepicardium development","termid":"GO:0003342"}


id: MONDO:0001480
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"testicular cancer","termid":"MONDO:0005447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant tumor of undescended testis","secondary_identifiers":["ICD9:186.0","UMLS:C0153595","SCTID:188219004","DOID:12276","MEDGEN:509335"],"synonyms":[{"name":"malignant neoplasm of retained testis","type":"exact"},{"name":"malignant neoplasm of undescended testis","type":"exact"},{"name":"malignant tumor of retained testis","type":"exact"},{"name":"malignant tumour of retained testis","type":"exact"}],"termid":"MONDO:0001480","xrefs":{"Monarch":{"xref_id":"0001480"}}}


id: MONDO:0021240
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm (disease) that involves the tongue.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tongue disorder","termid":"MONDO:0001165"},{"relation_name":"is_a","term_name":"head and neck neoplasm","termid":"MONDO:0005586"},{"relation_name":"is_a","term_name":"digestive system neoplasm","termid":"MONDO:0021223"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tongue neoplasm","secondary_identifiers":["EFO:0003871","NCIT:C3416","SCTID:126778001","UMLS:C0040411","MEDGEN:52778"],"synonyms":[{"name":"neoplasm of the tongue","type":"exact"},{"name":"neoplasm of tongue","type":"exact"},{"name":"tongue neoplasm (disease)","type":"exact"},{"name":"tongue tumor","type":"exact"},{"name":"tongue tumour","type":"exact"},{"name":"tumor of the tongue","type":"exact"},{"name":"tumor of tongue","type":"exact"},{"name":"tumour of the tongue","type":"exact"},{"name":"tumour of tongue","type":"exact"}],"termid":"MONDO:0021240","xrefs":{"Monarch":{"xref_id":"0021240"}}}


id: PBO:0053053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LARP7 pseudogene 4","termid":"PBO:0053053"}


id: MONDO:0001180
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Keratopathy that is characterized by the presence of epithelial bullae.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keratopathy","termid":"MONDO:0002261"},{"relation_name":"is_a","term_name":"corneal edema","termid":"MONDO:0006712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"bullous keratopathy","secondary_identifiers":["ICD10CM:H18.1","SCTID:57207003","MEDGEN:57600","icd11.foundation:1270454490","NCIT:C26970","DOID:11031","ICD9:371.23","UMLS:C0155111"],"termid":"MONDO:0001180","xrefs":{"Monarch":{"xref_id":"0001180"}}}


id: MONDO:0006996
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute onset of severe, life-threatening hyperthyroidism caused by a sudden release of excessive thyroid hormone.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperthyroidism","termid":"MONDO:0004425"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyroid crisis","secondary_identifiers":["MedDRA:10043705","ICD9:242.91","MESH:D013958","HP:0011782","ICD9:242.81","UMLS:C0040127","SCTID:29028009","EFO:1001212","MEDGEN:11813","NCIT:C112836","DOID:12837","icd11.foundation:1215823328"],"synonyms":[{"name":"thyroid crisis","type":"exact"},{"name":"thyroid crisis (disease)","type":"exact"},{"name":"thyroid storm","type":"exact"},{"name":"thyrotoxic crisis","type":"exact"}],"termid":"MONDO:0006996","xrefs":{"Monarch":{"xref_id":"0006996"}}}


id: GO:0044324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription that contributes to the specification of the anterior/posterior axis.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription involved in anterior/posterior axis specification (obsolete GO:0044324)","termid":"GO:0044324"}


id: PBO:0062221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily AP member 2","termid":"PBO:0062221"}


id: MONDO:0010842
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mucocutaneous venous malformations (VMCMs) are hereditary vascular malformations characterized by the presence of small, multifocal, bluish-purple venous lesions involving the skin and mucosa.","definition_xrefs":["Orphanet:2451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"multiple cutaneous and mucosal venous malformations","secondary_identifiers":["SCTID:699301008","UMLS:C1838437","MEDGEN:325026","OMIM:600195","DOID:0050792","MESH:C563977","GARD:16600"],"synonyms":[{"name":"VENOUS malformations, multiple cutaneous and mucosal","type":"related"},{"name":"VMCM","type":"exact"},{"name":"Vmcm1","type":"related"},{"name":"cutaneous and mucosal venous malformation","type":"exact"},{"name":"mucocutaneous venous malformations","type":"related"}],"termid":"MONDO:0010842","xrefs":{"Monarch":{"xref_id":"0010842"}}}


id: PBO:0011430
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved in vertebrate","termid":"PBO:0011430"}


id: PBO:0081367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 205","termid":"PBO:0081367"}


id: GO:0015395
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a nucleoside, from one side of a membrane to the other, down the concentration gradient.","definition_xrefs":["PMID:12446811","PMID:10353709","PMID:11749958"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside transmembrane transporter activity","termid":"GO:0005337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"nucleoside transmembrane transporter activity, down a concentration gradient","secondary_identifiers":["GO:0015397","GO:0015396"],"synonyms":[{"name":"equilibrative nucleoside transmembrane transporter, nitrobenzyl-thioinosine-insensitive activity","type":"narrow"},{"name":"equilibrative nucleoside transmembrane transporter, nitrobenzyl-thioinosine-sensitive activity","type":"narrow"},{"name":"equilibrative nucleoside transporter activity","type":"exact"}],"termid":"GO:0015395"}


id: SO:0000444
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Non-coding exon in the 3' UTR.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"noncoding_exon","termid":"SO:0000198"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_noncoding_exon","synonyms":[{"name":"three prime noncoding exon","type":"exact"}],"termid":"SO:0000444"}


id: PBO:0066642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB7A interacting MON1-CCZ1 complex subunit 1","termid":"PBO:0066642"}


id: PBO:0081677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 598, E3 ubiquitin ligase","termid":"PBO:0081677"}


id: RO:HOM0000043
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Historical homology that is based on distant shared ancestry.","definition_xrefs":["ISBN:978-0252068140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in_historical_homology_relationship_with","termid":"RO:HOM0000007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_plesiomorphy_relationship_with","synonyms":[{"name":"plesiomorphous to","type":"exact"},{"name":"symplesiomorphy","type":"related"}],"termid":"RO:HOM0000043"}


id: MONDO:0012031
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any inherited bleeding disorder, platelet-type in which the cause of the disease is a mutation in the CD36 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited bleeding disorder, platelet-type","termid":"MONDO:0000009"},{"relation_name":"is_a","term_name":"inherited blood coagulation disorder","termid":"MONDO:0021181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"platelet-type bleeding disorder 10","secondary_identifiers":["OMIM:608404","DOID:0111046","MEDGEN:374856","UMLS:C1842090","MESH:C564245"],"synonyms":[{"name":"BDPLT10","type":"exact"},{"name":"CD36 deficiency","type":"exact"},{"name":"CD36 inherited bleeding disorder, platelet-type","type":"exact"},{"name":"bleeding disorder, Platelet-type, 10","type":"related"},{"name":"inherited bleeding disorder, platelet-type caused by mutation in CD36","type":"exact"},{"name":"platelet glycoprotein 4 deficiency","type":"related"},{"name":"platelet glycoprotein IV deficiency","type":"exact"},{"name":"platelet-type bleeding disorder 10","type":"exact"}],"termid":"MONDO:0012031","xrefs":{"Monarch":{"xref_id":"0012031"}}}


id: MONDO:0009693
data:
  {"annotated_genes":["SJAG_02527"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86814],"is_not":false,"summary":null,"term":"MONDO:0009693"}]},"cv_name":"mondo","definition":"A bone marrow-based plasma cell neoplasm characterized by a serum monoclonal protein and skeletal destruction with osteolytic lesions, pathological fractures, bone pain, hypercalcemia, and anemia. Clinical variants include non-secretory myeloma, smoldering myeloma, indolent myeloma, and plasma cell leukemia. (WHO, 2001)","definition_xrefs":["NCIT:C3242"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"plasma cell neoplasm","termid":"MONDO:0004959"},{"relation_name":"is_a","term_name":"myeloid neoplasm","termid":"MONDO:0005170"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02527":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"plasma cell myeloma","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICDO:9732/3","MedDRA:10028228","UMLS:C0026764","ONCOTREE:PCM","ICD10CM:C90.0","ICD9:203.0","DOID:9538","icd11.foundation:1582389689","NORD:1469","OMIM:254500","EFO:0001378","icd11.foundation:526287100","MESH:D009101","GARD:7108","MEDGEN:10122","Orphanet:29073"],"synonyms":[{"name":"Al amyloidosis","type":"related"},{"name":"Kahler disease","type":"exact"},{"name":"Kahler's disease","type":"exact"},{"name":"Multiple Myeloma","type":"exact"},{"name":"amyloidosis, systemic","type":"related"},{"name":"medullary plasmacytoma","type":"exact"},{"name":"multiple myeloma","type":"exact"},{"name":"multiple myeloma, resistance to, Somatic mutation","type":"exact"},{"name":"multiple myeloma, susceptibility to, Somatic mutation","type":"exact"},{"name":"multiple myeloma/plasma cell myeloma","type":"exact"},{"name":"myeloid neoplasm of plasma cell","type":"exact"},{"name":"myeloma","type":"exact"},{"name":"myeloma - multiple","type":"related"},{"name":"myeloma, multiple","type":"exact"},{"name":"myeloma, plasma cell, malignant","type":"exact"},{"name":"myelomatosis","type":"exact"},{"name":"plasma cell myeloid neoplasm","type":"exact"},{"name":"plasma cell myeloma","type":"exact"}],"termid":"MONDO:0009693","terms_by_termid":{"MONDO:0009693":null},"xrefs":{"Monarch":{"xref_id":"0009693"}}}


id: PBO:0061095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"notchless homolog 1","termid":"PBO:0061095"}


id: GO:0003078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate, or extent of natriuresis, the process of renal sodium excretion.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of natriuresis (obsolete GO:0003078)","synonyms":[{"name":"regulation of natriuresis","type":"exact"}],"termid":"GO:0003078"}


id: PBO:0091328
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar Protein Sorting","termid":"PBO:0091328"}


id: GO:0009644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to light intensity","termid":"GO:0009642"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to high light intensity","termid":"GO:0009644"}


id: PBO:0082433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bridging factor involved in ER-associated protein degradation (ERAD); bridges the cytosolic Cdc48p-Npl1p-Ufd1p ATPase complex and the membrane associated Ssm4p and Hrd1p ubiquitin ligase complexes; contains a UBX (ubiquitin regulatory X) domain and a ubiquitin-associated (UBA) domain; redistributes from the ER to lipid droplets during the diauxic shift and stationary phase; required for the maintenance of lipid homeostasis; required for mitochondrial protein translocation-associated degradation","termid":"PBO:0082433"}


id: GO:0034929
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-hydroxypyrene + O2 + 2 H+ + 2 e- = 1-hydroxypyrene-7,8-oxide + H2O.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-hydroxypyrene 7,8-monooxygenase activity (obsolete GO:0034929)","termid":"GO:0034929"}


id: FYECO:0000066
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Inositol was absent from the experiment.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE FYECO:0000066 absence of inositol (obsolete FYECO:0000066)","termid":"FYECO:0000066"}


id: PBO:0043893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich protein 1","termid":"PBO:0043893"}


id: PBO:0048540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guided entry of tail-anchored proteins factor 1","termid":"PBO:0048540"}


id: PBO:0012230
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"switching","termid":"PBO:0012230"}


id: PR:O60069
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- swf1 gene.","definition_xrefs":["UniProtKB:O60069","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoyltransferase swf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13G1.07","synonyms":[{"name":"Spom972h-swf1","type":"exact"}],"termid":"PR:O60069"}


id: PBO:0028539
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_primary_cell_septum_thickness","termid":"PBO:0028539"}


id: PBO:0068579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 30, pseudogene","termid":"PBO:0068579"}


id: GO:0033840
data:
  {"annotated_genes":["SJAG_04236"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[117293],"is_not":false,"summary":null,"term":"GO:0033840"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: [(1->4)-alpha-D-glucosyl](n) + an NDP-alpha-D-glucose = [(1->4)-alpha-D-glucosyl](n+1) + a ribonucleoside 5'-diphosphate + H+, where NDP is ADP or UDP.","definition_xrefs":["EC:2.4.1.242","PMID:17472966","RHEA:15873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04236":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"alpha-1,4-glucan glucosyltransferase (NDP-glucose donor) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:2.4.1.242-RXN"],"synonyms":[{"name":"GBSS","type":"related"},{"name":"GBSSI","type":"related"},{"name":"GBSSII","type":"related"},{"name":"NDP-glucose:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase activity","type":"related"},{"name":"NDPglucose-starch glucosyltransferase activity","type":"related"},{"name":"granule-bound starch synthase I activity","type":"related"},{"name":"granule-bound starch synthase II activity","type":"related"},{"name":"granule-bound starch synthase activity","type":"related"},{"name":"starch granule-bound nucleoside diphosphate glucose-starch glucosyltransferase activity","type":"related"},{"name":"starch synthase II activity","type":"related"},{"name":"waxy protein","type":"related"}],"termid":"GO:0033840","terms_by_termid":{"GO:0033840":null}}


id: PBO:0054346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1739","termid":"PBO:0054346"}


id: FYPO:0002629
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of galactose measured in the cell wall is too low to detect.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell during vegetative growth","termid":"FYPO:0001208"},{"relation_name":"is_a","term_name":"decreased level of substance in cell wall during vegetative growth","termid":"FYPO:0002628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0002946","FYPO:0000002"],"is_obsolete":false,"name":"galactose absent from cell wall","synonyms":[{"name":"galactose absent from cell surface","type":"related"},{"name":"galactose absent from cell wall during mitotic cell cycle","type":"related"},{"name":"galactose absent from cell wall during vegetative growth","type":"exact"}],"termid":"FYPO:0002629"}


id: PBO:0070302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY1 pseudogene 8","termid":"PBO:0070302"}


id: MONDO:0000474
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease involving the pericardium.","direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder","termid":"MONDO:0005267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"pericardium disorder","secondary_identifiers":["ICD9:423.8","ICD9:423.9","MEDGEN:539093","SCTID:55855009","UMLS:C0265122","DOID:0050829"],"synonyms":[{"name":"disease of pericardium","type":"exact"},{"name":"disease or disorder of pericardium","type":"exact"},{"name":"disorder of pericardium","type":"exact"},{"name":"pericardium disease","type":"exact"},{"name":"pericardium disease or disorder","type":"exact"}],"termid":"MONDO:0000474","xrefs":{"Monarch":{"xref_id":"0000474"}}}


id: FYPO:0001195
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of galactomannan measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased polysaccharide level during vegetative growth","termid":"FYPO:0001080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased galactomannan level","synonyms":[{"name":"decreased cellular galactomannan level","type":"exact"},{"name":"decreased galactomannan accumulation","type":"related"},{"name":"decreased galactomannan level during mitotic cell cycle","type":"related"},{"name":"decreased galactomannan level during vegetative growth","type":"exact"},{"name":"reduced galactomannan level","type":"exact"}],"termid":"FYPO:0001195"}


id: GO:0102875
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:2-2-18:2-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:3-2-18:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:2-2-18:2-monogalactosyldiacylglycerol desaturase activity (obsolete GO:0102875)","termid":"GO:0102875"}


id: PBO:0083586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; YAR060C has a paralog, YHR212C, that arose from a segmental duplication","termid":"PBO:0083586"}


id: PBO:0089783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP II complex subunit Trs130","termid":"PBO:0089783"}


id: PBO:0091847
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CsX1-Related protein 1","termid":"PBO:0091847"}


id: MONDO:0013400
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, genetic, developmental defect during embryogenesis disorder characterized by severe, early-onset, salt-wasting adrenal insufficiency and ambiguous/female external genitalia (irrespective of chromosomal sex) due to mutations in the <i>CYP11A1</i> gene. Milder cases may present delayed onset of adrenal gland dysfunction and genitalia phenotype may range from normal male to female in individuals with 46,XY karyotype. Imaging studies reveal hypoplastic/absent adrenal glands and biochemical findings include low serum cortisol, mineralocorticoids, androgens, and sodium, with elevated potassium levels.","definition_xrefs":["Orphanet:168558"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"chronic primary adrenal insufficiency","termid":"MONDO:0015129"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"adrenal gland disorder","termid":"MONDO:0005495"},{"relation_name":"is_a","term_name":"46,XY disorder of sex development","termid":"MONDO:0020040"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Congenital adrenal insufficiency with 46, XY sex reversal OR 46,XY disorder of sex development-adrenal insufficiency due to CYP11A1 deficiency","secondary_identifiers":["MEDGEN:462405","NCIT:C131422","OMIM:613743","GARD:17033","DOID:0050546","MESH:C566130","UMLS:C3151055"],"synonyms":[{"name":"46,XY disorder of sex development-adrenal insufficiency due to CYP11A1 deficiency","type":"related"},{"name":"46,XY disorder of sex development-adrenal insufficiency due to CYP11A1 deficiency syndrome","type":"related"},{"name":"XY sex reversal-adrenal failure","type":"exact"},{"name":"XY sex reversal-adrenal failure syndrome","type":"exact"},{"name":"adrenal insufficiency, congenital, with 46,XY SEX reversal, partial or complete","type":"exact"},{"name":"adrenal insufficiency, congenital, with 46XY sex reversal, partial or complete","type":"exact"},{"name":"cholesterol side-chain cleavage deficiency","type":"exact"},{"name":"p450scc deficiency","type":"exact"}],"termid":"MONDO:0013400","xrefs":{"Monarch":{"xref_id":"0013400"}}}


id: MONDO:0016873
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal deletion","termid":"MONDO:0000761"},{"relation_name":"is_a","term_name":"chromosome 8 disorder","termid":"MONDO:0700015"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of chromosome 8","secondary_identifiers":["MEDGEN:1825961","GARD:20796","UMLS:C5679652","Orphanet:261801"],"synonyms":[{"name":"partial deletion of chromosome type 8","type":"exact"},{"name":"partial monosomy of chromosome 8","type":"exact"}],"termid":"MONDO:0016873","xrefs":{"Monarch":{"xref_id":"0016873"}}}


id: FYPO:0003249
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of histone H3 measured at centromeric dh repeat regions is lower than normal.","definition_xrefs":["PomBase:mah","PMID:22291963"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of histone H3 in cell","termid":"FYPO:0004578"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased level of histone H3 at dh repeat","synonyms":[{"name":"decreased level of histone H3 at dh repeat during mitotic cell cycle","type":"related"},{"name":"decreased level of histone H3 at dh repeat during vegetative growth","type":"exact"},{"name":"reduced level of histone H3 at dh repeat","type":"exact"}],"termid":"FYPO:0003249"}


id: MONDO:0014536
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any thrombocytopenia in which the cause of the disease is a mutation in the ETV6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary thrombocytopenia and hematologic cancer predisposition syndrome","termid":"MONDO:0011071"},{"relation_name":"is_a","term_name":"inherited thrombocytopenia","termid":"MONDO:0100241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"thrombocytopenia 5","secondary_identifiers":["MEDGEN:863974","UMLS:C4015537","OMIM:616216"],"synonyms":[{"name":"ETV6 thrombocytopenia","type":"exact"},{"name":"THC5","type":"related"},{"name":"thrombocytopenia 5","type":"exact"},{"name":"thrombocytopenia 5 with increased susceptibility to malignancy","type":"related"},{"name":"thrombocytopenia caused by mutation in ETV6","type":"exact"},{"name":"thrombocytopenia type 5","type":"exact"},{"name":"thrombocytopenia, autosomal dominant, 5","type":"related"}],"termid":"MONDO:0014536","xrefs":{"Monarch":{"xref_id":"0014536"}}}


id: GO:0098851
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to double-stranded miRNA. double-stranded miRNA is formed by processing of pre-miRNA stem-loop structures.","definition_xrefs":["GOC:BHF","GOC:rph","GOC:BHF_miRNA","PMID:19966796"],"direct_ancestors":[{"relation_name":"is_a","term_name":"double-stranded RNA binding","termid":"GO:0003725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003723","GO:0003674"],"is_obsolete":false,"name":"double-stranded miRNA binding","synonyms":[{"name":"miRNA duplex binding","type":"exact"}],"termid":"GO:0098851"}


id: PBO:0052242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel tetramerization domain containing 12","termid":"PBO:0052242"}


id: MONDO:0013095
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"glioma susceptibility","termid":"MONDO:0100242"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glioma susceptibility 6","secondary_identifiers":["OMIM:613031","UMLS:C2751639","MEDGEN:414429"],"synonyms":[{"name":"GLM6","type":"exact"},{"name":"glioma susceptibility 6","type":"exact"}],"termid":"MONDO:0013095","xrefs":{"Monarch":{"xref_id":"0013095"}}}


id: MONDO:0016810
data:
  {"annotated_genes":["SJAG_02658"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85835],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009783"}]},"cv_name":"mondo","definition":"Autosomal recessive form of progressive external ophthalmoplegia.","definition_xrefs":["MONDO:patterns/autosomal_recessive"],"direct_ancestors":[{"relation_name":"is_a","term_name":"progressive external ophthalmoplegia","termid":"MONDO:0005181"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02658":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0006025","MONDO:0005066","MONDO:0002320","MONDO:0004069"],"is_obsolete":false,"name":"autosomal recessive progressive external ophthalmoplegia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:254886","UMLS:C1850303","GARD:1191","ICD10CM:H49.4","MEDGEN:340509","MESH:C564926"],"synonyms":[{"name":"arPEO","type":"exact"},{"name":"progressive external ophthalmoplegia, autosomal recessive","type":"exact"}],"termid":"MONDO:0016810","terms_by_termid":{"MONDO:0009783":null},"xrefs":{"Monarch":{"xref_id":"0016810"}}}


id: FYECO:0000423
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ciclopirox olamine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ciclopirox olamine","synonyms":[{"name":"+ ciclopirox olamine","type":"exact"}],"termid":"FYECO:0000423"}


id: PBO:0069614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 891, pseudogene","termid":"PBO:0069614"}


id: PBO:0079568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin B","termid":"PBO:0079568"}


id: PBO:0012562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome complex subunit alpha 5, Pup2 (predicted)","termid":"PBO:0012562"}


id: PBO:0028639
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_meiotic_sister_chromatid_cohesion_during_prophase_I","termid":"PBO:0028639"}


id: SO:0001662
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A TATA box core promoter of a gene transcribed by RNA polymerase III.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TATA_box","termid":"SO:0000174"},{"relation_name":"part_of","term_name":"RNApol_III_promoter","termid":"SO:0000171"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA_polymerase_III_TATA_box","synonyms":[{"name":"RNA polymerase III TATA box","type":"exact"}],"termid":"SO:0001662"}


id: PBO:0043911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRLF3 pseudogene 1","termid":"PBO:0043911"}


id: MONDO:0100560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare form of chronic conjunctivitis characterized by the development of firm fibrin-rich, woody-like pseudomembraneous lesions mainly on the tarsal conjunctivae. Ligneous conjunctivitis is usually the initial and most common manifestation of type I congenital plasminogen deficiency.","definition_xrefs":["OMIM:217090","PMID:12850227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conjunctival disorder","termid":"MONDO:0006170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"ligneous conjunctivitis","secondary_identifiers":["MEDGEN:226895","UMLS:C1274789","icd11.foundation:1464324556"],"termid":"MONDO:0100560","xrefs":{"Monarch":{"xref_id":"0100560"}}}


id: GO:0070069
data:
  {"annotated_genes":["SJAG_01190","SJAG_MIT20","SJAG_01077","SJAG_02504","SJAG_00755","SJAG_MIT03","SJAG_03490","SJAG_01763","SJAG_07007","SJAG_MIT04","SJAG_MIT13","SJAG_01490","SJAG_05629","SJAG_00601","SJAG_03337","SJAG_00976","SJAG_01355","SJAG_00080","SJAG_07006","SJAG_02646"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[118552,114593,117184,103991,107449,89450,103578,117661,112894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045275"},{"annotations":[114151,113720,116313,118525,107769,118574,87672,114953,88699,91435,118547],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045277"}]},"cv_name":"cellular_component","definition":"A protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00080":null,"SJAG_00601":null,"SJAG_00755":null,"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_01490":null,"SJAG_01763":null,"SJAG_02504":null,"SJAG_02646":null,"SJAG_03337":null,"SJAG_03490":null,"SJAG_05629":null,"SJAG_07006":null,"SJAG_07007":null,"SJAG_MIT03":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cytochrome complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0070069","terms_by_termid":{"GO:0045275":null,"GO:0045277":null}}


id: GO:0010406
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a cell wall arabinogalactan II glycoprotein, which is composed of a group of core protein containing Hyp, Ala, Ser, Thr and Gly as the major amino acid constituents, and the C-terminus is GPI anchored.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arabinogalactan protein metabolic process","termid":"GO:0010405"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0071554","GO:0008150"],"is_obsolete":false,"name":"classical arabinogalactan protein metabolic process","synonyms":[{"name":"classical-arabinogalactan protein metabolism","type":"exact"}],"termid":"GO:0010406"}


id: MONDO:0000188
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An epileptic encephalopathy resulting from impaired glucose transport into the brain.","definition_xrefs":["PMID:17718830"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn carbohydrate metabolic disorder","termid":"MONDO:0019214"},{"relation_name":"is_a","term_name":"carbohydrate transport disease","termid":"MONDO:0045015"},{"relation_name":"is_a","term_name":"metabolic epilepsy","termid":"MONDO:0100033"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027","MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"GLUT1 deficiency syndrome","secondary_identifiers":["MEDGEN:337833","DOID:0070560","NANDO:1200799","OMIMPS:606777","UMLS:C1847501"],"synonyms":[{"name":"GLUT1 deficiency syndrome","type":"exact"},{"name":"GLUT1DS","type":"exact"}],"termid":"MONDO:0000188","xrefs":{"Monarch":{"xref_id":"0000188"}}}


id: PBO:0038769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACTR6 pseudogene 1","termid":"PBO:0038769"}


id: PBO:0026680
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_arginine_level","termid":"PBO:0026680"}


id: PBO:0051506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IKBKB divergent transcript","termid":"PBO:0051506"}


id: FYPO:0003656
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to vanadate ions (VO4(3-)). Cells stop growing (and may die) at a concentration of vanadate ions that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to vanadate","secondary_identifiers":["FYPO:0000718"],"synonyms":[{"name":"hypersensitive to trisodium vanadate","type":"narrow"},{"name":"hypersensitive to vanadate","type":"exact"},{"name":"sensitive to sodium orthovanadate","type":"narrow"},{"name":"sensitive to trisodium vanadate","type":"narrow"},{"name":"sensitive to trisodium vanadate during mitotic cell cycle","type":"related"},{"name":"sensitive to trisodium vanadate during vegetative growth","type":"narrow"},{"name":"sensitive to vanadate during mitotic cell cycle","type":"related"},{"name":"sensitive to vanadate during vegetative growth","type":"exact"},{"name":"sensitive to vanadate ions","type":"exact"},{"name":"sensitive to vanadate(3-)","type":"exact"},{"name":"sensitive to vanadium oxoanion","type":"broad"}],"termid":"FYPO:0003656"}


id: PBO:0090728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Brix domain protein Rpf1","termid":"PBO:0090728"}


id: PBO:0087207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine-dependent methyltransferase; novel N-terminal protein methyltransferase that trimethylates the N-terminal glycine residue (G2) and also dimethylates lysine (K3) on elongation factor eEF1A (Tef1p/Tef2p); has a role in rDNA silencing and in lifespan determination","termid":"PBO:0087207"}


id: PBO:0084740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial intermembrane space protein; required for normal oxygen consumption; contains twin cysteine-x9-cysteine motifs; protein abundance increases in response to DNA replication stress","termid":"PBO:0084740"}


id: MONDO:0015319
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare disease with Pierre Robin syndrome (obsolete MONDO:0015319)","secondary_identifiers":["Orphanet:138044"],"termid":"MONDO:0015319","xrefs":{"Monarch":{"xref_id":"0015319"}}}


id: GO:0070824
data:
  {"annotated_genes":["SJAG_03982","SJAG_02778","SJAG_03844","SJAG_00934"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91554,107645,111594,112783],"is_not":false,"summary":null,"term":"GO:0070824"}]},"cv_name":"cellular_component","definition":"A histone deacetylase complex that contains a core of four proteins -- Clr1, Clr2, Clr3, and Mit1 in fission yeast -- and localizes to all heterochromatic regions in the genome as well as some euchromatic sites. The complex is involved in regulating nucleosome positioning to assemble higher-order chromatin structures.","definition_xrefs":["GOC:mah","PMID:17289569"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NuRD complex","termid":"GO:0016581"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00934":null,"SJAG_02778":null,"SJAG_03844":null,"SJAG_03982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005694","GO:0005654","GO:0005634"],"is_obsolete":false,"name":"SHREC complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Snf2/HDAC containing repressor complex","type":"exact"},{"name":"Snf2/Hdac repressive complex","type":"exact"}],"termid":"GO:0070824","terms_by_termid":{"GO:0070824":null}}


id: PBO:0075308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppressor of cytokine signaling 5","termid":"PBO:0075308"}


id: PBO:0073209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 4A","termid":"PBO:0073209"}


id: PBO:0041299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 calcium dependent domain containing 4C","termid":"PBO:0041299"}


id: GO:0021639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the trochlear nerve is generated and organized. The trochlear nerve is a motor nerve and is the only cranial nerve to exit the brain dorsally. The trochlear nerve innervates the superior oblique muscle.","definition_xrefs":["ISBN:0838580343","GO_REF:0000021","GOC:dgh","GOC:cls","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve morphogenesis","termid":"GO:0021602"},{"relation_name":"part_of","term_name":"trochlear nerve development","termid":"GO:0021558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trochlear nerve morphogenesis","synonyms":[{"name":"CH IV morphogenesis","type":"related"}],"termid":"GO:0021639"}


id: PBO:0057283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR503 host gene","termid":"PBO:0057283"}


id: PR:Q06182
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- swi10 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q06182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type switching protein swi10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4F6.15c","synonyms":[{"name":"Spom972h-swi10","type":"exact"}],"termid":"PR:Q06182"}


id: PBO:0054570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1972","termid":"PBO:0054570"}


id: GO:0050916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required to receive a sweet taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of taste","termid":"GO:0050909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory perception of sweet taste","synonyms":[{"name":"sweet taste perception","type":"exact"}],"termid":"GO:0050916"}


id: PBO:0062969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) binding protein cytoplasmic 1 pseudogene 12","termid":"PBO:0062969"}


id: GO:0048011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by neurotrophin binding to its receptor on the surface of a target cell where the receptor possesses tyrosine kinase activity, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:bf","GOC:ceb","GOC:signaling","PMID:12065629","Wikipedia:Trk_receptor","GOC:jc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"},{"relation_name":"is_a","term_name":"neurotrophin signaling pathway","termid":"GO:0038179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"neurotrophin TRK receptor signaling pathway","secondary_identifiers":["Reactome:R-HSA-167021","Reactome:R-HSA-166520","Reactome:R-HSA-193704","Reactome:R-HSA-187042"],"synonyms":[{"name":"TrkA signaling pathway","type":"narrow"},{"name":"TrkB signaling pathway","type":"narrow"},{"name":"TrkC signaling pathway","type":"narrow"},{"name":"tropomyosin-receptor-kinase signaling","type":"exact"}],"termid":"GO:0048011"}


id: PBO:0003256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial dynamin family fusion GTPase protein (predicted)","termid":"PBO:0003256"}


id: PBO:0045051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DLEC1 pseudogene 1","termid":"PBO:0045051"}


id: MONDO:1012301
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spondylosis deformans, non-human animal","termid":"MONDO:1011955"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spondylosis deformans, dog","secondary_identifiers":["OMIA:001132-9615"],"termid":"MONDO:1012301","xrefs":{"Monarch":{"xref_id":"1012301"}}}


id: GO:0072188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the metanephric cap acquires its identity.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal system pattern specification","termid":"GO:0072048"},{"relation_name":"is_a","term_name":"metanephric cap formation","termid":"GO:0072187"},{"relation_name":"is_a","term_name":"pattern specification involved in metanephros development","termid":"GO:0072268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric cap specification","termid":"GO:0072188"}


id: PBO:0076484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TARBP2 pseudogene 1","termid":"PBO:0076484"}


id: MONDO:0016576
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Split hand-split foot malformation (SHFM) refers to a spectrum of genetically and clinically heterogenous terminal limb defect characterized by hypoplasia/ absence of central rays of the hands and feet (that can occur in one to all four digits), median clefts of the hands and/ or feet, aplasia and syndactyly, with a wide range of severity ranging from malformed central finger/ toe to a lobster claw-like appearance of the hands and feet. SHFM can be an isolated malformation or can be a feature in various syndromes (ADULT syndrome, EEC syndrome). SHFM usually follows an autosomal dominant pattern of inheritance with incomplete penetrance, but autosomal recessive and rarely X-linked inheritance have also been reported.","definition_xrefs":["Orphanet:2440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"split hand-foot malformation","secondary_identifiers":["UMLS:C0265554","OMIMPS:183600","DOID:0090020","MEDGEN:78566","SCTID:81208006","GARD:6319","NCIT:C75000","NORD:1731"],"synonyms":[{"name":"FEWER digits","type":"exact"},{"name":"SHFM","type":"exact"},{"name":"Split Hand/Split Foot Malformation","type":"exact"},{"name":"ectrodactyly","type":"exact"},{"name":"isolated split hand-split foot malformation","type":"related"},{"name":"lobster-claw deformity","type":"exact"},{"name":"split hand foot malformation","type":"exact"},{"name":"split hand-split foot malformation","type":"related"},{"name":"split-hand deformity","type":"exact"},{"name":"split-hand/foot malformation","type":"exact"}],"termid":"MONDO:0016576","xrefs":{"Monarch":{"xref_id":"0016576"}}}


id: GO:0055040
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Flagellar filaments located in the periplasmic space; characterized in spirochetes, in which they are essential for shape and motility. Composed of a core surrounded by two sheath layers, the flagella rotate to allow migration of the cell through viscous media, which would not be possible using external flagella.","definition_xrefs":["GOC:rph","PMID:15175283","GOC:jid","PMID:1624463"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial-type flagellum","termid":"GO:0009288"},{"relation_name":"part_of","term_name":"periplasmic space","termid":"GO:0042597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"periplasmic flagellum","termid":"GO:0055040"}


id: PBO:0059092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MORC family CW-type zinc finger 4","termid":"PBO:0059092"}


id: PBO:0053320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 102","termid":"PBO:0053320"}


id: PBO:0060343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin IXA","termid":"PBO:0060343"}


id: GO:0010804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate or extent of the tumor necrosis factor-mediated signaling pathway. The tumor necrosis factor-mediated signaling pathway is the series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine-mediated signaling pathway","termid":"GO:0001960"},{"relation_name":"is_a","term_name":"regulation of tumor necrosis factor-mediated signaling pathway","termid":"GO:0010803"},{"relation_name":"negatively_regulates","term_name":"tumor necrosis factor-mediated signaling pathway","termid":"GO:0033209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of tumor necrosis factor-mediated signaling pathway","synonyms":[{"name":"negative regulation of TNF signaling","type":"exact"},{"name":"negative regulation of TNF-mediated signaling pathway","type":"exact"},{"name":"negative regulation of tumor necrosis factor-mediated signalling pathway","type":"exact"}],"termid":"GO:0010804"}


id: PBO:0076470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transport and golgi organization 6 homolog","termid":"PBO:0076470"}


id: MONDO:0021200
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Any of the forms of disease that have a rare incidence.","definition_xrefs":["MONDO:patterns/rare"],"gene_count":0,"genotype_count":0,"name":"obsolete rare disease (obsolete MONDO:0021200)","secondary_identifiers":["NCIT:C4873","MESH:D035583"],"synonyms":[{"name":"rare disease","type":"exact"},{"name":"rare disease or disorder","type":"exact"},{"name":"rare diseases","type":"exact"},{"name":"rare disorder","type":"exact"}],"termid":"MONDO:0021200","xrefs":{"Monarch":{"xref_id":"0021200"}}}


id: PBO:0058772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7106","termid":"PBO:0058772"}


id: GO:0005155
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["GOC:mah","GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete epidermal growth factor receptor activating ligand activity (obsolete GO:0005155)","synonyms":[{"name":"EGF receptor activating ligand activity","type":"exact"},{"name":"EGFR activating ligand activity","type":"exact"},{"name":"epidermal growth factor receptor activating ligand activity","type":"exact"}],"termid":"GO:0005155"}


id: MONDO:0019615
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"adrenal gland neoplasm","termid":"MONDO:0021227"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pituitary dermoid and epidermoid cysts","secondary_identifiers":["UMLS:C5190781","GARD:19161","MEDGEN:1674582","Orphanet:91351"],"termid":"MONDO:0019615","xrefs":{"Monarch":{"xref_id":"0019615"}}}


id: GO:0052874
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: FMNH2 + NAD+ = FMN + NADH + 2 H+.","definition_xrefs":["RHEA:21620"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"FMN reductase (NADH) activity","secondary_identifiers":["EC:1.5.1.42","KEGG_REACTION:R05705"],"synonyms":[{"name":"NADH dehydrogenase (FMN) activity","type":"exact"},{"name":"NADH-FMN reductase activity","type":"related"},{"name":"NADH-dependent FMN reductase activity","type":"related"}],"termid":"GO:0052874"}


id: GO:0098895
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a postsynaptic endosome.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome membrane","termid":"GO:0010008"},{"relation_name":"part_of","term_name":"postsynaptic endosome","termid":"GO:0098845"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005575","GO:0005768"],"is_obsolete":false,"name":"postsynaptic endosome membrane","termid":"GO:0098895"}


id: GO:0140295
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The activity of a pathogen-derived entity that interacts with a host receptor to activate effector-triggered immunity.","definition_xrefs":["PMID:20601497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor ligand activity","termid":"GO:0048018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0140677"}],"interesting_parent_ids":["GO:0003674","GO:0098772","GO:0140677","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"pathogen-derived receptor ligand activity","synonyms":[{"name":"host-selective toxin","type":"related"},{"name":"innate receptor ligand activity","type":"related"},{"name":"necrotrophic effector","type":"related"}],"termid":"GO:0140295"}


id: MONDO:0010109
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraamelia with ectodermal dysplasia and lacrimal duct abnormalities","secondary_identifiers":["MEDGEN:444003","OMIM:273390","UMLS:C2931214","MESH:C536496"],"synonyms":[{"name":"Madokoro Ohdo Sonoda syndrome","type":"related"},{"name":"tetra-amelia, ectodermal dysplasia, and lacrimal duct abnormality","type":"related"},{"name":"tetraamelia with ectodermal dysplasia and lacrimal duct abnormalities","type":"exact"}],"termid":"MONDO:0010109","xrefs":{"Monarch":{"xref_id":"0010109"}}}


id: GO:0060460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which anatomical structures of the left lung are generated and organized.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung morphogenesis","termid":"GO:0060425"},{"relation_name":"part_of","term_name":"left lung development","termid":"GO:0060459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"left lung morphogenesis","termid":"GO:0060460"}


id: PBO:0090457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein Fan1","termid":"PBO:0090457"}


id: PBO:0082350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase of the SFI superfamily; involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; binds to the small ribosomal subunit via an interaction with Rps26; forms cytoplasmic foci upon DNA replication stress","termid":"PBO:0082350"}


id: GO:0004810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a tRNA precursor + ATP + 2 CTP = a tRNA with a 3' CCA end + 3 diphosphate.","definition_xrefs":["PMID:2247609","RHEA:14433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytidylyltransferase activity","termid":"GO:0070567"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003674","GO:0140101","GO:0140098","GO:0003824","GO:0016779","GO:0016740"],"is_obsolete":false,"name":"CCA tRNA nucleotidyltransferase activity","secondary_identifiers":["EC:2.7.7.72","MetaCyc:TRNA-CYTIDYLYLTRANSFERASE-RXN","GO:0016437"],"synonyms":[{"name":"ATP(CTP)-tRNA nucleotidyltransferase","type":"broad"},{"name":"ATP(CTP):tRNA nucleotidyltransferase activity","type":"broad"},{"name":"CCA-adding enzyme activity","type":"related"},{"name":"CTP(ATP):tRNA nucleotidyltransferase","type":"broad"},{"name":"CTP:tRNA cytidylyltransferase activity","type":"broad"},{"name":"ribonucleic cytidylic cytidylic adenylic pyrophosphorylase","type":"broad"},{"name":"ribonucleic cytidylyltransferase","type":"broad"},{"name":"tRNA CCA-diphosphorylase activity","type":"related"},{"name":"tRNA adenylyl(cytidylyl)transferase","type":"broad"},{"name":"tRNA cytidylyltransferase activity","type":"related"},{"name":"tRNA-nucleotidyltransferase activity","type":"broad"},{"name":"transfer RNA adenylyltransferase","type":"broad"},{"name":"transfer ribonucleate adenyltransferase activity","type":"related"},{"name":"transfer ribonucleate adenylyltransferase","type":"broad"},{"name":"transfer ribonucleate nucleotidyltransferase","type":"broad"},{"name":"transfer ribonucleic acid nucleotidyl transferase","type":"broad"},{"name":"transfer ribonucleic adenylyl (cytidylyl) transferase","type":"broad"},{"name":"transfer ribonucleic-terminal trinucleotide nucleotidyltransferase","type":"broad"},{"name":"transfer-RNA nucleotidyltransferase","type":"broad"}],"termid":"GO:0004810"}


id: GO:0086039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A calcium-transporting P-type ATPase activity involved in regulation of the plasma membrane potential.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"P-type calcium transporter activity","termid":"GO:0005388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential","synonyms":[{"name":"calcium-transporting ATPase activity involved in regulation of cardiac muscle cell membrane potential","type":"exact"}],"termid":"GO:0086039"}


id: PBO:0075234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 6 pseudogene 1","termid":"PBO:0075234"}


id: PBO:0044398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily C member 59, pseudogene","termid":"PBO:0044398"}


id: PBO:0013464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoyltransferase Erf2","termid":"PBO:0013464"}


id: PBO:0051649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inosine monophosphate dehydrogenase 1 pseudogene 4","termid":"PBO:0051649"}


id: PBO:0089183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase Chl1","termid":"PBO:0089183"}


id: PR:Q9USU8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ngg1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USU8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin-remodeling complexes subunit ngg1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC28F2.10c","synonyms":[{"name":"Spom972h-ngg1","type":"exact"},{"name":"kinesin-associated protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USU8"}


id: MONDO:0006000
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of peritonitis seen in patients with tuberculosis, characterized by lesion either as a miliary form or as a pelvic mass on the peritoneal surfaces. Most patients have ascites, abdominal swelling, abdominal pain, and other systemic symptoms such as fever; weight loss; and anemia.","definition_xrefs":["MESH:D014395"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abdominal tuberculosis","termid":"MONDO:0000369"},{"relation_name":"is_a","term_name":"peritonitis","termid":"MONDO:0004522"},{"relation_name":"is_a","term_name":"gastrointestinal tuberculosis","termid":"MONDO:0005768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"tuberculous peritonitis","secondary_identifiers":["EFO:0007529","icd11.foundation:925657864","SCTID:44572005","ICD9:014.01","ICD9:014.0","UMLS:C0041325","ICD10CM:A18.31","DOID:9801","MEDGEN:22516","ICD9:014.00"],"synonyms":[{"name":"Mycobacterium tuberculosis caused peritonitis","type":"exact"},{"name":"Mycobacterium tuberculosis peritonitis","type":"exact"}],"termid":"MONDO:0006000","xrefs":{"Monarch":{"xref_id":"0006000"}}}


id: GO:0048894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an efferent axon in a lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the efferent axons in any lateral line nerve.","definition_xrefs":["PMID:15832385"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system neuron axonogenesis","termid":"GO:0021955"},{"relation_name":"part_of","term_name":"lateral line nerve development","termid":"GO:0048892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"efferent axon development in a lateral line nerve","termid":"GO:0048894"}


id: PBO:0058175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4470","termid":"PBO:0058175"}


id: SO:0001506
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A collection of sequences (often chromosomes) of an individual.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genome","termid":"SO:0001026"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variant_genome","synonyms":[{"name":"variant genome","type":"related"}],"termid":"SO:0001506"}


id: PBO:0082315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Assembly factor that couples heme a synthesis to complex IV assembly; regulates the oligomerization state of the Cox15p heme a synthase, and couples this to the assembly of the cytochrome C oxidase complex (complex IV)","termid":"PBO:0082315"}


id: GO:0045821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glycolysis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glycolytic process","termid":"GO:0006110"},{"relation_name":"is_a","term_name":"positive regulation of purine nucleotide catabolic process","termid":"GO:0033123"},{"relation_name":"is_a","term_name":"positive regulation of carbohydrate metabolic process","termid":"GO:0045913"},{"relation_name":"is_a","term_name":"positive regulation of ATP metabolic process","termid":"GO:1903580"},{"relation_name":"positively_regulates","term_name":"glycolytic process","termid":"GO:0006096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"positively_regulates","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0006091","GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"positive regulation of glycolytic process","synonyms":[{"name":"activation of glycolysis","type":"narrow"},{"name":"stimulation of glycolysis","type":"narrow"},{"name":"up regulation of glycolysis","type":"exact"},{"name":"up-regulation of glycolysis","type":"exact"},{"name":"upregulation of glycolysis","type":"exact"}],"termid":"GO:0045821"}


id: GO:1904055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cholangiocyte proliferation.","definition_xrefs":["PMID:24434010","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epithelial cell proliferation","termid":"GO:0050680"},{"relation_name":"is_a","term_name":"regulation of cholangiocyte proliferation","termid":"GO:1904054"},{"relation_name":"negatively_regulates","term_name":"cholangiocyte proliferation","termid":"GO:1990705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cholangiocyte proliferation","synonyms":[{"name":"down regulation of cholangiocyte proliferation","type":"exact"},{"name":"down regulation of hepatoblast proliferation","type":"exact"},{"name":"down-regulation of cholangiocyte proliferation","type":"exact"},{"name":"down-regulation of hepatoblast proliferation","type":"exact"},{"name":"downregulation of cholangiocyte proliferation","type":"exact"},{"name":"downregulation of hepatoblast proliferation","type":"exact"},{"name":"inhibition of cholangiocyte proliferation","type":"narrow"},{"name":"inhibition of hepatoblast proliferation","type":"narrow"},{"name":"negative regulation of hepatoblast proliferation","type":"exact"}],"termid":"GO:1904055"}


id: PBO:0047753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"farnesyltransferase, CAAX box, beta","termid":"PBO:0047753"}


id: PBO:0004485
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.5.1.10","termid":"PBO:0004485"}


id: FYPO:0000300
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_00364:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00364","name":"rad3delta","uniquename":"SJAG_00364:allele-1"},"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_00429:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00429","name":"rad26delta","uniquename":"SJAG_00429:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_00993:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00993","name":"byr1delta","uniquename":"SJAG_00993:allele-1"},"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01143:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"711-723","gene_uniquename":"SJAG_01143","name":"mid1-delta(711-723 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hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"},"SJAG_01718:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01718","name":"byr2delta","uniquename":"SJAG_01718:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_01834:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01834","name":"pom152delta","uniquename":"SJAG_01834:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_01946:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01946","name":"cem1delta","uniquename":"SJAG_01946:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_02266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02266","name":"rad24delta","uniquename":"SJAG_02266:allele-1"},"SJAG_02379:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02379","name":"gap1delta","uniquename":"SJAG_02379:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02486:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02486","name":"ste6delta","uniquename":"SJAG_02486:allele-1"},"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-3":{"allele_type":"amino_acid_mutation","description":"S235A; S651","gene_uniquename":"SJAG_02763","name":"ned1S235A/S651","synonyms":[{"name":"refractory to phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-3"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_02763:allele-6":{"allele_type":"amino_acid_mutation","description":"S499A; S538A; T620A; T638A; S651A","gene_uniquename":"SJAG_02763","name":"ned1-5A","synonyms":[{"name":"refractory to potential proline-directed kinase phosphorylation","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-6"},"SJAG_02796:allele-1":{"allele_type":"amino_acid_mutation","description":"A343T","gene_uniquename":"SJAG_02796","name":"pyk1-A343T","uniquename":"SJAG_02796:allele-1"},"SJAG_02819:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02819","name":"efc25delta","uniquename":"SJAG_02819:allele-1"},"SJAG_02860:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02860","name":"wcs1delta","uniquename":"SJAG_02860:allele-1"},"SJAG_02923:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02923","name":"spk1delta","uniquename":"SJAG_02923:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03143","name":"sep1delta","uniquename":"SJAG_03143:allele-1"},"SJAG_03198:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03198","name":"oar2delta","uniquename":"SJAG_03198:allele-1"},"SJAG_03198:allele-2":{"allele_type":"amino_acid_mutation","description":"Y189D 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id: GO:2000739
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mesenchymal stem cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of stem cell differentiation","termid":"GO:2000736"},{"relation_name":"regulates","term_name":"mesenchymal stem cell differentiation","termid":"GO:0072497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesenchymal stem cell differentiation","termid":"GO:2000739"}


id: PBO:0041326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 2 open reading frame 78","termid":"PBO:0041326"}


id: MONDO:1010720
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any deficiency in fumarylacetoacetate hydrolase that occurs in pigs due to a mutation in the FAH gene created by genetic engineering or gene editing. Fumarylacetoacetate hydrolase is an enzyme that catalyzes the last step of tyrosine metabolism.","definition_xrefs":["OMIA:002078-9823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"metabolic disease, non-human animal","termid":"MONDO:1011331"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosinemia type 1, FAH-related, pig","synonyms":[{"name":"tyrosinemia type I, pig","type":"related"}],"termid":"MONDO:1010720","xrefs":{"Monarch":{"xref_id":"1010720"}}}


id: GO:0004228
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of gelatin type I and collagen types IV, V, VII, X. Cleaves the collagen-like sequence Pro-Gln-Gly-Ile-Ala-Gly-Gln at the Gly-Ile bond.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete gelatinase A activity (obsolete GO:0004228)","synonyms":[{"name":"3/4 collagenase activity","type":"related"},{"name":"72 kDa gelatinase type A","type":"related"},{"name":"72-kDa gelatinase activity","type":"narrow"},{"name":"MMP 2","type":"related"},{"name":"MMP-2","type":"exact"},{"name":"collagenase IV","type":"related"},{"name":"collagenase type IV","type":"related"},{"name":"gelatinase A activity","type":"exact"},{"name":"matrix metalloproteinase 2 activity","type":"related"},{"name":"matrix metalloproteinase 5","type":"related"},{"name":"type IV collagen metalloproteinase","type":"broad"},{"name":"type IV collagenase activity","type":"related"},{"name":"type IV collagenase/gelatinase activity","type":"related"}],"termid":"GO:0004228"}


id: GO:0180007
data:
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id: GO:0006801
data:
  {"annotated_genes":["SJAG_04788","SJAG_04399","SJAG_05181","SJAG_03653","SJAG_04632","SJAG_00668","SJAG_01734","SJAG_03303","SJAG_04403"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103507],"is_not":false,"summary":null,"term":"GO:0006801"},{"annotations":[88458,92616,109583,99654,109627,64688,57887,88880,68142,98774],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019430"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reactive oxygen species metabolic process","termid":"GO:0072593"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00668":null,"SJAG_01734":null,"SJAG_03303":null,"SJAG_03653":null,"SJAG_04399":null,"SJAG_04403":null,"SJAG_04632":null,"SJAG_04788":null,"SJAG_05181":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"superoxide metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"oxygen free radical metabolic process","type":"exact"},{"name":"oxygen free radical metabolism","type":"exact"},{"name":"superoxide free radical metabolic process","type":"exact"},{"name":"superoxide free radical metabolism","type":"exact"},{"name":"superoxide metabolism","type":"exact"}],"termid":"GO:0006801","terms_by_termid":{"GO:0006801":null,"GO:0019430":null}}


id: FYPO:0004954
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which cells contain more prospore membrane than normal. Excess prospore membrane may take the form of bubble-like structures continuous with the rest of the membrane.","definition_xrefs":["PMID:17951524","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal prospore membrane","termid":"FYPO:0004953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000121"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000631","FYPO:0000121","FYPO:0005447"],"is_obsolete":false,"name":"excess prospore membrane present","synonyms":[{"name":"excess forespore membrane present","type":"exact"},{"name":"forespore membrane bubble formation","type":"related"},{"name":"prospore membrane present in greater amount","type":"exact"}],"termid":"FYPO:0004954"}


id: GO:0080162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of auxins from endoplasmic reticulum to cytosol.","definition_xrefs":["PMID:19506555"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"},{"relation_name":"is_a","term_name":"auxin transport","termid":"GO:0060918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"endoplasmic reticulum to cytosol auxin transport","synonyms":[{"name":"intracellular auxin transport","type":"broad"}],"termid":"GO:0080162"}


id: PBO:0047511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM domain containing kindlin 3","termid":"PBO:0047511"}


id: MONDO:0000792
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete zebrafish allergy (obsolete MONDO:0000792)","secondary_identifiers":["DOID:0060517"],"termid":"MONDO:0000792","xrefs":{"Monarch":{"xref_id":"0000792"}}}


id: PBO:0055390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2820","termid":"PBO:0055390"}


id: PBO:0018037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexose transmembrane transporter Ght2","termid":"PBO:0018037"}


id: PBO:0043223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chloride channel accessory 2","termid":"PBO:0043223"}


id: MONDO:0002888
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the intraorbital structures.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"orbital cancer","termid":"MONDO:0002889"},{"relation_name":"is_a","term_name":"meningioma","termid":"MONDO:0016642"},{"relation_name":"is_a","term_name":"orbit neoplasm","termid":"MONDO:0024611"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intraorbital meningioma","secondary_identifiers":["DOID:4141","NCIT:C6778","UMLS:C1334261","MEDGEN:272773"],"synonyms":[{"name":"intraorbital meningioma","type":"exact"}],"termid":"MONDO:0002888","xrefs":{"Monarch":{"xref_id":"0002888"}}}


id: PBO:0046498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERH pseudogene 1","termid":"PBO:0046498"}


id: PBO:0046188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engulfment and cell motility 2 pseudogene 1","termid":"PBO:0046188"}


id: GO:0005809
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete Golgi-vacuole transport vesicle (obsolete GO:0005809)","synonyms":[{"name":"Golgi-vacuole transport vesicle","type":"exact"}],"termid":"GO:0005809"}


id: PBO:0047857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, 5-azacytidine type, common, fra(1)(q12)","termid":"PBO:0047857"}


id: PBO:0044361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 49","termid":"PBO:0044361"}


id: PBO:0089042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-L, N-acetylglucosaminylphosphatidyl inositoldeacetylase","termid":"PBO:0089042"}


id: SO:0000371
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transposon that encodes function required for conjugation.","direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_transposon","termid":"SO:0000182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conjugative_transposon","synonyms":[{"name":"conjugative transposon","type":"exact"}],"termid":"SO:0000371"}


id: GO:0005851
data:
  {"annotated_genes":["SJAG_01576","SJAG_02307","SJAG_02471","SJAG_03678","SJAG_01659"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[92249,96151,97301,99999,113468],"is_not":false,"summary":null,"term":"GO:0005851"}]},"cv_name":"cellular_component","definition":"A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon.","definition_xrefs":["PMID:9438375"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01576":null,"SJAG_01659":null,"SJAG_02307":null,"SJAG_02471":null,"SJAG_03678":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"eukaryotic translation initiation factor 2B complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"eIF-2B","type":"exact"},{"name":"eif2B","type":"exact"}],"termid":"GO:0005851","terms_by_termid":{"GO:0005851":null}}


id: MONDO:0002123
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Deposition of calcium in the tissues. It may be the result of a metabolic disorder or long-standing infection, or it may be associated with the presence of cancer.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium metabolic disease","termid":"MONDO:0005557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"calcinosis","secondary_identifiers":["DOID:182","HP:0003761","ICD9:275.49","MESH:D002114","NCIT:C3672","SCTID:6595006","UMLS:C0006663","MEDGEN:709","icd11.foundation:1374802956"],"synonyms":[{"name":"calcification","type":"exact"},{"name":"calcium deposit(s)","type":"exact"},{"name":"deposit(s), calcium","type":"exact"},{"name":"macrocalcification","type":"exact"},{"name":"pathologic calcification","type":"exact"},{"name":"pathologically calcified structure","type":"exact"}],"termid":"MONDO:0002123","xrefs":{"Monarch":{"xref_id":"0002123"}}}


id: MONDO:0004758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A localized defect in the visual field bordered by an area of normal vision. This occurs with a variety of eye diseases (e.g., retinal diseases and glaucoma); optic nerve diseases, and other conditions.","definition_xrefs":["MESH:D012607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"scotoma","secondary_identifiers":["DOID:9335","HP:0000575","MEDGEN:19902","ICD9:368.43","ICD9:368.45","ICD9:368.44","UMLS:C0036454","ICD9:368.42"],"synonyms":[{"name":"blind spot area scotoma","type":"exact"},{"name":"enlarged angioscotoma","type":"exact"},{"name":"enlarged blind spot","type":"exact"},{"name":"enlarged paracaecal scotoma","type":"exact"},{"name":"generalised visual field contraction or constriction","type":"exact"},{"name":"generalized visual field contraction or constriction","type":"exact"},{"name":"scotoma","type":"exact"},{"name":"scotoma (disease)","type":"exact"},{"name":"scotoma of blind spot area","type":"exact"},{"name":"sector or arcuate visual field defects","type":"exact"}],"termid":"MONDO:0004758","xrefs":{"Monarch":{"xref_id":"0004758"}}}


id: MONDO:0017198
data:
  {"annotated_genes":["SJAG_00516","SJAG_02342","SJAG_00993","SJAG_01183","SJAG_01181"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85883],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009815"},{"annotations":[84976,84975,84977],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007970"},{"annotations":[86049],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957262"}]},"cv_name":"mondo","definition":"Osteopetrosis, also known as marble bone disease, is a descriptive term that refers to a group of rare, heritable disorders of the skeleton characterized by increased bone density on radiographs.","definition_xrefs":["Orphanet:2781"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with increased bone density (obsolete MONDO:0019703)","termid":"MONDO:0019703"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"familial osteosclerosis","termid":"MONDO:0042973"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00516":null,"SJAG_00993":null,"SJAG_01181":null,"SJAG_01183":null,"SJAG_02342":null},"genotype_count":0,"is_obsolete":false,"name":"osteopetrosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MedDRA:10031280","icd11.foundation:1498426606","MEDGEN:18223","MESH:D010022","NCIT:C26840","GARD:4155","ICD9:756.52","NORD:1538","SCTID:1926006","UMLS:C0029454","NANDO:1200998","DOID:13533","HP:0011002","NANDO:2201013"],"synonyms":[{"name":"Albers-Schoenberg disease","type":"related"},{"name":"Albers-Schonberg disease","type":"exact"},{"name":"marble bone","type":"exact"},{"name":"marble bone disease","type":"exact"},{"name":"marble bones","type":"exact"},{"name":"osteopetroses","type":"related"},{"name":"osteopetrosis","type":"exact"},{"name":"osteopetrosis (disease)","type":"exact"},{"name":"osteopetrosis and related disorders","type":"related"},{"name":"osteosclerosis fragilis","type":"related"}],"termid":"MONDO:0017198","terms_by_termid":{"MONDO:0007970":null,"MONDO:0009815":null,"MONDO:0957262":null},"xrefs":{"Monarch":{"xref_id":"0017198"}}}


id: PBO:0040001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 13B","termid":"PBO:0040001"}


id: PBO:0077886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor protein p63 regulated 1","termid":"PBO:0077886"}


id: PBO:0074303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLX1B-SULT1A4 readthrough (NMD candidate)","termid":"PBO:0074303"}


id: PBO:0044883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENN domain containing 10","termid":"PBO:0044883"}


id: PBO:0075253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 18 pseudogene 5","termid":"PBO:0075253"}


id: PBO:0049305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase mu 5 pseudogene 1","termid":"PBO:0049305"}


id: PBO:0004575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex subunit Hfi1","termid":"PBO:0004575"}


id: FYPO:0000961
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing sorbitol.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0002060","FYPO:0000003","FYPO:0000257","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on sorbitol","synonyms":[{"name":"normal cell population growth in presence of sorbitol","type":"exact"},{"name":"normal cell population growth on glucitol","type":"exact"},{"name":"normal cell population growth on sorbitol","type":"exact"},{"name":"normal cellular response to sorbitol","type":"related"},{"name":"normal vegetative cell population growth on sorbitol","type":"exact"}],"termid":"FYPO:0000961"}


id: MONDO:1010802
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Brachydactyly that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brachydactyly, non-human animal","termid":"MONDO:1010156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly, pig","secondary_identifiers":["OMIA:000146-9823"],"termid":"MONDO:1010802","xrefs":{"Monarch":{"xref_id":"1010802"}}}


id: PBO:0069028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 273, pseudogene","termid":"PBO:0069028"}


id: MONDO:0002624
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare aggressive malignant smooth muscle neoplasm, arising from the bone. It is characterized by a proliferation of neoplastic spindle cells.","definition_xrefs":["NCIT:C7154"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"osteosarcoma","termid":"MONDO:0009807"},{"relation_name":"is_a","term_name":"leiomyosarcoma","termid":"MONDO:0005058"},{"relation_name":"is_a","term_name":"bone sarcoma","termid":"MONDO:0021054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"bone leiomyosarcoma","secondary_identifiers":["DOID:3367","UMLS:C1332579","MEDGEN:234043"],"synonyms":[{"name":"bone leiomyosarcoma","type":"exact"},{"name":"bone tissue leiomyosarcoma","type":"exact"},{"name":"leiomyosarcoma of bone","type":"exact"},{"name":"leiomyosarcoma of bone tissue","type":"exact"}],"termid":"MONDO:0002624","xrefs":{"Monarch":{"xref_id":"0002624"}}}


id: MONDO:0016355
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Semilobar holoprosencephaly is one of the classical forms of holoprosencephaly (HPE) in which the left and right frontal and parietal lobes are fused and the interhemispheric fissure is only present posteriorly.","definition_xrefs":["Orphanet:220386"],"gene_count":0,"genotype_count":0,"name":"obsolete semilobar holoprosencephaly (obsolete MONDO:0016355)","termid":"MONDO:0016355","xrefs":{"Monarch":{"xref_id":"0016355"}}}


id: GO:0008681
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-methoxy-6-(all-trans-octaprenyl)phenol + H+ + NADPH + O2 = 2-methoxy-6-all-trans-octaprenyl-1,4-benzoquinol + H2O + NADP+.","definition_xrefs":["PMID:4572721","PMID:27822549","RHEA:29407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"2-octaprenyl-6-methoxyphenol hydroxylase activity","secondary_identifiers":["MetaCyc:2-OCTAPRENYL-6-METHOXYPHENOL-HYDROX-RXN"],"termid":"GO:0008681"}


id: GO:0003088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secretion of epinephrine into the bloodstream modulates the force of heart muscle contraction.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of the force of heart contraction by epinephrine","termid":"GO:0003059"},{"relation_name":"part_of","term_name":"positive regulation of the force of heart contraction by circulating epinephrine-norepinephrine","termid":"GO:0003089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of the force of heart contraction by circulating epinephrine","synonyms":[{"name":"increased force of heart contraction by circulating adrenaline","type":"related"},{"name":"increased force of heart contraction by epinephrine in the bloodstream","type":"exact"},{"name":"positive regulation of heart contraction by circulating adrenaline","type":"related"},{"name":"positive regulation of heart contraction by circulating epinephrine","type":"related"}],"termid":"GO:0003088"}


id: PBO:0028408
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_catalase_activity","termid":"PBO:0028408"}


id: MONDO:0009447
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ichthyosis, split hairs, and amino aciduria","secondary_identifiers":["MESH:C565471","OMIM:242550","UMLS:C1855786","MEDGEN:344576"],"synonyms":[{"name":"ichthyosis, split hairs, and amino aciduria","type":"exact"}],"termid":"MONDO:0009447","xrefs":{"Monarch":{"xref_id":"0009447"}}}


id: GO:1902484
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a Sertoli cell.","definition_xrefs":["GOC:TermGenie","GOC:ic","PMID:17761895"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell apoptotic process","termid":"GO:1904019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Sertoli cell apoptotic process","synonyms":[{"name":"Sertoli cell apoptosis","type":"narrow"}],"termid":"GO:1902484"}


id: GO:0051014
data:
  {"annotated_genes":["SJAG_03455","SJAG_03025","SJAG_03380"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92021,100421],"is_not":false,"summary":null,"term":"GO:0051014"},{"annotations":[90356],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071846"}]},"cv_name":"biological_process","definition":"The process in which an actin filament is broken down into smaller filaments.","definition_xrefs":["PMID:14657234","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament-based process","termid":"GO:0030029"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03025":null,"SJAG_03380":null,"SJAG_03455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"actin filament severing","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"F-actin severing","type":"exact"},{"name":"actin filament severing activity","type":"related"},{"name":"barbed-end actin capping/severing activity","type":"related"}],"termid":"GO:0051014","terms_by_termid":{"GO:0051014":null,"GO:0071846":null}}


id: MONDO:0035775
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCNK-related neurodevelopmental disorder-severe intellectual disability-facial dysmorphism syndrome","secondary_identifiers":["UMLS:C5681527","MEDGEN:1842919","Orphanet:600668","GARD:22417"],"termid":"MONDO:0035775","xrefs":{"Monarch":{"xref_id":"0035775"}}}


id: MONDO:0049221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myopia","termid":"MONDO:0001384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"myopia 26, X-linked, female-limited","secondary_identifiers":["OMIM:301010","MEDGEN:1618364","UMLS:C4538795"],"synonyms":[{"name":"MYP26","type":"related"},{"name":"myopia 26, X-linked, female-limited","type":"exact"}],"termid":"MONDO:0049221","xrefs":{"Monarch":{"xref_id":"0049221"}}}


id: MONDO:0971007
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neuroocular syndrome","termid":"MONDO:0859193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"neuroocular syndrome 1","secondary_identifiers":["Orphanet:659904","OMIM:619539"],"termid":"MONDO:0971007","xrefs":{"Monarch":{"xref_id":"0971007"}}}


id: GO:0036410
data:
  {"annotated_genes":["SJAG_04815","SJAG_01385","SJAG_02165","SJAG_02629"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[90232,99172,103933,104801],"is_not":false,"summary":null,"term":"GO:0036410"}]},"cv_name":"cellular_component","definition":"A protein complex that can catalyze the acetylation of lysine at position 14 in histone H3, and contains Mst2 as the catalytic subunit. In fission yeast, contains at least Mst2, Nto1, Ptf2, Ptf1 and Eaf6.","definition_xrefs":["GOC:vw","PMID:21289066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3-K14 acetyltransferase complex","termid":"GO:0036409"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01385":null,"SJAG_02165":null,"SJAG_02629":null,"SJAG_04815":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005694","GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"Mst2 histone acetyltransferase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Mst2 H3K14 acetyltransferase complex","type":"exact"},{"name":"Mst2 complex","type":"exact"},{"name":"Mst2 histone H3K14 acetyltransferase complex","type":"exact"}],"termid":"GO:0036410","terms_by_termid":{"GO:0036410":null}}


id: GO:0098920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by a lipid ligand.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retrograde trans-synaptic signaling","termid":"GO:0098917"},{"relation_name":"is_a","term_name":"trans-synaptic signaling by lipid","termid":"GO:0099541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"retrograde trans-synaptic signaling by lipid","termid":"GO:0098920"}


id: PBO:0055183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2607","termid":"PBO:0055183"}


id: GO:0048440
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the carpel over time, from its formation to the mature structure. A carpel is an organ (generally believed to be a modified foliar unit) at the centre of a flower, bearing one or more ovules and having its margins fused together or with other carpels to enclose the ovule in an ovary, and consisting also of a stigma and usually a style.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"floral organ development","termid":"GO:0048437"},{"relation_name":"is_a","term_name":"phyllome development","termid":"GO:0048827"},{"relation_name":"part_of","term_name":"gynoecium development","termid":"GO:0048467"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carpel development","secondary_identifiers":["GO:0048429"],"termid":"GO:0048440"}


id: GO:0035394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of chemokine (C-X-C motif) ligand 9.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chemokine production","termid":"GO:0032642"},{"relation_name":"regulates","term_name":"chemokine (C-X-C motif) ligand 9 production","termid":"GO:0035393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of chemokine (C-X-C motif) ligand 9 production","synonyms":[{"name":"regulation of CXCL9 production","type":"exact"},{"name":"regulation of MIG production","type":"exact"}],"termid":"GO:0035394"}


id: PBO:0051161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-42 (pseudogene)","termid":"PBO:0051161"}


id: PBO:0087288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Silenced copy of a1 at HMR; homeobox corepressor that interacts with Alpha2p to repress haploid-specific gene transcription in diploid cells","termid":"PBO:0087288"}


id: PBO:0091992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel, beta subunit, aldo-keto reductase","termid":"PBO:0091992"}


id: PBO:0028843
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_heterochromatin_assembly","termid":"PBO:0028843"}


id: PBO:0065261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 23 domain containing 2","termid":"PBO:0065261"}


id: MONDO:0007467
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA, low-repetitive sequences of","secondary_identifiers":["OMIM:126390","UMLS:C1852041","MEDGEN:342148"],"synonyms":[{"name":"DNA, low-repetitive sequences of","type":"exact"},{"name":"repetitive sequence DNA","type":"related"}],"termid":"MONDO:0007467","xrefs":{"Monarch":{"xref_id":"0007467"}}}


id: GO:1990895
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein localization to cell cortex of cell tip.","definition_xrefs":["GOC:vw","PMID:26150232"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to cell tip","termid":"GO:1903066"},{"relation_name":"is_a","term_name":"regulation of protein localization to cell cortex","termid":"GO:1904776"},{"relation_name":"regulates","term_name":"protein localization to cell cortex of cell tip","termid":"GO:1990896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein localization to cell cortex of cell tip","termid":"GO:1990895"}


id: PBO:0086258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that regulates meiotic SPB cohesion and telomere clustering; localizes to both spindle pole bodies (SPBs) and telomeres; required for bouquet formation, effective homolog pairing, ordered cross-over distribution, sister chromatid cohesion at meiotic telomeres, chromosomal segregation and telomere-led rapid prophase movement","termid":"PBO:0086258"}


id: GO:0008446
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H2O.","definition_xrefs":["EC:4.2.1.47","RHEA:23820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"GDP-mannose 4,6-dehydratase activity","secondary_identifiers":["KEGG_REACTION:R00888","Reactome:R-HSA-6787632","MetaCyc:GDPMANDEHYDRA-RXN"],"synonyms":[{"name":"GDP-D-mannose 4,6-dehydratase activity","type":"related"},{"name":"GDP-D-mannose dehydratase activity","type":"related"},{"name":"GDP-mannose 4,6-hydro-lyase (GDP-4-dehydro-6-deoxy-D-mannose-forming)","type":"related"},{"name":"GDP-mannose 4,6-hydro-lyase activity","type":"related"},{"name":"GDPmannose 4,6-dehydratase activity","type":"related"},{"name":"Gmd","type":"related"},{"name":"guanosine 5'-diphosphate-D-mannose oxidoreductase activity","type":"related"},{"name":"guanosine diphosphomannose 4,6-dehydratase activity","type":"related"},{"name":"guanosine diphosphomannose oxidoreductase activity","type":"related"}],"termid":"GO:0008446"}


id: SO:0000353
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assembly","termid":"SO:0001248"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence_assembly","secondary_identifiers":["http://en.wikipedia.org/wiki/Sequence_assembly"],"synonyms":[{"name":"sequence assembly","type":"exact"}],"termid":"SO:0000353"}


id: GO:0060563
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which epiblast cells acquire specialized features of neuroepithelial cells.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"columnar/cuboidal epithelial cell differentiation","termid":"GO:0002065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuroepithelial cell differentiation","termid":"GO:0060563"}


id: MONDO:0017215
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Calciphylaxis is a disease in which blood vessels (veins and arteries) become blocked by a build-up of calcium in the walls of the vessels, preventing blood from flowing to the skin or internal organs. The lack of blood flow (ischemia) damages healthy tissue and causes itto die (necrosis). The most obvious and frequent symptom of calciphylaxis is damage to the skin, as ulcers can developand become infected easily. Calciphylaxis can also affect fat tissue, internal organs, and skeletal muscle, causing infections, pain, and organ failure.These symptoms are often irreversible, and many individuals with calciphylaxis may not survive more thana few months after they are diagnosed due to infection that spreads throughout the body (sepsis), or organ failure. The exact cause of calciphylaxis is unknown. Treatments may include medications to reduce pain, antibiotics to treat infections, and various approaches to preventing the development or worsening of this condition.","definition_xrefs":["GARD:0005980"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcinosis","termid":"MONDO:0002123"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"calciphylaxis","secondary_identifiers":["MedDRA:10051714","DOID:4734","icd11.foundation:574291789","MESH:D002115","Orphanet:280062","SCTID:237900002","UMLS:C0006666","MEDGEN:2404","NCIT:C84607","GARD:5980","ICD9:275.49"],"synonyms":[{"name":"idiopathic calciphylaxis","type":"related"}],"termid":"MONDO:0017215","xrefs":{"Monarch":{"xref_id":"0017215"}}}


id: FYPO:0008047
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in meiosis in which dimethylation of lysine at position 4 of histone H3 is decreased at the centromere.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein modification during meiotic cell cycle","termid":"FYPO:0006459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H3-K4 dimethylation  at centromere during meiosis","termid":"FYPO:0008047"}


id: MONDO:0003223
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A solitary fibrous tumor/hemangiopericytoma that arises from the meninges.","definition_xrefs":["NCIT:C4660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemangiopericytoma","termid":"MONDO:0005094"},{"relation_name":"is_a","term_name":"malignant tumor of meninges","termid":"MONDO:0021322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"meninges hemangiopericytoma","secondary_identifiers":["MEDGEN:83894","SCTID:277522009","UMLS:C0349622","ONCOTREE:HPCCNS","DOID:4957"],"synonyms":[{"name":"hemangiopericytoma of meninges","type":"exact"},{"name":"hemangiopericytoma of the central nervous system","type":"related"},{"name":"hemangiopericytoma of the meninges","type":"exact"},{"name":"meningeal cluster hemangiopericytoma","type":"exact"},{"name":"meningeal cluster spindle cell tumor","type":"exact"},{"name":"meningeal cluster spindle cell tumour","type":"exact"},{"name":"meningeal hemangiopericytoma","type":"exact"},{"name":"meningeal solitary fibrous tumor/hemangiopericytoma","type":"exact"},{"name":"meninges hemangiopericytoma","type":"exact"}],"termid":"MONDO:0003223","xrefs":{"Monarch":{"xref_id":"0003223"}}}


id: PBO:0054562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1964","termid":"PBO:0054562"}


id: GO:0051052
data:
  {"annotated_genes":["SJAG_03219","SJAG_01068","SJAG_04457","SJAG_02822","SJAG_02194","SJAG_00247","SJAG_03160","SJAG_00266","SJAG_03720","SJAG_00364","SJAG_03048","SJAG_00369","SJAG_01677","SJAG_00573","SJAG_02104","SJAG_03957","SJAG_02592","SJAG_02724","SJAG_03300","SJAG_01210","SJAG_01584","SJAG_03417","SJAG_04205","SJAG_01205","SJAG_03097","SJAG_04671","SJAG_00823","SJAG_04855","SJAG_03997","SJAG_00995","SJAG_03438","SJAG_03624","SJAG_02162","SJAG_03695","SJAG_00100","SJAG_02214","SJAG_02074"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010846"},{"annotations":[101867],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001033"},{"annotations":[111251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904332"},{"annotations":[108378,116345],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903464"},{"annotations":[97263,101871,108379],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903467"},{"annotations":[107460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045128"},{"annotations":[116772,111528],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045739"},{"annotations":[111529,116773,102824],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903468"},{"annotations":[109676,93366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000781"},{"annotations":[106896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001034"},{"annotations":[101877,88537,115731,106110],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904514"},{"annotations":[107844,101880],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905263"},{"annotations":[95233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090297"},{"annotations":[101881],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903465"},{"annotations":[91659],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045951"},{"annotations":[88476,115917,105619],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120292"},{"annotations":[88538],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010845"},{"annotations":[96677],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032215"},{"annotations":[109818,108571],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000018"},{"annotations":[109677,93367],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006282"},{"annotations":[106070,90393],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000779"},{"annotations":[108807],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010569"},{"annotations":[115783,88645,93863],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010520"},{"annotations":[102728],"is_not":false,"rel_names":["regulates","is_a"],"summary":null,"term":"GO:1902681"},{"annotations":[94573],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032210"},{"annotations":[108004,101779,106123],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043111"},{"annotations":[98862,106124,102729,108005],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0011000"},{"annotations":[101780,114518,98863],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031582"},{"annotations":[98864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090001"},{"annotations":[101781],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071807"},{"annotations":[115732],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062209"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving DNA.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleobase-containing compound metabolic process","termid":"GO:0019219"},{"relation_name":"is_a","term_name":"regulation of macromolecule metabolic process","termid":"GO:0060255"},{"relation_name":"regulates","term_name":"DNA metabolic 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process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of DNA metabolism","type":"exact"}],"termid":"GO:0051052","terms_by_termid":{"GO:0000018":null,"GO:0006282":null,"GO:0010520":null,"GO:0010569":null,"GO:0010845":null,"GO:0010846":null,"GO:0011000":null,"GO:0031582":null,"GO:0032210":null,"GO:0032215":null,"GO:0043111":null,"GO:0045128":null,"GO:0045739":null,"GO:0045951":null,"GO:0062209":null,"GO:0071807":null,"GO:0090001":null,"GO:0090297":null,"GO:0120292":null,"GO:1902681":null,"GO:1903464":null,"GO:1903465":null,"GO:1903467":null,"GO:1903468":null,"GO:1904332":null,"GO:1904514":null,"GO:1905263":null,"GO:2000779":null,"GO:2000781":null,"GO:2001033":null,"GO:2001034":null}}


id: PATO:0001195
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity.","definition_xrefs":["PATOC:nw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proximal to","termid":"PATO:0001195"}


id: PBO:0039896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho/Rac guanine nucleotide exchange factor 2","termid":"PBO:0039896"}


id: GO:0004188
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of a Pro-Xaa bond by a serine-type peptidase mechanism to release a C-terminal amino acid.","definition_xrefs":["EC:3.4.16.2"],"gene_count":0,"genotype_count":0,"name":"obsolete serine-type Pro-X carboxypeptidase activity (obsolete GO:0004188)","synonyms":[{"name":"PCP","type":"related"},{"name":"aminoacylproline carboxypeptidase activity","type":"related"},{"name":"angiotensinase C activity","type":"narrow"},{"name":"lysosomal Pro-X carboxypeptidase activity","type":"narrow"},{"name":"lysosomal Pro-Xaa carboxypeptidase activity","type":"related"},{"name":"lysosomal carboxypeptidase C activity","type":"narrow"},{"name":"peptidylprolylamino acid carboxypeptidase activity","type":"related"},{"name":"proline carboxypeptidase activity","type":"related"},{"name":"proline-specific carboxypeptidase P","type":"related"},{"name":"prolyl carboxypeptidase activity","type":"related"},{"name":"serine-type Pro-X carboxypeptidase activity","type":"exact"}],"termid":"GO:0004188"}


id: PBO:0040906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMS1 pseudogene 10","termid":"PBO:0040906"}


id: PBO:0084692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial dicarboxylate carrier; integral membrane protein, catalyzes a dicarboxylate-phosphate exchange across the inner mitochondrial membrane, transports cytoplasmic dicarboxylates into the mitochondrial matrix","termid":"PBO:0084692"}


id: GO:0047744
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-amino-4-chloro-2-(2,3-dihydroxyphenyl)pyridazin-3(2H)-one + O2 = 5-amino-4-chloro-2-(2-hydroxymuconoyl)pyridazin-3(2H)-one + 2 H+.","definition_xrefs":["RHEA:20449","EC:1.13.11.36"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"chloridazon-catechol dioxygenase activity","secondary_identifiers":["MetaCyc:CHLORIDAZON-CATECHOL-DIOXYGENASE-RXN","KEGG_REACTION:R04602"],"synonyms":[{"name":"5-amino-4-chloro-2-(2,3-dihydroxyphenyl)-3(2H)-pyridazinone 1,2-oxidoreductase (decyclizing)","type":"related"}],"termid":"GO:0047744"}


id: PBO:0027423
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_aseptate_vegetative_cell","termid":"PBO:0027423"}


id: GO:0060423
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pattern specification process that results in the spatial subdivision of an axis or axes along the foregut to define an area or volume in which specific patterns of cell differentiation will take place.","definition_xrefs":["GOC:mtg_lung","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior/posterior pattern specification","termid":"GO:0009952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"foregut regionalization","termid":"GO:0060423"}


id: MONDO:0024988
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A reproductive organ benign neoplasm that arises in the ovary or testis and that is composed of granulosa cells, Leydig cells, Sertoli cells, and/or fibroblasts.","definition_xrefs":["DOID:0080368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign reproductive system neoplasm","termid":"MONDO:0000383"},{"relation_name":"is_a","term_name":"sex cord-stromal tumor","termid":"MONDO:0006055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sex cord-stromal benign neoplasm","termid":"MONDO:0024988","xrefs":{"Monarch":{"xref_id":"0024988"}}}


id: PBO:0040369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk-membrane subunit b pseudogene 6","termid":"PBO:0040369"}


id: PBO:0030701
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0030701"}


id: PBO:0027409
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_catabolic_process_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0027409"}


id: MONDO:0014973
data:
  {"annotated_genes":["SJAG_02679","SJAG_01875"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86473,86474],"is_not":false,"summary":null,"term":"MONDO:0014973"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01875":null,"SJAG_02679":null},"genotype_count":0,"is_obsolete":false,"name":"sudden cardiac failure, infantile","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:617222","MEDGEN:934631","UMLS:C4310664"],"synonyms":[{"name":"SCFI","type":"exact"},{"name":"sudden Cardiac failure, infantile","type":"exact"},{"name":"sudden cardiac failure, infantile; SCFI","type":"exact"}],"termid":"MONDO:0014973","terms_by_termid":{"MONDO:0014973":null},"xrefs":{"Monarch":{"xref_id":"0014973"}}}


id: MONDO:0008359
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Radio-renal syndrome is a rare developmental defect during embryogenesis characterized by variable upper limb reduction defects and renal anomalies. Patients typically present absence/hypoplasia of digits, radii and/or ulnae, short stature and mild external ear malformation, as well as kidney agenesis or ectopia. There have been no further descriptions in the literature since 1983.","definition_xrefs":["Orphanet:3015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"radio-renal syndrome","secondary_identifiers":["GARD:224","MESH:C536267","MEDGEN:419723","OMIM:179280","SCTID:766765009","UMLS:C2931146"],"synonyms":[{"name":"radial-renal syndrome","type":"related"},{"name":"radio renal syndrome","type":"related"}],"termid":"MONDO:0008359","xrefs":{"Monarch":{"xref_id":"0008359"}}}


id: GO:1901007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving (S)-scoulerine.","definition_xrefs":["UniPathway:UPA00319","GOC:yaf","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete (S)-scoulerine metabolic process (obsolete GO:1901007)","synonyms":[{"name":"(S)-scoulerine metabolism","type":"exact"}],"termid":"GO:1901007"}


id: MONDO:0014981
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary immunodeficiency disease in which the cause of the disease is a mutation in the BCL11B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"},{"relation_name":"is_a","term_name":"familial severe combined immunodeficiency","termid":"MONDO:0031520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 49","secondary_identifiers":["DOID:0111979","MEDGEN:934623","OMIM:617237","UMLS:C4310656"],"synonyms":[{"name":"BCL11B primary immunodeficiency disease","type":"exact"},{"name":"IMD49","type":"exact"},{"name":"SCID, T cell-Negative, B cell-Positive, Nk cell-Positive, with intellectual disability, spasticity, and craniofacial abnormalities","type":"related"},{"name":"immunodeficiency 49","type":"exact"},{"name":"immunodeficiency 49; IMD49","type":"exact"},{"name":"immunodeficiency type 49","type":"exact"},{"name":"primary immunodeficiency disease caused by mutation in BCL11B","type":"exact"},{"name":"severe combined immunodeficiency, T cell-Negative, B cell-Positive, Nk cell-Positive, with intellectual disability, spasticity, and craniofacial abnormalities","type":"related"}],"termid":"MONDO:0014981","xrefs":{"Monarch":{"xref_id":"0014981"}}}


id: GO:0071127
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha9-beta1 integrin complex bound to osteopontin.","definition_xrefs":["PMID:16005200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"alpha9-beta1 integrin-osteopontin complex","synonyms":[{"name":"ITGA9-ITGB1-SPP1 complex","type":"narrow"}],"termid":"GO:0071127"}


id: PBO:0071657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37","termid":"PBO:0071657"}


id: PBO:0029311
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_valproic_acid","termid":"PBO:0029311"}


id: MONDO:0006646
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, slow-growing neoplasm that arises from the dermis or subcutaneous tissue. It is characterized by the presence of well-differentiated smooth muscle cells which are arranged around numerous vessels.","definition_xrefs":["NCIT:C3747"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"leiomyoma","termid":"MONDO:0001572"},{"relation_name":"is_a","term_name":"benign perivascular tumor","termid":"MONDO:0003342"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angioleiomyoma","secondary_identifiers":["MEDGEN:60202","MESH:D018229","DOID:4265","UMLS:C0206653","ICDO:8894/0","EFO:1000084"],"synonyms":[{"name":"angioleiomyoma","type":"exact"},{"name":"angiomyoma","type":"exact"},{"name":"angiomyoma (morphologic abnormality)","type":"exact"},{"name":"vascular leiomyoma","type":"exact"}],"termid":"MONDO:0006646","xrefs":{"Monarch":{"xref_id":"0006646"}}}


id: MONDO:0011463
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, genetic, autosomal recessive axonal hereditary motor and sensory neuropathy disease characterized by prenatal onset of a severe sensorimotor axonal polyneuropathy (reflected by reduced fetal movement and polyhydramnios), manifesting, at birth, with respiratory failure requiring mechanical ventilation, profound muscular hypotonia, rapidly progressing distal muscle weakness, and absent deep tendon reflexes, in the absence of contractures, leading to death before 8 months of age. Neuropathological findings show severe loss of large- and medium-sized myelinated fibers without signs of demyelination.","definition_xrefs":["Orphanet:538096"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyneuropathy, lethal neonatal, axonal sensorimotor, autosomal recessive","secondary_identifiers":["MESH:C565773","OMIM:604431","GARD:17976","MEDGEN:348918","UMLS:C1858353"],"synonyms":[{"name":"polyneuropathy, lethal neonatal, axonal sensorimotor, autosomal recessive","type":"exact"}],"termid":"MONDO:0011463","xrefs":{"Monarch":{"xref_id":"0011463"}}}


id: GO:0065004
data:
  {"annotated_genes":["SJAG_02664","SJAG_03048","SJAG_03867","SJAG_03619","SJAG_01808","SJAG_03285","SJAG_00756","SJAG_02119","SJAG_03217","SJAG_01823","SJAG_01523","SJAG_01771","SJAG_00045","SJAG_00741","SJAG_04038","SJAG_01378","SJAG_02872","SJAG_02513","SJAG_04638","SJAG_04995","SJAG_01207","SJAG_02708","SJAG_00766","SJAG_04581","SJAG_00684","SJAG_00757","SJAG_04879","SJAG_03905","SJAG_05321","SJAG_02908","SJAG_02691","SJAG_04696","SJAG_00307","SJAG_01837","SJAG_02303","SJAG_02465","SJAG_04530","SJAG_04654","SJAG_04274","SJAG_03900","SJAG_03221","SJAG_02198","SJAG_02174","SJAG_02667","SJAG_02267","SJAG_01410","SJAG_00327","SJAG_02906","SJAG_01475","SJAG_00718","SJAG_04547","SJAG_03956","SJAG_02813","SJAG_01611","SJAG_02079","SJAG_03220","SJAG_04257","SJAG_03095","SJAG_01708","SJAG_03120","SJAG_03183","SJAG_05273","SJAG_02607","SJAG_00692","SJAG_02458","SJAG_00247","SJAG_00939","SJAG_04177","SJAG_02074","SJAG_04272","SJAG_04989","SJAG_03685","SJAG_00873","SJAG_03007"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98642,110670,88347,106835,105853,117196,92272,112609,113715,118349,102407,94182,114577,101567,118313,94956,89164,89542,115966,98890],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034080"},{"annotations":[106837,113060,114902,109437],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140529"},{"annotations":[107147,92154,101693,95659,100041,98556,109789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000730"},{"annotations":[105040,111674,90260,116944,104969,113047,109807],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051382"},{"annotations":[102821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140530"},{"annotations":[96407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000707"},{"annotations":[107152,109795],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010772"},{"annotations":[110051,89925,98923],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902977"},{"annotations":[102823,110052,114517],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902985"},{"annotations":[117447],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905560"},{"annotations":[107221,94556,114039,95933],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006334"},{"annotations":[108469],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006294"},{"annotations":[101878,116170,89126],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905561"},{"annotations":[89185,114683],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0045899"},{"annotations":[95227,63525,108640,111424],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001188"},{"annotations":[87817,86862,95516,88078,66862,107986,88758,114292,114883,116841,89385,93630],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051123"},{"annotations":[102569,115702],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070898"},{"annotations":[107607,115445,99225],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905324"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of proteins and DNA molecules to form a protein-DNA complex.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"is_a","term_name":"protein-DNA complex 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complex assembly","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"DNA-protein complex assembly","type":"exact"}],"termid":"GO:0065004","terms_by_termid":{"GO:0000707":null,"GO:0000730":null,"GO:0001188":null,"GO:0006294":null,"GO:0006334":null,"GO:0010772":null,"GO:0034080":null,"GO:0045899":null,"GO:0051123":null,"GO:0051382":null,"GO:0070898":null,"GO:0140529":null,"GO:0140530":null,"GO:1902977":null,"GO:1902985":null,"GO:1905324":null,"GO:1905560":null,"GO:1905561":null}}


id: PBO:0059252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MRPL20 antisense RNA 1","termid":"PBO:0059252"}


id: MONDO:0008633
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An intermediate form of cryopyrin-associated periodic syndrome (CAPS) and is characterized by recurrent fever (with malaise and chills), recurrent urticaria-like skin rash, sensorineural deafness, general signs of inflammation (eye redness, headaches, arthralgia/myalgia) and potentially life-threatening secondary amyloidosis (AA type).","definition_xrefs":["Orphanet:575"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete secondary glomerular disease (obsolete MONDO:0019724)","termid":"MONDO:0019724"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"cryopyrin-associated periodic syndrome","termid":"MONDO:0016168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005046"],"is_obsolete":false,"name":"Muckle-Wells syndrome","secondary_identifiers":["OMIM:191900","SCTID:402417009","NANDO:2201067","GARD:8472","NCIT:C119054","NANDO:1200467","UMLS:C0268390","icd11.foundation:1983358487","ICD9:708.8","MEDGEN:120634","DOID:0050854","NORD:1459","MedDRA:10064569"],"synonyms":[{"name":"Cryopyrin-associated periodic syndrome 2","type":"related"},{"name":"MUCKLE-Wells syndrome","type":"related"},{"name":"MWS","type":"related"},{"name":"Muckle Wells syndrome","type":"related"},{"name":"Muckle-Wells syndrome","type":"exact"},{"name":"Uda syndrome","type":"related"},{"name":"neutrophilic urticaria","type":"exact"},{"name":"urticaria, deafness and amyloidosis","type":"related"},{"name":"urticaria-deafness-amyloidosis syndrome","type":"related"}],"termid":"MONDO:0008633","xrefs":{"Monarch":{"xref_id":"0008633"}}}


id: MONDO:1011232
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Entropion that occurs in rabbit.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"entropion, non-human animal","termid":"MONDO:1010323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"entropion, rabbit","secondary_identifiers":["OMIA:000337-9986"],"termid":"MONDO:1011232","xrefs":{"Monarch":{"xref_id":"1011232"}}}


id: GO:0015842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The active transport of aminergic neurotransmitters into a synaptic vesicle. This import is fuelled by an electrochemical gradient across the vesicle membrane, established by the action proton pumps.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amine transport","termid":"GO:0015837"},{"relation_name":"is_a","term_name":"neurotransmitter loading into synaptic vesicle","termid":"GO:0098700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"aminergic neurotransmitter loading into synaptic vesicle","termid":"GO:0015842"}


id: MONDO:0012640
data:
  {"annotated_genes":["SJAG_02289"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86255],"is_not":false,"summary":null,"term":"MONDO:0012640"}]},"cv_name":"mondo","definition":"Charcot-Marie-Tooth disease, type 4J (CMT4J) belongs to the genetically heterogeneous group of CMT peripheral sensorimotor polyneuropathy diseases.","definition_xrefs":["Orphanet:139515"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 4","termid":"MONDO:0018995"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02289":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease type 4J","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0110184","MESH:C566984","OMIM:611228","SCTID:720638000","NCIT:C134954","UMLS:C1970011","GARD:12443","icd11.foundation:905681283","MEDGEN:370808"],"synonyms":[{"name":"CMT4J","type":"exact"},{"name":"Charcot-Marie-Tooth disease type 4 caused by mutation in FIG4","type":"exact"},{"name":"Charcot-Marie-Tooth disease, autosomal recessive, type 4J","type":"related"},{"name":"Charcot-Marie-Tooth disease, type 4J","type":"related"},{"name":"FIG4 Charcot-Marie-Tooth disease type 4","type":"exact"},{"name":"autosomal recessive Charcot-Marie-Tooth disease type 4J","type":"exact"}],"termid":"MONDO:0012640","terms_by_termid":{"MONDO:0012640":null},"xrefs":{"Monarch":{"xref_id":"0012640"}}}


id: PBO:0041171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTG anti-proliferation factor 4 pseudogene 1","termid":"PBO:0041171"}


id: PBO:0000602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Urb2 (predicted)","termid":"PBO:0000602"}


id: PBO:0055299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2726","termid":"PBO:0055299"}


id: PBO:0085623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in ER-to-Golgi transport; packaged into COPII vesicles for trafficking between ER and Golgi","termid":"PBO:0085623"}


id: PATO:0001135
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001135 ig d concentration (obsolete PATO:0001135)","termid":"PATO:0001135"}


id: PBO:0058316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4689","termid":"PBO:0058316"}


id: GO:0097189
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A vesicle containing parts of a dying cell. Apoptotic bodies can be formed during the execution phase of the apoptotic process, when the cell's cytoskeleton breaks up and causes the membrane to bulge outward. These bulges may separate from the cell, taking a portion of cytoplasm with them, to become apoptotic bodies. These are then engulfed by phagocytic cells, and their components recycled. Apoptotic bodies may range in size from 0.8 to 5um.","definition_xrefs":["PMID:24223256","PMID:15242875","Wikipedia:Apoptosis","Wikipedia:Bleb_(cell_biology)","GOC:mtg_apoptosis","GOC:vesicles"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular vesicle","termid":"GO:1903561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005576"],"is_obsolete":false,"name":"apoptotic body","synonyms":[{"name":"apoptotic bleb","type":"related"},{"name":"apoptotic vesicle","type":"exact"}],"termid":"GO:0097189"}


id: MONDO:0054725
data:
  {"annotated_genes":["SJAG_02500"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84874],"is_not":false,"summary":null,"term":"MONDO:0054725"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02500":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 21","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070163","MEDGEN:1617056","OMIM:617644","UMLS:C4539991"],"synonyms":[{"name":"SPGF21","type":"related"},{"name":"spermatogenic failure 21","type":"exact"}],"termid":"MONDO:0054725","terms_by_termid":{"MONDO:0054725":null},"xrefs":{"Monarch":{"xref_id":"0054725"}}}


id: GO:0048639
data:
  {"annotated_genes":["SJAG_00514","SJAG_03581","SJAG_02392"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89340,94063,95334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"}]},"cv_name":"biological_process","definition":"Any process that activates, maintains or increases the rate of developmental growth.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of growth","termid":"GO:0045927"},{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"positively_regulates","term_name":"developmental growth","termid":"GO:0048589"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_02392":null,"SJAG_03581":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of developmental growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of developmental growth","type":"narrow"},{"name":"stimulation of developmental growth","type":"narrow"},{"name":"up regulation of developmental growth","type":"exact"},{"name":"up-regulation of developmental growth","type":"exact"},{"name":"upregulation of developmental growth","type":"exact"}],"termid":"GO:0048639","terms_by_termid":{"GO:0051519":null}}


id: MONDO:0018783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"rheumatic disorder","termid":"MONDO:0005554"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblastic rheumatism","secondary_identifiers":["GARD:21958","ICD9:729.0","Orphanet:477650","MEDGEN:724307","SCTID:399964004","UMLS:C1302753","icd11.foundation:112300601"],"termid":"MONDO:0018783","xrefs":{"Monarch":{"xref_id":"0018783"}}}


id: PBO:0078521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 11","termid":"PBO:0078521"}


id: GO:0052647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pentitol phosphates, any phosphorylated alditol with a chain of five carbon atoms in the molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alditol phosphate metabolic process","termid":"GO:0052646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pentitol phosphate metabolic process","synonyms":[{"name":"pentitol phosphate metabolism","type":"exact"}],"termid":"GO:0052647"}


id: PBO:0075849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family member 1","termid":"PBO:0075849"}


id: PBO:0032756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein Aim19","termid":"PBO:0032756"}


id: MONDO:0014722
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"},{"relation_name":"is_a","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"RNU4ATAC spectrum disorder","termid":"MONDO:0100558"},{"relation_name":"is_a","term_name":"primordial dwarfism and slender bone disorder","termid":"MONDO:0800063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005497"],"is_obsolete":false,"name":"Roifman syndrome","secondary_identifiers":["GARD:9163","MESH:C535866","Orphanet:353298","OMIM:300258","MEDGEN:375801","OMIM:616651","UMLS:C1846059"],"synonyms":[{"name":"RFMN","type":"exact"},{"name":"Roifman syndrome","type":"exact"},{"name":"spondyloepiphseal dysplasia, retinal dystrophy and antibody deficiency","type":"related"},{"name":"spondyloepiphyseal dysplasia, retinal dystrophy, and antibody deficiency","type":"exact"},{"name":"spondyloepiphyseal dysplasia-retinal dystrophy-immunodeficiency syndrome","type":"exact"}],"termid":"MONDO:0014722","xrefs":{"Monarch":{"xref_id":"0014722"}}}


id: PR:Q9HDV6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mor2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HDV6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell polarity protein mor2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP19A11.04c","synonyms":[{"name":"Spom972h-mor2","type":"exact"},{"name":"morphological round protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HDV6"}


id: GO:0022019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of dorsal lateral ganglionic eminence cells, resulting in the expansion of the cell population.","definition_xrefs":["GOC:jid","GOC:dgh","GOC:cls","GO_REF:0000021","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subpallium cell proliferation in forebrain","termid":"GO:0022012"},{"relation_name":"part_of","term_name":"lateral ganglionic eminence cell proliferation","termid":"GO:0022018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal lateral ganglionic eminence cell proliferation","termid":"GO:0022019"}


id: PBO:0086772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; subunit of evolutionarily conserved EMC (Endoplasmic Reticulum Membrane Complex) implicated in ERAD (ER-associated degradation) and proper assembly of multi-pass transmembrane (TM) proteins; EMC acts in yeast as an ER-mitochondria tether that interacts with outer membrane protein Tom5p of TOM (Translocase of the Mitochondrial Outer Membrane) complex; YDR056C is not an essential protein","termid":"PBO:0086772"}


id: MONDO:0016003
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An disease or disorder caused by infection with Ehrlichia.","definition_xrefs":["MONDO:patterns/specific_infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"Anaplasmataceae infectious disease","termid":"MONDO:0006922"},{"relation_name":"is_a","term_name":"tick-borne infectious disease","termid":"MONDO:0025294"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ehrlichiosis","secondary_identifiers":["DOID:10242","SCTID:240626005","MESH:D016873","UMLS:C0085399","Orphanet:1902","GARD:2092","ICD9:082.40","icd11.foundation:1116297863","ICD9:082.4","MEDGEN:39039"],"synonyms":[{"name":"human ehrlichiosis","type":"exact"}],"termid":"MONDO:0016003","xrefs":{"Monarch":{"xref_id":"0016003"}}}


id: MOD:01096
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-benzyl-L-threonine.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"},{"relation_name":"is_a","term_name":"benzyl (Bzl) and benzyl ester (OBzl) modified residue","termid":"MOD:01008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-benzyl-L-threonine","termid":"MOD:01096"}


id: GO:1900598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of demethylkotanin.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"demethylkotanin metabolic process","termid":"GO:1900597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"demethylkotanin catabolic process","synonyms":[{"name":"demethylkotanin breakdown","type":"exact"},{"name":"demethylkotanin catabolism","type":"exact"},{"name":"demethylkotanin degradation","type":"exact"}],"termid":"GO:1900598"}


id: GO:0016462
data:
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id: GO:0048661
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of smooth muscle cell proliferation.","definition_xrefs":["GOC:ebc","CL:0000192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell proliferation","termid":"GO:0048660"},{"relation_name":"positively_regulates","term_name":"smooth muscle cell proliferation","termid":"GO:0048659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of smooth muscle cell proliferation","synonyms":[{"name":"activation of smooth muscle cell proliferation","type":"narrow"},{"name":"positive regulation of SMC proliferation","type":"exact"},{"name":"stimulation of smooth muscle cell proliferation","type":"narrow"},{"name":"up regulation of smooth muscle cell proliferation","type":"exact"},{"name":"up-regulation of smooth muscle cell proliferation","type":"exact"},{"name":"upregulation of smooth muscle cell proliferation","type":"exact"}],"termid":"GO:0048661"}


id: PBO:0065178
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein only RNase P catalytic subunit","termid":"PBO:0065178"}


id: MONDO:0004981
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  {"annotated_genes":["SJAG_02757","SJAG_00228"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86121],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014340"},{"annotations":[86501],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0015001"}]},"cv_name":"mondo","definition":"A disorder characterized by an electrocardiographic finding of a supraventricular arrhythmia characterized by the replacement of consistent P waves by rapid oscillations or fibrillatory waves that vary in size, shape and timing and are accompanied by an irregular ventricular response. (CDISC)","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac rhythm disease","termid":"MONDO:0007263"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00228":null,"SJAG_02757":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"atrial fibrillation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D001281","ICD9:427.31","DOID:0060224","EFO:0000275","NCIT:C50466","SCTID:49436004","NANDO:2200226","UMLS:C0004238","MEDGEN:445","icd11.foundation:171698302","HP:0005110","NANDO:2100051"],"synonyms":[{"name":"A-fib","type":"exact"},{"name":"AF","type":"exact"},{"name":"AFib","type":"exact"},{"name":"atrial fibrillation","type":"exact"},{"name":"atrial fibrillation (disease)","type":"exact"}],"termid":"MONDO:0004981","terms_by_termid":{"MONDO:0014340":null,"MONDO:0015001":null},"xrefs":{"Monarch":{"xref_id":"0004981"}}}


id: MONDO:0017542
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  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete central polydactyly of toes, bilateral (obsolete MONDO:0017542)","secondary_identifiers":["Orphanet:295185"],"synonyms":[{"name":"mesoaxial polydactyly of toes, bilateral","type":"exact"},{"name":"mirror foot, bilateral","type":"exact"}],"termid":"MONDO:0017542","xrefs":{"Monarch":{"xref_id":"0017542"}}}


id: GO:0097390
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-X-C motif) ligand 12 (CXCL12) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:rv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"chemokine (C-X-C motif) ligand 12 production","synonyms":[{"name":"CXCL12 production","type":"exact"}],"termid":"GO:0097390"}


id: PBO:0001957
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates rgf3","termid":"PBO:0001957"}


id: PBO:0053268
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte immunoglobulin like receptor A2","termid":"PBO:0053268"}


id: PBO:0053111
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LCMT1 antisense RNA 2","termid":"PBO:0053111"}


id: PBO:0085340
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoinositide binding protein; required for vesicle formation in the cytoplasm-to-vacuole targeting (CVT) pathway, autophagy, micronucleophagy and mitophagy; binds to several phosphoinositides including: PtdIns(3,5)P2, PI3P and PI4P; involved in PI3P-dependent recruitment and organization of both the Atg12-Atg5-Atg16 complex and Atg8p at the pre-autophagosomal structure; necessary for oxidant-induced cell death; WD-40 repeat containing PROPPIN family member","termid":"PBO:0085340"}


id: MOD:01309
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative - ","definition_xrefs":["Unimod:332#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiophosphate labeled with biotin-HPDP","termid":"MOD:00639"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiophosphate labeled with biotin-HPDP - site Y","synonyms":[{"name":"Thiophos-S-S-biotin","type":"related"},{"name":"thiophosphate labeled with biotin-HPDP","type":"related"}],"termid":"MOD:01309"}


id: MONDO:0011663
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Juvenile primary lateral sclerosis (JPLS) is a very rare motor neuron disease characterized by progressive upper motor neuron dysfunction leading to loss of the ability to walk with wheelchair dependence, and subsequently, loss of motor speech production.","definition_xrefs":["Orphanet:247604"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral sclerosis","termid":"MONDO:0018155"},{"relation_name":"is_a","term_name":"ALS2-related motor neuron disease","termid":"MONDO:0100227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"juvenile primary lateral sclerosis","secondary_identifiers":["SCTID:717964007","MESH:C536416","OMIM:606353","UMLS:C1853396","GARD:4485","MEDGEN:342870"],"synonyms":[{"name":"JPLS","type":"exact"},{"name":"PLS juvenile","type":"related"},{"name":"PLSJ","type":"related"},{"name":"Pls, juvenile","type":"related"},{"name":"juvenile PLS","type":"exact"},{"name":"primary lateral sclerosis, juvenile","type":"related"}],"termid":"MONDO:0011663","xrefs":{"Monarch":{"xref_id":"0011663"}}}


id: GO:0060234
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The negative regulation of cell adhesion process in which a neuroblast splits off of a neurectodermal sheet.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delamination","termid":"GO:0060232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"neuroblast delamination","termid":"GO:0060234"}


id: MONDO:0001706
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sarcoidosis of the cerebrum.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"},{"relation_name":"is_a","term_name":"neurosarcoidosis","termid":"MONDO:0045047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral sarcoidosis","secondary_identifiers":["UMLS:C0398676","DOID:13403","NCIT:C35441","MEDGEN:140767","SCTID:111936002"],"synonyms":[{"name":"cerebral sarcoidosis","type":"exact"},{"name":"sarcoidosis of telencephalon","type":"exact"},{"name":"telencephalon sarcoidosis","type":"exact"}],"termid":"MONDO:0001706","xrefs":{"Monarch":{"xref_id":"0001706"}}}


id: MONDO:0023250
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital sucrase-isomaltase deficiency","termid":"MONDO:0009114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066","MONDO:0004335"],"is_obsolete":false,"name":"global disaccharide intolerance","secondary_identifiers":["GARD:8386"],"termid":"MONDO:0023250","xrefs":{"Monarch":{"xref_id":"0023250"}}}


id: PBO:0067510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 650, pseudogene","termid":"PBO:0067510"}


id: MONDO:0003951
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangioma arising from the skin of the scrotum.","definition_xrefs":["NCIT:C6387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin hemangioma","termid":"MONDO:0003110"},{"relation_name":"is_a","term_name":"benign neoplasm of scrotum","termid":"MONDO:0021472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"scrotal hemangioma","secondary_identifiers":["DOID:663","MEDGEN:235583","UMLS:C1335936"],"synonyms":[{"name":"angioma of scrotum","type":"exact"},{"name":"angioma of the scrotum","type":"exact"},{"name":"hemangioma of scrotum","type":"exact"},{"name":"hemangioma of the scrotum","type":"exact"},{"name":"scrotal angioma","type":"exact"},{"name":"scrotal hemangioma","type":"exact"},{"name":"scrotum hemangioma","type":"exact"}],"termid":"MONDO:0003951","xrefs":{"Monarch":{"xref_id":"0003951"}}}


id: MONDO:0850010
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"congenital optic disk excavation","secondary_identifiers":["UMLS:C5681348","GARD:22112","MEDGEN:1842935","Orphanet:519333"],"termid":"MONDO:0850010","xrefs":{"Monarch":{"xref_id":"0850010"}}}


id: GO:0021511
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process that regulates the coordinated growth and establishes the non-random spatial arrangement of the spinal cord.","definition_xrefs":["GOC:jid","GOC:cls","GO_REF:0000021","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"part_of","term_name":"spinal cord development","termid":"GO:0021510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spinal cord patterning","termid":"GO:0021511"}


id: PBO:0071421
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 27","termid":"PBO:0071421"}


id: MONDO:0007878
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Increased collapsibility of the larynx.","definition_xrefs":["NCIT:C98971"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laryngeal disorder","termid":"MONDO:0004382"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital laryngomalacia","secondary_identifiers":["MESH:D055092","GARD:6865","OMIM:150280","Orphanet:2373","SCTID:253737007","DOID:0080833","ICD9:748.3","ICD10CM:Q31.5","MedDRA:10060786","MEDGEN:120500","icd11.foundation:64182721","UMLS:C0264303"],"synonyms":[{"name":"congenital laryngeal stridor","type":"related"},{"name":"laryngomalacia","type":"related"},{"name":"laryngomalacia congenital","type":"related"}],"termid":"MONDO:0007878","xrefs":{"Monarch":{"xref_id":"0007878"}}}


id: PBO:0061329
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family member B7","termid":"PBO:0061329"}


id: PBO:0078730
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Met (anticodon CAT) 4-2","termid":"PBO:0078730"}


id: PBO:0041529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 16 open reading frame 92","termid":"PBO:0041529"}


id: GO:0043208
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sphingolipid binding","termid":"GO:0046625"},{"relation_name":"is_a","term_name":"glycolipid binding","termid":"GO:0051861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008289"}],"interesting_parent_ids":["GO:0005488","GO:0008289","GO:0003674"],"is_obsolete":false,"name":"glycosphingolipid binding","termid":"GO:0043208"}


id: PBO:0063180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PBX homeobox 2","termid":"PBO:0063180"}


id: PBO:0051991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"JAKMIP2 antisense RNA 1","termid":"PBO:0051991"}


id: PBO:0063007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAFAH1B2 pseudogene 1","termid":"PBO:0063007"}


id: GO:0015473
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A porin that acts in the assembly of fimbria together with fimbrial chaperone.","definition_xrefs":["TC:1.B.11.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porin activity","termid":"GO:0015288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"fimbrial usher porin activity","termid":"GO:0015473"}


id: PBO:0083398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps ORF TPD3/YAL016W","termid":"PBO:0083398"}


id: PBO:0072781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO1 activating enzyme subunit 1","termid":"PBO:0072781"}


id: PBO:0088586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial cytosine-mismatch binding protein 1, candidate TFAM ortholog","termid":"PBO:0088586"}


id: GO:0035994
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a myofibril being extended beyond its slack length.","definition_xrefs":["PMID:14583192","GOC:BHF","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to mechanical stimulus","termid":"GO:0009612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to muscle stretch","termid":"GO:0035994"}


id: GO:0031902
data:
  {"annotated_genes":["SJAG_04513","SJAG_04023","SJAG_04024","SJAG_05210","SJAG_02100","SJAG_03347","SJAG_02429","SJAG_04349","SJAG_03892","SJAG_01981"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87595,91484,97151,99009,100576,109284,109295],"is_not":false,"summary":null,"term":"GO:0031902"},{"annotations":[91598,93399,118837],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032585"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding a late endosome.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome membrane","termid":"GO:0010008"},{"relation_name":"part_of","term_name":"late endosome","termid":"GO:0005770"}],"gene_count":10,"genes_by_uniquename":{"SJAG_01981":null,"SJAG_02100":null,"SJAG_02429":null,"SJAG_03347":null,"SJAG_03892":null,"SJAG_04023":null,"SJAG_04024":null,"SJAG_04349":null,"SJAG_04513":null,"SJAG_05210":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005768"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005768","GO:0005737"],"is_obsolete":false,"name":"late endosome membrane","references_by_uniquename":{"GO_REF:0000107":null,"PMID:32109380":null},"termid":"GO:0031902","terms_by_termid":{"GO:0031902":null,"GO:0032585":null}}


id: FYPO:0003661
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of double-strand break repair via nonhomologous end joining (NHEJ) is abnormal. NHEJ is the repair of double-strand breaks in DNA in which the two broken ends are rejoined with little or no sequence complementarity.","definition_xrefs":["GO:0006303","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal double-strand break repair during vegetative growth","termid":"FYPO:0000777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000298","FYPO:0000002","FYPO:0000293"],"is_obsolete":false,"name":"abnormal double-strand break repair via nonhomologous end joining","synonyms":[{"name":"abnormal NHEJ","type":"exact"},{"name":"abnormal double-strand break repair via nonhomologous end joining during mitotic cell cycle","type":"related"},{"name":"abnormal double-strand break repair via nonhomologous end joining during vegetative growth","type":"exact"},{"name":"abnormal nonhomologous end joining","type":"exact"}],"termid":"FYPO:0003661"}


id: PBO:0077953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 11-1","termid":"PBO:0077953"}


id: PBO:0036265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-coenzyme A thioesterase","termid":"PBO:0036265"}


id: MONDO:0006225
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mantle cell lymphoma that affects the stomach. It may arise as a solitary mass or it may be a component of multifocal lymphomatous polyposis of the gastrointestinal tract. It usually has an aggressive clinical course.","definition_xrefs":["NCIT:C27440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"mantle cell lymphoma","termid":"MONDO:0018876"},{"relation_name":"is_a","term_name":"gastric non-hodgkin lymphoma","termid":"MONDO:0042493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570","MONDO:0005046","MONDO:0004335"],"is_obsolete":false,"name":"gastric mantle cell lymphoma","secondary_identifiers":["UMLS:C1333780","EFO:1000272","MEDGEN:234300"],"synonyms":[{"name":"gastric mantle cell lymphoma","type":"exact"},{"name":"mantle cell lymphoma of stomach","type":"exact"},{"name":"mantle cell lymphoma of the stomach","type":"exact"},{"name":"stomach mantle cell lymphoma","type":"exact"}],"termid":"MONDO:0006225","xrefs":{"Monarch":{"xref_id":"0006225"}}}


id: GO:0008864
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 10-formyltetrahydrofolate + H2O = (6S)-5,6,7,8-tetrahydrofolate + formate + H+.","definition_xrefs":["RHEA:19833","EC:3.5.1.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"formyltetrahydrofolate deformylase activity","secondary_identifiers":["MetaCyc:FORMYLTHFDEFORMYL-RXN","KEGG_REACTION:R00944"],"synonyms":[{"name":"10-formyltetrahydrofolate amidohydrolase activity","type":"related"},{"name":"formyl-FH(4) hydrolase activity","type":"related"},{"name":"formyltetrahydrofolate hydrolase activity","type":"related"}],"termid":"GO:0008864"}


id: PBO:0080109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"utrophin","termid":"PBO:0080109"}


id: FYPO:0002780
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of reactive oxygen species (ROS) measured in a cell is lower than normal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"},{"relation_name":"is_a","term_name":"altered cellular reactive oxygen species level","termid":"FYPO:0002142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular reactive oxygen species level during vegetative growth","synonyms":[{"name":"decreased ROS accumulation during vegetative growth","type":"related"},{"name":"decreased cellular ROS accumulation during vegetative growth","type":"related"},{"name":"decreased cellular ROS level during vegetative growth","type":"exact"},{"name":"decreased cellular reactive oxygen species accumulation during vegetative growth","type":"related"},{"name":"decreased cellular reactive oxygen species level during mitotic cell cycle","type":"related"},{"name":"reduced cellular ROS level during vegetative growth","type":"exact"},{"name":"reduced cellular reactive oxygen species level during vegetative growth","type":"exact"}],"termid":"FYPO:0002780"}


id: GO:0099000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Entry of a symbiont's genome into the host cell through the host cell envelope via a contractile tail ejection system consisting of a baseplate, a central tube and an external contractile sheath. Upon binding to the host cell surface, the baseplate changes its conformation and triggers sheath contraction, driving the rigid internal tail tube through the cell envelope. Occurs in non-enveloped prokaryotic viruses.","definition_xrefs":["VZ:3950","PMID:26283379","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont genome ejection through host cell envelope","termid":"GO:0039678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont genome ejection through host cell envelope, contractile tail mechanism","synonyms":[{"name":"viral contractile tail ejection system","type":"exact"},{"name":"viral genome ejection through host cell envelope, contractile tail mechanism","type":"related"}],"termid":"GO:0099000"}


id: PBO:0046048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EIF3E pseudogene 1","termid":"PBO:0046048"}


id: GO:1900851
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of pseurotin A biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of amide metabolic process","termid":"GO:0034250"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of pseurotin A biosynthetic process","termid":"GO:1900849"},{"relation_name":"positively_regulates","term_name":"pseurotin A biosynthetic process","termid":"GO:1900790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of pseurotin A biosynthetic process","synonyms":[{"name":"up regulation of pseurotin A biosynthetic process","type":"exact"},{"name":"up-regulation of pseurotin A biosynthetic process","type":"exact"},{"name":"upregulation of pseurotin A biosynthetic process","type":"exact"}],"termid":"GO:1900851"}


id: MONDO:0021915
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare autosomal dominant inherited metabolic disorder characterized by deficiency of the enzyme tetrahydrofolate-methyltransferase. It results in the abnormal metabolism of methylcobalamin. Signs and symptoms include mental retardation, megaloblastic anemia, hypotonia, epilepsy, and hepatosplenomegaly.","definition_xrefs":["NCIT:C99081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"inborn disorder of amino acid metabolism","termid":"MONDO:0004736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"arakawa syndrome 2","secondary_identifiers":["MEDGEN:75697","NANDO:2201111","MESH:C537426","UMLS:C0268611","GARD:8265","SCTID:89579000"],"synonyms":[{"name":"Arakawa syndrome II","type":"exact"},{"name":"Arakawa's syndrome 2","type":"exact"},{"name":"Arakawa's syndrome II","type":"exact"},{"name":"N5-methylhomocysteine transferase deficiency","type":"related"},{"name":"homocystinuria-megaloblastic Anemia, cblG complementation type","type":"exact"},{"name":"methionine synthase deficiency","type":"exact"},{"name":"methylcobalamin deficiency, cblG type","type":"exact"},{"name":"tetrahydrofolate methyltransferase deficiency","type":"exact"},{"name":"tetrahydrofolate-methyltransferase deficiency syndrome","type":"related"}],"termid":"MONDO:0021915","xrefs":{"Monarch":{"xref_id":"0021915"}}}


id: GO:0048309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The partitioning of endoplasmic reticulum between daughter cells at cell division.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum organization","termid":"GO:0007029"},{"relation_name":"is_a","term_name":"organelle inheritance","termid":"GO:0048308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum inheritance","synonyms":[{"name":"ER inheritance","type":"exact"}],"termid":"GO:0048309"}


id: FYPO:0000178
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of cytokinesis is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal regulation of cytokinesis","synonyms":[{"name":"abnormal regulation of cytokinesis during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of cytokinesis during vegetative growth","type":"exact"},{"name":"abnormal regulation of mitotic cytokinesis","type":"exact"}],"termid":"FYPO:0000178"}


id: SO:1001266
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1001266 stop_codon_redefinition_as_selenocysteine (obsolete SO:1001266)","termid":"SO:1001266"}


id: MONDO:0025417
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A poxvirus infection of poultry and other birds characterized by the formation of wart-like nodules on the skin and diphtheritic necrotic masses (cankers) in the upper digestive and respiratory tracts.","definition_xrefs":["MESH:D005586"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fowlpox","synonyms":[{"name":"Bird pox","type":"related"},{"name":"Birdpox","type":"related"},{"name":"Diphtherias, fowl","type":"related"},{"name":"Variola avium","type":"related"},{"name":"diphtheria, fowl","type":"related"},{"name":"epithelioma contagiosum","type":"related"},{"name":"fowl Diphtherias","type":"related"},{"name":"fowl diphtheria","type":"related"},{"name":"fowl pox","type":"related"},{"name":"pox, Bird","type":"related"},{"name":"pox, fowl","type":"related"}],"termid":"MONDO:0025417","xrefs":{"Monarch":{"xref_id":"0025417"}}}


id: MONDO:0011252
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A spondyloepimetaphyseal dysplasia characterized by severely disproportionate short stature, short limbs, small chest, short neck, thin lips, severe lumbar lordosis, marked genu varum, joint laxity, distended abdomen, mild hepatomegaly and splenomegaly.","definition_xrefs":["Orphanet:93352"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"spondyloepimetaphyseal dysplasia","termid":"MONDO:0100510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondyloepimetaphyseal dysplasia, Shohat type","secondary_identifiers":["MESH:C566523","SCTID:719201004","icd11.foundation:1389783101","MEDGEN:400703","OMIM:602557","UMLS:C1865185","GARD:4980"],"synonyms":[{"name":"SEMD Shohat type","type":"related"},{"name":"SEMD, Shohat type","type":"exact"},{"name":"SEMDSH","type":"related"},{"name":"spondyloepimetaphyseal dysplasia Shohat type","type":"related"},{"name":"spondyloepimetaphyseal dysplasia, Shohat type","type":"exact"}],"termid":"MONDO:0011252","xrefs":{"Monarch":{"xref_id":"0011252"}}}


id: FYPO:0000934
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the microtubule cytoskeleton does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000931"},{"relation_name":"is_a","term_name":"abolished protein localization during vegetative growth","termid":"FYPO:0001179"},{"relation_name":"is_a","term_name":"abolished protein localization to microtubule cytoskeleton","termid":"FYPO:0004091"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to microtubule cytoskeleton during vegetative growth","synonyms":[{"name":"abolished protein localisation to microtubule cytoskeleton during vegetative growth","type":"exact"},{"name":"abolished protein localization to microtubule cytoskeleton during mitotic cell cycle","type":"related"},{"name":"protein absent from microtubule cytoskeleton during vegetative growth","type":"related"},{"name":"protein localization to microtubule cytoskeleton abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0000934"}


id: PBO:0065609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTP4A1 pseudogene 3","termid":"PBO:0065609"}


id: MONDO:0006451
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Thymic carcinoma (TC) is a type of thymic epithelial neoplasm characterized by a high malignant potential.","definition_xrefs":["Orphanet:99868"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"thymoma","termid":"MONDO:0006456"},{"relation_name":"is_a","term_name":"thymus cancer","termid":"MONDO:0002586"},{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"},{"relation_name":"is_a","term_name":"thymic epithelial neoplasm","termid":"MONDO:0018079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"thymic carcinoma","secondary_identifiers":["ONCOTREE:THYC","UMLS:C0205969","ICDO:8586/3","DOID:4554","MEDGEN:60049","NANDO:2200079","MedDRA:10061031","DOID:3284","GARD:19695","NCIT:C7569","EFO:1000576","icd11.foundation:1351671383","SCTID:444374006"],"synonyms":[{"name":"THYC","type":"related"},{"name":"carcinoma of thymus","type":"exact"},{"name":"malignant thymoma","type":"exact"},{"name":"thymic carcinoma","type":"exact"},{"name":"thymic carcinoma (excluding well differentiated thymic carcinoma)","type":"exact"},{"name":"thymic carcinoma excluding well differentiated thymic carcinoma","type":"exact"},{"name":"thymoma type C","type":"exact"},{"name":"thymoma, malignant","type":"exact"},{"name":"thymoma, malignant (morphologic abnormality)","type":"exact"},{"name":"thymoma, type C","type":"exact"},{"name":"thymoma, type C (morphologic abnormality)","type":"exact"},{"name":"thymus carcinoma","type":"exact"},{"name":"type C thymoma","type":"exact"}],"termid":"MONDO:0006451","xrefs":{"Monarch":{"xref_id":"0006451"}}}


id: GO:0033128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of one or more phosphate groups to a histone protein.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone phosphorylation (obsolete GO:0033128)","termid":"GO:0033128"}


id: PBO:0056674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesenteric estrogen dependent adipogenesis","termid":"PBO:0056674"}


id: MONDO:0002629
data:
  {"annotated_genes":["SJAG_04287"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85653],"is_not":false,"summary":null,"term":"MONDO:0002629"}]},"cv_name":"mondo","definition":"A usually aggressive malignant bone-forming mesenchymal neoplasm arising from the bone. It may arise de novo or from a pre-existing lesion of the bone. Pain and a palpable mass are the most frequent clinical sign and symptom. It may spread to other anatomic sites, particularly the lungs.","definition_xrefs":["NCIT:C53707"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteosarcoma","termid":"MONDO:0009807"},{"relation_name":"is_a","term_name":"bone sarcoma","termid":"MONDO:0021054"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"bone osteosarcoma","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:259500","DOID:3376","Orphanet:668","SCTID:307576001","MEDGEN:108437","UMLS:C0585442","ICD9:170.9","MedDRA:10031291","GARD:7284"],"synonyms":[{"name":"bone osteosarcoma","type":"exact"},{"name":"osteosarcoma of bone","type":"exact"},{"name":"osteosarcoma, somatic","type":"exact"},{"name":"osteosarcoma, somatic mutation","type":"exact"},{"name":"primary osteosarcoma of bone","type":"exact"}],"termid":"MONDO:0002629","terms_by_termid":{"MONDO:0002629":null},"xrefs":{"Monarch":{"xref_id":"0002629"}}}


id: SO:0000101
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transposon or insertion sequence. An element that can insert in a variety of DNA sequences.","direct_ancestors":[{"relation_name":"is_a","term_name":"integrated_mobile_genetic_element","termid":"SO:0001039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transposable_element","secondary_identifiers":["http://en.wikipedia.org/wiki/Transposable_element"],"synonyms":[{"name":"transposable element","type":"exact"},{"name":"transposon","type":"exact"}],"termid":"SO:0000101"}


id: MONDO:0002076
data:
  {"annotated_genes":["SJAG_02231"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84502],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008259"}]},"cv_name":"mondo","definition":"Abnormal presence of air in the pleural cavity.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pleural disorder","termid":"MONDO:0002037"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02231":null},"genotype_count":0,"is_obsolete":false,"name":"pneumothorax","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:1673","SCTID:36118008","ICD9:512.8","icd11.foundation:1946559257","HP:0002107","MEDGEN:19365","MESH:D011030","NCIT:C38006","UMLS:C0032326"],"synonyms":[{"name":"pneumothorax","type":"exact"},{"name":"pneumothorax (disease)","type":"exact"}],"termid":"MONDO:0002076","terms_by_termid":{"MONDO:0008259":null},"xrefs":{"Monarch":{"xref_id":"0002076"}}}


id: PBO:0053511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 499","termid":"PBO:0053511"}


id: MONDO:0006813
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A nevus characterized by the proliferation of nevus cells in the dermis without involvement of the dermal-epidermal junction.","definition_xrefs":["NCIT:C3804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melanocytic nevus","termid":"MONDO:0005073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"intradermal nevus","secondary_identifiers":["MESH:D018330","SCTID:302838006","MedDRA:10058537","UMLS:C0206737","EFO:1000995","ICDO:8750/0","MEDGEN:61670"],"synonyms":[{"name":"dermal Nevus","type":"exact"}],"termid":"MONDO:0006813","xrefs":{"Monarch":{"xref_id":"0006813"}}}


id: SO:1000016
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transition of a guanine to an adenine.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine_transition","termid":"SO:1000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G_to_A_transition","synonyms":[{"name":"G to A transition","type":"exact"}],"termid":"SO:1000016"}


id: GO:0090356
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of hormone metabolic process","termid":"GO:0032351"},{"relation_name":"is_a","term_name":"regulation of auxin metabolic process","termid":"GO:0090354"},{"relation_name":"negatively_regulates","term_name":"auxin metabolic process","termid":"GO:0009850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of auxin metabolic process","synonyms":[{"name":"negative regulation of auxin metabolism","type":"exact"}],"termid":"GO:0090356"}


id: GO:0035558
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a signal is passed from the insulin receptor to components of the phosphatidylinositol 3-kinase (PI3K) cascade, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.","definition_xrefs":["GOC:signaling","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling (obsolete GO:0035558)","synonyms":[{"name":"PI3K cascade involved in signaling from the insulin receptor","type":"exact"},{"name":"phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling","type":"exact"},{"name":"phosphatidylinositol 3-kinase cascade involved in insulin receptor signalling","type":"exact"},{"name":"phosphoinositide 3-kinase cascade involved in insulin receptor signaling","type":"exact"},{"name":"phosphoinositide 3-kinase cascade involved in insulin receptor signalling","type":"exact"}],"termid":"GO:0035558"}


id: PBO:0069343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 603, pseudogene","termid":"PBO:0069343"}


id: MONDO:0000329
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete epidemic typhus (obsolete MONDO:0000329)","termid":"MONDO:0000329","xrefs":{"Monarch":{"xref_id":"0000329"}}}


id: PBO:0066309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBPJ pseudogene 3","termid":"PBO:0066309"}


id: GO:0106237
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: arachidonate + O2 = (5Z,8Z,10E,12R,14Z)-12-hydroperoxyicosa-5,8,10,14-tetraenoate.","definition_xrefs":["PMID:10100631","PMID:11256953","RHEA:41336","GOC:gap"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"arachidonate 12(R)-lipoxygenase activity","termid":"GO:0106237"}


id: PR:P78759
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- par2 gene.","definition_xrefs":["UniProtKB:P78759","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta 2 isoform (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F12.12","synonyms":[{"name":"PP2A, B subunit, B' delta 2 isoform (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-par2","type":"exact"}],"termid":"PR:P78759"}


id: PR:Q9C103
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- eme1 gene.","definition_xrefs":["UniProtKB:Q9C103","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crossover junction endonuclease eme1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1E7.06c","synonyms":[{"name":"Spom972h-eme1","type":"exact"},{"name":"essential meiotic endonuclease 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9C103"}


id: SO:0000820
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome originating in a chloroplast.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"chloroplast_sequence","termid":"SO:0000745"},{"relation_name":"is_a","term_name":"chromosome","termid":"SO:0000340"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chloroplast_chromosome","synonyms":[{"name":"chloroplast chromosome","type":"exact"}],"termid":"SO:0000820"}


id: MONDO:0020672
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by occlusion of blood vessels. It differs from thrombosis in that it can be used to describe any form of blockage, not just one formed by a clot.","definition_xrefs":["Wikipedia:Vascular_occlusion"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vascular occlusion disorder","synonyms":[{"name":"vascular occlusion","type":"exact"}],"termid":"MONDO:0020672","xrefs":{"Monarch":{"xref_id":"0020672"}}}


id: MONDO:0005052
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Irritable bowel syndrome (IBS) is a chronic functional condition of the lower gastrointestinal (GI) tract characterized by abdominal pain or discomfort and disordered bowel habit (diarrhea, constipation, or fluctuation between the two).","definition_xrefs":["PMID:28657875","PMID:2174034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"irritable bowel syndrome","secondary_identifiers":["MEDGEN:5897","NCIT:C82343","ICD9:564.1","DOID:9778","MESH:D043183","SCTID:10743008","UMLS:C0022104","EFO:0000555","icd11.foundation:1158238623","ICD10CM:K58"],"synonyms":[{"name":"IBD","type":"exact"},{"name":"IBS","type":"exact"},{"name":"irritable bowel syndrome","type":"exact"},{"name":"irritable colon","type":"exact"},{"name":"mucus colitis","type":"exact"},{"name":"psychogenic IBS","type":"related"},{"name":"spastic colon","type":"exact"}],"termid":"MONDO:0005052","xrefs":{"Monarch":{"xref_id":"0005052"}}}


id: PBO:0116325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermidine family transmembrane transporter Shp2","termid":"PBO:0116325"}


id: FYPO:0006391
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the cell does not contain a detectable meiotic spindle during one or both meiotic nuclear divisions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic spindle","termid":"FYPO:0000734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0005447","FYPO:0002399","FYPO:0001985","FYPO:0000120","FYPO:0000002"],"is_obsolete":false,"name":"meiotic spindle absent from cell during meiosis","synonyms":[{"name":"absent meiotic spindle during meiosis","type":"exact"},{"name":"meiotic spindle absent from cell during meiotic nuclear division","type":"exact"},{"name":"spindle absent from cell during meiosis","type":"exact"}],"termid":"FYPO:0006391"}


id: GO:1905018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of methionine-tRNA ligase activity.","definition_xrefs":["GOC:TermGenie","PMID:1665486","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of methionine-tRNA ligase activity (obsolete GO:1905018)","synonyms":[{"name":"regulation of L-methionine:tRNAMet ligase (AMP-forming)","type":"exact"},{"name":"regulation of MetRS activity","type":"exact"},{"name":"regulation of methionine translase activity","type":"exact"},{"name":"regulation of methionyl-tRNA synthetase activity","type":"exact"},{"name":"regulation of methionyl-transfer RNA synthetase activity","type":"exact"},{"name":"regulation of methionyl-transfer ribonucleate synthetase activity","type":"exact"},{"name":"regulation of methionyl-transfer ribonucleic acid synthetase activity","type":"exact"}],"termid":"GO:1905018"}


id: PBO:0065910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB GTPase activating protein 1 like","termid":"PBO:0065910"}


id: PBO:0030726
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-filamentous_actin_absent","termid":"PBO:0030726"}


id: PBO:0043530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cordon-bleu WH2 repeat protein like 1","termid":"PBO:0043530"}


id: GO:0052444
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of symbiont salicylic acid-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway (obsolete GO:0052444)","synonyms":[{"name":"modulation by organism of defense-related symbiont salicylic acid-mediated signal transduction pathway","type":"exact"},{"name":"modulation of defense-related symbiont SA-mediated signal transduction pathway by organism","type":"exact"}],"termid":"GO:0052444"}


id: PBO:0084550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the seripauperin multigene family; active during alcoholic fermentation, regulated by anaerobiosis, inhibited by oxygen, repressed by heme","termid":"PBO:0084550"}


id: PBO:0051539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 6","termid":"PBO:0051539"}


id: SO:0001845
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter element with consensus sequence CGWGGWNGMM, bound by transcription factors related to RecA and found in promoters of genes expressed following several types of DNA damage or inhibition of DNA synthesis.","definition_xrefs":["PMID:11073995","PMID:8668127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DRE","synonyms":[{"name":"DNA damage response element","type":"exact"}],"termid":"SO:0001845"}


id: MONDO:0013581
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant non-syndromic intellectual disability in which the cause of the disease is a mutation in the DOCK8 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intellectual disability, autosomal dominant","termid":"MONDO:0100172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual disability, autosomal dominant 2","secondary_identifiers":["DOID:0070032","MEDGEN:481472","OMIM:614113","GARD:16458","UMLS:C3279842"],"synonyms":[{"name":"DOCK8 autosomal dominant non-syndromic intellectual disability","type":"exact"},{"name":"MRD2","type":"exact"},{"name":"autosomal dominant intellectual disability 2","type":"exact"},{"name":"autosomal dominant mental retardation 2","type":"exact"},{"name":"autosomal dominant non-syndromic intellectual disability 2","type":"related"},{"name":"autosomal dominant non-syndromic intellectual disability caused by mutation in DOCK8","type":"exact"},{"name":"intellectual disability, autosomal dominant 2","type":"exact"},{"name":"intellectual disability, autosomal dominant type 2","type":"exact"},{"name":"mental retardation, autosomal dominant 2","type":"related"},{"name":"mental retardation, autosomal dominant type 2","type":"exact"}],"termid":"MONDO:0013581","xrefs":{"Monarch":{"xref_id":"0013581"}}}


id: PBO:0040914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMS1 pseudogene 18","termid":"PBO:0040914"}


id: GO:0052671
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranylgeraniol + nucleoside triphosphate = all-trans-geranyl-geranyl monophosphate + nucleoside diphosphate.","definition_xrefs":["GOC:kd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenol kinase activity","termid":"GO:0052673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"geranylgeraniol kinase activity","synonyms":[{"name":"geranylgeraniol phosphotransferase activity","type":"exact"}],"termid":"GO:0052671"}


id: GO:0060703
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of deoxyribonuclease.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease inhibitor activity","termid":"GO:0140721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0004857"}],"interesting_parent_ids":["GO:0140678","GO:0003674","GO:0030234","GO:0098772","GO:0004857"],"is_obsolete":false,"name":"deoxyribonuclease inhibitor activity","synonyms":[{"name":"DNase inhibitor activity","type":"related"}],"termid":"GO:0060703"}


id: PATO:0000128
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer that has mass near a gravitational body.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Weight"],"direct_ancestors":[{"relation_name":"is_a","term_name":"force","termid":"PATO:0001035"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"weight","termid":"PATO:0000128"}


id: PBO:0041543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 17 open reading frame 107","termid":"PBO:0041543"}


id: MONDO:0000065
data:
  {"annotated_genes":["SJAG_03303"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86820],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012970"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03303":null},"genotype_count":0,"is_obsolete":false,"name":"microvascular complications of diabetes, susceptibility","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIMPS:603933"],"synonyms":[{"name":"microvascular complications of diabetes","type":"exact"}],"termid":"MONDO:0000065","terms_by_termid":{"MONDO:0012970":null},"xrefs":{"Monarch":{"xref_id":"0000065"}}}


id: PBO:0013767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inorganic pyrophosphatase ipp1 (predicted)","termid":"PBO:0013767"}


id: GO:0007367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Division of the 14 parasegments of the embryo into anterior and posterior compartments; exemplified by the actions of the segment polarity gene products.","definition_xrefs":["ISBN:0879694238","ISBN:0632030488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"periodic partitioning","termid":"GO:0007365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"segment polarity determination","termid":"GO:0007367"}


id: GO:0035782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a mature natural killer cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). A mature natural killer cell is a natural killer cell that is developmentally mature and expresses a variety of inhibitory and activating receptors that recognize MHC class and other stress related molecules.","definition_xrefs":["GOC:BHF","CL:0000824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"natural killer cell chemotaxis","termid":"GO:0035747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mature natural killer cell chemotaxis","synonyms":[{"name":"activated natural killer cell chemotaxis","type":"exact"}],"termid":"GO:0035782"}


id: PBO:0038967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADNP homeobox 2","termid":"PBO:0038967"}


id: PBO:0086003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; similar to Reg1p; expression regulated by glucose and Rgt1p; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; YKR075C has a paralog, YOR062C, that arose from the whole genome duplication","termid":"PBO:0086003"}


id: PBO:0090038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Sfp1","termid":"PBO:0090038"}


id: FYPO:0008261
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of annosylinositol phosphorylceramide measured in a cell is lower than normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PMID:20388730"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular mannosylinositol phosphorylceramide level","termid":"FYPO:0008261"}


id: PBO:0050002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIF1A stabilizing long noncoding RNA","termid":"PBO:0050002"}


id: PBO:0001515
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ipc Mannosyl-Transferase homologue","termid":"PBO:0001515"}


id: GO:0033992
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,5-anhydro-D-fructose = 1,5-anhydro-4-deoxy-D-glycero-hex-3-en-2-ulose + H2O.","definition_xrefs":["EC:4.2.1.111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"1,5-anhydro-D-fructose dehydratase activity","secondary_identifiers":["MetaCyc:4.2.1.111-RXN","RHEA:15725"],"synonyms":[{"name":"1,5-anhydro-D-arabino-hex-2-ulose dehydratase activity","type":"related"},{"name":"1,5-anhydro-D-fructose 4-dehydratase activity","type":"related"},{"name":"1,5-anhydro-D-fructose hydro-lyase (ascopyrone-M-forming) activity","type":"related"},{"name":"1,5-anhydro-D-fructose hydro-lyase activity","type":"related"},{"name":"1,5-anhydro-D-fructose hydrolyase activity","type":"related"},{"name":"AF dehydratase activity","type":"related"},{"name":"AFDH","type":"related"}],"termid":"GO:0033992"}


id: GO:1990579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The phosphorylation of a peptidyl-serine to form peptidyl-O-phospho-L-serine on an identical protein. For example, phosphorylation by the other kinase within a homodimer.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:21317875"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-serine autophosphorylation","termid":"GO:0036289"},{"relation_name":"is_a","term_name":"protein trans-autophosphorylation","termid":"GO:0036290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-serine trans-autophosphorylation","synonyms":[{"name":"serine autophosphorylation in trans","type":"exact"},{"name":"serine transautophosphorylation","type":"exact"}],"termid":"GO:1990579"}


id: PBO:0028449
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_meiotic_recombination_at_silent_mating-type_cassette","termid":"PBO:0028449"}


id: GO:0005604
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen-containing extracellular matrix consisting of a thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.","definition_xrefs":["ISBN:0198547684","PMID:22505934"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagen-containing extracellular matrix","termid":"GO:0062023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"basement membrane","secondary_identifiers":["GO:0005605","Wikipedia:Basement_membrane","GO:0008003"],"synonyms":[{"name":"basal lamina","type":"related"},{"name":"basement lamina","type":"related"},{"name":"lamina densa","type":"related"}],"termid":"GO:0005604"}


id: PBO:0065020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 2 pseudogene 4","termid":"PBO:0065020"}


id: PBO:0050851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)","termid":"PBO:0050851"}


id: PBO:0059248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L17","termid":"PBO:0059248"}


id: PBO:0002909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome segregation protein Pcs1","termid":"PBO:0002909"}


id: GO:0035855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a megakaryocyte cell over time, from its formation to the mature structure. Megakaryocyte development does not include the steps involved in committing a cell to a megakaryocyte fate. A megakaryocyte is a giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow.","definition_xrefs":["CL:0000556","GOC:vk","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid cell development","termid":"GO:0061515"},{"relation_name":"part_of","term_name":"megakaryocyte differentiation","termid":"GO:0030219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"megakaryocyte development","synonyms":[{"name":"megakaryocyte cell development","type":"exact"}],"termid":"GO:0035855"}


id: MONDO:0008355
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited hypertrophic pyloric stenosis","termid":"MONDO:0100239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"pyloric stenosis, infantile hypertrophic, 1","secondary_identifiers":["UMLS:C1867403","OMIM:179010","MEDGEN:357978"],"synonyms":[{"name":"IHPS1","type":"exact"},{"name":"pyloric stenosis, infantile","type":"related"},{"name":"pyloric stenosis, infantile hypertrophic","type":"related"},{"name":"pyloric stenosis, infantile hypertrophic 1, multifactorial","type":"exact"},{"name":"pyloric stenosis, infantile hypertrophic, 1","type":"exact"}],"termid":"MONDO:0008355","xrefs":{"Monarch":{"xref_id":"0008355"}}}


id: MONDO:0012391
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Progressive epilepsy-intellectual deficit, Finnish type (also known as Northern epilepsy) is a subtype of neuronal ceroid lipofuscinosis (NCL) characterized by seizures, progressive decline of intellectual capacities and variable loss of vision.","definition_xrefs":["Orphanet:1947"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"progressive myoclonus epilepsy","termid":"MONDO:0020074"},{"relation_name":"is_a","term_name":"neuronal ceroid lipofuscinosis 8","termid":"MONDO:0010830"},{"relation_name":"is_a","term_name":"monogenic epilepsy","termid":"MONDO:0015653"},{"relation_name":"is_a","term_name":"syndromic dyslipidemia","termid":"MONDO:0015905"},{"relation_name":"is_a","term_name":"progressive myoclonus epilepsy","termid":"MONDO:0020074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0002525","MONDO:0002561","MONDO:0005559","MONDO:0005027","MONDO:0005066"],"is_obsolete":false,"name":"neuronal ceroid lipofuscinosis 8 northern epilepsy variant","secondary_identifiers":["DOID:0110724","ICD10CM:G40.3","GARD:4010","OMIM:610003","Orphanet:530298","UMLS:C1864923","MEDGEN:355328"],"synonyms":[{"name":"CLN8","type":"related"},{"name":"CLN8 disease, EPMR (subtype)","type":"related"},{"name":"CLN8 disease, Northern epilepsy variant","type":"exact"},{"name":"CLN8 disease, late infantile (subtype)","type":"related"},{"name":"EPMR","type":"exact"},{"name":"NCL, Northern epilepsy variant","type":"exact"},{"name":"Northern epilepsy","type":"exact"},{"name":"ceroid lipofuscinosis neuronal 8","type":"related"},{"name":"ceroid lipofuscinosis, neuronal, 8, NORTHERN epilepsy variant","type":"related"},{"name":"early onset familial encephalopathy with neuroserpin inclusion bodies","type":"exact"},{"name":"epilepsy mental deterioration Finnish type","type":"related"},{"name":"epilepsy, progressive, with intellectual disability","type":"related"},{"name":"epilepsy, progressive, with mental retardation","type":"related"},{"name":"neuronal ceroid lipofuscinosis 8","type":"related"},{"name":"neuronal ceroid lipofuscinosis, Northern epilepsy variant","type":"exact"},{"name":"northern epilepsy variant, neuronal ceroid lipofuscinosis, Northern epilepsy variant","type":"exact"},{"name":"progressive epilepsy - intellectual disability, Finnish type","type":"related"},{"name":"progressive epilepsy with intellectual disability, northern epilepsy","type":"exact"},{"name":"progressive epilepsy with mental retardation, northern epilepsy","type":"exact"},{"name":"progressive epilepsy-intellectual disability syndrome, Finnish type","type":"exact"},{"name":"progressive myoclonic epilepsy with neuroserpin inclusion bodies","type":"exact"}],"termid":"MONDO:0012391","xrefs":{"Monarch":{"xref_id":"0012391"}}}


id: GO:0044144
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism.","definition_xrefs":["GOC:jl","GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of growth of symbiont involved in interaction with host (obsolete GO:0044144)","synonyms":[{"name":"modulation of growth of symbiont during interaction with host","type":"related"}],"termid":"GO:0044144"}


id: GO:0003102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process mediated by angiotensin that increases the rate of diuresis.","definition_xrefs":["GOC:mtg_cardio","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of diuresis by angiotensin (obsolete GO:0003102)","synonyms":[{"name":"angiotensin-mediated positive regulation of diuresis","type":"exact"},{"name":"positive regulation of diuresis by angiotensin","type":"exact"}],"termid":"GO:0003102"}


id: PBO:0079609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 H","termid":"PBO:0079609"}


id: GO:0090541
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a MIT protein domain. The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.","definition_xrefs":["InterPro:IPR007330","GOC:pm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"MIT domain binding","termid":"GO:0090541"}


id: GO:0030003
data:
  {"annotated_genes":["SJAG_01803","SJAG_01541","SJAG_04032","SJAG_00668","SJAG_02532","SJAG_03866","SJAG_00792","SJAG_03862","SJAG_01694","SJAG_02399","SJAG_02578","SJAG_01007","SJAG_03962","SJAG_04028","SJAG_04760","SJAG_00516","SJAG_00212","SJAG_04955","SJAG_01913","SJAG_00222","SJAG_04616","SJAG_04892","SJAG_02735","SJAG_02474","SJAG_04867","SJAG_04031","SJAG_01353","SJAG_03528","SJAG_04096","SJAG_01990","SJAG_02457","SJAG_04677","SJAG_01078","SJAG_04185","SJAG_01817","SJAG_00532","SJAG_02834","SJAG_01004","SJAG_02019","SJAG_02023","SJAG_05294","SJAG_00136","SJAG_01400","SJAG_02883","SJAG_01397","SJAG_03850","SJAG_04743","SJAG_02080","SJAG_04757","SJAG_04607","SJAG_03667","SJAG_04167","SJAG_04403","SJAG_04584","SJAG_04675","SJAG_00822","SJAG_02716","SJAG_03879","SJAG_04258","SJAG_00301","SJAG_00328","SJAG_03793","SJAG_04698","SJAG_03516","SJAG_00802","SJAG_02847","SJAG_01129","SJAG_01669","SJAG_03631","SJAG_01435","SJAG_00923","SJAG_02470"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99981,103287,93588,93596,91936],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010106"},{"annotations":[90181,90682],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032468"},{"annotations":[114581,97828,100514,97604,94940,111834,95169,108153,113417,115060,118070,101128,96294,112853],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006874"},{"annotations":[92615,95769,99652,74486,107341],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006878"},{"annotations":[74487,92441,93542,106903,91790,99982,103760,113370,88749,95770],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006879"},{"annotations":[89697,107073],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010961"},{"annotations":[103295,94811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030026"},{"annotations":[94922,88989,96226,96484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030007"},{"annotations":[103815,89931,94209,100725,93252,113833,95676,93251,99653,102272,103074,103676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006882"},{"annotations":[112287,91933,103289,91937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033215"},{"annotations":[100007],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030641"},{"annotations":[87172,98325,113266,87173],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051453"},{"annotations":[110272,61720,110273,68698,61611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033214"},{"annotations":[95319,98417,89322,87512,95139,99511,101136,101483,103411,89639,88794,118225],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007035"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of monoatomic cations within a cell. Monatomic cations (also called simple cations) are cations consisting of exactly one atom.","definition_xrefs":["GOC:ceb","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular monoatomic ion homeostasis","termid":"GO:0006873"},{"relation_name":"is_a","term_name":"monoatomic cation homeostasis","termid":"GO:0055080"}],"gene_count":72,"genes_by_uniquename":{"SJAG_00136":null,"SJAG_00212":null,"SJAG_00222":null,"SJAG_00301":null,"SJAG_00328":null,"SJAG_00516":null,"SJAG_00532":null,"SJAG_00668":null,"SJAG_00792":null,"SJAG_00802":null,"SJAG_00822":null,"SJAG_00923":null,"SJAG_01004":null,"SJAG_01007":null,"SJAG_01078":null,"SJAG_01129":null,"SJAG_01353":null,"SJAG_01397":null,"SJAG_01400":null,"SJAG_01435":null,"SJAG_01541":null,"SJAG_01669":null,"SJAG_01694":null,"SJAG_01803":null,"SJAG_01817":null,"SJAG_01913":null,"SJAG_01990":null,"SJAG_02019":null,"SJAG_02023":null,"SJAG_02080":null,"SJAG_02399":null,"SJAG_02457":null,"SJAG_02470":null,"SJAG_02474":null,"SJAG_02532":null,"SJAG_02578":null,"SJAG_02716":null,"SJAG_02735":null,"SJAG_02834":null,"SJAG_02847":null,"SJAG_02883":null,"SJAG_03516":null,"SJAG_03528":null,"SJAG_03631":null,"SJAG_03667":null,"SJAG_03793":null,"SJAG_03850":null,"SJAG_03862":null,"SJAG_03866":null,"SJAG_03879":null,"SJAG_03962":null,"SJAG_04028":null,"SJAG_04031":null,"SJAG_04032":null,"SJAG_04096":null,"SJAG_04167":null,"SJAG_04185":null,"SJAG_04258":null,"SJAG_04403":null,"SJAG_04584":null,"SJAG_04607":null,"SJAG_04616":null,"SJAG_04675":null,"SJAG_04677":null,"SJAG_04698":null,"SJAG_04743":null,"SJAG_04757":null,"SJAG_04760":null,"SJAG_04867":null,"SJAG_04892":null,"SJAG_04955":null,"SJAG_05294":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular monoatomic cation homeostasis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"cellular cation homeostasis","type":"broad"},{"name":"cellular monoatomic cation homeostasis","type":"exact"}],"termid":"GO:0030003","terms_by_termid":{"GO:0006874":null,"GO:0006878":null,"GO:0006879":null,"GO:0006882":null,"GO:0007035":null,"GO:0010106":null,"GO:0010961":null,"GO:0030007":null,"GO:0030026":null,"GO:0030641":null,"GO:0032468":null,"GO:0033214":null,"GO:0033215":null,"GO:0051453":null}}


id: PBO:0061513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NSA2 pseudogene 3","termid":"PBO:0061513"}


id: GO:0150058
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A G protein-coupled receptor complex that serves as a receptor for amylin polypeptide (AMY) and consists of a calcitonin receptor (CTR/CALCR) and a receptor activity-modifying protein (RAMP) 3. Amylin receptor complex 3 (AMY3) also serves as a receptor for the amyloid-beta complex. Ligand binding to AMY3 results in increased cytosolic calcium ion levels and in activation on multiple intracellular signaling pathways.","definition_xrefs":["PMID:22500019","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylin receptor complex","termid":"GO:1903440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"amylin receptor complex 3","synonyms":[{"name":"AMY3 complex","type":"exact"}],"termid":"GO:0150058"}


id: GO:0019383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (+)-camphor, a bicyclic monoterpene ketone.","definition_xrefs":["MetaCyc:P601-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoterpenoid catabolic process","termid":"GO:0016100"},{"relation_name":"is_a","term_name":"(+)-camphor metabolic process","termid":"GO:0018882"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"(+)-camphor catabolic process","secondary_identifiers":["UM-BBD_pathwayID:cam"],"synonyms":[{"name":"(+)-camphor breakdown","type":"exact"},{"name":"(+)-camphor catabolism","type":"exact"},{"name":"(+)-camphor degradation","type":"exact"}],"termid":"GO:0019383"}


id: PBO:0077320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 59","termid":"PBO:0077320"}


id: MONDO:0030813
data:
  {"annotated_genes":["SJAG_03181"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86462],"is_not":false,"summary":null,"term":"MONDO:0030813"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03181":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 101 (varicella zoster virus-specific)","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619872","UMLS:C5676983","MEDGEN:1810668"],"synonyms":[{"name":"IMD101","type":"exact"},{"name":"immunodeficiency 101 (varicella zoster virus-specific)","type":"exact"}],"termid":"MONDO:0030813","terms_by_termid":{"MONDO:0030813":null},"xrefs":{"Monarch":{"xref_id":"0030813"}}}


id: PATO:0001731
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a plant by virtue of the bearer's disposition to shed foliage.","definition_xrefs":["PATOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shedability","termid":"PATO:0001729"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deciduous (plant)","termid":"PATO:0001731"}


id: PBO:0081708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 628","termid":"PBO:0081708"}


id: GO:0097047
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A chromosomal region that contains fork pausing elements influencing the progression and merging of DNA replication forks.","definition_xrefs":["PMID:20797631","GOC:mcc","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"chromosome","termid":"GO:0005694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005694","GO:0005575"],"is_obsolete":false,"name":"DNA replication termination region","synonyms":[{"name":"TER","type":"exact"}],"termid":"GO:0097047"}


id: GO:0006060
data:
  {"annotated_genes":["SJAG_00237"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104541],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006062"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexitol metabolic process","termid":"GO:0006059"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0005975","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"sorbitol metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:P461-PWY"],"synonyms":[{"name":"sorbitol metabolism","type":"exact"}],"termid":"GO:0006060","terms_by_termid":{"GO:0006062":null}}


id: GO:0120264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, extent or location of chromosome attachment to the nuclear envelope.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of localization","termid":"GO:0032879"},{"relation_name":"regulates","term_name":"chromosome attachment to the nuclear envelope","termid":"GO:0097240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of chromosome attachment to the nuclear envelope","termid":"GO:0120264"}


id: GO:1904775
data:
  {"annotated_genes":["SJAG_01672"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88667],"is_not":false,"summary":null,"term":"GO:1904775"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ubiquinone biosynthetic process.","definition_xrefs":["GO_REF:0000058","PMID:8125303","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"regulation of ubiquinone biosynthetic process","termid":"GO:0010795"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"positively_regulates","term_name":"ubiquinone biosynthetic process","termid":"GO:0006744"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01672":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006744"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006744"}],"interesting_parent_ids":["GO:0006744","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of ubiquinone biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of coenzyme Q biosynthesis","type":"narrow"},{"name":"activation of coenzyme Q biosynthetic process","type":"narrow"},{"name":"activation of coenzyme Q10 biosynthesis","type":"narrow"},{"name":"activation of coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"activation of coenzyme Q6 biosynthesis","type":"narrow"},{"name":"activation of coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"activation of coenzyme Q8 biosynthesis","type":"narrow"},{"name":"activation of coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"activation of coenzyme Q9 biosynthesis","type":"narrow"},{"name":"activation of coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"activation of ubiquinone anabolism","type":"narrow"},{"name":"activation of ubiquinone biosynthesis","type":"narrow"},{"name":"activation of ubiquinone biosynthetic process","type":"narrow"},{"name":"activation of ubiquinone formation","type":"narrow"},{"name":"activation of ubiquinone synthesis","type":"narrow"},{"name":"positive regulation of coenzyme Q biosynthesis","type":"exact"},{"name":"positive regulation of coenzyme Q biosynthetic process","type":"exact"},{"name":"positive regulation of coenzyme Q10 biosynthesis","type":"narrow"},{"name":"positive regulation of coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"positive regulation of coenzyme Q6 biosynthesis","type":"narrow"},{"name":"positive regulation of coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"positive regulation of coenzyme Q8 biosynthesis","type":"narrow"},{"name":"positive regulation of coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"positive regulation of coenzyme Q9 biosynthesis","type":"narrow"},{"name":"positive regulation of coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"positive regulation of ubiquinone anabolism","type":"exact"},{"name":"positive regulation of ubiquinone biosynthesis","type":"exact"},{"name":"positive regulation of ubiquinone formation","type":"exact"},{"name":"positive regulation of ubiquinone synthesis","type":"exact"},{"name":"up regulation of coenzyme Q biosynthesis","type":"exact"},{"name":"up regulation of coenzyme Q biosynthetic process","type":"exact"},{"name":"up regulation of coenzyme Q10 biosynthesis","type":"narrow"},{"name":"up regulation of coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"up regulation of coenzyme Q6 biosynthesis","type":"narrow"},{"name":"up regulation of coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"up regulation of coenzyme Q8 biosynthesis","type":"narrow"},{"name":"up regulation of coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"up regulation of coenzyme Q9 biosynthesis","type":"narrow"},{"name":"up regulation of coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"up regulation of ubiquinone anabolism","type":"exact"},{"name":"up regulation of ubiquinone biosynthesis","type":"exact"},{"name":"up regulation of ubiquinone biosynthetic process","type":"exact"},{"name":"up regulation of ubiquinone formation","type":"exact"},{"name":"up regulation of ubiquinone synthesis","type":"exact"},{"name":"up-regulation of coenzyme Q biosynthesis","type":"exact"},{"name":"up-regulation of coenzyme Q biosynthetic process","type":"exact"},{"name":"up-regulation of coenzyme Q10 biosynthesis","type":"narrow"},{"name":"up-regulation of coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"up-regulation of coenzyme Q6 biosynthesis","type":"narrow"},{"name":"up-regulation of coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"up-regulation of coenzyme Q8 biosynthesis","type":"narrow"},{"name":"up-regulation of coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"up-regulation of coenzyme Q9 biosynthesis","type":"narrow"},{"name":"up-regulation of coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"up-regulation of ubiquinone anabolism","type":"exact"},{"name":"up-regulation of ubiquinone biosynthesis","type":"exact"},{"name":"up-regulation of ubiquinone biosynthetic process","type":"exact"},{"name":"up-regulation of ubiquinone formation","type":"exact"},{"name":"up-regulation of ubiquinone synthesis","type":"exact"},{"name":"upregulation of coenzyme Q biosynthesis","type":"exact"},{"name":"upregulation of coenzyme Q biosynthetic process","type":"exact"},{"name":"upregulation of coenzyme Q10 biosynthesis","type":"narrow"},{"name":"upregulation of coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"upregulation of coenzyme Q6 biosynthesis","type":"narrow"},{"name":"upregulation of coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"upregulation of coenzyme Q8 biosynthesis","type":"narrow"},{"name":"upregulation of coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"upregulation of coenzyme Q9 biosynthesis","type":"narrow"},{"name":"upregulation of coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"upregulation of ubiquinone anabolism","type":"exact"},{"name":"upregulation of ubiquinone biosynthesis","type":"exact"},{"name":"upregulation of ubiquinone biosynthetic process","type":"exact"},{"name":"upregulation of ubiquinone formation","type":"exact"},{"name":"upregulation of ubiquinone synthesis","type":"exact"}],"termid":"GO:1904775","terms_by_termid":{"GO:1904775":null}}


id: MONDO:0016064
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cleft palate is a fissure type embryopathy that affects the soft and hard palate to varying degrees.","definition_xrefs":["Orphanet:2014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orofacial cleft","termid":"MONDO:0000358"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleft palate","secondary_identifiers":["icd11.foundation:2129534948","ICD9:749.00","ICD9:749.0","UMLS:C2981150","DOID:674","MedDRA:10009269","MEDGEN:756015","MESH:D002972","NCIT:C87069","SCTID:63567004"],"synonyms":[{"name":"palatoschisis","type":"exact"},{"name":"uranostaphyloschisis","type":"exact"}],"termid":"MONDO:0016064","xrefs":{"Monarch":{"xref_id":"0016064"}}}


id: MONDO:0014616
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Skint1-like pseudogene (obsolete MONDO:0014616)","secondary_identifiers":["OMIM:616392"],"synonyms":[{"name":"SKINT1-like pseudogene","type":"related"},{"name":"SKINTL","type":"related"},{"name":"Skint1-like pseudogene","type":"exact"},{"name":"Skint1L","type":"related"},{"name":"Skintp","type":"related"}],"termid":"MONDO:0014616","xrefs":{"Monarch":{"xref_id":"0014616"}}}


id: PBO:0083527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF SAS10/YDL153C, a component of the small ribosomal subunit processosome","termid":"PBO:0083527"}


id: GO:0035915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components by an organism to form a pore complex in a membrane of another organism.","definition_xrefs":["PMID:21549739","GOC:bf","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disruption of plasma membrane integrity in another organism","termid":"GO:0051673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pore formation in membrane of another organism","synonyms":[{"name":"pore complex assembly in other organism","type":"exact"},{"name":"pore complex biogenesis in other organism","type":"exact"},{"name":"pore formation in membrane of other organism","type":"exact"},{"name":"pore formation in other organism","type":"exact"},{"name":"pore-forming toxin activity","type":"related"}],"termid":"GO:0035915"}


id: MONDO:0042488
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with true tapeworms of the helminth subclass Cestoda.","definition_xrefs":["MESH:D002590"],"direct_ancestors":[{"relation_name":"is_a","term_name":"helminthiasis","termid":"MONDO:0004664"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cestode infectious disease","secondary_identifiers":["ICD9:123.9","ICD9:123.8","SCTID:86133004"],"synonyms":[{"name":"Bertielliases","type":"related"},{"name":"Bertielliasis","type":"related"},{"name":"Cenuriases","type":"related"},{"name":"Cenuriasis","type":"related"},{"name":"Cestoda caused disease or disorder","type":"exact"},{"name":"Cestoda disease or disorder","type":"exact"},{"name":"Cestoda infectious disease","type":"exact"},{"name":"Cestodiasis","type":"related"},{"name":"Cestodosis","type":"related"},{"name":"Coenuriases","type":"related"},{"name":"Coenuriasis","type":"related"},{"name":"Dipylidiases","type":"related"},{"name":"Dipylidiasis","type":"related"},{"name":"Raillietiniases","type":"related"},{"name":"Raillietiniasis","type":"related"},{"name":"cestode infection","type":"exact"},{"name":"cestode infestation","type":"related"},{"name":"disease due to Cestoda","type":"related"},{"name":"infection, cestode","type":"related"},{"name":"infection, tapeworm","type":"related"},{"name":"infections, cestode","type":"related"},{"name":"infections, tapeworm","type":"related"},{"name":"tapeworm infection","type":"related"},{"name":"tapeworm infections","type":"related"}],"termid":"MONDO:0042488","xrefs":{"Monarch":{"xref_id":"0042488"}}}


id: PBO:0077911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPT1 pseudogene 2","termid":"PBO:0077911"}


id: PBO:0066708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 5","termid":"PBO:0066708"}


id: GO:0098556
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the rough endoplasmic reticulum membrane that faces the cytoplasm.","definition_xrefs":["GOC:ab","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic side of endoplasmic reticulum membrane","termid":"GO:0098554"},{"relation_name":"part_of","term_name":"rough endoplasmic reticulum membrane","termid":"GO:0030867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"part_of","termid":"GO:0005789"}],"interesting_parent_ids":["GO:0005783","GO:0005789","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cytoplasmic side of rough endoplasmic reticulum membrane","termid":"GO:0098556"}


id: GO:1901832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of all-trans-neoxanthin.","definition_xrefs":["PMID:11029576","GOC:yaf","MetaCyc:PWY-6809","UniPathway:UPA00388","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xanthophyll catabolic process","termid":"GO:0016124"},{"relation_name":"is_a","term_name":"olefinic compound catabolic process","termid":"GO:0120256"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"},{"relation_name":"is_a","term_name":"all-trans-neoxanthin metabolic process","termid":"GO:1901831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"all-trans-neoxanthin catabolic process","synonyms":[{"name":"all-trans-neoxanthin breakdown","type":"exact"},{"name":"all-trans-neoxanthin catabolism","type":"exact"},{"name":"all-trans-neoxanthin degradation","type":"exact"},{"name":"neoxanthin breakdown","type":"exact"},{"name":"neoxanthin catabolic process","type":"exact"},{"name":"neoxanthin catabolism","type":"exact"},{"name":"neoxanthin degradation","type":"exact"}],"termid":"GO:1901832"}


id: PBO:0057622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1185-2","termid":"PBO:0057622"}


id: PBO:0031887
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae RFC3","termid":"PBO:0031887"}


id: PBO:0068687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 68, pseudogene","termid":"PBO:0068687"}


id: GO:0016964
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with alpha-2 macroglobulin and delivering alpha-2 macroglobulin into the cell via receptor-mediated endocytosis.","definition_xrefs":["PMID:6188403","GOC:bf","GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cargo receptor activity","termid":"GO:0038024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038024"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038024","GO:0003674"],"is_obsolete":false,"name":"alpha-2 macroglobulin receptor activity","termid":"GO:0016964"}


id: GO:0071065
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular cell adhesion molecule-1.","definition_xrefs":["PMID:10209034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex","synonyms":[{"name":"ITGA9-ITGB1-VCAM1 complex","type":"narrow"}],"termid":"GO:0071065"}


id: MONDO:0009325
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete deafness-enamel hypoplasia-nail defects syndrome (obsolete MONDO:0009325)","termid":"MONDO:0009325","xrefs":{"Monarch":{"xref_id":"0009325"}}}


id: GO:0030703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Construction of the eggshell, a product of the somatic follicle cell epithelium and a structure that supports the egg in a hostile environment, minimizing water loss whilst allowing gas exchanges essential for embryonic respiration.","definition_xrefs":["ISBN:0879694238","GOC:mtg_sensu","PMID:10822261"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"oogenesis","termid":"GO:0048477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"eggshell formation","termid":"GO:0030703"}


id: GO:1990924
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The lipid bilayer surrounding the amphisome and separating its contents from the cell cytoplasm.","definition_xrefs":["PMID:17984323","GOC:bhm"],"gene_count":0,"genotype_count":0,"name":"obsolete amphisome membrane (obsolete GO:1990924)","synonyms":[{"name":"amphisomal membrane","type":"exact"}],"termid":"GO:1990924"}


id: PBO:0075868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family pseudogene 8","termid":"PBO:0075868"}


id: GO:1902078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of lateral motor column neuron migration.","definition_xrefs":["PMID:20711475","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lateral motor column neuron migration","termid":"GO:1902076"},{"relation_name":"is_a","term_name":"positive regulation of motor neuron migration","termid":"GO:1905485"},{"relation_name":"positively_regulates","term_name":"lateral motor column neuron migration","termid":"GO:0097477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lateral motor column neuron migration","synonyms":[{"name":"activation of lateral motor column neuron migration","type":"narrow"},{"name":"up regulation of lateral motor column neuron migration","type":"exact"},{"name":"up-regulation of lateral motor column neuron migration","type":"exact"},{"name":"upregulation of lateral motor column neuron migration","type":"exact"}],"termid":"GO:1902078"}


id: MONDO:0700186
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Histiocytic sarcoma occurring in a cat.","definition_xrefs":["NCIT:C157503"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feline neoplasm","termid":"MONDO:0700175"},{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feline histiocytic sarcoma","termid":"MONDO:0700186","xrefs":{"Monarch":{"xref_id":"0700186"}}}


id: PBO:0048131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fucosyltransferase 11","termid":"PBO:0048131"}


id: PBO:0085909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLL032C is not an essential gene","termid":"PBO:0085909"}


id: MONDO:0020051
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete total autosomal trisomy (obsolete MONDO:0020051)","secondary_identifiers":["Orphanet:98131"],"termid":"MONDO:0020051","xrefs":{"Monarch":{"xref_id":"0020051"}}}


id: GO:1990823
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leukemia inhibitory factor stimulus.","definition_xrefs":["PMID:12801913"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to leukemia inhibitory factor","synonyms":[{"name":"response to CDF","type":"exact"},{"name":"response to LIF","type":"exact"},{"name":"response to cholinergic differentiation factor","type":"exact"}],"termid":"GO:1990823"}


id: FYPO:0006722
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the Cdr2 medial cortical node complex is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:28924043"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to Cdr2 medial cortical node complex","synonyms":[{"name":"normal protein localisation to Cdr2 medial cortical node complex","type":"exact"},{"name":"normal protein localization to Cdr2 medial cortical node complex during mitotic cell cycle","type":"related"},{"name":"normal protein localization to Cdr2 medial cortical node complex during vegetative growth","type":"exact"}],"termid":"FYPO:0006722"}


id: PBO:0081965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZPR1 zinc finger","termid":"PBO:0081965"}


id: GO:2000301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle exocytosis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of regulated secretory pathway","termid":"GO:1903306"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle exocytosis","termid":"GO:2000300"},{"relation_name":"negatively_regulates","term_name":"synaptic vesicle exocytosis","termid":"GO:0016079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"negative regulation of synaptic vesicle exocytosis","termid":"GO:2000301"}


id: PBO:0056819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 12","termid":"PBO:0056819"}


id: GO:0050835
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The incorporation of iron into a 4Fe-4S iron-sulfur cluster via tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide.","definition_xrefs":["RESID:AA0356"],"gene_count":0,"genotype_count":0,"name":"obsolete iron incorporation into iron-sulfur cluster via tris-L-cysteinyl S-adenosylmethion-N,O-diyl tetrairon tetrasulfide (obsolete GO:0050835)","termid":"GO:0050835"}


id: GO:0019948
data:
  {"annotated_genes":["SJAG_00604","SJAG_02082","SJAG_05032"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95696,97250,103980],"is_not":false,"summary":null,"term":"GO:0019948"}]},"cv_name":"molecular_function","definition":"Catalysis of the activation of the proteolytically processed small ubiquitin-related modifier SUMO, through the formation of an ATP-dependent high-energy thiolester bond.","definition_xrefs":["PMID:10187858","GOC:rn","PMID:11265250"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like modifier activating enzyme activity","termid":"GO:0008641"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00604":null,"SJAG_02082":null,"SJAG_05032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"SUMO activating enzyme activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-2993784","Reactome:R-HSA-2990833","Reactome:R-HSA-2993781","GO:0017115"],"synonyms":[{"name":"SMT3 activating enzyme","type":"exact"},{"name":"SUMO E1 activator enzyme","type":"exact"}],"termid":"GO:0019948","terms_by_termid":{"GO:0019948":null}}


id: PBO:0001657
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinitis pigmentosa","termid":"PBO:0001657"}


id: MONDO:0958094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic neurological disorder characterized by congenital or early-onset sensorineural deafness and adult-onset progressive leukoencephalopathy. Progressive cognitive impairment and behavioral abnormalities are observed in the second or third decade of life, sometimes preceded by mild developmental delay and learning difficulties. Visual impairment in adult age has been reported. No central nervous system calcification is reported.","definition_xrefs":["Orphanet:652532"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"adult-onset progressive leukoencephalopathy-early-onset deafness","termid":"MONDO:0958094","xrefs":{"Monarch":{"xref_id":"0958094"}}}


id: PBO:0061085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NK2 homeobox 3","termid":"PBO:0061085"}


id: GO:0052197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by host of symbiont defense response (obsolete GO:0052197)","synonyms":[{"name":"activation by host of symbiont defense response","type":"narrow"},{"name":"stimulation by host of symbiont defense response","type":"narrow"},{"name":"up regulation by host of symbiont defense response","type":"exact"},{"name":"up-regulation by host of symbiont defense response","type":"exact"},{"name":"upregulation by host of symbiont defense response","type":"exact"}],"termid":"GO:0052197"}


id: MONDO:0010819
data:
  {"annotated_genes":["SJAG_01356","SJAG_02885"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85589,85590],"is_not":false,"summary":null,"term":"MONDO:0010819"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Stargardt disease","termid":"MONDO:0019353"},{"relation_name":"is_a","term_name":"ELOVL4-related maculopathy","termid":"MONDO:0700227"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01356":null,"SJAG_02885":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Stargardt disease 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:333146","OMIM:600110","GARD:15314","UMLS:C1838644","MESH:C535805"],"synonyms":[{"name":"STGD3","type":"related"},{"name":"Stargardt disease 3","type":"exact"},{"name":"Stargardt disease type 3","type":"exact"},{"name":"Stargardt-like macular dystrophy, autosomal dominant","type":"related"},{"name":"macular dystrophy with flecks, type 3","type":"related"}],"termid":"MONDO:0010819","terms_by_termid":{"MONDO:0010819":null},"xrefs":{"Monarch":{"xref_id":"0010819"}}}


id: MONDO:1012560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dysplastic gangliocytoma of the cerebellum, non-human animal","termid":"MONDO:1011826"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysplastic gangliocytoma of the cerebellum, domestic cat","secondary_identifiers":["OMIA:002529-9685"],"termid":"MONDO:1012560","xrefs":{"Monarch":{"xref_id":"1012560"}}}


id: MONDO:0007875
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Larsen syndrome (LS) is a rare skeletal dysplasia characterized by congenital dislocation of large joints, foot deformities, cervical spine dysplasia, scoliosis, spatula-shaped distal phalanges and distinctive craniofacial abnormalities, including cleft palate.","definition_xrefs":["Orphanet:503"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with multiple joint dislocations (obsolete MONDO:0019700)","termid":"MONDO:0019700"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"filamin-related bone disorder","termid":"MONDO:0019690"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Larsen syndrome","secondary_identifiers":["MEDGEN:104500","MESH:C580241","NANDO:2201019","NORD:1349","ICD9:759.89","OMIM:150250","SCTID:63387002","GARD:6860","icd11.foundation:607849551","UMLS:C0175778","DOID:14764"],"synonyms":[{"name":"LRS","type":"related"},{"name":"Larsen syndrome","type":"exact"},{"name":"autosomal dominant Larsen syndrome","type":"related"},{"name":"dominant Larsen syndrome","type":"exact"}],"termid":"MONDO:0007875","xrefs":{"Monarch":{"xref_id":"0007875"}}}


id: GO:0019379
data:
  {"annotated_genes":["SJAG_04060","SJAG_04953"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88248,99501],"is_not":false,"summary":null,"term":"GO:0019379"}]},"cv_name":"biological_process","definition":"The pathway by which inorganic sulfate is processed and incorporated into sulfated compounds, where the phosphoadenylyl sulfate reduction step is catalyzed by the enzyme phosphoadenylyl-sulfate reductase (thioredoxin) (EC:1.8.4.8).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate assimilation","termid":"GO:0000103"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04060":null,"SJAG_04953":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:SO4ASSIM-PWY"],"synonyms":[{"name":"sulphate assimilation, phosphoadenylyl sulphate reduction by a phosphoadenylyl-sulphate reductase (thioredoxin)","type":"exact"}],"termid":"GO:0019379","terms_by_termid":{"GO:0019379":null}}


id: PBO:0034814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDP-diacylglycerol-serine O-phosphatidyltransferase Pps1","termid":"PBO:0034814"}


id: PBO:0009256
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human ARPC3","termid":"PBO:0009256"}


id: PBO:0029959
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ubiquinol-cytochrome-c_reductase_activity","termid":"PBO:0029959"}


id: GO:1905715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cornification.","definition_xrefs":["PMID:26014679","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of programmed cell death","termid":"GO:0043067"},{"relation_name":"regulates","term_name":"cornification","termid":"GO:0070268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cornification","termid":"GO:1905715"}


id: PATO:0001433
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single process which describes the growth of an organism, structure, or group of organisms.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"process quality","termid":"PATO:0001236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth quality of occurrent","secondary_identifiers":["PATO:0001489"],"synonyms":[{"name":"growth quality of a process","type":"related"},{"name":"growth timing quality","type":"related"}],"termid":"PATO:0001433"}


id: GO:0070852
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A neuron projection that is found in unipolar neurons and corresponds to the region between the cell body and the point at which the single projection branches.","definition_xrefs":["GOC:dos","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection","termid":"GO:0043005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cell body fiber","synonyms":[{"name":"cell body fibre","type":"exact"},{"name":"primary neurite","type":"related"}],"termid":"GO:0070852"}


id: PBO:0111834
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jmjN domain","termid":"PBO:0111834"}


id: GO:0016008
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The larger of the two mitochondrial derivatives that arise by the unfolding of the Nebenkern during flagellum elongation; the major mitochondrial derivative is ovoid and darker than the minor derivative.","definition_xrefs":["PMID:30802236","PMID:24211517","PMID:17123504","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial derivative","termid":"GO:0016007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"major mitochondrial derivative","termid":"GO:0016008"}


id: PBO:0088482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S24","termid":"PBO:0088482"}


id: GO:0070279
data:
  {"annotated_genes":["SJAG_03055","SJAG_00673","SJAG_02205","SJAG_04678","SJAG_03312","SJAG_00495","SJAG_02972","SJAG_01766","SJAG_00097","SJAG_05230","SJAG_03914","SJAG_00186","SJAG_03861","SJAG_02305","SJAG_01019","SJAG_04988","SJAG_04145","SJAG_00714","SJAG_00582","SJAG_03961","SJAG_03671","SJAG_02791","SJAG_00432","SJAG_03102","SJAG_04178","SJAG_03306","SJAG_03434","SJAG_00937","SJAG_04149","SJAG_00830"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[117886,110001,106372,93973,101808,103098,113430,105033,98525,68389,59858,100337,98887,65606,64238,91193,91704,103280,95264,109932,88150,90788,93117,106264,87319,97851,66986,110727,111308,92263],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030170"}]},"cv_name":"molecular_function","definition":"Binding to a vitamin B6 compound: pyridoxal, pyridoxamine, pyridoxine, or the active form, pyridoxal phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin binding","termid":"GO:0019842"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":30,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_00186":null,"SJAG_00432":null,"SJAG_00495":null,"SJAG_00582":null,"SJAG_00673":null,"SJAG_00714":null,"SJAG_00830":null,"SJAG_00937":null,"SJAG_01019":null,"SJAG_01766":null,"SJAG_02205":null,"SJAG_02305":null,"SJAG_02791":null,"SJAG_02972":null,"SJAG_03055":null,"SJAG_03102":null,"SJAG_03306":null,"SJAG_03312":null,"SJAG_03434":null,"SJAG_03671":null,"SJAG_03861":null,"SJAG_03914":null,"SJAG_03961":null,"SJAG_04145":null,"SJAG_04149":null,"SJAG_04178":null,"SJAG_04678":null,"SJAG_04988":null,"SJAG_05230":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"vitamin B6 binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"termid":"GO:0070279","terms_by_termid":{"GO:0030170":null}}


id: GO:0004484
data:
  {"annotated_genes":["SJAG_01724"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107707],"is_not":false,"summary":null,"term":"GO:0004484"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: GTP + (5')pp-Pur-mRNA = diphosphate + G(5')ppp-Pur-mRNA; G(5')ppp-Pur-mRNA is mRNA containing a guanosine residue linked 5' through three phosphates to the 5' position of the terminal residue.","definition_xrefs":["EC:2.7.7.50"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA guanylyltransferase activity","termid":"GO:0008192"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0140098","GO:0016779","GO:0003824"],"is_obsolete":false,"name":"mRNA guanylyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-77081","RHEA:54592","MetaCyc:MRNA-GUANYLYLTRANSFERASE-RXN","Reactome:R-HSA-77083","Reactome:R-HSA-9815529"],"synonyms":[{"name":"GTP--RNA guanylyltransferase activity","type":"related"},{"name":"GTP:mRNA guanylyltransferase activity","type":"exact"},{"name":"mRNA capping enzyme activity","type":"related"},{"name":"messenger RNA guanylyltransferase activity","type":"related"},{"name":"protein lambda2","type":"related"}],"termid":"GO:0004484","terms_by_termid":{"GO:0004484":null}}


id: PBO:0077615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMSB4X pseudogene 6","termid":"PBO:0077615"}


id: FYPO:0004684
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, is elongated, and has two nuclei but no septum.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable elongated multinucleate aseptate vegetative cell","termid":"FYPO:0002024"},{"relation_name":"is_a","term_name":"binucleate aseptate vegetative cell","termid":"FYPO:0004562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000005","FYPO:0001985","FYPO:0000032","FYPO:0000631"],"is_obsolete":false,"name":"inviable elongated binucleate aseptate cell","synonyms":[{"name":"inviable elongated binucleate aseptate cell during mitotic cell cycle","type":"related"},{"name":"inviable elongated binucleate aseptate cell during vegetative growth","type":"exact"},{"name":"inviable elongated binucleate aseptate vegetative cell","type":"exact"},{"name":"lethal; elongated binucleate aseptate cell","type":"exact"}],"termid":"FYPO:0004684"}


id: PBO:0042784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 128","termid":"PBO:0042784"}


id: PBO:0091907
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"a disordered region N-terminal to the YTH domain stabilizes RNA binding, and becomes more ordered upon binding","termid":"PBO:0091907"}


id: GO:0052496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism reduces the flow of fluid within the symbiont xylem, the tissue in plants that carries water and nutrients up from the roots to the shoot and leaves. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete occlusion by host of symbiont xylem (obsolete GO:0052496)","termid":"GO:0052496"}


id: GO:0160018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of platelet rolling.","definition_xrefs":["GO_REF:0000058","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of heterotypic cell-cell adhesion","termid":"GO:0034116"},{"relation_name":"is_a","term_name":"regulation of platelet rolling","termid":"GO:0160017"},{"relation_name":"positively_regulates","term_name":"platelet rolling","termid":"GO:0160015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of platelet rolling","termid":"GO:0160018"}


id: PR:Q10429
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A condensin complex subunit 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04699","PANTHER:PTHR14418:SF5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"condensin complex subunit 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC188.03","secondary_identifiers":["UniProtKB:Q10429"],"synonyms":[{"name":"CAPG homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NCAPG","type":"exact"},{"name":"p100 (Schizosaccharomyces pombe 972h-)","type":"broad"}],"termid":"PR:Q10429"}


id: PBO:0075376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRY-box transcription factor 13","termid":"PBO:0075376"}


id: PBO:0067863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 165","termid":"PBO:0067863"}


id: FYPO:0005799
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule plus ends remain in contact with the cell cortex at cell tips for a shorter time than normal.","definition_xrefs":["PMID:11007487","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization during vegetative growth","termid":"FYPO:0001350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased microtubule dwell time at cell tip","synonyms":[{"name":"decreased microtubule dwell time at cell end","type":"exact"},{"name":"decreased microtubule dwell time at cell tip during mitotic cell cycle","type":"related"},{"name":"decreased microtubule dwell time at cell tip during vegetative growth","type":"exact"},{"name":"decreased microtubule plus end dwell time at cell tip","type":"exact"},{"name":"reduced microtubule dwell time at cell tip","type":"exact"}],"termid":"FYPO:0005799"}


id: MONDO:0020489
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete familial hyperreninemic hypoaldosteronism type 1 (obsolete MONDO:0020489)","secondary_identifiers":["Orphanet:99763","NANDO:2200365"],"synonyms":[{"name":"18-hydroxylase deficiency","type":"exact"},{"name":"18-oxidase deficiency","type":"exact"},{"name":"CMO I","type":"exact"},{"name":"CMO II","type":"exact"},{"name":"FHHA1","type":"exact"},{"name":"aldosterone synthase deficiency","type":"exact"},{"name":"corticosterone methyloxidase deficiency type I","type":"exact"}],"termid":"MONDO:0020489","xrefs":{"Monarch":{"xref_id":"0020489"}}}


id: MONDO:0010261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"excluded_subClassOf","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"excluded_subClassOf","term_name":"microphthalmia, Lenz type","termid":"MONDO:0018924"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"syndromic microphthalmia","termid":"MONDO:0016073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"microphthalmia, syndromic 2","secondary_identifiers":["Orphanet:2712","DOID:0111809","GARD:4628","ICD9:759.89","OMIM:300166","MEDGEN:337547","UMLS:C1846265","SCTID:699300009"],"synonyms":[{"name":"ANOP2 (formerly)","type":"related"},{"name":"MAA2 (formerly)","type":"related"},{"name":"MCOPS2","type":"related"},{"name":"OFCD syndrome","type":"exact"},{"name":"cataract-microphthalmia-radiculomegaly-cardiac septal defect syndrome","type":"exact"},{"name":"microphthalmia cataracts radiculomegaly and septal heart defects","type":"related"},{"name":"microphthalmia syndromic 2","type":"exact"},{"name":"microphthalmia, cataracts, radiculomegaly, and septal heart defects","type":"related"},{"name":"microphthalmia, syndromic 2","type":"exact"},{"name":"microphthalmia, syndromic 2, X-linked dominant","type":"exact"},{"name":"microphthalmia, syndromic type 2","type":"exact"},{"name":"oculofaciocardiodental syndrome","type":"exact"},{"name":"syndromic microphthalmia type 2","type":"related"}],"termid":"MONDO:0010261","xrefs":{"Monarch":{"xref_id":"0010261"}}}


id: MONDO:0015090
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Autosomal recessive form of pure hereditary spastic paraplegia.","definition_xrefs":["MONDO:patterns/autosomal_recessive"],"gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive pure spastic paraplegia (obsolete MONDO:0015090)","secondary_identifiers":["Orphanet:100982"],"synonyms":[{"name":"autosomal recessive pure HSP","type":"exact"},{"name":"autosomal recessive pure SPG","type":"exact"},{"name":"autosomal recessive pure hereditary spastic paraplegia","type":"exact"},{"name":"autosomal recessive uncomplicated HSP","type":"exact"},{"name":"autosomal recessive uncomplicated SPG","type":"exact"},{"name":"autosomal recessive uncomplicated spastic paraplegia","type":"exact"},{"name":"pure hereditary spastic paraplegia, autosomal recessive","type":"exact"}],"termid":"MONDO:0015090","xrefs":{"Monarch":{"xref_id":"0015090"}}}


id: PBO:0004322
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.41","termid":"PBO:0004322"}


id: PBO:0084232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hydrophilin essential in desiccation-rehydration process; stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway; GRE1 has a paralog, SIP18, that arose from the whole genome duplication","termid":"PBO:0084232"}


id: FYPO:0003274
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing S-nitrosoglutathione (GSNO).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0002058","FYPO:0002060","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on GSNO","synonyms":[{"name":"normal cell population growth in presence of GSNO","type":"exact"},{"name":"normal cell population growth on GSNO","type":"exact"},{"name":"normal cell population growth on S-nitrosoglutathione","type":"exact"},{"name":"normal cellular response to GSNO","type":"related"},{"name":"normal vegetative cell population growth on GSNO","type":"exact"}],"termid":"FYPO:0003274"}


id: PBO:0005246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically upregulated gene Mug123","termid":"PBO:0005246"}


id: MONDO:0100113
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Nonsyndromic deafness, keratitis-ichthyosis-deafness syndrome, and palmoplantar keratoderma with deafness have all been associated with autosomal dominant variants in GJB2. Reported cases share hearing loss as a feature, therefore it is likely that these phenotypes exist along a spectrum of the same disease, differing in severity of skin phenotypes.","definition_xrefs":["PMID:16059934","PMID:20583176","PMID:9856479","PMID:24945352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse palmoplantar keratoderma","termid":"MONDO:0017666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"hearing loss with skin disease","termid":"MONDO:0100113","xrefs":{"Monarch":{"xref_id":"0100113"}}}


id: MONDO:0100115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute onset of focal limb weakness that is associated mainly with gray matter abnormalities or CSF pleocytosis, but which is without an apparent cause.","definition_xrefs":["NCIT:C128379"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myelitis","termid":"MONDO:0002565"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute flaccid myelitis","secondary_identifiers":["MESH:C000629404","Orphanet:623801","GARD:13142","MEDGEN:927532","UMLS:C4290000","DOID:0080947"],"synonyms":[{"name":"AFM","type":"exact"}],"termid":"MONDO:0100115","xrefs":{"Monarch":{"xref_id":"0100115"}}}


id: PBO:0036447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAN complex protein phosphotransferase subunit Ppk26 (predicted)","termid":"PBO:0036447"}


id: PBO:0063703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidoglycan recognition protein 2","termid":"PBO:0063703"}


id: MONDO:0001100
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Excessive enlargement of one or both breasts. Causes include pregnancy, obesity, and penicillamine therapy. It may result in neck, back, and shoulder pain.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast disorder","termid":"MONDO:0002657"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypertrophy of breast","secondary_identifiers":["UMLS:C0020565","MEDGEN:43789","DOID:10688","ICD9:611.1","SCTID:372281005","ICD10CM:N62","icd11.foundation:2078176266","NCIT:C3125"],"synonyms":[{"name":"breast Hypertrophy","type":"exact"},{"name":"breasts enlarged","type":"exact"},{"name":"drug-induced gigantomastia (subtype)","type":"related"},{"name":"gestational gigantomastia (subtype)","type":"related"},{"name":"gigantomastia","type":"exact"},{"name":"hypertrophy of the breast","type":"exact"},{"name":"idiopathic gigantomastia (subtype)","type":"related"},{"name":"juvenile gigantomastia (subtype)","type":"related"},{"name":"large breast","type":"exact"},{"name":"macromastia","type":"exact"},{"name":"medication-induced gigantomastia (subtype)","type":"related"},{"name":"pregnancy-induced gigantomastia (subtype)","type":"related"},{"name":"puberty-induced gigantomastia (subtype)","type":"related"}],"termid":"MONDO:0001100","xrefs":{"Monarch":{"xref_id":"0001100"}}}


