# terms

id: MONDO:0019808
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare congenital heart defect characterized by the complete failure of the aortic valve to open. It is manifested during infancy with cyanosis, dyspnea, and rapidly progressing heart failure.","definition_xrefs":["NCIT:C98818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart disease","termid":"MONDO:0005453"},{"relation_name":"is_a","term_name":"congenital aortic valve stenosis","termid":"MONDO:0017735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"aortic valve atresia","secondary_identifiers":["HP:0010883","icd11.foundation:1700740306","UMLS:C0265843","MEDGEN:451016","SCTID:51442005","MedDRA:10066801","Orphanet:95448","GARD:19260"],"synonyms":[{"name":"aortic valve atresia","type":"exact"},{"name":"aortic valve atresia (disease)","type":"exact"},{"name":"congenital aortic valve atresia","type":"exact"},{"name":"congenital atresia of aortic valve","type":"exact"}],"termid":"MONDO:0019808","xrefs":{"Monarch":{"xref_id":"0019808"}}}


id: GO:0052599
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: N-methylputrescine + H2O + O2 = N-methylaminobutanal + NH3 + hydrogen peroxide + H+.","definition_xrefs":["PMID:17283012","PMID:24287136"],"gene_count":0,"genotype_count":0,"name":"obsolete methylputrescine oxidase activity (obsolete GO:0052599)","termid":"GO:0052599"}


id: PBO:0058587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6720","termid":"PBO:0058587"}


id: PBO:0041304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 calcium dependent domain containing 6","termid":"PBO:0041304"}


id: PBO:0088730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-coenzyme A thioesterase The13","termid":"PBO:0088730"}


id: PATO:0001704
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of violet hue and high brightness.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"violet","termid":"PATO:0001424"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"light violet","termid":"PATO:0001704"}


id: PBO:0080190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vascular endothelial growth factor C","termid":"PBO:0080190"}


id: GO:0021584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the pons. This process pertains to the initial formation of a structure from unspecified parts. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum.","definition_xrefs":["GOC:dph","GOC:dgh","GOC:jid","GO_REF:0000021","ISBN:0838580343","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"hindbrain formation","termid":"GO:0021576"},{"relation_name":"part_of","term_name":"pons morphogenesis","termid":"GO:0021583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pons formation","termid":"GO:0021584"}


id: MONDO:0017043
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A low grade childhood congenital malignant neoplasm arising from the kidney. It is characterized by the presence of fibroblastic cells. The majority of cases occur in the first year of life. Complete excision is usually associated with an excellent prognosis.","definition_xrefs":["NCIT:C6569"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesoblastic nephroma","termid":"MONDO:0003130"},{"relation_name":"is_a","term_name":"embryonal neoplasm","termid":"MONDO:0005564"},{"relation_name":"is_a","term_name":"childhood malignant kidney neoplasm","termid":"MONDO:0036511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005240"],"is_obsolete":false,"name":"congenital mesoblastic nephroma","secondary_identifiers":["icd11.foundation:2001572901","Orphanet:2665","MedDRA:10070665","UMLS:C1332965","DOID:4773","ICDO:8960/1","GARD:1493","MEDGEN:232058"],"synonyms":[{"name":"CMN","type":"exact"},{"name":"CMn","type":"exact"},{"name":"congenital mesoblastic nephroma","type":"exact"},{"name":"mesoblastic nephroma","type":"broad"},{"name":"stromal nephroma, malignant","type":"exact"}],"termid":"MONDO:0017043","xrefs":{"Monarch":{"xref_id":"0017043"}}}


id: PBO:0034733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Smc5-6 complex non-SMC subunit SUMO ligase subunit Nse2","termid":"PBO:0034733"}


id: PBO:0039876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 32","termid":"PBO:0039876"}


id: MOD:00049
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-histidine residue to diphthamide.","definition_xrefs":["PubMed:7430147","RESID:AA0040","Unimod:375#H","DeltaMass:122","ChEBI:16692","PubMed:15316019"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine","synonyms":[{"name":"(2R)-1-amino-4-(4-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-2-yl)-N,N,N-trimethyl-1-oxobutan-2-aminium","type":"exact"},{"name":"(3-[4-(2-amino-2-carboxy-ethyl)-1H-imidazol-2-yl]-1-carbamoyl-propyl)-trimethylammonium","type":"exact"},{"name":"1-azanyl-4-(4-[2-azanyl-2-carboxyethyl]-1H-imidazol-2-yl)-N,N,N-trimethyl-1-oxobutan-2-azanium","type":"exact"},{"name":"2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine","type":"exact"},{"name":"2-[(R)-3-carboxamido-3-(trimethylammonio)propyl]-4-((S)-2-amino-2-carboxyethyl)-1H-imidazole","type":"exact"},{"name":"2-[3-carboxamido-3-(trimethylammonio)propyl]histidine","type":"exact"},{"name":"2-amino-3-[[2-(3-amino-3-carbamoyl-prop-1-enyl)-1,1,3-trimethyl-2,3-dihydroimidazol-5-yl]]propanoic acid","type":"exact"},{"name":"2-amino-4-[[5-(2-amino-2-carboxylato-ethyl)-1,1,3-trimethyl-2,3-dihydroimidazol-2-yl]]but-3-enamide","type":"exact"},{"name":"Diphth","type":"exact"},{"name":"Diphthamide","type":"related"},{"name":"MOD_RES Diphthamide","type":"exact"},{"name":"alpha-(aminocarbonyl)-4-(2-amino-2-carboxyethyl)-N,N,N-trimethyl-1H-imidazole-2-propanaminium","type":"exact"},{"name":"diphthamide","type":"exact"},{"name":"diphthamide (from histidine)","type":"exact"}],"termid":"MOD:00049"}


id: PBO:0002159
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"appears to be part of transcript of adjacent gene","termid":"PBO:0002159"}


id: PBO:0056320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase kinase 5","termid":"PBO:0056320"}


id: GO:1902099
data:
  {"annotated_genes":["SJAG_02451","SJAG_02380","SJAG_03681","SJAG_04884","SJAG_02498","SJAG_03327","SJAG_01837","SJAG_01297","SJAG_03353","SJAG_01679","SJAG_03048","SJAG_04968","SJAG_00666","SJAG_01515","SJAG_02336","SJAG_04573","SJAG_04999","SJAG_02169","SJAG_00145","SJAG_01082","SJAG_00883","SJAG_01330","SJAG_03126","SJAG_04259","SJAG_04126","SJAG_04699","SJAG_01805"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111451,107739,103394,106723,113763,90204,99089,115397,113275],"is_not":false,"rel_names":["regulates","is_a","negatively_regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[105807,113993],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905318"},{"annotations":[116164,105808,101295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033316"},{"annotations":[109403,105809,101296,115052,90206,113279,113996,98933,116167],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007094"},{"annotations":[98195],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902103"},{"annotations":[105810,115053],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045841"},{"annotations":[93685],"is_not":false,"rel_names":["negatively_regulates","regulates","is_a"],"summary":null,"term":"GO:0140499"},{"annotations":[113280],"is_not":false,"rel_names":["positively_regulates","regulates","is_a"],"summary":null,"term":"GO:1905326"},{"annotations":[94642],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905191"},{"annotations":[116171],"is_not":false,"rel_names":["regulates","positively_regulates","is_a"],"summary":null,"term":"GO:0090267"},{"annotations":[101883,111454,97188,93287,110866,101610,113764,99635,114265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045842"},{"annotations":[100834],"is_not":false,"rel_names":["is_a","regulates"],"summary":null,"term":"GO:1905325"},{"annotations":[93686],"is_not":false,"rel_names":["is_a","regulates"],"summary":null,"term":"GO:0090266"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of metaphase/anaphase transition of cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sister chromatid segregation","termid":"GO:0033045"},{"relation_name":"is_a","term_name":"regulation of cell cycle phase transition","termid":"GO:1901987"},{"relation_name":"regulates","term_name":"metaphase/anaphase transition of cell cycle","termid":"GO:0044784"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_00666":null,"SJAG_00883":null,"SJAG_01082":null,"SJAG_01297":null,"SJAG_01330":null,"SJAG_01515":null,"SJAG_01679":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02380":null,"SJAG_02451":null,"SJAG_02498":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_03327":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04573":null,"SJAG_04699":null,"SJAG_04884":null,"SJAG_04968":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of metaphase/anaphase transition of cell cycle","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1902099","terms_by_termid":{"GO:0007094":null,"GO:0033316":null,"GO:0045841":null,"GO:0045842":null,"GO:0090266":null,"GO:0090267":null,"GO:0140499":null,"GO:1902103":null,"GO:1902426":null,"GO:1905191":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: PBO:0057718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1302-3","termid":"PBO:0057718"}


id: PBO:0042591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CMT1A duplicated region transcript 4","termid":"PBO:0042591"}


id: GO:0047041
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-carnitine + NAD+ = 3-dehydrocarnitine + H+ + NADH.","definition_xrefs":["EC:1.1.1.254","RHEA:11556"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"(S)-carnitine 3-dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R01921","MetaCyc:1.1.1.254-RXN"],"synonyms":[{"name":"(S)-carnitine:NAD+ oxidoreductase activity","type":"related"},{"name":"D-carnitine dehydrogenase activity","type":"related"}],"termid":"GO:0047041"}


id: FYPO:0004563
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alpha-galactosidase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abnormal alpha-galactosidase activity","termid":"FYPO:0004563"}


id: MONDO:0015693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete composite lymphoma (obsolete MONDO:0015693)","termid":"MONDO:0015693","xrefs":{"Monarch":{"xref_id":"0015693"}}}


id: MOD:00083
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6,N6,N6-trimethyl-L-lysine.","definition_xrefs":["PubMed:7093227","PubMed:4304194","PubMed:8453381","PubMed:6778808","PubMed:3145979","RESID:AA0074","ChEBI:17311","PubMed:12590383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"},{"relation_name":"is_a","term_name":"methylated lysine","termid":"MOD:00663"},{"relation_name":"is_a","term_name":"trimethylated protonated-residue","termid":"MOD:00711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N6,N6,N6-trimethyl-L-lysine","synonyms":[{"name":"(5S)-5-amino-5-carboxy-N,N,N-trimethylpentan-1-aminium","type":"exact"},{"name":"2-amino-6-(trimethylammonio)hexanoic acid","type":"exact"},{"name":"5-azanyl-5-carboxy-N,N,N-trimethylpentanazanium","type":"exact"},{"name":"MOD_RES N6,N6,N6-trimethyllysine","type":"exact"},{"name":"N(zeta)-trimethyllysine","type":"exact"},{"name":"N-trimethylation (of lysine)","type":"exact"},{"name":"N6,N6,N6-trimethyl-L-lysine","type":"exact"},{"name":"N6,N6,N6-trimethylated L-lysine","type":"exact"},{"name":"N6,N6,N6-trimethyllysin-N6-ium","type":"exact"},{"name":"N6,N6,N6-trimethyllysine cation","type":"exact"},{"name":"N6Me3+Lys","type":"exact"},{"name":"Trimethyl","type":"related"},{"name":"epsilon-trimethyllysine","type":"exact"},{"name":"tri-Methylation","type":"related"}],"termid":"MOD:00083"}


id: GO:0043442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of acetoacetic acid, a beta-keto acid of the keto acid group, empirical formula is C4H6O3 or CH3COCH2COOH.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"short-chain fatty acid catabolic process","termid":"GO:0019626"},{"relation_name":"is_a","term_name":"acetoacetic acid metabolic process","termid":"GO:0043438"},{"relation_name":"is_a","term_name":"ketone body catabolic process","termid":"GO:0046952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0006091","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"acetoacetic acid catabolic process","synonyms":[{"name":"acetoacetic acid breakdown","type":"exact"},{"name":"acetoacetic acid catabolism","type":"exact"},{"name":"acetoacetic acid degradation","type":"exact"}],"termid":"GO:0043442"}


id: PBO:0039383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelotin","termid":"PBO:0039383"}


id: MONDO:0003782
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of leiomyosarcoma arising from the uterine corpus. It is characterized by the presence of epithelioid round cells with eosinophilic to clear cytoplasm.","definition_xrefs":["NCIT:C40174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelioid leiomyosarcoma","termid":"MONDO:0003356"},{"relation_name":"is_a","term_name":"leiomyosarcoma of the corpus uteri","termid":"MONDO:0016262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"uterine corpus epithelioid leiomyosarcoma","secondary_identifiers":["UMLS:C1519851","DOID:6139","ONCOTREE:UELMS","MEDGEN:274363"],"synonyms":[{"name":"body of uterus epithelioid leiomyosarcoma","type":"exact"},{"name":"epithelioid leiomyosarcoma of body of uterus","type":"exact"},{"name":"uterine corpus epithelioid leiomyosarcoma","type":"exact"},{"name":"uterine epithelioid leiomyosarcoma","type":"related"}],"termid":"MONDO:0003782","xrefs":{"Monarch":{"xref_id":"0003782"}}}


id: GO:0019302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D-ribose, (ribo-pentose).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-ribose metabolic process","termid":"GO:0006014"},{"relation_name":"is_a","term_name":"pentose biosynthetic process","termid":"GO:0019322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"D-ribose biosynthetic process","synonyms":[{"name":"D-ribose anabolism","type":"exact"},{"name":"D-ribose biosynthesis","type":"exact"},{"name":"D-ribose formation","type":"exact"},{"name":"D-ribose synthesis","type":"exact"}],"termid":"GO:0019302"}


id: _global:excluded_subClassOf
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"excluded_subClassOf","termid":"_global:excluded_subClassOf","xrefs":{"Monarch":{"xref_id":"excluded_subClassOf"}}}


id: FYPO:0006840
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which LinE complex assembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein-containing complex assembly","termid":"FYPO:0006839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal LinE complex assembly","synonyms":[{"name":"normal linear element protein complex assembly","type":"exact"}],"termid":"FYPO:0006840"}


id: PBO:0067803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 105","termid":"PBO:0067803"}


id: PBO:0085716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in SRP-independent targeting of substrates to the ER; component of an alternative ER targeting pathway that has partial functional redundancy with the GET pathway; preference for substrates with downstream transmembrane domains; interacts with Env10p/Snd2p and Pho88p/Snd3p; can compensate for loss of SRP; co-purifies with ribosomes; GFP-fusion protein localizes to the cytoplasm","termid":"PBO:0085716"}


id: PBO:0024838
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae ATM1","termid":"PBO:0024838"}


id: PBO:0054533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1933","termid":"PBO:0054533"}


id: PBO:0063428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDE4DIP pseudogene 2","termid":"PBO:0063428"}


id: GO:0034635
data:
  {"annotated_genes":["SJAG_03577","SJAG_05213","SJAG_03497","SJAG_01344","SJAG_01660"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95010],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098709"},{"annotations":[112629],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160007"},{"annotations":[96541,95557,117701],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071996"},{"annotations":[95011],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034775"}]},"cv_name":"biological_process","definition":"The directed movement of glutathione, the tripeptide glutamylcysteinylglycine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"tripeptide transport","termid":"GO:0042939"},{"relation_name":"is_a","term_name":"modified amino acid transport","termid":"GO:0072337"},{"relation_name":"is_a","term_name":"sulfur compound transport","termid":"GO:0072348"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01344":null,"SJAG_01660":null,"SJAG_03497":null,"SJAG_03577":null,"SJAG_05213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"glutathione transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034635","terms_by_termid":{"GO:0034775":null,"GO:0071996":null,"GO:0098709":null,"GO:0160007":null}}


id: PBO:0075096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 145","termid":"PBO:0075096"}


id: PBO:0002081
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sh3 Homology Domain","termid":"PBO:0002081"}


id: MONDO:0022448
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete amyoplasia mandibulofacial dysostosis (obsolete MONDO:0022448)","termid":"MONDO:0022448","xrefs":{"Monarch":{"xref_id":"0022448"}}}


id: MONDO:0030015
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bone marrow failure syndrome","termid":"MONDO:0000159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"bone marrow failure syndrome 6","secondary_identifiers":["UMLS:C5394274","MEDGEN:1717739","OMIM:618849"],"synonyms":[{"name":"BMFS6","type":"exact"},{"name":"BONE MARROW FAILURE SYNDROME 6","type":"exact"},{"name":"bone marrow failure syndrome 6","type":"exact"}],"termid":"MONDO:0030015","xrefs":{"Monarch":{"xref_id":"0030015"}}}


id: PBO:0071471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 12","termid":"PBO:0071471"}


id: PBO:0083270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; 92% of ORF overlaps the uncharacterized ORF YGL068W; deletion in cyr1 mutant results in loss of stress resistance","termid":"PBO:0083270"}


id: MONDO:0021223
data:
  {"annotated_genes":["SJAG_02261","SJAG_01837","SJAG_04699","SJAG_03920","SJAG_01082","SJAG_00980","SJAG_02748","SJAG_02226","SJAG_01620","SJAG_00260","SJAG_02187","SJAG_02426","SJAG_04206","SJAG_03453","SJAG_04394","SJAG_02231","SJAG_02049"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85973,86818,85968,85967,85970,85966,85969,85972,85971],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0005575"},{"annotations":[86535,86534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0001056"},{"annotations":[86294,86295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011719"},{"annotations":[86128],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007256"},{"annotations":[85858],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007356"},{"annotations":[84679],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012249"},{"annotations":[85129],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013699"},{"annotations":[85131],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013710"},{"annotations":[85142,85141],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008018"}]},"cv_name":"mondo","definition":"A neoplasm (disease) that involves the digestive system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_00980":null,"SJAG_01082":null,"SJAG_01620":null,"SJAG_01837":null,"SJAG_02049":null,"SJAG_02187":null,"SJAG_02226":null,"SJAG_02231":null,"SJAG_02261":null,"SJAG_02426":null,"SJAG_02748":null,"SJAG_03453":null,"SJAG_03920":null,"SJAG_04206":null,"SJAG_04394":null,"SJAG_04699":null},"genotype_count":0,"is_obsolete":false,"name":"digestive system neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:4846","MESH:D005770","UMLS:C0017185","NCIT:C3052","EFO:0008549"],"synonyms":[{"name":"GI neoplasm","type":"exact"},{"name":"GI system neoplasm","type":"exact"},{"name":"GI system tumor","type":"exact"},{"name":"GI system tumour","type":"exact"},{"name":"GI tumor","type":"exact"},{"name":"GI tumour","type":"exact"},{"name":"digestive neoplasm","type":"exact"},{"name":"digestive system neoplasm (disease)","type":"exact"},{"name":"digestive system tumor","type":"exact"},{"name":"digestive system tumour","type":"exact"},{"name":"digestive tumor","type":"exact"},{"name":"digestive tumour","type":"exact"},{"name":"gastrointestinal neoplasm","type":"exact"},{"name":"gastrointestinal system neoplasm","type":"exact"},{"name":"gastrointestinal system tumor","type":"exact"},{"name":"gastrointestinal system tumour","type":"exact"},{"name":"gastrointestinal tumor","type":"exact"},{"name":"gastrointestinal tumour","type":"exact"},{"name":"neoplasm of GI system","type":"exact"},{"name":"neoplasm of digestive system","type":"exact"},{"name":"neoplasm of gastrointestinal system","type":"exact"},{"name":"neoplasm of the GI system","type":"exact"},{"name":"neoplasm of the digestive system","type":"exact"},{"name":"neoplasm of the gastrointestinal system","type":"exact"},{"name":"tumor of GI system","type":"exact"},{"name":"tumor of digestive system","type":"exact"},{"name":"tumor of gastrointestinal system","type":"exact"},{"name":"tumor of the GI system","type":"exact"},{"name":"tumor of the digestive system","type":"exact"},{"name":"tumor of the gastrointestinal system","type":"exact"},{"name":"tumour of GI system","type":"exact"},{"name":"tumour of digestive system","type":"exact"},{"name":"tumour of gastrointestinal system","type":"exact"},{"name":"tumour of the GI system","type":"exact"},{"name":"tumour of the digestive system","type":"exact"},{"name":"tumour of the gastrointestinal system","type":"exact"}],"termid":"MONDO:0021223","terms_by_termid":{"MONDO:0001056":null,"MONDO:0005575":null,"MONDO:0007256":null,"MONDO:0007356":null,"MONDO:0008018":null,"MONDO:0011719":null,"MONDO:0012249":null,"MONDO:0013699":null,"MONDO:0013710":null},"xrefs":{"Monarch":{"xref_id":"0021223"}}}


id: FYPO:0004743
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere outer repeat regions is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K9 methylation at centromere outer repeat during vegetative growth","termid":"FYPO:0003235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"normal histone H3-K9 dimethylation at centromere otr during vegetative growth","type":"exact"},{"name":"normal histone H3-K9 dimethylation at centromere outer repeat region during mitotic cell cycle","type":"related"},{"name":"normal histone H3-K9 dimethylation at centromere outer repeat region during vegetative growth","type":"exact"},{"name":"normal histone H3-K9 dimethylation at pericentric region during vegetative growth","type":"related"},{"name":"normal histone H3-K9 dimethylation at pericentromeric region during vegetative growth","type":"related"},{"name":"normal histone H3K9me2 at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0004743"}


id: GO:1902193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 2-methylbut-2-enoyl-CoA(4-).","definition_xrefs":["GOC:TermGenie","PMID:15574432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty-acyl-CoA catabolic process","termid":"GO:0036115"},{"relation_name":"is_a","term_name":"2-methylbut-2-enoyl-CoA(4-) metabolic process","termid":"GO:1902192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0006790","GO:0006629","GO:0008150","GO:0044248","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"2-methylbut-2-enoyl-CoA(4-) catabolic process","synonyms":[{"name":"2-methylbut-2-enoyl-CoA(4-) breakdown","type":"exact"},{"name":"2-methylbut-2-enoyl-CoA(4-) catabolism","type":"exact"},{"name":"2-methylbut-2-enoyl-CoA(4-) degradation","type":"exact"}],"termid":"GO:1902193"}


id: GO:1990882
data:
  {"annotated_genes":["SJAG_01877"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92095],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904812"}]},"cv_name":"biological_process","definition":"The modification of rRNA structure by addition of an acetyl group to rRNA. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.","definition_xrefs":["PMID:25402480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA modification","termid":"GO:0000154"},{"relation_name":"is_a","term_name":"RNA acetylation","termid":"GO:1990884"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01877":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0010467","GO:0042254"],"is_obsolete":false,"name":"rRNA acetylation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990882","terms_by_termid":{"GO:1904812":null}}


id: GO:0000979
data:
  {"annotated_genes":["SJAG_00698","SJAG_00421","SJAG_02458","SJAG_00741"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88761,93633,95067,111377],"is_not":false,"summary":null,"term":"GO:0000979"}]},"cv_name":"molecular_function","definition":"Binding to a DNA sequence that is part of the core promoter of a RNA polymerase II-transcribed gene.","definition_xrefs":["GOC:txnOH","PMID:12381658","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulatory region sequence-specific DNA binding","termid":"GO:0000977"},{"relation_name":"is_a","term_name":"core promoter sequence-specific DNA binding","termid":"GO:0001046"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00421":null,"SJAG_00698":null,"SJAG_00741":null,"SJAG_02458":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003674","GO:0003677","GO:0000976","GO:0005488"],"is_obsolete":false,"name":"RNA polymerase II core promoter sequence-specific DNA binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000979","terms_by_termid":{"GO:0000979":null}}


id: GO:0050307
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sucrose 6F-phosphate + H2O = sucrose + phosphate.","definition_xrefs":["EC:3.1.3.24","MetaCyc:SUCROSE-PHOSPHATASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sugar-phosphatase activity","termid":"GO:0050308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"sucrose-phosphate phosphatase activity","secondary_identifiers":["KEGG_REACTION:R00805","KEGG_REACTION:R06211","RHEA:19289"],"synonyms":[{"name":"sucrose-6F-phosphate phosphohydrolase activity","type":"exact"},{"name":"sucrose-phosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0050307"}


id: PBO:0108776
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"named from budding yeast ortholog","termid":"PBO:0108776"}


id: FYPO:0006711
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, does not occur during a cellular response to a pH above 7.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein phosphorylation during vegetative growth","termid":"FYPO:0002033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0002494","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"abolished protein phosphorylation during cellular response to alkaline pH","synonyms":[{"name":"abolished protein phosphorylation during cellular response to alkaline pH during mitotic cell cycle","type":"related"},{"name":"abolished protein phosphorylation during cellular response to alkaline pH during vegetative growth","type":"exact"},{"name":"abolished protein phosphorylation during cellular response to high pH","type":"exact"},{"name":"abolished protein phosphorylation in high pH","type":"related"},{"name":"protein phosphorylation abolished during cellular response to alkaline pH","type":"exact"}],"termid":"FYPO:0006711"}


id: PBO:0054215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1595","termid":"PBO:0054215"}


id: GO:0047060
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-pantolactone + A = 2-dehydropantolactone + AH(2).","definition_xrefs":["RHEA:21004","EC:1.1.99.27"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"(R)-pantolactone dehydrogenase (flavin) activity","secondary_identifiers":["MetaCyc:1.1.99.27-RXN","KEGG_REACTION:R03156"],"synonyms":[{"name":"(R)-pantolactone:acceptor oxidoreductase (flavin-containing)","type":"related"},{"name":"(R)-pantoyllactone dehydrogenase (flavin) activity","type":"related"},{"name":"2-dehydropantolactone reductase (flavin) activity","type":"related"},{"name":"2-dehydropantoyl-lactone reductase (flavin) activity","type":"related"}],"termid":"GO:0047060"}


id: MONDO:0016667
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete sickle cell disease associated with an other hemoglobin anomaly (obsolete MONDO:0016667)","secondary_identifiers":["Orphanet:251355"],"synonyms":[{"name":"Double heterozygotes sickling disorder","type":"exact"}],"termid":"MONDO:0016667","xrefs":{"Monarch":{"xref_id":"0016667"}}}


id: GO:1904952
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a hydroxycinnamic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:TermGenie","GO_REF:0000065","PMID:26744218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid transport","termid":"GO:0046942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"hydroxycinnamic acid transport","termid":"GO:1904952"}


id: PR:O94586
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hnt1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94586"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hit family protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1442.14c","synonyms":[{"name":"Spom972h-hnt1","type":"exact"},{"name":"adenosine 5'-monophosphoramidase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94586"}


id: MONDO:0003061
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign mesenchymal neoplasm arising from smooth, skeletal, or cardiac muscle tissue.","definition_xrefs":["NCIT:C4882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system benign neoplasm","termid":"MONDO:0000636"},{"relation_name":"is_a","term_name":"myomatous neoplasm","termid":"MONDO:0021545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign muscle neoplasm","secondary_identifiers":["DOID:461","MESH:D009214","UMLS:C0027086","ICDO:8895/0","MEDGEN:10236","DOID:2691","MONDO:0002393"],"synonyms":[{"name":"benign muscle neoplasm","type":"exact"},{"name":"benign muscle tumor","type":"exact"},{"name":"benign muscle tumour","type":"exact"},{"name":"benign neoplasm of muscle","type":"exact"},{"name":"benign neoplasm of the muscle","type":"exact"},{"name":"benign tumor of muscle","type":"exact"},{"name":"benign tumor of the muscle","type":"exact"},{"name":"benign tumour of muscle","type":"exact"},{"name":"benign tumour of the muscle","type":"exact"},{"name":"muscle benign neoplasm","type":"related"},{"name":"muscle neoplasm","type":"broad"},{"name":"muscle tissue neoplasm","type":"exact"},{"name":"myoma","type":"exact"},{"name":"myomatous tumor","type":"broad"},{"name":"myomatous tumour","type":"broad"}],"termid":"MONDO:0003061","xrefs":{"Monarch":{"xref_id":"0003061"}}}


id: GO:0072400
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about DNA integrity is received and converted into a molecular signal, contributing to a mitotic DNA integrity checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of stimulus involved in mitotic DNA integrity checkpoint (obsolete GO:0072400)","synonyms":[{"name":"DNA integrity checkpoint sensor mechanism","type":"related"},{"name":"DNA integrity checkpoint sensor process","type":"related"},{"name":"detection of stimulus involved in mitotic G2/M transition decatenation checkpoint","type":"related"},{"name":"mitotic G2/M transition decatenation checkpoint sensor mechanism","type":"related"},{"name":"mitotic G2/M transition decatenation checkpoint sensor process","type":"related"},{"name":"sensing involved in DNA integrity checkpoint","type":"related"},{"name":"sensing involved in mitotic G2/M transition decatenation checkpoint","type":"related"}],"termid":"GO:0072400"}


id: FYPO:0000270
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[118608,118596],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000271"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to osmotic stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to stress during vegetative growth","termid":"FYPO:0000304"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null},"genotype_count":2,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to osmotic stress","references_by_uniquename":{"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_02592","SJAG_00266"],"single_locus_genotype_uniquenames":["atf1delta","sty1delta"],"synonyms":[{"name":"hypersensitive to osmotic stress","type":"exact"},{"name":"osmotic stress resistance: decreased","type":"related"},{"name":"sensitive to osmotic stress during mitotic cell cycle","type":"related"},{"name":"sensitive to osmotic stress during vegetative growth","type":"exact"}],"termid":"FYPO:0000270","terms_by_termid":{"FYECO:0000207":null,"FYPO:0000271":null,"FYPO_EXT:0000001":null}}


id: GO:0097680
data:
  {"annotated_genes":["SJAG_02527","SJAG_04199"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113385,115823],"is_not":false,"summary":null,"term":"GO:0097680"}]},"cv_name":"biological_process","definition":"An instance of double-strand break repair via nonhomologous end joining that requires a number of factors important for V(D)J recombination, including the KU70/80 heterodimer (KU), XRCC4, ligase IV, and DNA-PKcs in mammals. It does not produce translocations (as opposed to the alternative nonhomologous end joining).","definition_xrefs":["PMID:18584027","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"double-strand break repair via nonhomologous end joining","termid":"GO:0006303"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02527":null,"SJAG_04199":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006281","GO:0006259"],"is_obsolete":false,"name":"double-strand break repair via classical nonhomologous end joining","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"C-NHEJ","type":"related"},{"name":"canonical nonhomologous end joining","type":"exact"}],"termid":"GO:0097680","terms_by_termid":{"GO:0097680":null}}


id: PBO:0041546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 18 putative open reading frame 15","termid":"PBO:0041546"}


id: GO:0015533
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: shikimate(out) + H+(out) = shikimate(in) + H+(in).","definition_xrefs":["TC:2.A.1.6.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"secondary active monocarboxylate transmembrane transporter activity","termid":"GO:0015355"},{"relation_name":"is_a","term_name":"shikimate transmembrane transporter activity","termid":"GO:0015530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"shikimate:proton symporter activity","synonyms":[{"name":"shikimate:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015533"}


id: SO:0000988
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A quality of a nucleotide polymer that has no terminal nucleotide residues.","definition_xrefs":["SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"topology_attribute","termid":"SO:0000986"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circular","synonyms":[{"name":"zero-ended","type":"related"}],"termid":"SO:0000988"}


id: GO:0007288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly and organization of the sperm flagellar axoneme, the bundle of microtubules and associated proteins that forms the core of the eukaryotic sperm flagellum, and is responsible for movement.","definition_xrefs":["ISBN:0198547684","GOC:bf","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"axoneme assembly","termid":"GO:0035082"},{"relation_name":"part_of","term_name":"sperm flagellum assembly","termid":"GO:0120316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0000226","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"sperm axoneme assembly","termid":"GO:0007288"}


id: PBO:0051908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITGAL antisense RNA 1","termid":"PBO:0051908"}


id: FYPO:0004805
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cell wall organization is abnormal. Cell wall organization results in the assembly, arrangement of constituent parts, or disassembly of the fungal-type cell wall.","definition_xrefs":["PomBase:mah","GO:0031505"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component organization","termid":"FYPO:0000335"}],"gene_count":0,"genotype_count":0,"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal cell wall organization","synonyms":[{"name":"abnormal cell wall organisation","type":"related"},{"name":"abnormal fungal-type cell wall organization","type":"exact"}],"termid":"FYPO:0004805"}


id: PBO:0050426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein H3","termid":"PBO:0050426"}


id: SO:0000899
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a nuclear pseudogene of a mitochndrial gene.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000899 nuclear_mitochondrial (obsolete SO:0000899)","synonyms":[{"name":"nuclear mitochondrial","type":"exact"}],"termid":"SO:0000899"}


id: PBO:0050377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A3 pseudogene 1","termid":"PBO:0050377"}


id: GO:0080085
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex consisting of a protein and RNA component which binds the signal sequence of some proteins and facilitates their export to the chloroplast.","definition_xrefs":["PMID:17513500"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal recognition particle","termid":"GO:0048500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"signal recognition particle, chloroplast targeting","termid":"GO:0080085"}


id: GO:0039659
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of the host TBK1-IKBKE-DDX3 complex.","definition_xrefs":["VZ:719"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host TBK1-IKBKE-DDX3 complex activity (obsolete GO:0039659)","synonyms":[{"name":"inhibition of host TBK1-IKBKE-DDX3 complex by virus","type":"exact"},{"name":"suppression by virus of host TBK1-IKKE-DDX3 complex activity","type":"exact"}],"termid":"GO:0039659"}


id: GO:2000156
data:
  {"annotated_genes":["SJAG_02419"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113118],"is_not":false,"summary":null,"term":"GO:2000156"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of retrograde vesicle-mediated transport, Golgi to ER.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vesicle-mediated transport","termid":"GO:0060627"},{"relation_name":"regulates","term_name":"retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum","termid":"GO:0006890"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02419":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"regulation of retrograde vesicle-mediated transport, Golgi to ER","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of cis-Golgi to rough ER transport","type":"exact"},{"name":"regulation of cis-Golgi to rough ER vesicle-mediated transport","type":"exact"},{"name":"regulation of cis-Golgi to rough endoplasmic reticulum transport","type":"exact"},{"name":"regulation of cis-Golgi to rough endoplasmic reticulum vesicle-mediated transport","type":"exact"},{"name":"regulation of retrograde (Golgi to ER) transport","type":"exact"},{"name":"regulation of retrograde transport, Golgi to ER","type":"exact"},{"name":"regulation of retrograde transport, Golgi to endoplasmic reticulum","type":"exact"},{"name":"regulation of retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum","type":"related"}],"termid":"GO:2000156","terms_by_termid":{"GO:2000156":null}}


id: PBO:0030180
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_growth","termid":"PBO:0030180"}


id: MONDO:0018296
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete congenital disorder of glycosylation with developmental anomaly (obsolete MONDO:0018296)","secondary_identifiers":["Orphanet:371235"],"synonyms":[{"name":"CDG with developmental anomaly","type":"exact"}],"termid":"MONDO:0018296","xrefs":{"Monarch":{"xref_id":"0018296"}}}


id: PBO:0085209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Oxidoreductase of the mitochondrial inner membrane; involved in cytoplasmic and mitochondrial iron homeostasis and required for activity of Fe-S cluster-containing enzymes; one of the few mitochondrial proteins essential for viability","termid":"PBO:0085209"}


id: GO:0031577
data:
  {"annotated_genes":["SJAG_04126","SJAG_03681","SJAG_04699","SJAG_01679","SJAG_04884","SJAG_02336","SJAG_02169","SJAG_00883","SJAG_01330","SJAG_04999","SJAG_01837","SJAG_02451","SJAG_03126","SJAG_03353","SJAG_04259","SJAG_03327","SJAG_01082","SJAG_01297"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113763,113275,115397,103394,106723,111451,90204,107739,99089],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[105807,113993],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905318"},{"annotations":[116164,101295,105808],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033316"},{"annotations":[101296,116167,98933,105809,115052,109403,90206,113279,113996],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007094"},{"annotations":[93685],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0140499"},{"annotations":[113280],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[116171],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0090267"},{"annotations":[100834],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"},{"annotations":[93686],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090266"}]},"cv_name":"biological_process","definition":"A signaling process that that controls a cell cycle checkpoint that originates from the mitotic or meiotic spindle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle checkpoint signaling","termid":"GO:0000075"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00883":null,"SJAG_01082":null,"SJAG_01297":null,"SJAG_01330":null,"SJAG_01679":null,"SJAG_01837":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02451":null,"SJAG_03126":null,"SJAG_03327":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04699":null,"SJAG_04884":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0007049"],"is_obsolete":false,"name":"spindle checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Spindle_checkpoint","GO:0072416"],"synonyms":[{"name":"signal transduction involved in spindle checkpoint","type":"exact"},{"name":"spindle checkpoint","type":"exact"}],"termid":"GO:0031577","terms_by_termid":{"GO:0007094":null,"GO:0033316":null,"GO:0090266":null,"GO:0090267":null,"GO:0140499":null,"GO:1902426":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: MONDO:0009078
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Jervell and Lange-Nielsen syndrome (obsolete MONDO:0009078)","synonyms":[{"name":"obsolete Jervell and Lange-Nielsen syndrome","type":"exact"}],"termid":"MONDO:0009078","xrefs":{"Monarch":{"xref_id":"0009078"}}}


id: MONDO:0023201
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fryns Smeets Thiry syndrome","secondary_identifiers":["GARD:2409","Orphanet:2058","MEDGEN:1803270","UMLS:C5680810"],"termid":"MONDO:0023201","xrefs":{"Monarch":{"xref_id":"0023201"}}}


id: GO:1904059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of locomotor rhythm.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:16310969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of circadian rhythm","termid":"GO:0042752"},{"relation_name":"is_a","term_name":"regulation of behavior","termid":"GO:0050795"},{"relation_name":"regulates","term_name":"locomotor rhythm","termid":"GO:0045475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of locomotor rhythm","synonyms":[{"name":"regulation of circadian locomotor activity rhythm","type":"narrow"}],"termid":"GO:1904059"}


id: MONDO:0000199
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete familial adenomatous polyposis (obsolete MONDO:0000199)","termid":"MONDO:0000199","xrefs":{"Monarch":{"xref_id":"0000199"}}}


id: GO:0002632
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of granuloma formation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of granuloma formation","termid":"GO:0002631"},{"relation_name":"is_a","term_name":"negative regulation of chronic inflammatory response","termid":"GO:0002677"},{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"negatively_regulates","term_name":"granuloma formation","termid":"GO:0002432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of granuloma formation","synonyms":[{"name":"down regulation of granuloma formation","type":"exact"},{"name":"down-regulation of granuloma formation","type":"exact"},{"name":"downregulation of granuloma formation","type":"exact"},{"name":"inhibition of granuloma formation","type":"narrow"}],"termid":"GO:0002632"}


id: PR:Q1MTN8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC16D10.01c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q1MTN8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assembly chaperone of rpl4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16D10.01c","synonyms":[{"name":"Spom972h-SPBC16D10.01c","type":"exact"}],"termid":"PR:Q1MTN8"}


id: GO:1904873
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of telomerase RNA localization to Cajal body.","definition_xrefs":["GOC:BHF_telomere","PMID:25467444","GOC:TermGenie","GO_REF:0000058","GOC:BHF","GOC:nc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biological process","termid":"GO:0048519"},{"relation_name":"is_a","term_name":"regulation of telomerase RNA localization to Cajal body","termid":"GO:1904872"},{"relation_name":"negatively_regulates","term_name":"telomerase RNA localization to Cajal body","termid":"GO:0090671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of telomerase RNA localization to Cajal body","synonyms":[{"name":"down regulation of telomerase RNA localization to Cajal body","type":"exact"},{"name":"down-regulation of telomerase RNA localization to Cajal body","type":"exact"},{"name":"downregulation of telomerase RNA localization to Cajal body","type":"exact"},{"name":"inhibition of telomerase RNA localization to Cajal body","type":"narrow"}],"termid":"GO:1904873"}


id: PBO:0003941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nup85","termid":"PBO:0003941"}


id: PBO:0057904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3605","termid":"PBO:0057904"}


id: PBO:0066419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication initiator 1","termid":"PBO:0066419"}


id: PBO:0071126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 128","termid":"PBO:0071126"}


id: GO:0141169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An epigenetic cytosine DNA demethylation pathway that involves a DNA glycosylase that directly excises 5-methylcytosine (5-meC) to initiate its replacement with unmethylated cytosine through base excision repair. This pathway is known to occur in plants. In addition to CG sites, plants also methylate cytosines within CHH and CNG sequences.","definition_xrefs":["PMID:36478523","PMID:31546611","PMID:21862972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal 5-methylcytosine DNA demethylation pathway","termid":"GO:0141166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"chromosomal 5-methylcytosine DNA demethylation, direct 5-methylcytosine excision pathway","synonyms":[{"name":"epigenetic 5-methylcytosine DNA demethylation, direct 5-methylcytosine excision pathway","type":"related"}],"termid":"GO:0141169"}


id: MONDO:1011110
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cryptorchidism that occurs in puma.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cryptorchidism, non-human animal","termid":"MONDO:1010275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptorchidism, puma","secondary_identifiers":["OMIA:000243-9696"],"termid":"MONDO:1011110","xrefs":{"Monarch":{"xref_id":"1011110"}}}


id: GO:0031910
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Stable, specialized structure for the ingestion of food by the cell into phagosomes.","definition_xrefs":["PMID:10503189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"cytostome","secondary_identifiers":["Wikipedia:Cytostome"],"termid":"GO:0031910"}


id: MONDO:0012710
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Hirschsprung disease, susceptibility to","termid":"MONDO:0100179"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hirschsprung disease, susceptibility to, 9","secondary_identifiers":["OMIM:611644","UMLS:C1968840","MEDGEN:369866"],"synonyms":[{"name":"HSCR9","type":"exact"},{"name":"Hirschsprung disease, susceptibility to, 9","type":"exact"}],"termid":"MONDO:0012710","xrefs":{"Monarch":{"xref_id":"0012710"}}}


id: PBO:0003728
data:
  {"annotation_feature_type":"gene","cv_name":"DNA_binding_specificity","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binds SRE 5'-[A/T]TCAC[A/C]CAT-3'","termid":"PBO:0003728"}


id: PBO:0001862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial threonine-tRNA ligase (predicted)","termid":"PBO:0001862"}


id: GO:2000320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 17 cell differentiation.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T-helper cell differentiation","termid":"GO:0045623"},{"relation_name":"is_a","term_name":"negative regulation of T-helper 17 type immune response","termid":"GO:2000317"},{"relation_name":"is_a","term_name":"regulation of T-helper 17 cell differentiation","termid":"GO:2000319"},{"relation_name":"negatively_regulates","term_name":"T-helper 17 cell differentiation","termid":"GO:0072539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"negative regulation of T-helper 17 cell differentiation","synonyms":[{"name":"negative regulation of T-helper 17 cell development","type":"related"}],"termid":"GO:2000320"}


id: MOD:01383
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-cysteine residues and oxidizes a sulfur to form L-cystine S-oxide.","definition_xrefs":["RESID:AA0457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disulfide crosslinked residues","termid":"MOD:00689"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-cystine S-oxide","synonyms":[{"name":"(2R)-2-amino-3-[([(2R)-2-amino-2-carboxyethyl]sulfanyl)sulfinyl]propanoic acid","type":"exact"},{"name":"CROSSLNK S-cysteinyl 3-(oxidosulfanyl)alanine (Cys-Cys)","type":"exact"},{"name":"L-cystine S-oxide","type":"exact"},{"name":"S-[(2R)-2-amino-3-oxopropyl] (2R)-2-amino-3-oxopropane-1-sulfinothioate","type":"exact"},{"name":"S-cysteinyl 3-(oxidosulfanyl)alanine","type":"exact"},{"name":"cystine sulfoxide","type":"exact"}],"termid":"MOD:01383"}


id: PBO:0049685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAGLR opposite strand lncRNA","termid":"PBO:0049685"}


id: PBO:0083759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential helicase component of heterohexameric MCM2-7 complexes; MCM2-7 complexes bind pre-replication complexes on DNA and melt DNA prior to replication; forms an Mcm4p-6p-7p subcomplex; shows nuclear accumulation in G1; homolog of S. pombe Cdc21p","termid":"PBO:0083759"}


id: GO:1990686
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein-lipid-RNA complex containing separate low-density lipoprotein (LDL), lipid and RNA molecules. Separate in this context means not covalently bound to each other.","definition_xrefs":["GOC:vesicles","PMID:23559634"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lipid-RNA complex","termid":"GO:1990684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"LDL-containing protein-lipid-RNA complex","termid":"GO:1990686"}


id: PBO:0070657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 28","termid":"PBO:0070657"}


id: PBO:0059342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S10 pseudogene 1","termid":"PBO:0059342"}


id: PBO:0050852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ICAM4 antisense RNA 1","termid":"PBO:0050852"}


id: PBO:0068960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 204, pseudogene","termid":"PBO:0068960"}


id: PBO:0059156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallophosphoesterase 1 pseudogene 1","termid":"PBO:0059156"}


id: GO:0071016
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A spliceosomal complex that is formed by the recruitment of the preassembled U4atac/U6atac.U5 tri-snRNP to the U12-type prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U11, U12 and U4atac/U6atac.U5 snRNPs.","definition_xrefs":["GOC:ab","GOC:krc","GOC:mah","PMID:16201866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"U12-type spliceosomal complex","termid":"GO:0005689"},{"relation_name":"is_a","term_name":"precatalytic spliceosome","termid":"GO:0071011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"U12-type precatalytic spliceosome","synonyms":[{"name":"AT-AC precatalytic spliceosome","type":"narrow"},{"name":"mammalian U12-type spliceosomal complex B","type":"narrow"},{"name":"mammalian U12-type spliceosomal complex B1","type":"narrow"},{"name":"minor precatalytic spliceosome","type":"exact"},{"name":"yeast U12-type spliceosomal complex A2-1","type":"narrow"}],"termid":"GO:0071016"}


id: PBO:0054302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1694","termid":"PBO:0054302"}


id: MONDO:0019603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteopenia-myopia-hearing loss-intellectual disability-facial dysmorphism syndrome is characterized by severe hypertelorism, brachycephaly, abnormal ears, sloping shoulders, enamel hypoplasia, osteopaenia with frequent fractures, severe myopia, mild to moderate sensorineural hearing loss and mild intellectual deficit. It has been described in two brothers born to first-cousin parents. No chromosomal anomalies were detected. Transmission appears to be autosomal recessive or X-linked.","definition_xrefs":["Orphanet:91133"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteopenia-myopia-hearing loss-intellectual disability-facial dysmorphism syndrome","secondary_identifiers":["MEDGEN:928492","UMLS:C4302823","SCTID:722111004"],"termid":"MONDO:0019603","xrefs":{"Monarch":{"xref_id":"0019603"}}}


id: PBO:0067429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 549, pseudogene","termid":"PBO:0067429"}


id: PBO:0113364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that facilitates co-transcriptional histone H2B ubiquitination; scaffold protein that promotes oligomerization of E3 ligase Bre1p; contains an intrinsically disordered region that phase separates, to form a core encapsulated by Bre1p that recruits Ub-conjugating enzyme Rad6p, elevating catalytic activity along gene bodies; null mutant forms abnormally large cells, and homozygous null mutant displays delayed premeiotic DNA synthesis and reduced efficiency of meiotic nuclear division","termid":"PBO:0113364"}


id: PBO:0079708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquilin 2","termid":"PBO:0079708"}


id: MONDO:0015968
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic hypothalamic or pituitary disease (obsolete MONDO:0015968)","secondary_identifiers":["Orphanet:183628"],"termid":"MONDO:0015968","xrefs":{"Monarch":{"xref_id":"0015968"}}}


id: GO:0016049
data:
  {"annotated_genes":["SJAG_00216","SJAG_00514","SJAG_02392","SJAG_03486","SJAG_00244","SJAG_03602","SJAG_04509","SJAG_02169","SJAG_01456","SJAG_03581","SJAG_04724","SJAG_02723","SJAG_02838","SJAG_04322","SJAG_03705","SJAG_01017"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94063,89340,95334],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0051519"},{"annotations":[93503,87366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042815"},{"annotations":[99240,106341,87530,115978,117404,110251,102990],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0051523"},{"annotations":[90207],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0051517"},{"annotations":[106143],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0030307"},{"annotations":[114545],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0051516"},{"annotations":[97933],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0061387"}]},"cv_name":"biological_process","definition":"The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"},{"relation_name":"is_a","term_name":"growth","termid":"GO:0040007"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00216":null,"SJAG_00244":null,"SJAG_00514":null,"SJAG_01017":null,"SJAG_01456":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_02723":null,"SJAG_02838":null,"SJAG_03486":null,"SJAG_03581":null,"SJAG_03602":null,"SJAG_03705":null,"SJAG_04322":null,"SJAG_04509":null,"SJAG_04724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell growth","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0048591"],"synonyms":[{"name":"cell expansion","type":"related"},{"name":"cellular growth","type":"exact"},{"name":"growth of cell","type":"exact"},{"name":"metabolic process resulting in cell growth","type":"related"},{"name":"metabolism resulting in cell growth","type":"related"},{"name":"non-developmental cell growth","type":"related"},{"name":"non-developmental growth of a unicellular organism","type":"related"}],"termid":"GO:0016049","terms_by_termid":{"GO:0030307":null,"GO:0042815":null,"GO:0051516":null,"GO:0051517":null,"GO:0051519":null,"GO:0051523":null,"GO:0061387":null}}


id: PBO:0047561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 14","termid":"PBO:0047561"}


id: MONDO:0001030
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"keratoconus","termid":"MONDO:0015486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"keratoconus, stable condition","secondary_identifiers":["SCTID:193844000","DOID:10428","UMLS:C0155131","ICD9:371.61","MEDGEN:509801"],"synonyms":[{"name":"stable condition keratoconus","type":"exact"}],"termid":"MONDO:0001030","xrefs":{"Monarch":{"xref_id":"0001030"}}}


id: MONDO:0003385
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cervical clear cell adenocarcinoma (obsolete MONDO:0003385)","termid":"MONDO:0003385","xrefs":{"Monarch":{"xref_id":"0003385"}}}


id: PBO:0005386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA_pseudo anticodon AAC","termid":"PBO:0005386"}


id: GO:0006921
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The breakdown of structures such as organelles, proteins, or other macromolecular structures during apoptosis.","definition_xrefs":["GOC:dph","GOC:mah","GOC:tb","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component disassembly","termid":"GO:0022411"},{"relation_name":"part_of","term_name":"execution phase of apoptosis","termid":"GO:0097194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular component disassembly involved in execution phase of apoptosis","synonyms":[{"name":"cellular component disassembly involved in apoptosis","type":"narrow"},{"name":"cellular component disassembly involved in apoptotic process","type":"broad"},{"name":"disassembly of cell structures","type":"broad"}],"termid":"GO:0006921"}


id: PBO:0016914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"t-UTP complex subint Utp8 (predicted)","termid":"PBO:0016914"}


id: GO:1901976
data:
  {"annotated_genes":["SJAG_03126","SJAG_03327","SJAG_01297","SJAG_03353","SJAG_02451","SJAG_01837","SJAG_04259","SJAG_02336","SJAG_01679","SJAG_02169","SJAG_00883","SJAG_03681"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111451,115397,99089,103394,113275,106723,113763,90204,107739],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902426"},{"annotations":[93685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140499"},{"annotations":[113280],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905326"},{"annotations":[116171],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090267"},{"annotations":[100834],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905325"},{"annotations":[93686],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090266"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell cycle checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie","PMID:23028116"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle phase transition","termid":"GO:1901987"},{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"cell cycle checkpoint signaling","termid":"GO:0000075"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00883":null,"SJAG_01297":null,"SJAG_01679":null,"SJAG_01837":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02451":null,"SJAG_03126":null,"SJAG_03327":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0007049"],"is_obsolete":false,"name":"regulation of cell cycle checkpoint","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:2001047"],"synonyms":[{"name":"regulation of G1/S checkpoint","type":"related"},{"name":"regulation of G1/S transition checkpoint","type":"related"}],"termid":"GO:1901976","terms_by_termid":{"GO:0090266":null,"GO:0090267":null,"GO:0140499":null,"GO:1902426":null,"GO:1905325":null,"GO:1905326":null}}


id: MONDO:0019782
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"synostosis","termid":"MONDO:0001411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"humero-ulnar synostosis","secondary_identifiers":["GARD:19244","MEDGEN:451053","UMLS:C0431799","icd11.foundation:2144695561","Orphanet:94056"],"synonyms":[{"name":"humero-ulnar fusion","type":"exact"}],"termid":"MONDO:0019782","xrefs":{"Monarch":{"xref_id":"0019782"}}}


id: PBO:0078476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyrotropin releasing hormone receptor","termid":"PBO:0078476"}


id: GO:0019298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of coenzyme B (7-mercaptoheptanoylthreonine phosphate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes.","definition_xrefs":["PMID:10940051"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coenzyme B metabolic process","termid":"GO:0019297"},{"relation_name":"is_a","term_name":"modified amino acid biosynthetic process","termid":"GO:0042398"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"coenzyme B biosynthetic process","secondary_identifiers":["MetaCyc:P241-PWY"],"synonyms":[{"name":"coenzyme B anabolism","type":"exact"},{"name":"coenzyme B biosynthesis","type":"exact"},{"name":"coenzyme B formation","type":"exact"},{"name":"coenzyme B synthesis","type":"exact"}],"termid":"GO:0019298"}


id: FYPO:0000820
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the concentration of a peptide pheromone released into the growth medium by cells is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased concentration of substance in growth medium","termid":"FYPO:0000816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001155"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001155","FYPO:0001985"],"is_obsolete":false,"name":"decreased concentration of pheromone in growth medium","synonyms":[{"name":"decreased accumulation of pheromone in growth medium","type":"related"},{"name":"decreased concentration of peptide pheromone in growth medium","type":"exact"},{"name":"decreased level of pheromone in growth medium","type":"exact"},{"name":"decreased release of pheromone into growth medium","type":"related"},{"name":"pheromone production: decreased","type":"related"},{"name":"reduced concentration of pheromone in growth medium","type":"exact"}],"termid":"FYPO:0000820"}


id: GO:1990742
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An extracellular vesicle released from the plasma membrane and ranging in size from about 100 nm to 1000 nm.","definition_xrefs":["PMID:24009894","GOC:vesicles","Wikipedia:Microvesicles","PMID:22418571"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular vesicle","termid":"GO:1903561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005576","GO:0005575"],"is_obsolete":false,"name":"microvesicle","synonyms":[{"name":"ectosome","type":"exact"},{"name":"extracellular microvesicle","type":"exact"},{"name":"shedding vesicle","type":"broad"}],"termid":"GO:1990742"}


id: PBO:0063674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piggyBac transposable element derived 3 pseudogene 3","termid":"PBO:0063674"}


id: PBO:0045389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidyl peptidase like 10","termid":"PBO:0045389"}


id: GO:0140536
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A transcription corepressor activity that represses or decreases the transcription of specific gene sets via binding to a DNA-bound nuclear receptor, either on its own or as part of a complex. Nuclear receptor corepressors often act by altering chromatin structure and modifications. For example, one class of transcription nuclear receptor corepressors modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators.","definition_xrefs":["PMID:7566126","PMID:9238851","PMID:7566114"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear receptor corepressor activity (obsolete GO:0140536)","synonyms":[{"name":"nuclear corepressor activity","type":"broad"}],"termid":"GO:0140536"}


id: PBO:0080376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS8 subunit of CORVET complex","termid":"PBO:0080376"}


id: GO:0022412
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular organism.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"},{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular process involved in reproduction in multicellular organism","synonyms":[{"name":"reproductive cellular process in multicellular organism","type":"exact"}],"termid":"GO:0022412"}


id: GO:0102713
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: gibberellin A25 + 2-oxoglutarate(2-) + O2 = gibberellin A46 + succinate(2-) + carbon dioxide.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete gibberellin A25 hydroxylase activity (obsolete GO:0102713)","termid":"GO:0102713"}


id: GO:0006113
data:
  {"annotated_genes":["SJAG_03370","SJAG_03743","SJAG_05006","SJAG_03822","SJAG_01414","SJAG_04495","SJAG_00240"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97489],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019660"},{"annotations":[98229,114110,98228,87981,114111],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019655"},{"annotations":[96064],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:2001172"}]},"cv_name":"biological_process","definition":"The anaerobic enzymatic conversion of organic compounds, especially carbohydrates, coupling the oxidation and reduction of NAD/H and the generation of adenosine triphosphate (ATP).","definition_xrefs":["GOC:curators","ISBN:0201090910","MetaCyc:Fermentation"],"direct_ancestors":[{"relation_name":"is_a","term_name":"energy derivation by oxidation of organic compounds","termid":"GO:0015980"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00240":null,"SJAG_01414":null,"SJAG_03370":null,"SJAG_03743":null,"SJAG_03822":null,"SJAG_04495":null,"SJAG_05006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"fermentation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Fermentation_(biochemistry)"],"termid":"GO:0006113","terms_by_termid":{"GO:0019655":null,"GO:0019660":null,"GO:2001172":null}}


id: PBO:0030249
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_trehalose_level","termid":"PBO:0030249"}


id: GO:1904667
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin protein ligase activity.","definition_xrefs":["GOC:dph","GOC:tb","PMID:26216882","GO_REF:0000059","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of ubiquitin-protein transferase activity","termid":"GO:0051444"},{"relation_name":"is_a","term_name":"regulation of ubiquitin protein ligase activity","termid":"GO:1904666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0070647"},{"rel_name":"regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"negative regulation of ubiquitin protein ligase activity","secondary_identifiers":["GO:1904190","GO:0060564"],"synonyms":[{"name":"down regulation of E3","type":"related"},{"name":"down regulation of protein ubiquitination activity","type":"exact"},{"name":"down regulation of ubiquitin ligase activity","type":"exact"},{"name":"down regulation of ubiquitin protein ligase activity","type":"exact"},{"name":"down-regulation of E3","type":"related"},{"name":"down-regulation of protein ubiquitination activity","type":"exact"},{"name":"down-regulation of ubiquitin ligase activity","type":"exact"},{"name":"down-regulation of ubiquitin protein ligase activity","type":"exact"},{"name":"downregulation of E3","type":"related"},{"name":"downregulation of protein ubiquitination activity","type":"exact"},{"name":"downregulation of ubiquitin ligase activity","type":"exact"},{"name":"downregulation of ubiquitin protein ligase activity","type":"exact"},{"name":"inhibition of E3","type":"related"},{"name":"inhibition of protein ubiquitination activity","type":"narrow"},{"name":"inhibition of ubiquitin ligase activity","type":"narrow"},{"name":"inhibition of ubiquitin protein ligase activity","type":"narrow"},{"name":"negative regulation of APC activity during mitotic cell cycle","type":"related"},{"name":"negative regulation of APC-Cdc20 complex activity","type":"narrow"},{"name":"negative regulation of APC-fizzy related complex activity","type":"narrow"},{"name":"negative regulation of APC/C activity during mitotic cell cycle","type":"related"},{"name":"negative regulation of E3","type":"related"},{"name":"negative regulation of anaphase-promoting complex activity during mitotic cell cycle","type":"related"},{"name":"negative regulation of cyclosome activity during mitotic cell cycle","type":"related"},{"name":"negative regulation of mitotic anaphase-promoting complex activity","type":"related"},{"name":"negative regulation of protein ubiquitination activity","type":"exact"},{"name":"negative regulation of ubiquitin ligase activity","type":"exact"}],"termid":"GO:1904667"}


id: GO:0005562
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA (obsolete GO:0005562)","synonyms":[{"name":"RNA","type":"exact"}],"termid":"GO:0005562"}


id: GO:0150115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cell-substrate junction. A cell-substrate junction is a specialized region of connection between a cell and the extracellular matrix.","definition_xrefs":["PMID:1643657","PMID:16805308","GOC:aruk","PMID:8314002","PMID:26923917","GOC:bc","PMID:10419689"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell junction organization","termid":"GO:0034330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell-substrate junction organization","termid":"GO:0150115"}


id: GO:0052664
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a primary nitroalkane + H2O + O2 = an aldehyde + H+ + H2O2 + nitrite; also converts secondary nitroalkanes to a ketone.","definition_xrefs":["EC:1.7.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on other nitrogenous compounds as donors, oxygen as acceptor","termid":"GO:0016663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"nitroalkane oxidase activity","synonyms":[{"name":"NAO activity","type":"related"},{"name":"nitroalkane reductase activity","type":"related"},{"name":"nitroalkane:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0052664"}


id: GO:2000234
data:
  {"annotated_genes":["SJAG_01764","SJAG_04890"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91530,95707],"is_not":false,"summary":null,"term":"GO:2000234"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of rRNA processing.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of RNA metabolic process","termid":"GO:0051254"},{"relation_name":"is_a","term_name":"regulation of rRNA processing","termid":"GO:2000232"},{"relation_name":"positively_regulates","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01764":null,"SJAG_04890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of rRNA processing","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of 35S primary transcript processing","type":"related"}],"termid":"GO:2000234","terms_by_termid":{"GO:2000234":null}}


id: PBO:0072691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RUNX family transcription factor 2","termid":"PBO:0072691"}


id: GO:0010875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of cholesterol efflux. Cholesterol efflux is the directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cholesterol efflux","termid":"GO:0010874"},{"relation_name":"is_a","term_name":"positive regulation of cholesterol transport","termid":"GO:0032376"},{"relation_name":"positively_regulates","term_name":"cholesterol efflux","termid":"GO:0033344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of cholesterol efflux","termid":"GO:0010875"}


id: PBO:0042314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD28 molecule","termid":"PBO:0042314"}


id: MONDO:0015847
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare vaginal malformation (obsolete MONDO:0015847)","secondary_identifiers":["Orphanet:180151"],"termid":"MONDO:0015847","xrefs":{"Monarch":{"xref_id":"0015847"}}}


id: FYPO:0007440
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the directed movement of sterols within cells is abnormal.","definition_xrefs":["GO:0032366","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abnormal intracellular sterol transport","synonyms":[{"name":"abnormal intracellular sterol transport during mitotic cell cycle","type":"related"},{"name":"abnormal intracellular sterol transport during vegetative growth","type":"exact"}],"termid":"FYPO:0007440"}


id: GO:0071788
data:
  {"annotated_genes":["SJAG_03812"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64195],"is_not":false,"summary":null,"term":"GO:0071788"}]},"cv_name":"biological_process","definition":"The organization process that preserves the endoplasmic reticulum (ER) tubular network in a stable functional or structural state. The ER tubular network is the ER part that comprises the membranes with high curvature in cross-section.","definition_xrefs":["PMID:16469703","GOC:mah","PMID:20434336"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component maintenance","termid":"GO:0043954"},{"relation_name":"is_a","term_name":"endoplasmic reticulum tubular network organization","termid":"GO:0071786"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03812":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum tubular network maintenance","references_by_uniquename":{"GO_REF:0000104":null},"synonyms":[{"name":"ER tubular network maintenance","type":"exact"}],"termid":"GO:0071788","terms_by_termid":{"GO:0071788":null}}


id: GO:0000764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The change in form (cell shape and size) that contributes to sexual reproduction in order to facilitate direct contact between the compatible mating types in organisms that undergo pheromone-induced unidirectional conjugation.","definition_xrefs":["GOC:clt"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular morphogenesis involved in pheromone-induced unidirectional conjugation (obsolete GO:0000764)","synonyms":[{"name":"cellular morphogenesis during pheromone-induced unidirectional","type":"related"},{"name":"cellular morphogenesis involved in pheromone-induced unidirectional conjugation","type":"exact"}],"termid":"GO:0000764"}


id: MONDO:0016406
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete other metabolic disease with epilepsy (obsolete MONDO:0016406)","secondary_identifiers":["Orphanet:225713"],"termid":"MONDO:0016406","xrefs":{"Monarch":{"xref_id":"0016406"}}}


id: GO:0006965
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of biosynthesis of antibacterial peptides active against Gram-positive bacteria.","definition_xrefs":["PMID:10973475","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria","termid":"GO:0002816"},{"relation_name":"is_a","term_name":"positive regulation of antibacterial peptide biosynthetic process","termid":"GO:0006963"},{"relation_name":"positively_regulates","term_name":"biosynthetic process of antibacterial peptides active against Gram-positive bacteria","termid":"GO:0002815"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria","synonyms":[{"name":"activation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria","type":"narrow"},{"name":"anti-Gram-positive bacterial peptide induction","type":"exact"},{"name":"anti-Gram-positive bacterial polypeptide induction","type":"exact"},{"name":"stimulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria","type":"narrow"},{"name":"up regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria","type":"exact"},{"name":"up-regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria","type":"exact"},{"name":"upregulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria","type":"exact"}],"termid":"GO:0006965"}


id: GO:0006859
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed extracellular movement of carbohydrates.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete extracellular carbohydrate transport (obsolete GO:0006859)","termid":"GO:0006859"}


id: GO:0099175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the physical form of a postsynapse.","definition_xrefs":["GOC:dph","GOC:ai","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synapse organization","termid":"GO:0050807"},{"relation_name":"regulates","term_name":"postsynapse organization","termid":"GO:0099173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of postsynapse organization","synonyms":[{"name":"regulation of postsynapse organisation","type":"exact"},{"name":"regulation of postsynapse organization and biogenesis","type":"related"},{"name":"regulation of postsynapse structure","type":"exact"}],"termid":"GO:0099175"}


id: MONDO:1011335
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Musculoskeletal system disorder that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-human animal disease","termid":"MONDO:0005583"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335","xrefs":{"Monarch":{"xref_id":"1011335"}}}


id: GO:0000836
data:
  {"annotated_genes":["SJAG_03841","SJAG_01051","SJAG_03345","SJAG_04384","SJAG_01134","SJAG_05274","SJAG_01709"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[88731,103469,104311,104789,107161,109057,116650],"is_not":false,"summary":null,"term":"GO:0000836"}]},"cv_name":"cellular_component","definition":"A multiprotein complex that recognizes and ubiquitinates proteins with misfolded luminal and membrane domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p. In mammals, this complex contains the ubiquitin ligase HRD1 (Synoviolin) or AMFR (gp78).","definition_xrefs":["PMID:16873066","PMID:21454652","GOC:bf","GOC:elh","PMID:16619026"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ER ubiquitin ligase complex","termid":"GO:0000835"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01051":null,"SJAG_01134":null,"SJAG_01709":null,"SJAG_03345":null,"SJAG_03841":null,"SJAG_04384":null,"SJAG_05274":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005789"}],"interesting_parent_ids":["GO:0005783","GO:0032991","GO:0005737","GO:0005789","GO:0005575"],"is_obsolete":false,"name":"Hrd1p ubiquitin ligase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"HRD1 ubiquitin ligase complex","type":"related"}],"termid":"GO:0000836","terms_by_termid":{"GO:0000836":null}}


id: GO:0000792
data:
  {"annotated_genes":["SJAG_03635","SJAG_03664","SJAG_03789","SJAG_00934","SJAG_01332","SJAG_01601","SJAG_01495","SJAG_02409","SJAG_04670","SJAG_03449","SJAG_04412","SJAG_04030","SJAG_02778","SJAG_02866","SJAG_02622","SJAG_03945","SJAG_01867","SJAG_03680","SJAG_01540","SJAG_03942","SJAG_03627","SJAG_02382","SJAG_04396","SJAG_04039","SJAG_02697","SJAG_03685","SJAG_04252","SJAG_03689","SJAG_02348","SJAG_02846","SJAG_00618","SJAG_01046","SJAG_01067","SJAG_04062","SJAG_02698","SJAG_03926","SJAG_00414","SJAG_03346","SJAG_02082","SJAG_01579","SJAG_04142","SJAG_03982","SJAG_00335","SJAG_03543","SJAG_00756","SJAG_04257","SJAG_02773","SJAG_01581","SJAG_00678","SJAG_03989","SJAG_04141","SJAG_00471","SJAG_03356","SJAG_00302","SJAG_03745","SJAG_00796","SJAG_01708","SJAG_03418","SJAG_00698","SJAG_04768","SJAG_01056","SJAG_02401","SJAG_04508","SJAG_04855","SJAG_03042","SJAG_03916","SJAG_00961","SJAG_04574","SJAG_00768","SJAG_01075","SJAG_02119","SJAG_04186","SJAG_03221","SJAG_01745","SJAG_03997","SJAG_00266","SJAG_04623","SJAG_03350","SJAG_02990","SJAG_02621","SJAG_04253","SJAG_03780","SJAG_03844","SJAG_01873","SJAG_02927","SJAG_05372","SJAG_05329"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[88258,88547,92677,94087,95690,96704,98615,98999,100994,101486,101487,101488,103611,104868,107455,109707,111369,112079,112080,112081,113772,114035,114068,116020,116676,117248,118853],"is_not":false,"summary":null,"term":"GO:0000792"},{"annotations":[118858],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990343"},{"annotations":[86964,91342,92920,90269,90748,111588,116353,98616,91720,95722,117583,117604,118307,112778,117249],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990342"},{"annotations":[93557,103682,87338,90749,109785,109971,118050,90399,111589,118308,95641,113475,117584,111695,107641,93308,117250,117192,117202,99056,112546,89520,98617,112082,91551,112083,113909,87401,96475,101490,102720,96214,101491,116614,101489,91268,103587,107143,112084,112779],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031934"},{"annotations":[91271,90822,96216,106817,113164,89523,98619,112719,101333,88836,115478,102722,117252,101499,105791,87117,112094,99059,112095,117585,93310,107307,103589,91860,118188,110699,117194,113477,106031,95643,113775,102276,101498,113911,114063,93559,90402,90891,93575,99107,112781,112096,116616,101500,90751,117205,91552,118052,107643,103685,111592,98461,116357,118310,111697,112548,87341,109973],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005721"},{"annotations":[103686,112002,110707,107644,90823,116022,111593,91346,101776,118311,113478,116358,105792,91272,91553,113912,117206,89524,112782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033553"},{"annotations":[90752,117586,111698],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030958"},{"annotations":[90753,96217,116617,101502,101503,111699,113479,95644,103590,99060,112099,103688,98620,90403,91555,112097,118312,117587,101501,109974,93311,111595,117253,102723,93560,112098,112784,115438,117195],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140720"}]},"cv_name":"cellular_component","definition":"A compact and highly condensed form of chromatin that is refractory to transcription.","definition_xrefs":["PMID:32017156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin","termid":"GO:0000785"}],"gene_count":87,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_00302":null,"SJAG_00335":null,"SJAG_00414":null,"SJAG_00471":null,"SJAG_00618":null,"SJAG_00678":null,"SJAG_00698":null,"SJAG_00756":null,"SJAG_00768":null,"SJAG_00796":null,"SJAG_00934":null,"SJAG_00961":null,"SJAG_01046":null,"SJAG_01056":null,"SJAG_01067":null,"SJAG_01075":null,"SJAG_01332":null,"SJAG_01495":null,"SJAG_01540":null,"SJAG_01579":null,"SJAG_01581":null,"SJAG_01601":null,"SJAG_01708":null,"SJAG_01745":null,"SJAG_01867":null,"SJAG_01873":null,"SJAG_02082":null,"SJAG_02119":null,"SJAG_02348":null,"SJAG_02382":null,"SJAG_02401":null,"SJAG_02409":null,"SJAG_02621":null,"SJAG_02622":null,"SJAG_02697":null,"SJAG_02698":null,"SJAG_02773":null,"SJAG_02778":null,"SJAG_02846":null,"SJAG_02866":null,"SJAG_02927":null,"SJAG_02990":null,"SJAG_03042":null,"SJAG_03221":null,"SJAG_03346":null,"SJAG_03350":null,"SJAG_03356":null,"SJAG_03418":null,"SJAG_03449":null,"SJAG_03543":null,"SJAG_03627":null,"SJAG_03635":null,"SJAG_03664":null,"SJAG_03680":null,"SJAG_03685":null,"SJAG_03689":null,"SJAG_03745":null,"SJAG_03780":null,"SJAG_03789":null,"SJAG_03844":null,"SJAG_03916":null,"SJAG_03926":null,"SJAG_03942":null,"SJAG_03945":null,"SJAG_03982":null,"SJAG_03989":null,"SJAG_03997":null,"SJAG_04030":null,"SJAG_04039":null,"SJAG_04062":null,"SJAG_04141":null,"SJAG_04142":null,"SJAG_04186":null,"SJAG_04252":null,"SJAG_04253":null,"SJAG_04257":null,"SJAG_04396":null,"SJAG_04412":null,"SJAG_04508":null,"SJAG_04574":null,"SJAG_04623":null,"SJAG_04670":null,"SJAG_04768":null,"SJAG_04855":null,"SJAG_05329":null,"SJAG_05372":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005694"],"is_obsolete":false,"name":"heterochromatin","references_by_uniquename":{"GO_REF:0000107":null,"PMID:32109380":null},"secondary_identifiers":["GO:0035328","Wikipedia:Heterochromatin","NIF_Subcellular:sao581845896","GO:0005720"],"synonyms":[{"name":"nuclear heterochromatin","type":"narrow"},{"name":"transcriptionally inactive chromatin","type":"exact"},{"name":"transcriptionally silent chromatin","type":"exact"}],"termid":"GO:0000792","terms_by_termid":{"GO:0000792":null,"GO:0005721":null,"GO:0030958":null,"GO:0031934":null,"GO:0033553":null,"GO:0140720":null,"GO:1990342":null,"GO:1990343":null}}


id: MONDO:0003403
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A classification of testicular cancers that arise in specialized sex cells called germ cells. Nonseminomas include embryonal carcinoma, teratoma, choriocarcinoma, and yolk sac tumor.","definition_xrefs":["NCIT:C5027"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant testicular germ cell tumor","termid":"MONDO:0003510"},{"relation_name":"is_a","term_name":"testicular non-seminomatous germ cell tumor","termid":"MONDO:0006447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"testicular non-seminomatous germ cell cancer","secondary_identifiers":["DOID:5345","MEDGEN:233162","UMLS:C1334625"],"synonyms":[{"name":"malignant non-seminomatous germ cell cancer of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell cancer of the testis","type":"exact"},{"name":"malignant non-seminomatous germ cell neoplasm of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell neoplasm of the testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumor of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumor of the testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumour of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumour of the testis","type":"exact"},{"name":"malignant testicular non-seminomatous germ cell neoplasm","type":"exact"},{"name":"malignant testicular non-seminomatous germ cell tumor","type":"exact"},{"name":"malignant testicular non-seminomatous germ cell tumour","type":"exact"},{"name":"testicular germ cell tumor non-seminomatous, malignant","type":"exact"},{"name":"testicular germ cell tumour non-seminomatous, malignant","type":"exact"},{"name":"testicular non-seminomatous germ cell cancer","type":"exact"},{"name":"testicular non-seminomatous germ cell tumor, malignant","type":"exact"},{"name":"testicular non-seminomatous malignant germ cell neoplasm","type":"exact"}],"termid":"MONDO:0003403","xrefs":{"Monarch":{"xref_id":"0003403"}}}


id: MONDO:0958194
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"craniofacial microsomia","termid":"MONDO:0015397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"craniofacial microsomia 2","secondary_identifiers":["MEDGEN:1830923","OMIM:620444","UMLS:C5781610"],"termid":"MONDO:0958194","xrefs":{"Monarch":{"xref_id":"0958194"}}}


id: PBO:0061625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nudix hydrolase 9","termid":"PBO:0061625"}


id: PBO:0017749
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase delta 3'-5' exonuclease-to-polymerase ratio is about 1:30","termid":"PBO:0017749"}


id: GO:0070489
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The adhesion of one T cell to one or more other T cells via adhesion molecules.","definition_xrefs":["PMID:12972508","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte aggregation","termid":"GO:0071593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"T cell aggregation","synonyms":[{"name":"T lymphocyte aggregation","type":"exact"},{"name":"T-cell aggregation","type":"exact"},{"name":"T-lymphocyte aggregation","type":"exact"}],"termid":"GO:0070489"}


id: PBO:0063196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate cancer associated transcript 18","termid":"PBO:0063196"}


id: PBO:0042108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 181","termid":"PBO:0042108"}


id: MONDO:0850170
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A childhood spinal muscular atrophy that is evident before birth and characterized by diminished movement in the womb, joint deformities, extremely weak muscle tone and very weak respiratory muscles.","definition_xrefs":["DOID:0080667"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"spinal muscular atrophy, type 1","termid":"MONDO:0009669"},{"relation_name":"is_a","term_name":"spinal muscular atrophy","termid":"MONDO:0001516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"spinal muscular atrophy type 0","secondary_identifiers":["MEDGEN:1843403","UMLS:C4324643"],"termid":"MONDO:0850170","xrefs":{"Monarch":{"xref_id":"0850170"}}}


id: PBO:0044352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 39","termid":"PBO:0044352"}


id: PBO:0084001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycerol dehydrogenase; involved in an alternative pathway for glycerol catabolism used under microaerobic conditions; also has mRNA binding activity; member of the aldo-keto reductase (AKR) family; human homolog AKR1B1 can complement yeast null mutant; protein abundance increases in response to DNA replication stress; GCY1 has a paralog, YPR1, that arose from the whole genome duplication","termid":"PBO:0084001"}


id: PBO:0039776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aquaporin 7 pseudogene 1","termid":"PBO:0039776"}


id: PBO:0039303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALK receptor tyrosine kinase","termid":"PBO:0039303"}


id: PBO:0051071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 5-18","termid":"PBO:0051071"}


id: GO:0004594
data:
  {"annotated_genes":["SJAG_00427"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110095],"is_not":false,"summary":null,"term":"GO:0004594"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + pantothenate = ADP + D-4'-phosphopantothenate.","definition_xrefs":["EC:2.7.1.33"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00427":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016301","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"pantothenate kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-199203","RHEA:16373","MetaCyc:PANTOTHENATE-KIN-RXN","Reactome:R-HSA-196857"],"synonyms":[{"name":"ATP:(R)-pantothenate 4'-phosphotransferase activity","type":"related"},{"name":"ATP:pantothenate 4'-phosphotransferase activity","type":"related"},{"name":"D-pantothenate kinase activity","type":"related"},{"name":"pantothenate kinase (phosphorylating) activity","type":"related"},{"name":"pantothenic acid kinase activity","type":"related"}],"termid":"GO:0004594","terms_by_termid":{"GO:0004594":null}}


id: PATO:0000838
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000838 absolute auditory ability value (obsolete PATO:0000838)","termid":"PATO:0000838"}


id: PBO:0055927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 37 member A15, pseudogene","termid":"PBO:0055927"}


id: GO:1903165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a polycyclic arene stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","GOC:mr","PMID:10998501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to polycyclic arene","termid":"GO:1903165"}


id: PBO:0065718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Prader Willi/Angelman region RNA 4","termid":"PBO:0065718"}


id: MONDO:0013570
data:
  {"annotated_genes":["SJAG_01797"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85457],"is_not":false,"summary":null,"term":"MONDO:0013570"}]},"cv_name":"mondo","definition":"Combined oxidative phosphorylation defect type 8 is a mitochondrial disease due to a defect in mitochondrial protein synthesis resulting in deficiency of respiratory chain complexes I, III and IV in the cardiac and skeletal muscle and brain characterized by severe hypertrophic cardiomyopathy, pulmonary hypoplasia, generalized muscle weakness and neurological involvement.","definition_xrefs":["Orphanet:319504"],"direct_ancestors":[{"relation_name":"is_a","term_name":"combined oxidative phosphorylation deficiency","termid":"MONDO:0000732"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01797":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"combined oxidative phosphorylation defect type 8","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1377817","UMLS:C4518839","OMIM:614096","SCTID:733600007","GARD:17452","DOID:0111479"],"synonyms":[{"name":"AARS2 combined oxidative phosphorylation deficiency","type":"exact"},{"name":"COXPD8","type":"exact"},{"name":"cardiomyopathy, hypertrophic mitochondrial, fatal infantile","type":"related"},{"name":"combined oxidative phosphorylation deficiency 8","type":"related"},{"name":"combined oxidative phosphorylation deficiency caused by mutation in AARS2","type":"exact"},{"name":"combined oxidative phosphorylation deficiency type 8","type":"exact"}],"termid":"MONDO:0013570","terms_by_termid":{"MONDO:0013570":null},"xrefs":{"Monarch":{"xref_id":"0013570"}}}


id: GO:0045690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of antipodal cell differentiation.","definition_xrefs":["GOC:go_curators","GOC:mtg_plant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of antipodal cell differentiation","termid":"GO:0045688"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"antipodal cell differentiation","termid":"GO:0009557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of antipodal cell differentiation","synonyms":[{"name":"activation of antipodal cell differentiation","type":"narrow"},{"name":"stimulation of antipodal cell differentiation","type":"narrow"},{"name":"up regulation of antipodal cell differentiation","type":"exact"},{"name":"up-regulation of antipodal cell differentiation","type":"exact"},{"name":"upregulation of antipodal cell differentiation","type":"exact"}],"termid":"GO:0045690"}


id: PBO:0066794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 93","termid":"PBO:0066794"}


id: MONDO:0030502
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A chromosomal disorder consisting of the presence of two chromosomes of the same type in addition to the normal diploid number.","direct_ancestors":[{"relation_name":"is_a","term_name":"aneuploidy","termid":"MONDO:0700064"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetrasomy","secondary_identifiers":["MEDGEN:90710","NCIT:C36601","MESH:D058670","UMLS:C0333689"],"termid":"MONDO:0030502","xrefs":{"Monarch":{"xref_id":"0030502"}}}


id: GO:0000938
data:
  {"annotated_genes":["SJAG_04902","SJAG_02811","SJAG_01645","SJAG_03963"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[95268,96366,96634,108665],"is_not":false,"summary":null,"term":"GO:0000938"}]},"cv_name":"cellular_component","definition":"A quatrefoil tethering complex required for retrograde traffic from the early endosome back to the late Golgi and biogenesis of cytoplasmic vesicles.","definition_xrefs":["PMID:12077354","PMID:12446664","GOC:rn","GOC:clt","PMID:10637310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle tethering complex","termid":"GO:0099023"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"},{"relation_name":"part_of","term_name":"cytoplasmic vesicle","termid":"GO:0031410"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01645":null,"SJAG_02811":null,"SJAG_03963":null,"SJAG_04902":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005794","GO:0032991","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"GARP complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Golgi associated retrograde protein complex","type":"exact"},{"name":"VFT tethering complex","type":"exact"},{"name":"Vps fifty three tethering complex","type":"exact"}],"termid":"GO:0000938","terms_by_termid":{"GO:0000938":null}}


id: MONDO:0007735
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital Horner syndrome is a rare neurological disorder characterized by relative pupillary miosis and blepharoptosis, evident at birth, caused by interruption of the oculosympathetic innervation at any point along the neural pathway from the hypothalamus to the orbit. Often additional symptoms, such as enophthalmos, facial anhidrosis, iris heterochromia, conjunctival congestion, transient hypotonia and/or pupillary dilation lag, may be present. Association with birth trauma, neoplasms or vascular malformations has been reported.","definition_xrefs":["Orphanet:91413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Horner syndrome","termid":"MONDO:0001294"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"congenital Horner syndrome","secondary_identifiers":["HP:0006837","GARD:6670","OMIM:143000","UMLS:C1840475","MEDGEN:327111","MESH:C564178"],"synonyms":[{"name":"HORNER syndrome, congenital","type":"related"},{"name":"congenital Claude-Bernard-Horner syndrome","type":"exact"},{"name":"congenital Horner syndrome","type":"exact"},{"name":"congenital Horner syndrome (disease)","type":"exact"}],"termid":"MONDO:0007735","xrefs":{"Monarch":{"xref_id":"0007735"}}}


id: MONDO:0019025
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A localized tumor consisting of mature mast cells. (WHO, 2001) -- 2003","definition_xrefs":["NCIT:C7136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mastocytoma","termid":"MONDO:0003079"},{"relation_name":"is_a","term_name":"systemic mastocytosis","termid":"MONDO:0016586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"extracutaneous mastocytoma","secondary_identifiers":["SCTID:63175003","UMLS:C0272202","GARD:18871","icd11.foundation:29932455","DOID:4659","ICDO:9740/1","MEDGEN:75774","Orphanet:66662"],"synonyms":[{"name":"extracutaneous mastocytoma","type":"exact"}],"termid":"MONDO:0019025","xrefs":{"Monarch":{"xref_id":"0019025"}}}


id: PBO:0035744
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_mitotic_spindle_pole_body_oscillation","termid":"PBO:0035744"}


id: PBO:0071294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 17","termid":"PBO:0071294"}


id: PBO:0083119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA Topoisomerase III; conserved protein that functions in a complex with Sgs1p and Rmi1p to relax single-stranded negatively-supercoiled DNA preferentially; DNA catenation/decatenation activity is stimulated by RPA and Sgs1p-Top3p-Rmi1p; involved in telomere stability and regulation of mitotic recombination","termid":"PBO:0083119"}


id: PBO:0068006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 308","termid":"PBO:0068006"}


id: FYPO:0007162
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of karyogamy involved in conjugation with cellular fusion is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear fusion during mating","termid":"FYPO:0000510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000301"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000301","FYPO:0000002"],"is_obsolete":false,"name":"increased duration of nuclear fusion during mating","synonyms":[{"name":"increased duration of karyogamy","type":"exact"},{"name":"increased duration of karyogamy involved in conjugation with cellular fusion","type":"exact"},{"name":"prolonged nuclear fusion during mating","type":"exact"}],"termid":"FYPO:0007162"}


id: GO:0061985
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which the presence of one carbon source leads to the modulation of the frequency, rate, or extent of the metabolism of other carbon sources.","definition_xrefs":["PMID:29295552"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolite repression","termid":"GO:0061984"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carbon catabolite repression","termid":"GO:0061985"}


id: PBO:0058220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4510","termid":"PBO:0058220"}


id: MONDO:0013547
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any mitochondrial proton-transporting ATP synthase complex deficiency in which the cause of the disease is a mutation in the ATP5F1E gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex deficiency","termid":"MONDO:0000066"},{"relation_name":"is_a","term_name":"mitochondrial proton-transporting ATP synthase complex deficiency","termid":"MONDO:0014471"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial complex V (ATP synthase) deficiency nuclear type 3","secondary_identifiers":["OMIM:614053","MEDGEN:481338","DOID:0060332","GARD:18666","UMLS:C3279708"],"synonyms":[{"name":"ATP5F1E mitochondrial proton-transporting ATP synthase complex deficiency","type":"exact"},{"name":"MC5DN3","type":"exact"},{"name":"mitochondrial Complex 5 (ATP synthase) deficiency, Atp5E type","type":"related"},{"name":"mitochondrial Complex 5 (ATP synthase) deficiency, nuclear type 3","type":"related"},{"name":"mitochondrial complex V (ATP synthase) deficiency, nuclear type 3","type":"related"},{"name":"mitochondrial proton-transporting ATP synthase complex deficiency caused by mutation in ATP5F1E","type":"exact"}],"termid":"MONDO:0013547","xrefs":{"Monarch":{"xref_id":"0013547"}}}


id: GO:0050059
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + lombricine = ADP + N-phospholombricine.","definition_xrefs":["EC:2.7.3.5","MetaCyc:LOMBRICINE-KINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, nitrogenous group as acceptor","termid":"GO:0016775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016301","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"lombricine kinase activity","secondary_identifiers":["RHEA:23292"],"synonyms":[{"name":"ATP:lombricine N-phosphotransferase activity","type":"related"}],"termid":"GO:0050059"}


id: PATO:0002048
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. This situation can affect any type of cell, including blood cells, gametes (egg and sperm cells), and skin.","definition_xrefs":["Medline:http://www.nlm.nih.gov/medlineplus"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organismal quality","termid":"PATO:0001995"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mosaicism","synonyms":[{"name":"heterogeneity","type":"related"}],"termid":"PATO:0002048"}


id: PBO:0066528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RANBP2 like and GRIP domain containing 4","termid":"PBO:0066528"}


id: PBO:0046077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A1 pseudogene 2","termid":"PBO:0046077"}


id: PBO:0000621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar amino acid efflux transporter Atg22","termid":"PBO:0000621"}


id: PBO:0043569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type VI alpha 6 chain","termid":"PBO:0043569"}


id: GO:0090100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0090092"},{"relation_name":"positively_regulates","term_name":"cell surface receptor protein serine/threonine kinase signaling pathway","termid":"GO:0007178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","synonyms":[{"name":"positive regulation of transmembrane receptor protein serine/threonine kinase signalling pathway","type":"exact"}],"termid":"GO:0090100"}


id: GO:0007482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the haltere over time, from its formation to the mature structure. The haltere is the club-shaped 'balancers' found on each side of the metathorax among the true flies (Diptera). They are the much-modified hind wings.","definition_xrefs":["GOC:jid","PMID:32659004"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imaginal disc-derived appendage development","termid":"GO:0048737"},{"relation_name":"part_of","term_name":"haltere disc development","termid":"GO:0035216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"haltere development","termid":"GO:0007482"}


id: GO:0086053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that mediates signaling interactions between an AV node cardiomyocyte and a bundle of His cardiac muscle cell by transfer of current between their adjacent cytoplasms via intercellular protein channels.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell communication by electrical coupling involved in cardiac conduction","termid":"GO:0086064"},{"relation_name":"is_a","term_name":"AV node cell to bundle of His cell communication","termid":"GO:0086067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"AV node cell to bundle of His cell communication by electrical coupling","synonyms":[{"name":"atrioventricular node cell to bundle of His cell communication by electrical coupling","type":"exact"}],"termid":"GO:0086053"}


id: PBO:0002854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I upstream activation factor complex subunit Rrn5","termid":"PBO:0002854"}


id: GO:0070989
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of removing one or more methyl groups from a molecule, involving the oxidation (i.e. electron loss) of one or more atoms in the substrate.","definition_xrefs":["GOC:mah","GOC:rl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"demethylation","termid":"GO:0070988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oxidative demethylation","termid":"GO:0070989"}


id: PBO:0058456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5100","termid":"PBO:0058456"}


id: PBO:0081683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 605","termid":"PBO:0081683"}


id: PBO:0058650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6779","termid":"PBO:0058650"}


id: GO:0010379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phaseic acid (PA), a catabolite of the plant hormone abscisic acid (ABA).","definition_xrefs":["BioCyc:PWY-5271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpenoid biosynthetic process","termid":"GO:0016106"},{"relation_name":"is_a","term_name":"apocarotenoid biosynthetic process","termid":"GO:0043289"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"phaseic acid biosynthetic process","secondary_identifiers":["MetaCyc:PWY-5271"],"termid":"GO:0010379"}


id: MONDO:1010352
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microphthalmia, isolated, with coloboma that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coloboma, non-human animal","termid":"MONDO:1010319"},{"relation_name":"is_a","term_name":"microphthalmia, non-human animal","termid":"MONDO:1010324"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microphthalmia, isolated, with coloboma, non-human animal","secondary_identifiers":["OMIA:002151"],"termid":"MONDO:1010352","xrefs":{"Monarch":{"xref_id":"1010352"}}}


id: PBO:0018100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-dehydropantoate 2-reductase Pan5 (predicted)","termid":"PBO:0018100"}


id: PATO:0000190
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000190 gait (obsolete PATO:0000190)","termid":"PATO:0000190"}


id: PBO:0034122
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-surrounds","termid":"PBO:0034122"}


id: PBO:0046028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2B subunit epsilon","termid":"PBO:0046028"}


id: MONDO:0005397
data:
  {"annotated_genes":["SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86198],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007681"}]},"cv_name":"mondo","definition":"Enlargement of the thyroid gland usually caused by lack of iodine in the diet, hyperthyroidism, or thyroid nodules. Symptoms include difficulty in breathing and swallowing.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid gland disorder","termid":"MONDO:0003240"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":0,"is_obsolete":false,"name":"goiter","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:42270","EFO:0004283","MESH:D006042","ICD9:240.9","SCTID:3716002","NCIT:C26785","DOID:12176","HP:0000853","UMLS:C0018021"],"synonyms":[{"name":"Thyromegaly","type":"exact"},{"name":"goiter","type":"exact"},{"name":"goiter (disease)","type":"exact"},{"name":"goitre (disease)","type":"exact"}],"termid":"MONDO:0005397","terms_by_termid":{"MONDO:0007681":null},"xrefs":{"Monarch":{"xref_id":"0005397"}}}


id: PATO:0001229
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color saturation which is of high purity.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color saturation","termid":"PATO:0000017"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high saturation","synonyms":[{"name":"bright ","type":"exact"},{"name":"vivid","type":"related"}],"termid":"PATO:0001229"}


id: PBO:0084116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Helicase-like protein encoded within the telomeric Y' element; induced by treatment with 8-methoxypsoralen and UVA irradiation; SWAT-GFP and mCherry fusion proteins localize to the nucleus","termid":"PBO:0084116"}


id: PBO:0030126
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_nickel_level","termid":"PBO:0030126"}


id: PR:Q09720
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteasome subunit beta type-2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00153","PANTHER:PTHR11599:SF6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit beta type-4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.04c","secondary_identifiers":["UniProtKB:Q09720"],"synonyms":[{"name":"Spom972h-PSMB2","type":"exact"}],"termid":"PR:Q09720"}


id: PBO:0003800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin binding methyltransferase (predicted)","termid":"PBO:0003800"}


id: PBO:0062451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 121 pseudogene","termid":"PBO:0062451"}


id: PBO:0045320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double C2 domain gamma, pseudogene","termid":"PBO:0045320"}


id: GO:0018679
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dibenzothiophene 5,5-dioxide + FMNH2 + NADH + O2 = 2'-hydroxybiphenyl-2-sulfinate + FMN + H+ + H2O + NAD+.","definition_xrefs":["RHEA:12312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"dibenzothiophene sulfone monooxygenase (NADH) activity","secondary_identifiers":["UM-BBD_reactionID:r0235","EC:1.14.14.22","MetaCyc:RXN-20709"],"synonyms":[{"name":"dibenzothiophene-5,5-dioxide monooxygenase activity","type":"narrow"}],"termid":"GO:0018679"}


id: GO:0103043
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-D-ribose 1,2-cyclic phosphate 5-phosphate + H2O = alpha-D-ribose 1,5-bisphosphate + H+.","definition_xrefs":["EC:3.1.4.55"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"phosphoribosyl 1,2-cyclic phosphate phosphodiesterase activity","secondary_identifiers":["MetaCyc:RXN0-6710","RHEA:34795"],"synonyms":[{"name":"5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase activity","type":"related"}],"termid":"GO:0103043"}


id: GO:0000743
data:
  {"annotated_genes":["SJAG_01613","SJAG_00140","SJAG_02045","SJAG_02286","SJAG_00113"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87236,90871,94692,97070,98735],"is_not":false,"summary":null,"term":"GO:0000743"}]},"cv_name":"biological_process","definition":"The microtubule-based movement of nuclei towards one another as a prelude to karyogamy in organisms undergoing conjugation with cellular fusion.","definition_xrefs":["GOC:vw","GOC:clt","PMID:16380440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear migration along microtubule","termid":"GO:0030473"},{"relation_name":"part_of","term_name":"conjugation with cellular fusion","termid":"GO:0000747"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00113":null,"SJAG_00140":null,"SJAG_01613":null,"SJAG_02045":null,"SJAG_02286":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0000747"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0000747","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"nuclear migration involved in conjugation with cellular fusion","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0006946"],"synonyms":[{"name":"nuclear congression","type":"exact"},{"name":"nuclear migration during conjugation with cellular fusion","type":"related"}],"termid":"GO:0000743","terms_by_termid":{"GO:0000743":null}}


id: SO:1001283
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A stop codon signal for a UAA stop codon redefinition.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stop_codon_signal","termid":"SO:1001288"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UAA_stop_codon_signal","synonyms":[{"name":"UAA stop codon signal","type":"exact"}],"termid":"SO:1001283"}


id: GO:0015532
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: alpha-ketoglutarate(out) + H+(out) = alpha-ketoglutarate(in) + H+(in).","definition_xrefs":["TC:2.A.1.6.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-ketoglutarate transmembrane transporter activity","termid":"GO:0015139"},{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"alpha-ketoglutarate:proton symporter activity","synonyms":[{"name":"2-oxoglutarate:hydrogen symporter activity","type":"exact"},{"name":"2-oxoglutarate:proton symporter activity","type":"exact"},{"name":"alpha-ketoglutarate:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015532"}


id: PBO:0053741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 967","termid":"PBO:0053741"}


id: FYPO:0005194
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein degradation is decreased during S phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein degradation during vegetative growth","termid":"FYPO:0000846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein degradation during mitotic S phase","synonyms":[{"name":"decreased protein breakdown during mitotic S phase","type":"exact"},{"name":"decreased protein catabolic process during mitotic S phase","type":"exact"},{"name":"decreased protein catabolism during mitotic S phase","type":"exact"},{"name":"decreased protein degradation during S phase during mitotic cell cycle","type":"related"},{"name":"decreased protein degradation during mitotic S phase during vegetative growth","type":"exact"},{"name":"reduced protein degradation during mitotic S phase","type":"exact"}],"termid":"FYPO:0005194"}


id: MONDO:0005554
data:
  {"annotated_genes":["SJAG_04541","SJAG_03151","SJAG_03805","SJAG_04380","SJAG_04969","SJAG_01474","SJAG_01884","SJAG_00400","SJAG_04569","SJAG_04077","SJAG_04865","SJAG_00321","SJAG_02763","SJAG_04290","SJAG_05239","SJAG_03596","SJAG_02039","SJAG_04118","SJAG_00853"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84833],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012429"},{"annotations":[84663],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012471"},{"annotations":[84666],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012472"},{"annotations":[84752],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014007"},{"annotations":[86761],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014629"},{"annotations":[86716],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013944"},{"annotations":[85515],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007483"},{"annotations":[86134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013766"},{"annotations":[86238,86237],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009849"},{"annotations":[85380],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012316"},{"annotations":[84561,84560],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012481"},{"annotations":[86233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054698"},{"annotations":[86044],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054700"},{"annotations":[84916,84917],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054699"},{"annotations":[84615,84616],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011462"},{"annotations":[85918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0024541"},{"annotations":[85769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013818"},{"annotations":[85386],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0026777"},{"annotations":[85135],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010523"}]},"cv_name":"mondo","definition":"Inflammatory and degenerative diseases of connective tissue structures, such as arthritis.","definition_xrefs":["NCIT:C27204"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"autoimmune disorder of musculoskeletal system","termid":"MONDO:0000589"},{"relation_name":"excluded_subClassOf","term_name":"musculoskeletal system disorder","termid":"MONDO:0002081"},{"relation_name":"excluded_subClassOf","term_name":"immune system disorder","termid":"MONDO:0005046"},{"relation_name":"is_a","term_name":"connective tissue disorder","termid":"MONDO:0003900"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00321":null,"SJAG_00400":null,"SJAG_00853":null,"SJAG_01474":null,"SJAG_01884":null,"SJAG_02039":null,"SJAG_02763":null,"SJAG_03151":null,"SJAG_03596":null,"SJAG_03805":null,"SJAG_04077":null,"SJAG_04118":null,"SJAG_04290":null,"SJAG_04380":null,"SJAG_04541":null,"SJAG_04569":null,"SJAG_04865":null,"SJAG_04969":null,"SJAG_05239":null},"genotype_count":0,"is_obsolete":false,"name":"rheumatic disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2100152","Wikipedia:Rheumatism","MESH:D012216","ICD9:729.0","DOID:1575","MEDGEN:3157","EFO:0005755","NANDO:2100151","SCTID:396332003","UMLS:C0009326"],"synonyms":[{"name":"collagen disease","type":"related"},{"name":"collagen vascular disease","type":"related"},{"name":"connective tissue disease","type":"related"},{"name":"disease, rheumatic","type":"related"},{"name":"diseases, rheumatic","type":"related"},{"name":"enthesopathies","type":"related"},{"name":"enthesopathy","type":"related"},{"name":"inflammatory rheumatism","type":"related"},{"name":"musculoskeletal pain disorder","type":"related"},{"name":"rheumatic disease","type":"exact"},{"name":"rheumatism","type":"related"},{"name":"rheumatologic disorder","type":"exact"}],"termid":"MONDO:0005554","terms_by_termid":{"MONDO:0007483":null,"MONDO:0009849":null,"MONDO:0010523":null,"MONDO:0011462":null,"MONDO:0012316":null,"MONDO:0012429":null,"MONDO:0012471":null,"MONDO:0012472":null,"MONDO:0012481":null,"MONDO:0013766":null,"MONDO:0013818":null,"MONDO:0013944":null,"MONDO:0014007":null,"MONDO:0014629":null,"MONDO:0024541":null,"MONDO:0026777":null,"MONDO:0054698":null,"MONDO:0054699":null,"MONDO:0054700":null},"xrefs":{"Monarch":{"xref_id":"0005554"}}}


id: PBO:0036495
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactose metabolism cluster","termid":"PBO:0036495"}


id: MOD:01633
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-asparagine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-asparagine residue","termid":"MOD:00903"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparagine removal","termid":"MOD:01633"}


id: PBO:0048793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit alpha L","termid":"PBO:0048793"}


id: GO:0098677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Maturation of a virion after separation from the host cell. Not all viruses mature after separation. In those that do, maturation typically involves rearangement and/or cleavage of viral proteins, resulting in the virion becoming competent for reinfection.","definition_xrefs":["ISBN:0781718325","VZ:1946"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"virus maturation","termid":"GO:0019075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"virion maturation","synonyms":[{"name":"viral particle maturation","type":"exact"},{"name":"virus particle maturation","type":"related"}],"termid":"GO:0098677"}


id: GO:0014032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell.","definition_xrefs":["GOC:dh","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stem cell development","termid":"GO:0048864"},{"relation_name":"part_of","term_name":"neural crest cell differentiation","termid":"GO:0014033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural crest cell development","termid":"GO:0014032"}


id: GO:0015278
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a calcium ion by a channel that opens when a specific intracellular ligand has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellularly ligand-gated monoatomic ion channel activity","termid":"GO:0005217"},{"relation_name":"is_a","term_name":"ligand-gated calcium channel activity","termid":"GO:0099604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"intracellularly gated calcium channel activity","secondary_identifiers":["Reactome:R-HSA-9717215","GO:0005218"],"synonyms":[{"name":"calcium-release channel activity","type":"exact"},{"name":"intracellular ligand-gated calcium channel activity","type":"related"}],"termid":"GO:0015278"}


id: PBO:0001198
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.8.1.4","termid":"PBO:0001198"}


id: GO:0008654
data:
  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id: PBO:0065587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 3","termid":"PBO:0065587"}


id: PBO:0061613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear distribution C pseudogene 1","termid":"PBO:0061613"}


id: PBO:0043658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme Q3, methyltransferase","termid":"PBO:0043658"}


id: PR:Q10217
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An acyl carrier protein, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR20863:SF5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl carrier protein, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.09","secondary_identifiers":["UniProtKB:Q10217"],"synonyms":[{"name":"ACP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NDUFAB1","type":"exact"}],"termid":"PR:Q10217"}


id: PR:Q10435
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An E3 ubiquitin-protein ligase TRIP12 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin fusion degradation protein C12B10.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12B10.01c","secondary_identifiers":["UniProtKB:Q10435"],"synonyms":[{"name":"Spom972h-TRIP12","type":"exact"}],"termid":"PR:Q10435"}


id: MONDO:0012167
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial atrial fibrillation","termid":"MONDO:0018054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"atrial fibrillation, familial, 2","secondary_identifiers":["OMIM:608988","GARD:15446","MEDGEN:324886","UMLS:C1837812","MESH:C563903"],"synonyms":[{"name":"ATFB2","type":"exact"},{"name":"atrial fibrillation, familial, 2","type":"exact"}],"termid":"MONDO:0012167","xrefs":{"Monarch":{"xref_id":"0012167"}}}


id: GO:0033042
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with soluble umami compounds to initiate a change in cell activity. These receptors are responsible for the sense of umami taste, the savory taste of meats and other foods that are rich in glutamates.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GPCR taste receptor activity","termid":"GO:0090681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"umami taste receptor activity","termid":"GO:0033042"}


id: PBO:0083300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps 5' end of essential DED1 gene required for translation initiation","termid":"PBO:0083300"}


id: SO:0002145
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H2AZ histone protein is acetylated.","definition_xrefs":["PMID:19385636","PMID:24316985","PMID:27087541"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_2AZ_acetylation_site","termid":"SO:0002144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H2AZK4_acetylation_site","synonyms":[{"name":"H2A.ZK4ac","type":"exact"},{"name":"H2AZK4 acetylation site","type":"exact"},{"name":"H2AZK4ac","type":"exact"}],"termid":"SO:0002145"}


id: GO:0015477
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A porin of the bacterial outer membrane that forms transmembrane pores and transports relatively large molecules from the external milieu to the periplasm in an energized process. Energizing of transport across the outer membrane requires a heterotrimeric complex of proteins, the TonB-ExbB-ExbD complex, or in some cases, the TolA-TolQ-TolR complex. Energizing requires proton motive force across the cytoplasmic membrane.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729","TC:1.B.13.-.-"],"gene_count":0,"genotype_count":0,"name":"obsolete receptor porin activity (obsolete GO:0015477)","synonyms":[{"name":"receptor porin activity","type":"exact"}],"termid":"GO:0015477"}


id: GO:0045012
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A major histocompatibility complex class II receptor. These display processed antigens from virally-infected or transformed cells. Class-II-positive cells ('antigen-presenting cells') can take up antigens from outside by endocytosis, degrade them into small peptides, and re-export the peptides (now bound to MHC class II protein) to the cell surface. These peptide-MHC class II complexes can then be recognized by specific CD4+ lymphocytes.","definition_xrefs":["ISBN:081533642X","ISBN:0879694971"],"gene_count":0,"genotype_count":0,"name":"obsolete MHC class II receptor activity (obsolete GO:0045012)","synonyms":[{"name":"MHC class II receptor activity","type":"exact"},{"name":"class II major histocompatibility complex antigen","type":"related"},{"name":"major histocompatibility complex class II receptor","type":"exact"}],"termid":"GO:0045012"}


id: GO:0036250
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a peroxisome along a microtubule, mediated by motor proteins.","definition_xrefs":["PMID:21525035","GOC:pm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle transport along microtubule","termid":"GO:0072384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"peroxisome transport along microtubule","termid":"GO:0036250"}


id: GO:0033447
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes an AGA codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0003723","GO:0060090","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"AGA codon-amino acid adaptor activity","synonyms":[{"name":"arginine tRNA","type":"related"}],"termid":"GO:0033447"}


id: GO:1904734
data:
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Any process that activates or increases the frequency, rate or extent of electron transfer activity.","definition_xrefs":["GOC:TermGenie","PMID:25416781","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of electron transfer activity (obsolete GO:1904734)","synonyms":[{"name":"activation of 2Fe-2S electron transfer carrier","type":"narrow"},{"name":"activation of 3Fe-4S/4Fe-4S electron transfer carrier","type":"narrow"},{"name":"activation of adrenodoxin-type ferredoxin","type":"narrow"},{"name":"activation of amicyanin","type":"narrow"},{"name":"activation of azurin","type":"narrow"},{"name":"activation of bacterial-type ferredoxin","type":"narrow"},{"name":"activation of chloroplast-type ferredoxin","type":"narrow"},{"name":"activation of copper electron carrier","type":"narrow"},{"name":"activation of dicluster bacterial-type ferredoxin","type":"narrow"},{"name":"activation of electron acceptor activity","type":"narrow"},{"name":"activation of 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chlorophyll electron transport system","type":"related"},{"name":"positive regulation of electron donor activity","type":"narrow"},{"name":"positive regulation of electron transfer flavoprotein","type":"narrow"},{"name":"positive regulation of electron transfer flavoprotein, group I","type":"narrow"},{"name":"positive regulation of electron transfer flavoprotein, group II","type":"narrow"},{"name":"positive regulation of electron transporter activity","type":"related"},{"name":"positive regulation of high-potential iron-sulfur carrier","type":"narrow"},{"name":"positive regulation of iron-sulfur electron transfer carrier","type":"narrow"},{"name":"positive regulation of monocluster bacterial-type ferredoxin","type":"narrow"},{"name":"positive regulation of mononuclear iron electron carrier","type":"narrow"},{"name":"positive regulation of polyferredoxin","type":"narrow"},{"name":"positive regulation of redox-active disulfide bond electron carrier","type":"narrow"},{"name":"positive regulation of rubredoxin","type":"narrow"},{"name":"positive regulation of small blue copper electron carrier","type":"narrow"},{"name":"positive regulation of thioredoxin-like 2Fe-2S ferredoxin","type":"narrow"},{"name":"up regulation of 2Fe-2S electron transfer carrier","type":"narrow"},{"name":"up regulation of 3Fe-4S/4Fe-4S electron transfer carrier","type":"narrow"},{"name":"up regulation of adrenodoxin-type ferredoxin","type":"narrow"},{"name":"up regulation of amicyanin","type":"narrow"},{"name":"up regulation of azurin","type":"narrow"},{"name":"up regulation of bacterial-type ferredoxin","type":"narrow"},{"name":"up regulation of chloroplast-type ferredoxin","type":"narrow"},{"name":"up regulation of copper electron carrier","type":"narrow"},{"name":"up regulation of dicluster bacterial-type ferredoxin","type":"narrow"},{"name":"up regulation of electron acceptor activity","type":"narrow"},{"name":"up regulation of electron carrier activity","type":"related"},{"name":"up 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rubredoxin","type":"narrow"},{"name":"up regulation of small blue copper electron carrier","type":"narrow"},{"name":"up regulation of thioredoxin-like 2Fe-2S ferredoxin","type":"narrow"},{"name":"up-regulation of 2Fe-2S electron transfer carrier","type":"narrow"},{"name":"up-regulation of 3Fe-4S/4Fe-4S electron transfer carrier","type":"narrow"},{"name":"up-regulation of adrenodoxin-type ferredoxin","type":"narrow"},{"name":"up-regulation of amicyanin","type":"narrow"},{"name":"up-regulation of azurin","type":"narrow"},{"name":"up-regulation of bacterial-type ferredoxin","type":"narrow"},{"name":"up-regulation of chloroplast-type ferredoxin","type":"narrow"},{"name":"up-regulation of copper electron carrier","type":"narrow"},{"name":"up-regulation of dicluster bacterial-type ferredoxin","type":"narrow"},{"name":"up-regulation of electron acceptor activity","type":"narrow"},{"name":"up-regulation of electron carrier activity","type":"related"},{"name":"up-regulation of electron carrier, chlorophyll electron transport system","type":"related"},{"name":"up-regulation of electron donor activity","type":"narrow"},{"name":"up-regulation of electron transfer flavoprotein","type":"narrow"},{"name":"up-regulation of electron transfer flavoprotein, group I","type":"narrow"},{"name":"up-regulation of electron transfer flavoprotein, group II","type":"narrow"},{"name":"up-regulation of electron transporter activity","type":"related"},{"name":"up-regulation of high-potential iron-sulfur carrier","type":"narrow"},{"name":"up-regulation of iron-sulfur electron transfer carrier","type":"narrow"},{"name":"up-regulation of monocluster bacterial-type ferredoxin","type":"narrow"},{"name":"up-regulation of mononuclear iron electron carrier","type":"narrow"},{"name":"up-regulation of polyferredoxin","type":"narrow"},{"name":"up-regulation of redox-active disulfide bond electron carrier","type":"narrow"},{"name":"up-regulation of rubredoxin","type":"narrow"},{"name":"up-regulation of small blue copper electron carrier","type":"narrow"},{"name":"up-regulation of thioredoxin-like 2Fe-2S ferredoxin","type":"narrow"},{"name":"upregulation of 2Fe-2S electron transfer carrier","type":"narrow"},{"name":"upregulation of 3Fe-4S/4Fe-4S electron transfer carrier","type":"narrow"},{"name":"upregulation of adrenodoxin-type ferredoxin","type":"narrow"},{"name":"upregulation of amicyanin","type":"narrow"},{"name":"upregulation of azurin","type":"narrow"},{"name":"upregulation of bacterial-type ferredoxin","type":"narrow"},{"name":"upregulation of chloroplast-type ferredoxin","type":"narrow"},{"name":"upregulation of copper electron carrier","type":"narrow"},{"name":"upregulation of dicluster bacterial-type ferredoxin","type":"narrow"},{"name":"upregulation of electron acceptor activity","type":"narrow"},{"name":"upregulation of electron carrier activity","type":"related"},{"name":"upregulation of electron carrier, chlorophyll electron transport system","type":"related"},{"name":"upregulation of electron donor activity","type":"narrow"},{"name":"upregulation of electron transfer flavoprotein","type":"narrow"},{"name":"upregulation of electron transfer flavoprotein, group I","type":"narrow"},{"name":"upregulation of electron transfer flavoprotein, group II","type":"narrow"},{"name":"upregulation of electron transporter activity","type":"related"},{"name":"upregulation of high-potential iron-sulfur carrier","type":"narrow"},{"name":"upregulation of iron-sulfur electron transfer carrier","type":"narrow"},{"name":"upregulation of monocluster bacterial-type ferredoxin","type":"narrow"},{"name":"upregulation of mononuclear iron electron carrier","type":"narrow"},{"name":"upregulation of polyferredoxin","type":"narrow"},{"name":"upregulation of redox-active disulfide bond electron carrier","type":"narrow"},{"name":"upregulation of rubredoxin","type":"narrow"},{"name":"upregulation of small blue copper electron carrier","type":"narrow"},{"name":"upregulation of thioredoxin-like 2Fe-2S ferredoxin","type":"narrow"}],"termid":"GO:1904734"}


id: GO:0042168
data:
  {"annotated_genes":["SJAG_01372","SJAG_03961","SJAG_00366","SJAG_01841","SJAG_04944","SJAG_02876","SJAG_04109","SJAG_00097","SJAG_01786","SJAG_05283","SJAG_03173","SJAG_01155","SJAG_03862","SJAG_02896","SJAG_01192","SJAG_04397"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109018,92671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006784"},{"annotations":[116132,113369,95261,104684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006783"},{"annotations":[106090],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042167"},{"annotations":[93920,92328,91827,95859,90453,95262,116476,66993],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006782"},{"annotations":[97288,114930],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019354"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.","definition_xrefs":["GOC:jl","ISBN:0124325653"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin-containing compound metabolic process","termid":"GO:0006778"},{"relation_name":"is_a","term_name":"pigment metabolic process","termid":"GO:0042440"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_00366":null,"SJAG_01155":null,"SJAG_01192":null,"SJAG_01372":null,"SJAG_01786":null,"SJAG_01841":null,"SJAG_02876":null,"SJAG_02896":null,"SJAG_03173":null,"SJAG_03862":null,"SJAG_03961":null,"SJAG_04109":null,"SJAG_04397":null,"SJAG_04944":null,"SJAG_05283":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"heme metabolic process","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9707616"],"synonyms":[{"name":"haem metabolic process","type":"exact"},{"name":"haem metabolism","type":"exact"},{"name":"heme metabolism","type":"exact"}],"termid":"GO:0042168","terms_by_termid":{"GO:0006782":null,"GO:0006783":null,"GO:0006784":null,"GO:0019354":null,"GO:0042167":null}}


id: PBO:0065925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB, member RAS oncogene family like 6","termid":"PBO:0065925"}


id: PBO:0081319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 101 pseudogene 2","termid":"PBO:0081319"}


id: PBO:0068947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 191, pseudogene","termid":"PBO:0068947"}


id: PBO:0088797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-diphospho-oligosaccharide-protein glycosyltransferase Ost1","termid":"PBO:0088797"}


id: GO:2001228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to gamma radiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"response to gamma radiation","termid":"GO:0010332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to gamma radiation","synonyms":[{"name":"regulation of response to gamma ray","type":"related"},{"name":"regulation of response to gamma-ray photon","type":"related"}],"termid":"GO:2001228"}


id: PBO:0004623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartate kinase (predicted)","termid":"PBO:0004623"}


id: MONDO:8000030
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete morphological anomaly (obsolete MONDO:8000030)","secondary_identifiers":["Orphanet:377791"],"termid":"MONDO:8000030","xrefs":{"Monarch":{"xref_id":"8000030"}}}


id: PBO:0059571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1 pseudogene 3","termid":"PBO:0059571"}


id: PBO:0083686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Enolase, a phosphopyruvate hydratase; catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate; complements the growth defect of an ENO1 ENO2 double mutant in glucose","termid":"PBO:0083686"}


id: PBO:0057957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3680-1","termid":"PBO:0057957"}


id: PBO:0057084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 181c","termid":"PBO:0057084"}


id: MONDO:0018956
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Idiopathic bronchiectasis (IB) is a progressive lung disease characterized by chronic dilation of the bronchi and destruction of the bronchial walls in the absence of any underlying cause (such as post infectious disease, aspiration, immunodeficiency, congenital abnormalities and ciliary anomalies).","definition_xrefs":["Orphanet:60033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bronchiectasis","termid":"MONDO:0004822"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"idiopathic bronchiectasis","secondary_identifiers":["MEDGEN:573462","SCTID:233629001","UMLS:C0339985","GARD:16664"],"termid":"MONDO:0018956","xrefs":{"Monarch":{"xref_id":"0018956"}}}


id: MONDO:0859180
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bile acid malabsorption, primary, 2","secondary_identifiers":["UMLS:C5561962","OMIM:619481","MEDGEN:1794172"],"termid":"MONDO:0859180","xrefs":{"Monarch":{"xref_id":"0859180"}}}


id: PBO:0050184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 1","termid":"PBO:0050184"}


id: PBO:0050222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2","termid":"PBO:0050222"}


id: GO:0031439
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of mRNA cleavage.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of mRNA cleavage (obsolete GO:0031439)","synonyms":[{"name":"activation of mRNA cleavage","type":"narrow"},{"name":"stimulation of mRNA cleavage","type":"narrow"},{"name":"up regulation of mRNA cleavage","type":"exact"},{"name":"up-regulation of mRNA cleavage","type":"exact"},{"name":"upregulation of mRNA cleavage","type":"exact"}],"termid":"GO:0031439"}


id: PBO:0086288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in copper homeostasis; possible role in vacuolar sorting and processing of secretory proteins; null mutants are hypersensitive to sortin2","termid":"PBO:0086288"}


id: PBO:0063801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHKA1 antisense RNA 1","termid":"PBO:0063801"}


id: PBO:0027771
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_error-prone_translesion_synthesis","termid":"PBO:0027771"}


id: PR:G2TRU6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC188.14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRU6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C188.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC188.14","synonyms":[{"name":"Spom972h-SPCC188.14","type":"exact"}],"termid":"PR:G2TRU6"}


id: GO:0036127
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 3-sulfino-L-alanine (cysteine sulfinate).","definition_xrefs":["GOC:al","PMID:8346915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid binding","termid":"GO:0016597"},{"relation_name":"is_a","term_name":"carboxylic acid binding","termid":"GO:0031406"},{"relation_name":"is_a","term_name":"modified amino acid binding","termid":"GO:0072341"},{"relation_name":"is_a","term_name":"sulfur compound binding","termid":"GO:1901681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"3-sulfino-L-alanine binding","synonyms":[{"name":"cysteine sulfinate binding","type":"exact"}],"termid":"GO:0036127"}


id: PBO:0060690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A1","termid":"PBO:0060690"}


id: FYPO:0007280
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to nuclear exosome foci is decreased. Nuclear exosome foci, also called Mmi1 foci, are small structures that form within the nucleus, and contain proteins involved in degrading meiosis-specific RNAs during the mitotic cell cycle, such as Mmi1, Iss10, and Red1.","definition_xrefs":["PomBase:mah","PMID:32012158"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to nuclear exosome focus","termid":"FYPO:0002963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to nuclear exosome focus","synonyms":[{"name":"decreased protein localisation to nuclear exosome focus","type":"exact"},{"name":"decreased protein localization to Mmi1 focus","type":"exact"},{"name":"decreased protein localization to Mmi1 nuclear focus complex","type":"exact"},{"name":"decreased protein localization to nuclear exosome foci","type":"exact"},{"name":"decreased protein localization to nuclear exosome focus during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to nuclear exosome focus during vegetative growth","type":"exact"},{"name":"reduced protein localization to nuclear exosome focus","type":"exact"}],"termid":"FYPO:0007280"}


id: PBO:0002265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH-dependent flavin oxidoreductase (predicted)","termid":"PBO:0002265"}


id: PBO:0065221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRR3 pseudogene 1","termid":"PBO:0065221"}


id: PBO:0067431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 552, pseudogene","termid":"PBO:0067431"}


id: GO:0008528
data:
  {"annotated_genes":["SJAG_01345","SJAG_01978"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004932"},{"annotations":[87619],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036320"}]},"cv_name":"molecular_function","definition":"Combining with a peptide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide receptor activity","termid":"GO:0001653"},{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01345":null,"SJAG_01978":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled peptide receptor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"G protein coupled peptide receptor activity","type":"exact"},{"name":"G-protein coupled peptide receptor activity","type":"exact"},{"name":"peptide receptor activity, G protein coupled","type":"exact"},{"name":"peptide receptor activity, G-protein coupled","type":"exact"}],"termid":"GO:0008528","terms_by_termid":{"GO:0004932":null,"GO:0036320":null}}


id: PR:O74521
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC663.15c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74521"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C663.15c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC663.15c","synonyms":[{"name":"Spom972h-SPCC663.15c","type":"exact"}],"termid":"PR:O74521"}


id: PBO:0068667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 48, pseudogene","termid":"PBO:0068667"}


id: MONDO:0002397
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant soft tissue neoplasm that arises from the liver. Representative examples include angiosarcoma, undifferentiated (embryonal) sarcoma, rhabdomyosarcoma, and leiomyosarcoma.","definition_xrefs":["NCIT:C4437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liver cancer","termid":"MONDO:0002691"},{"relation_name":"is_a","term_name":"soft tissue sarcoma","termid":"MONDO:0018078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"liver sarcoma","secondary_identifiers":["MEDGEN:87522","SCTID:254601002","DOID:270","UMLS:C0345906"],"synonyms":[{"name":"hepatic sarcoma","type":"exact"},{"name":"liver sarcoma","type":"exact"},{"name":"sarcoma of liver","type":"exact"},{"name":"sarcoma of the liver","type":"exact"}],"termid":"MONDO:0002397","xrefs":{"Monarch":{"xref_id":"0002397"}}}


id: GO:1900249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cytoplasmic translational elongation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of translational elongation","termid":"GO:0045901"},{"relation_name":"is_a","term_name":"regulation of cytoplasmic translational elongation","termid":"GO:1900247"},{"relation_name":"positively_regulates","term_name":"cytoplasmic translational elongation","termid":"GO:0002182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cytoplasmic translational elongation","synonyms":[{"name":"activation of cytoplasmic translational elongation","type":"narrow"},{"name":"up regulation of cytoplasmic translational elongation","type":"exact"},{"name":"up-regulation of cytoplasmic translational elongation","type":"exact"},{"name":"upregulation of cytoplasmic translational elongation","type":"exact"}],"termid":"GO:1900249"}


id: GO:0046124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine base covalently bonded to a sugar deoxyribose (a deoxyribonucleoside).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside catabolic process","termid":"GO:0006152"},{"relation_name":"is_a","term_name":"deoxyribonucleoside catabolic process","termid":"GO:0046121"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside metabolic process","termid":"GO:0046122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"purine deoxyribonucleoside catabolic process","synonyms":[{"name":"purine deoxyribonucleoside breakdown","type":"exact"},{"name":"purine deoxyribonucleoside catabolism","type":"exact"},{"name":"purine deoxyribonucleoside degradation","type":"exact"}],"termid":"GO:0046124"}


id: PBO:0039358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenin Y-linked","termid":"PBO:0039358"}


id: MONDO:0043073
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zadik-Barak-Levin syndrome","secondary_identifiers":["UMLS:C2931298","MESH:C536721","MEDGEN:444023"],"synonyms":[{"name":"dermoid cysts, hypothyroidism, cleft palate and hypodontia","type":"related"},{"name":"dermoid cysts, hypothyroidism, cleft palate, and hypodontia","type":"related"}],"termid":"MONDO:0043073","xrefs":{"Monarch":{"xref_id":"0043073"}}}


id: GO:0008020
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with incidental electromagnetic radiation, particularly visible light, and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.","definition_xrefs":["ISBN:0198506732","GOC:bf","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"},{"relation_name":"is_a","term_name":"photoreceptor activity","termid":"GO:0009881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled photoreceptor activity","secondary_identifiers":["GO:0004975"],"synonyms":[{"name":"G protein coupled photoreceptor activity","type":"exact"},{"name":"G-protein coupled photoreceptor activity","type":"exact"},{"name":"photoreceptor activity, G-protein coupled","type":"exact"}],"termid":"GO:0008020"}


id: FYPO:0003197
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell differs from normal during a cellular response to copper ion starvation. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered RNA level during vegetative growth","termid":"FYPO:0001326"},{"relation_name":"is_a","term_name":"altered RNA level during cellular response to copper ion starvation","termid":"FYPO:0006208"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"altered RNA level during cellular response to copper ion starvation during vegetative growth","synonyms":[{"name":"abnormal RNA level during cellular response to copper ion starvation during vegetative growth","type":"exact"},{"name":"altered RNA level during cellular response to copper ion starvation during mitotic cell cycle","type":"related"},{"name":"altered RNA level during cellular response to copper starvation during vegetative growth","type":"exact"},{"name":"altered RNA level during copper starvation during vegetative growth","type":"exact"},{"name":"altered cellular RNA level during cellular response to copper ion starvation during vegetative growth","type":"exact"},{"name":"altered transcript level during cellular response to copper ion starvation during vegetative growth","type":"exact"}],"termid":"FYPO:0003197"}


id: SO:0001521
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"When translocation occurs between nonhomologous chromosomes and involved an equal exchange of genetic materials.","direct_ancestors":[{"relation_name":"is_a","term_name":"translocaton_attribute","termid":"SO:0001520"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reciprocal","termid":"SO:0001521"}


id: PBO:0084578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YBR075W was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YBR074W","termid":"PBO:0084578"}


id: FYPO:0006187
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of actomyosin contractile ring assembly is normal (i.e. indistinguishable from wild type). Contractile ring assembly is the part of cytokinesis in which the actomyosin contractile ring is formed of actin, myosin, and associated proteins.","definition_xrefs":["GO:1903475","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal actomyosin contractile ring assembly","termid":"FYPO:0001368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal rate of actomyosin contractile ring assembly","synonyms":[{"name":"normal rate of actomyosin contractile ring assembly during mitotic cell cycle","type":"related"},{"name":"normal rate of actomyosin contractile ring assembly during vegetative growth","type":"exact"},{"name":"normal rate of contractile ring assembly","type":"exact"},{"name":"normal rate of cytokinetic contractile ring assembly","type":"exact"},{"name":"normal rate of mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"normal rate of mitotic contractile ring assembly","type":"exact"}],"termid":"FYPO:0006187"}


id: MONDO:0800261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autoimmune thyroid disease, susceptibility to, 5","secondary_identifiers":["MEDGEN:411625","UMLS:C2748621"],"synonyms":[{"name":"AITD5","type":"exact"}],"termid":"MONDO:0800261","xrefs":{"Monarch":{"xref_id":"0800261"}}}


id: GO:0060891
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a limb epidermal granular cell.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keratinocyte differentiation","termid":"GO:0030216"},{"relation_name":"part_of","term_name":"limb epidermis development","termid":"GO:0060887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"limb granular cell differentiation","termid":"GO:0060891"}


id: PBO:0027152
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_vacuolar_lysine_level","termid":"PBO:0027152"}


id: PBO:0065316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 40A (pseudogene)","termid":"PBO:0065316"}


id: MONDO:0002427
data:
  {"annotated_genes":["SJAG_01317","SJAG_00087","SJAG_02119","SJAG_01438","SJAG_02377","SJAG_04622","SJAG_01179","SJAG_05332","SJAG_02084","SJAG_03393","SJAG_00526","SJAG_00645","SJAG_02196","SJAG_00421","SJAG_04418","SJAG_00579","SJAG_03692","SJAG_03923","SJAG_02457","SJAG_00863","SJAG_02242","SJAG_02885","SJAG_04533","SJAG_01356","SJAG_01286","SJAG_02680","SJAG_04233","SJAG_01168","SJAG_00059","SJAG_04641","SJAG_05212","SJAG_04822","SJAG_00686","SJAG_01945","SJAG_00933","SJAG_00380","SJAG_01400","SJAG_03862"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85377],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014744"},{"annotations":[84918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014557"},{"annotations":[85395],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0016163"},{"annotations":[86283],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011397"},{"annotations":[85796],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012784"},{"annotations":[86516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013392"},{"annotations":[86196],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014503"},{"annotations":[84653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008943"},{"annotations":[84766],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014601"},{"annotations":[85944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044720"},{"annotations":[84508],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014104"},{"annotations":[85658],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013886"},{"annotations":[86272],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011402"},{"annotations":[85033],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100340"},{"annotations":[86826],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007959"},{"annotations":[85484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033482"},{"annotations":[85171],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011330"},{"annotations":[84734],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011439"},{"annotations":[85249],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011781"},{"annotations":[86752],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008458"},{"annotations":[84686,84687],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012246"},{"annotations":[84672],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012450"},{"annotations":[85134,85133],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007574"},{"annotations":[85329],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013594"},{"annotations":[85779,85778],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014417"},{"annotations":[86642],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014934"},{"annotations":[84912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033115"},{"annotations":[84983],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032923"},{"annotations":[86052],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030312"},{"annotations":[85814,85815],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030318"},{"annotations":[85821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030323"},{"annotations":[85091],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011801"},{"annotations":[86103,86102],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018996"},{"annotations":[85106],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010547"},{"annotations":[85237],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010524"}]},"cv_name":"mondo","definition":"Diseases that affect the structure or function of the cerebellum. Cardinal manifestations of cerebellar dysfunction include dysmetria, gait ataxia, and muscle hypotonia.","definition_xrefs":["MESH:D002526"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":38,"genes_by_uniquename":{"SJAG_00059":null,"SJAG_00087":null,"SJAG_00380":null,"SJAG_00421":null,"SJAG_00526":null,"SJAG_00579":null,"SJAG_00645":null,"SJAG_00686":null,"SJAG_00863":null,"SJAG_00933":null,"SJAG_01168":null,"SJAG_01179":null,"SJAG_01286":null,"SJAG_01317":null,"SJAG_01356":null,"SJAG_01400":null,"SJAG_01438":null,"SJAG_01945":null,"SJAG_02084":null,"SJAG_02119":null,"SJAG_02196":null,"SJAG_02242":null,"SJAG_02377":null,"SJAG_02457":null,"SJAG_02680":null,"SJAG_02885":null,"SJAG_03393":null,"SJAG_03692":null,"SJAG_03862":null,"SJAG_03923":null,"SJAG_04233":null,"SJAG_04418":null,"SJAG_04533":null,"SJAG_04622":null,"SJAG_04641":null,"SJAG_04822":null,"SJAG_05212":null,"SJAG_05332":null},"genotype_count":0,"is_obsolete":false,"name":"cerebellar disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0007760","MEDGEN:40186","DOID:2786","SCTID:223176004"],"synonyms":[{"name":"cerebellum disease","type":"exact"},{"name":"cerebellum disease or disorder","type":"exact"},{"name":"disease of cerebellum","type":"exact"},{"name":"disease or disorder of cerebellum","type":"exact"},{"name":"disorder of cerebellum","type":"exact"}],"termid":"MONDO:0002427","terms_by_termid":{"MONDO:0007574":null,"MONDO:0007959":null,"MONDO:0008458":null,"MONDO:0008943":null,"MONDO:0010524":null,"MONDO:0010547":null,"MONDO:0011330":null,"MONDO:0011397":null,"MONDO:0011402":null,"MONDO:0011439":null,"MONDO:0011781":null,"MONDO:0011801":null,"MONDO:0012246":null,"MONDO:0012450":null,"MONDO:0012784":null,"MONDO:0013392":null,"MONDO:0013594":null,"MONDO:0013886":null,"MONDO:0014104":null,"MONDO:0014417":null,"MONDO:0014503":null,"MONDO:0014557":null,"MONDO:0014601":null,"MONDO:0014744":null,"MONDO:0014934":null,"MONDO:0016163":null,"MONDO:0018996":null,"MONDO:0030312":null,"MONDO:0030318":null,"MONDO:0030323":null,"MONDO:0032923":null,"MONDO:0033115":null,"MONDO:0033482":null,"MONDO:0044720":null,"MONDO:0100340":null},"xrefs":{"Monarch":{"xref_id":"0002427"}}}


id: GO:0090707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that determines the orientation of a plant organ or tissue with reference to an axis.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of anatomical structure orientation","termid":"GO:0048560"},{"relation_name":"part_of","term_name":"plant organ morphogenesis","termid":"GO:1905392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of plant organ orientation","termid":"GO:0090707"}


id: PBO:0036390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved eukaryotic protein, human LCHN ortholog","termid":"PBO:0036390"}


id: MONDO:0100222
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any immune dysregulation disease in which the cause of the disease is a mutation in the TNFAIP3 gene.","definition_xrefs":["PMID:32514655"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"A20 haploinsufficiency","secondary_identifiers":["NANDO:2200458","NANDO:1200997"],"synonyms":[{"name":"HA20","type":"exact"}],"termid":"MONDO:0100222","xrefs":{"Monarch":{"xref_id":"0100222"}}}


id: GO:0016335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a larval imaginal disc epithelium are generated and organized.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"},{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"part_of","term_name":"instar larval development","termid":"GO:0002168"},{"relation_name":"part_of","term_name":"imaginal disc morphogenesis","termid":"GO:0007560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"morphogenesis of larval imaginal disc epithelium","termid":"GO:0016335"}


id: PBO:0016048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EKC/KEOPS protein complex associated ATPase (predicted)","termid":"PBO:0016048"}


id: PBO:0054494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1894","termid":"PBO:0054494"}


id: PBO:0027868
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_oscillation_during_mitotic_cell_cycle","termid":"PBO:0027868"}


id: PBO:0028678
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_mating-type_region_heterochromatin","termid":"PBO:0028678"}


id: PBO:0056409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARCHF6 divergent transcript","termid":"PBO:0056409"}


id: PBO:0064279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology and RUN domain containing M1","termid":"PBO:0064279"}


id: PBO:0049451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GXYLT1 pseudogene 5","termid":"PBO:0049451"}


id: GO:0042074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of individual cells within the blastocyst to help establish the multi-layered body plan of the organism (gastrulation). For example, the migration of cells from the surface to the interior of the embryo (ingression).","definition_xrefs":["GOC:jl","PMID:16099638"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ameboidal-type cell migration","termid":"GO:0001667"},{"relation_name":"part_of","term_name":"gastrulation","termid":"GO:0007369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell migration involved in gastrulation","termid":"GO:0042074"}


id: GO:0035602
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands, which stops, prevents, or reduces the frequency, rate or extent of the occurrence or rate of cell death by apoptotic process in the bone marrow.","definition_xrefs":["GOC:yaf","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"part_of","term_name":"negative regulation of apoptotic process in bone marrow cell","termid":"GO:0071866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow cell","synonyms":[{"name":"FGF receptor signaling pathway involved in negative regulation of apoptosis in bone marrow","type":"exact"},{"name":"FGFR signaling pathway involved in negative regulation of apoptosis in bone marrow","type":"exact"},{"name":"fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow","type":"narrow"},{"name":"fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow","type":"exact"},{"name":"fibroblast growth factor receptor signalling pathway involved in negative regulation of apoptotic process in bone marrow","type":"exact"}],"termid":"GO:0035602"}


id: PR:G2TRN4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- erh1 gene.","definition_xrefs":["UniProtKB:G2TRN4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer of rudimentary homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19G12.17","synonyms":[{"name":"Spom972h-erh1","type":"exact"}],"termid":"PR:G2TRN4"}


id: PBO:0005818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type ATPase V1 subunit D (predicted)","termid":"PBO:0005818"}


id: GO:0010761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell migration that is accomplished by extension and retraction of a fibroblast pseudopodium. A fibroblast is a connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ameboidal-type cell migration","termid":"GO:0001667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fibroblast migration","synonyms":[{"name":"fibroblast cell migration","type":"exact"}],"termid":"GO:0010761"}


id: GO:0019290
data:
  {"annotated_genes":["SJAG_00469","SJAG_04032","SJAG_00792","SJAG_04031"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104888],"is_not":false,"summary":null,"term":"GO:0019290"},{"annotations":[93597,93589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031169"},{"annotations":[93543],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action.","definition_xrefs":["PMID:20376388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"siderophore metabolic process","termid":"GO:0009237"},{"relation_name":"is_a","term_name":"nonribosomal peptide biosynthetic process","termid":"GO:0019184"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00469":null,"SJAG_00792":null,"SJAG_04031":null,"SJAG_04032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"siderophore biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0031178","GO:0031180"],"synonyms":[{"name":"siderochrome biosynthesis","type":"narrow"},{"name":"siderochrome biosynthetic process","type":"narrow"},{"name":"siderophore anabolism","type":"exact"},{"name":"siderophore biosynthesis","type":"exact"},{"name":"siderophore biosynthetic process, peptide formation","type":"narrow"},{"name":"siderophore biosynthetic process, peptide modification","type":"narrow"},{"name":"siderophore formation","type":"exact"},{"name":"siderophore synthesis","type":"exact"}],"termid":"GO:0019290","terms_by_termid":{"GO:0019290":null,"GO:0031169":null,"GO:1905569":null}}


id: PBO:0046744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex component 3","termid":"PBO:0046744"}


id: GO:0035998
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of 7,8-dihydroneopterin 3'-triphosphate.","definition_xrefs":["GOC:yaf","UniPathway:UPA00848"],"gene_count":0,"genotype_count":0,"name":"obsolete 7,8-dihydroneopterin 3'-triphosphate biosynthetic process (obsolete GO:0035998)","synonyms":[{"name":"7,8-dihydroneopterin 3'-triphosphate anabolism","type":"exact"},{"name":"7,8-dihydroneopterin 3'-triphosphate biosynthesis","type":"exact"},{"name":"7,8-dihydroneopterin 3'-triphosphate formation","type":"exact"},{"name":"7,8-dihydroneopterin 3'-triphosphate synthesis","type":"exact"}],"termid":"GO:0035998"}


id: GO:0046174
data:
  {"annotated_genes":["SJAG_04048","SJAG_04320","SJAG_04192","SJAG_04870","SJAG_00244","SJAG_00237"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88082],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019564"},{"annotations":[115850,92544],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019563"},{"annotations":[88083],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[114541,88189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071545"},{"annotations":[104541],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006062"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol metabolic process","termid":"GO:0019751"},{"relation_name":"is_a","term_name":"alcohol catabolic process","termid":"GO:0046164"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00237":null,"SJAG_00244":null,"SJAG_04048":null,"SJAG_04192":null,"SJAG_04320":null,"SJAG_04870":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"polyol catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"polyhydric alcohol catabolic process","type":"exact"},{"name":"polyol breakdown","type":"exact"},{"name":"polyol catabolism","type":"exact"},{"name":"polyol degradation","type":"exact"}],"termid":"GO:0046174","terms_by_termid":{"GO:0006062":null,"GO:0019563":null,"GO:0019564":null,"GO:0061613":null,"GO:0071545":null}}


id: GO:0019448
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-cysteine, the L-enantiomer of 2-amino-3-mercaptopropanoic acid, i.e. (2R)-2-amino-3-mercaptopropanoic acid.","definition_xrefs":["GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine family amino acid catabolic process","termid":"GO:0009071"},{"relation_name":"is_a","term_name":"cysteine catabolic process","termid":"GO:0009093"},{"relation_name":"is_a","term_name":"L-cysteine metabolic process","termid":"GO:0046439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006790","GO:0006520","GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"L-cysteine catabolic process","synonyms":[{"name":"L-cysteine breakdown","type":"exact"},{"name":"L-cysteine catabolism","type":"exact"},{"name":"L-cysteine degradation","type":"exact"}],"termid":"GO:0019448"}


id: GO:1903032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of microtubule plus-end binding.","definition_xrefs":["GO_REF:0000059","GOC:TermGenie","PMID:16148041","GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of microtubule plus-end binding (obsolete GO:1903032)","synonyms":[{"name":"down regulation of microtubule plus-end binding","type":"exact"},{"name":"down-regulation of microtubule plus-end binding","type":"exact"},{"name":"downregulation of microtubule plus-end binding","type":"exact"},{"name":"inhibition of microtubule plus-end binding","type":"narrow"}],"termid":"GO:1903032"}


id: RO:0002445
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"interacts_with_via_parasite-host_interaction","termid":"RO:0002443"},{"relation_name":"is_a","term_name":"host_of","termid":"RO:0002453"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parasitized_by","synonyms":[{"name":"directly parasitized by","type":"exact"}],"termid":"RO:0002445"}


id: PR:Q10351
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gpi17 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI transamidase component PIG-S homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F12.09","synonyms":[{"name":"Spom972h-gpi17","type":"exact"}],"termid":"PR:Q10351"}


id: MONDO:0019696
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of extremely rare, inherited, progressive skeletal conditions that result in a particular form of short stature, called short-limb dwarfism. The short stature is the result of unusually short forearms and forelegs (mesomelia) and abnormal shortening of the bones in the hands and feet (acromelia). At birth, the hands and feet may appear abnormally short and broad. Over time, the apparent disproportion becomes even more obvious, especially during the first years of life. Additional features may include: limited extension of the elbows and arms; progressive abnormal curvature of the spine; an enlarged head; and a slightly flattened midface. Acromesomelic dysplasia is inherited as an autosomal recessive trait. There are different types of acromesomelic dysplasia, which are distinguished by their genetic cause. To read more about the different types, click on the links below. Acromesomelic dysplasia, Maroteaux type Acromesomelic dysplasia, Hunter-Thompson type Acromesomelic dysplasia, Grebe type","definition_xrefs":["GARD:0000006"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"acromesomelic dysplasia","secondary_identifiers":["GARD:6","MEDGEN:1710812","NORD:724","Orphanet:93437","icd11.foundation:2002361676","UMLS:C5235036","OMIMPS:602875","DOID:0080049","MESH:C535658"],"synonyms":[{"name":"acromesomelic dwarfism","type":"related"}],"termid":"MONDO:0019696","xrefs":{"Monarch":{"xref_id":"0019696"}}}


id: MONDO:0000780
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A allergy involving a Prunus armeniaca.","definition_xrefs":["MONDO:patterns/allergy"],"gene_count":0,"genotype_count":0,"name":"obsolete apricot allergy (obsolete MONDO:0000780)","secondary_identifiers":["DOID:0060505"],"synonyms":[{"name":"Prunus armeniaca allergic disease","type":"exact"},{"name":"Prunus armeniaca caused allergic disease","type":"exact"},{"name":"Prunus armeniaca fruit allergy","type":"exact"},{"name":"allergy of Prunus armeniaca","type":"exact"}],"termid":"MONDO:0000780","xrefs":{"Monarch":{"xref_id":"0000780"}}}


id: PBO:0061450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NR4A1 antisense RNA","termid":"PBO:0061450"}


id: GO:0004000
data:
  {"annotated_genes":["SJAG_04380"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103451],"is_not":false,"summary":null,"term":"GO:0004000"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine + H2O = inosine + NH3.","definition_xrefs":["RHEA:24408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04380":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"adenosine deaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ADENODEAMIN-RXN","Reactome:R-HSA-5693346"],"synonyms":[{"name":"adenosine aminohydrolase activity","type":"related"},{"name":"adenosine deaminase reaction","type":"exact"}],"termid":"GO:0004000","terms_by_termid":{"GO:0004000":null}}


id: GO:0005753
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A proton-transporting ATP synthase complex found in the mitochondrial membrane.","definition_xrefs":["GOC:mtg_sensu","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial proton-transporting ATP synthase complex (obsolete GO:0005753)","synonyms":[{"name":"mitochondrial respiratory chain complex V","type":"exact"}],"termid":"GO:0005753"}


id: SO:0002141
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An origin of replication that initiates late in S phase.","definition_xrefs":["PMID:23348837","PMID:9115207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"origin_of_replication","termid":"SO:0000296"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late_origin_of_replication","synonyms":[{"name":"late origin","type":"exact"},{"name":"late origin of replication","type":"exact"},{"name":"late replication origin","type":"exact"}],"termid":"SO:0002141"}


id: PBO:0066795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 94","termid":"PBO:0066795"}


id: FYECO:0000391
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which an echinocandin class of drug was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ echinocandin","termid":"FYECO:0000391"}


id: PBO:0034161
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_partial_homology_relationship_with","termid":"PBO:0034161"}


id: GO:0180009
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: basic L-amino acid(in) + neutral L-amino acid(out) = basic L-amino acid(in) + neutral L-amino acid(out).","definition_xrefs":["PMID:23506863","PMID:8663357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basic amino acid transmembrane transporter activity","termid":"GO:0015174"},{"relation_name":"is_a","term_name":"neutral L-amino acid transmembrane transporter activity","termid":"GO:0015175"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"broad specificity neutral L-amino acid:basic L-amino acid antiporter activity","synonyms":[{"name":"neutral L-amino acid:cationic L-amino acid antiporter activity","type":"exact"},{"name":"neutral L-amino acid:dibasic L-amino acid antiporter activity","type":"exact"},{"name":"neutral L-amino acid:positively-charged polar L-amino acid antiporter activity","type":"exact"},{"name":"system b(0,+)-type activity","type":"related"}],"termid":"GO:0180009"}


id: GO:0071185
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-a3, and is involved in the regulation of protein localization to the plasma membrane.","definition_xrefs":["PMID:15347688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protocadherin-alpha-protocadherin-gamma complex","termid":"GO:0071183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"protocadherin-alpha-v4-protocadherin-gamma-a3 complex","synonyms":[{"name":"Pcdhga1-Pcdhga3 complex","type":"narrow"}],"termid":"GO:0071185"}


id: MONDO:0000701
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the colon due to colonic ischemia resulting from alterations in systemic circulation or local vasculature.","definition_xrefs":["MESH:D017091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colitis","termid":"MONDO:0005292"},{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005046"],"is_obsolete":false,"name":"ischemic colitis","secondary_identifiers":["DOID:0060181","UMLS:C0162529","SCTID:30588004","MEDGEN:57930"],"synonyms":[{"name":"colonic ischemia","type":"related"}],"termid":"MONDO:0000701","xrefs":{"Monarch":{"xref_id":"0000701"}}}


id: FYPO:0001622
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-threonine measured in the vacuole is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in vacuole","termid":"FYPO:0001603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal vacuolar threonine level","synonyms":[{"name":"normal level of threonine in vacuole","type":"exact"},{"name":"normal vacuolar L-threonine level","type":"exact"},{"name":"normal vacuolar threonine level during mitotic cell cycle","type":"related"},{"name":"normal vacuolar threonine level during vegetative growth","type":"exact"}],"termid":"FYPO:0001622"}


id: MOD:01750
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a threonine residue with the Proteome Sciences TMT6plex-129 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent O-acylated residue","termid":"MOD:01719"},{"relation_name":"is_a","term_name":"TMT6plex-129 reporter+balance reagent acylated residue","termid":"MOD:01744"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMT6plex-129 reporter+balance reagent O3-acylated threonine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01750"}


id: PBO:0089453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylglycerol phospholipase C Pgc1 /SMN complex subunit Gem6, tandem fusion","termid":"PBO:0089453"}


id: GO:0034607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The sharp ventral turn performed by the male as he approaches either the hermaphrodite head or tail, whilst trying to locate his partner's vulva. Turning occurs via a sharp ventral coil of the male's tail.","definition_xrefs":["WB_REF:WBPaper00002109","PMID:18050467"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male mating behavior","termid":"GO:0060179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"turning behavior involved in mating","synonyms":[{"name":"turning behavior during mating","type":"exact"}],"termid":"GO:0034607"}


id: GO:0045188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of non-rapid eye movement sleep.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of circadian sleep/wake cycle, sleep","termid":"GO:0045187"},{"relation_name":"regulates","term_name":"circadian sleep/wake cycle, non-REM sleep","termid":"GO:0042748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of circadian sleep/wake cycle, non-REM sleep","synonyms":[{"name":"regulation of non-REM sleep","type":"exact"}],"termid":"GO:0045188"}


id: GO:0048452
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the petal. This process pertains to the physical shaping of a rudimentary structure.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"floral organ structural organization","termid":"GO:0048450"},{"relation_name":"part_of","term_name":"petal morphogenesis","termid":"GO:0048446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"petal structural organization","secondary_identifiers":["GO:0048420"],"synonyms":[{"name":"petal structural organisation","type":"exact"}],"termid":"GO:0048452"}


id: MONDO:0002799
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete nodular medulloblastoma (obsolete MONDO:0002799)","termid":"MONDO:0002799","xrefs":{"Monarch":{"xref_id":"0002799"}}}


id: GO:1904126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any convergent extension that is involved in notochord morphogenesis.","definition_xrefs":["PMID:24892953","GO_REF:0000060","GOC:dph","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"convergent extension involved in gastrulation","termid":"GO:0060027"},{"relation_name":"is_a","term_name":"convergent extension involved in organogenesis","termid":"GO:0060029"},{"relation_name":"part_of","term_name":"notochord morphogenesis","termid":"GO:0048570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"convergent extension involved in notochord morphogenesis","termid":"GO:1904126"}


id: PBO:0068460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 36, pseudogene","termid":"PBO:0068460"}


id: PBO:0060783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B10 pseudogene 1","termid":"PBO:0060783"}


id: GO:0030961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydroxylation of peptidyl-arginine to form peptidyl-hydroxyarginine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-arginine modification","termid":"GO:0018195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-arginine hydroxylation","termid":"GO:0030961"}


id: GO:0047839
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dATP + depurinated DNA = ribose triphosphate + DNA.","definition_xrefs":["EC:2.6.99.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring nitrogenous groups","termid":"GO:0016769"},{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0140097","GO:0003824","GO:0016769","GO:0003674"],"is_obsolete":false,"name":"dATP(dGTP)-DNA purinetransferase activity","secondary_identifiers":["MetaCyc:DATPDGTP--DNA-PURINE-TRANSFERASE-RXN"],"synonyms":[{"name":"dATP(dGTP)--DNA purine transferase activity","type":"exact"},{"name":"dATP(dGTP):depurinated-DNA purine transferase activity","type":"related"}],"termid":"GO:0047839"}


id: PBO:0085847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc7 mutants are defective in directing meiotic recombination events to homologous chromatids","termid":"PBO:0085847"}


id: PBO:0000385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S9","termid":"PBO:0000385"}


id: MONDO:0008671
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Waardenburg syndrome Type 2 caused by mutations in the MITF gene.","definition_xrefs":["NCIT:C75011"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Waardenburg syndrome type 2","termid":"MONDO:0019517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Waardenburg syndrome type 2A","secondary_identifiers":["MEDGEN:349786","OMIM:193510","MESH:C536464","DOID:0110950","UMLS:C1860339","GARD:5521"],"synonyms":[{"name":"MITF Waardenburg syndrome type 2","type":"exact"},{"name":"WS2A","type":"exact"},{"name":"Waardenburg syndrome type 2 caused by mutation in MITF","type":"exact"},{"name":"Waardenburg syndrome type 2A","type":"exact"},{"name":"Waardenburg syndrome type IIA","type":"exact"},{"name":"Waardenburg syndrome without dystopia canthorum","type":"related"},{"name":"Waardenburg syndrome, type 2A","type":"related"},{"name":"Ws2","type":"related"}],"termid":"MONDO:0008671","xrefs":{"Monarch":{"xref_id":"0008671"}}}


id: PBO:0082933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic assembly chaperone for ribosomal protein Rps2p; co-translationally associates with the N-terminal extension of Rps2p to facilitate expression, solubility and ribosome assembly; released prior to the nuclear import of Rps2p; required for correct processing of 20S pre-rRNA at site D to generate mature 18S rRNA; essential gene in the S288C background but not in CEN.PK2; homologous to human PDCD2L and PDCD2","termid":"PBO:0082933"}


id: GO:0044311
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A dense granule-like organelle of the apical complex of merozoites, released into the parasitophorous vacuole, mediating protease-dependent rupture and parasite exit from the infected erythrocyte.","definition_xrefs":["GOC:jl","PMID:18083092","PMID:18083098"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"apical complex","termid":"GO:0020007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"exoneme","termid":"GO:0044311"}


id: PBO:0080485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 5A","termid":"PBO:0080485"}


id: GO:0030419
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid.","definition_xrefs":["GOC:mah","PMID:10069850"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid catabolic process","termid":"GO:0009063"},{"relation_name":"is_a","term_name":"nicotianamine metabolic process","termid":"GO:0030417"},{"relation_name":"is_a","term_name":"biogenic amine catabolic process","termid":"GO:0042402"},{"relation_name":"is_a","term_name":"tricarboxylic acid catabolic process","termid":"GO:0072352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"nicotianamine catabolic process","synonyms":[{"name":"nicotianamine breakdown","type":"exact"},{"name":"nicotianamine catabolism","type":"exact"},{"name":"nicotianamine degradation","type":"exact"}],"termid":"GO:0030419"}


id: PBO:0042209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin J like","termid":"PBO:0042209"}


id: MONDO:0004277
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A common sexually transmitted bacterial infection caused by Neisseria gonorrhoeae. It is transmitted through vaginal, oral, or anal intercourse. Infected individuals may be asymptomatic. Symptoms in males include burning sensation during urination, discharge from the penis, and painful swelling of the testes. Symptoms in females include painful urination, vaginal discharge, and vaginal bleeding between periods. If untreated, the infection may lead to pelvic inflammatory disease.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"bacterial sexually transmitted disease","termid":"MONDO:0005323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gonorrhea","secondary_identifiers":["ICD9:098.2","ICD9:098","DOID:7551","MEDGEN:9077","ICD9:098.89","NCIT:C92950","SCTID:15628003","ICD9:098.32","UMLS:C0018081","MESH:D006069","Orphanet:100642"],"synonyms":[{"name":"Crosti-gianotti syndrome","type":"related"},{"name":"GC","type":"exact"},{"name":"Gianotti Crosti syndrome","type":"related"},{"name":"Neisseria gonorrhoeae infection","type":"exact"},{"name":"PAC","type":"related"},{"name":"PAS","type":"related"},{"name":"acrodermatitis, infantile lichenoid","type":"related"},{"name":"acrodermatitis, papular infantile","type":"related"},{"name":"chronic gonococcal infectious disease of lower genitourinary tract","type":"exact"},{"name":"chronic gonococcal infectious disease of upper genitourinary tract","type":"exact"},{"name":"infections, Neisseria gonorrhoeae","type":"related"},{"name":"papular acrodermatitis of childhood","type":"related"}],"termid":"MONDO:0004277","xrefs":{"Monarch":{"xref_id":"0004277"}}}


id: PBO:0003280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Rrp46 (predicted)","termid":"PBO:0003280"}


id: GO:0001986
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the baroreceptor response to increased blood pressure.","definition_xrefs":["GOC:mtg_cardio","ISBN:0721643949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of heart contraction","termid":"GO:0045822"},{"relation_name":"part_of","term_name":"baroreceptor response to increased systemic arterial blood pressure","termid":"GO:0001983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of the force of heart contraction involved in baroreceptor response to increased systemic arterial blood pressure","synonyms":[{"name":"decreased force of heart contraction during baroreceptor response to increased systemic arterial blood pressure","type":"exact"},{"name":"decreased strength of cardiac contraction during baroreceptor response to increased blood pressure","type":"exact"}],"termid":"GO:0001986"}


id: PBO:0048583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-glutamyltransferase 7","termid":"PBO:0048583"}


id: PBO:0055993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"limbic system associated membrane protein","termid":"PBO:0055993"}


id: RO:0002086
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"temporally_related_to","termid":"RO:0002222"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ends_after","termid":"RO:0002086"}


id: FYPO:0002082
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of ubiquitination of one or more specific proteins, or of specific protein sites, is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein ubiquitination during vegetative growth","termid":"FYPO:0000905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"increased protein ubiquitination during vegetative growth","synonyms":[{"name":"increased protein ubiquitination during mitotic cell cycle","type":"related"},{"name":"increased protein ubiquitinylation during vegetative growth","type":"exact"},{"name":"increased protein ubiquitylation during vegetative growth","type":"exact"}],"termid":"FYPO:0002082"}


id: GO:0086009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which ions are transported across a membrane such that the membrane potential changes in the repolarizing direction, toward the steady state potential. For example, the repolarization during an action potential is from a positive membrane potential towards a negative resting potential.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"membrane repolarization","termid":"GO:0086009"}


id: FYPO:0005668
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to cyclic AMP (cAMP). Cells stop growing (and may die) at a concentration of cAMP that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to phosphate (Pi)","termid":"FYPO:0008229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to cAMP","synonyms":[{"name":"hypersensitive to cAMP","type":"exact"},{"name":"sensitive to cAMP during mitotic cell cycle","type":"related"},{"name":"sensitive to cAMP during vegetative growth","type":"exact"},{"name":"sensitive to cyclic AMP","type":"exact"}],"termid":"FYPO:0005668"}


id: PBO:0084358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Leucine-zipper transcriptional activator; responsible for regulation of sulfur amino acid pathway; requires different combinations of auxiliary factors Cbf1p, Met28p, Met31p and Met32p; feedforward loop exists in the regulation of genes controlled by Met4p and Met32p; can be ubiquitinated by ubiquitin ligase SCF-Met30p, is either degraded or maintained in an inactive state; regulates degradation of its own DNA-binding cofactors by targeting them to SCF-Met30p","termid":"PBO:0084358"}


id: GO:0051421
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of endo-(1->4)-beta-xylanase activity, the catalysis of the endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.","definition_xrefs":["GOC:ai","EC:3.2.1.8"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of endo-1,4-beta-xylanase activity (obsolete GO:0051421)","synonyms":[{"name":"endo-1,4-beta-xylanase regulator","type":"related"},{"name":"xylanase regulator","type":"related"}],"termid":"GO:0051421"}


id: GO:0097075
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An interferon regulatory factor complex that consists of a heterodimer of interferon regulatory factor 3 and interferon regulatory factor 7.","definition_xrefs":["PMID:18068231","GOC:cna"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interferon regulatory factor complex","termid":"GO:0097071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"interferon regulatory factor 3-interferon regulatory factor 7 complex","synonyms":[{"name":"IRF3:IRF7 complex","type":"exact"}],"termid":"GO:0097075"}


id: GO:0010955
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of protein maturation by peptide bond cleavage.","definition_xrefs":["GOC:dph","GOC:tb","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of proteolysis","termid":"GO:0045861"},{"relation_name":"is_a","term_name":"regulation of protein processing","termid":"GO:0070613"},{"relation_name":"is_a","term_name":"negative regulation of protein maturation","termid":"GO:1903318"},{"relation_name":"negatively_regulates","term_name":"protein processing","termid":"GO:0016485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0008150","GO:0051604","GO:0010467"],"is_obsolete":false,"name":"negative regulation of protein processing","synonyms":[{"name":"negative regulation of protein maturation by peptide bond cleavage","type":"exact"}],"termid":"GO:0010955"}


id: PBO:0089430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human thyroid receptor interacting protein homolog, transcription coactivator","termid":"PBO:0089430"}


id: MONDO:1012215
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"persistent right aortic arch, non-human animal","termid":"MONDO:1011644"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"persistent right aortic arch, horse","secondary_identifiers":["OMIA:000794-9796"],"termid":"MONDO:1012215","xrefs":{"Monarch":{"xref_id":"1012215"}}}


id: PBO:0066605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member T2","termid":"PBO:0066605"}


id: PBO:0114377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma calcium permeable gated cation channel","termid":"PBO:0114377"}


id: GO:0015699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of antimonite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transport","termid":"GO:0098661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"antimonite transmembrane transport","synonyms":[{"name":"antimonite transport","type":"broad"}],"termid":"GO:0015699"}


id: PR:O42699
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1902 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L19-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1682.14","synonyms":[{"name":"Spom972h-rpl1902","type":"exact"}],"termid":"PR:O42699"}


id: PR:Q10310
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug68 gene.","definition_xrefs":["UniProtKB:Q10310","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 68 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6C3.07","synonyms":[{"name":"Spom972h-mug68","type":"exact"}],"termid":"PR:Q10310"}


id: PBO:0055950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 58","termid":"PBO:0055950"}


id: GO:0032369
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid transport","termid":"GO:0032368"},{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"negative regulation of lipid localization","termid":"GO:1905953"},{"relation_name":"negatively_regulates","term_name":"lipid transport","termid":"GO:0006869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of lipid transport","synonyms":[{"name":"down regulation of lipid transport","type":"exact"},{"name":"down-regulation of lipid transport","type":"exact"},{"name":"downregulation of lipid transport","type":"exact"},{"name":"inhibition of lipid transport","type":"narrow"}],"termid":"GO:0032369"}


id: MONDO:0012160
data:
  {"annotated_genes":["SJAG_00946"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85693],"is_not":false,"summary":null,"term":"MONDO:0012160"}]},"cv_name":"mondo","definition":"Spondylometaphyseal dysplasia-cone-rod dystrophy syndrome is characterized by the association of spondylometaphyseal dysplasia (marked by platyspondyly, shortening of the tubular bones and progressive metaphyseal irregularity and cupping), with postnatal growth retardation and progressive visual impairment due to cone-rod dystrophy. So far, it has been described in eight individuals. Transmission appears to be autosomal recessive.","definition_xrefs":["Orphanet:85167"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spondylometaphyseal dysplasia","termid":"MONDO:0016763"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00946":null},"genotype_count":0,"is_obsolete":false,"name":"spondylometaphyseal dysplasia-cone-rod dystrophy syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:10647","MESH:C563825","OMIM:608940","DOID:0112300","UMLS:C1837073","MEDGEN:324684"],"synonyms":[{"name":"SMD-CRD","type":"exact"},{"name":"SMDCRD","type":"related"},{"name":"SmD-CRD","type":"exact"},{"name":"spondylometaphyseal dysplasia with cone-rod dystrophy","type":"related"},{"name":"spondylometaphyseal dysplasia-cone-rod dystrophy syndrome","type":"exact"}],"termid":"MONDO:0012160","terms_by_termid":{"MONDO:0012160":null},"xrefs":{"Monarch":{"xref_id":"0012160"}}}


id: PBO:0091419
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human ELOVL7","termid":"PBO:0091419"}


id: PBO:0002190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HEAT repeat protein Ppk3","termid":"PBO:0002190"}


id: PBO:0056659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 26","termid":"PBO:0056659"}


id: PBO:0028965
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_alpha,alpha-trehalase_activity_during_cellular_response_to_nutrient","termid":"PBO:0028965"}


id: PR:O94668
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nse5 gene.","definition_xrefs":["UniProtKB:O94668","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-structural maintenance of chromosome element 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.10","synonyms":[{"name":"Spom972h-nse5","type":"exact"},{"name":"non-SMC element 5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94668"}


id: PBO:0029891
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_chromatin_silencing_at_centromere_outer_repeat","termid":"PBO:0029891"}


id: FYPO:0006687
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which DNA double-strand break resection that occurs as part of double-strand break repair via homologous recombination is decreased. DNA double-strand break resection is the process by which long-tract single-stranded 3'-end DNA is generated by removal of bases from a 5' end from which SPO11/Rec12-oligonucleotide complexes have been removed.","definition_xrefs":["PMID:21931565","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased DNA double-strand break processing","termid":"FYPO:0006686"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased DNA double-strand break processing during double-strand break repair via homologous recombination","synonyms":[{"name":"decreased DNA double-strand break resection during double-strand break repair via homologous recombination","type":"exact"},{"name":"decreased DNA double-strand break resectioning during double-strand break repair via homologous recombination","type":"exact"},{"name":"decreased DSB processing during double-strand break repair via homologous recombination","type":"exact"},{"name":"reduced DNA double-strand break processing during double-strand break repair via homologous recombination","type":"exact"}],"termid":"FYPO:0006687"}


id: PR:Q96WV1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA (guanine-N(7)-)-methyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04520","PANTHER:PTHR23417:SF1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA (guanine-N(7)-)-methyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCPB16A4.04c","secondary_identifiers":["UniProtKB:Q96WV1"],"synonyms":[{"name":"Spom972h-METTL1","type":"exact"},{"name":"tRNA (guanine(46)-N(7))-methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNA(m7G46)-methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"transfer RNA methyltransferase 8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q96WV1"}


id: RO:0002554
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of hyperparasite of","direct_ancestors":[{"relation_name":"is_a","term_name":"host_of","termid":"RO:0002453"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperparasitized_by","synonyms":[{"name":"has epiparasite","type":"related"},{"name":"has hyperparasite","type":"related"},{"name":"hyperparasitoidized by","type":"related"}],"termid":"RO:0002554"}


id: PBO:0038525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily G member 5","termid":"PBO:0038525"}


id: MONDO:0006291
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A jugulotympanic paraganglioma that metastasizes to other anatomic sites.","definition_xrefs":["NCIT:C4623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular cancer","termid":"MONDO:0002095"},{"relation_name":"is_a","term_name":"skull cancer","termid":"MONDO:0002132"},{"relation_name":"is_a","term_name":"central nervous system cancer","termid":"MONDO:0002714"},{"relation_name":"is_a","term_name":"vein disorder","termid":"MONDO:0004634"},{"relation_name":"is_a","term_name":"jugulotympanic paraganglioma","termid":"MONDO:0021064"},{"relation_name":"is_a","term_name":"malignant endocrine neoplasm","termid":"MONDO:0021069"},{"relation_name":"is_a","term_name":"peripheral nervous system cancer","termid":"MONDO:0021089"},{"relation_name":"is_a","term_name":"vascular bone neoplasm","termid":"MONDO:0024499"},{"relation_name":"is_a","term_name":"neurovascular disorder","termid":"MONDO:0043218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant jugulotympanic paraganglioma","secondary_identifiers":["MEDGEN:87584","UMLS:C0347856"],"synonyms":[{"name":"cancer of jugular body","type":"exact"},{"name":"jugular body cancer","type":"exact"},{"name":"malignant glomus jugulare neoplasm","type":"exact"},{"name":"malignant glomus jugulare tumor","type":"exact"},{"name":"malignant glomus jugulare tumour","type":"exact"},{"name":"malignant jugular body neoplasm","type":"exact"},{"name":"malignant jugulotympanic paraganglioma","type":"exact"},{"name":"malignant neoplasm of glomus jugulare","type":"exact"},{"name":"malignant neoplasm of jugular body","type":"exact"},{"name":"malignant neoplasm of the glomus jugulare","type":"exact"},{"name":"malignant tumor of glomus jugulare","type":"exact"},{"name":"malignant tumor of the glomus jugulare","type":"exact"},{"name":"malignant tumour of glomus jugulare","type":"exact"},{"name":"malignant tumour of the glomus jugulare","type":"exact"}],"termid":"MONDO:0006291","xrefs":{"Monarch":{"xref_id":"0006291"}}}


id: PBO:0062176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily M member 1","termid":"PBO:0062176"}


id: GO:0042039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The incorporation of vanadium a metallo-sulfur cluster such as VFe(7-8)S(n).","definition_xrefs":["PMID:11053414"],"gene_count":0,"genotype_count":0,"name":"obsolete vanadium incorporation into metallo-sulfur cluster (obsolete GO:0042039)","synonyms":[{"name":"vanadium incorporation into metallo-sulphur cluster","type":"exact"}],"termid":"GO:0042039"}


id: PATO:0001954
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"linear","termid":"PATO:0001199"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subulate","synonyms":[{"name":"awl-shaped","type":"exact"},{"name":"needle-like","type":"exact"}],"termid":"PATO:0001954"}


id: MONDO:0020443
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Absence of innominate vein is a rare congenital anomaly of the great veins characterized by absence of the left brachiocephalic vein (or innominate vein), resulting in an anomalous venous vasculature. Patients are usually asymptomatic and the anomaly is typically discovered intraoperatively. An association with persistence of left superior vena cava, permanent levoatrial cardinal vein or anomaly of the inferior vena cava has been reported in some cases.","definition_xrefs":["Orphanet:99112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital anomaly of superior vena cava","termid":"MONDO:0019829"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"absence of innominate vein","secondary_identifiers":["MEDGEN:1640707","UMLS:C4707656","GARD:19655"],"synonyms":[{"name":"absence of brachiocephalic vein","type":"exact"}],"termid":"MONDO:0020443","xrefs":{"Monarch":{"xref_id":"0020443"}}}


id: PBO:0063818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology like domain family A member 3","termid":"PBO:0063818"}


id: GO:0050781
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4,6-trichlorophenol + 2 H+ + 2 e- = 2,4-dichlorophenol + HCl.","definition_xrefs":["GOC:ai","PMID:12697029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"ortho-trichlorophenol reductive dehalogenase activity","synonyms":[{"name":"2,4,6-TCP reductive dehalogenase activity","type":"exact"},{"name":"2,4,6-trichlorophenol reductive dehalogenase activity","type":"exact"}],"termid":"GO:0050781"}


id: PBO:0061116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLR family pyrin domain containing 7","termid":"PBO:0061116"}


id: GO:0102646
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 14betaH-scalarane-17alpha-19-diol = all-trans-geranylfarnesol + H2O.","definition_xrefs":["GOC:pz","PMID:24200803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"14betaH-scalarane-17alpha-19-diol synthase activity","secondary_identifiers":["MetaCyc:RXN-15759"],"termid":"GO:0102646"}


id: GO:0033568
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with lactoferrin and delivering lactoferrin into the cell via endocytosis. Lactoferrin is an iron-binding glycoprotein which binds ferric iron most efficiently at low pH.","definition_xrefs":["PMID:16261254","GOC:mlg","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cargo receptor activity","termid":"GO:0038024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038024"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038024","GO:0003674"],"is_obsolete":false,"name":"lactoferrin receptor activity","termid":"GO:0033568"}


id: GO:0097554
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cilium (also called flagellum) found in Giardia species (trophozoite stage). It originates at the left anterior basal body, extends laterally through the cytoplasm, crosses the right anterior axoneme, and exits as a membrane-bound flagellum on the anterior left side of the cell.","definition_xrefs":["GOC:giardia","PMID:16607022","ISBN:9780124260207","PMID:5961344"],"direct_ancestors":[{"relation_name":"is_a","term_name":"9+2 motile cilium","termid":"GO:0097729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"left anterior flagellum","synonyms":[{"name":"left anterior cilium","type":"exact"}],"termid":"GO:0097554"}


id: MONDO:0957935
data:
  {"annotated_genes":["SJAG_03972"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85749],"is_not":false,"summary":null,"term":"MONDO:0957935"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary optic atrophy","termid":"MONDO:0043878"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"optic atrophy 15","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620583","MEDGEN:1849731","UMLS:C5882716"],"termid":"MONDO:0957935","terms_by_termid":{"MONDO:0957935":null},"xrefs":{"Monarch":{"xref_id":"0957935"}}}


id: SO:0001861
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A 10-bp promoter element bound by sterol regulatory element binding proteins (SREBPs), found in promoters of genes involved in sterol metabolism. Many variants of the sequence ATCACCCCAC function as SREs.","definition_xrefs":["GO:mah","PMID:11111080","PMID:16537923"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterol_regulatory_element","synonyms":[{"name":"SRE","type":"broad"}],"termid":"SO:0001861"}


id: SO:0001974
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcription factor binding site with consensus sequence CCGCGNGGNGGCAG, bound by CCCTF-binding factor.","definition_xrefs":["EBI:nj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTCF_binding_site","synonyms":[{"name":"CCCTF binding site","type":"exact"},{"name":"CTCF binding site","type":"exact"}],"termid":"SO:0001974"}


id: PBO:0065662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPRK antisense RNA 1","termid":"PBO:0065662"}


id: PBO:0054626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2031","termid":"PBO:0054626"}


id: GO:0097105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a presynaptic membrane, including any proteins associated with the membrane, but excluding other cellular components. A presynaptic membrane is a specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction.","definition_xrefs":["GOC:BHF","PMID:15797875","GOC:sjp","GOC:pr","PMID:18550748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane assembly","termid":"GO:0071709"},{"relation_name":"is_a","term_name":"presynaptic membrane organization","termid":"GO:0097090"},{"relation_name":"part_of","term_name":"presynapse assembly","termid":"GO:0099054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0044085"],"is_obsolete":false,"name":"presynaptic membrane assembly","synonyms":[{"name":"pre-synaptic membrane assembly","type":"exact"}],"termid":"GO:0097105"}


id: PBO:0062699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily D member 1","termid":"PBO:0062699"}


id: MONDO:0800474
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An X-linked syndromic intellectual disability caused by alterations to the SOX3 gene which leads to hypopituitarism with variable deficiency of hormones in the anterior lobe of the pituitary gland. In some cases there is also intellectual disability.","definition_xrefs":["PMID:15800844","PMID:21289259","PMID:25402377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOX3-related X-linked pituitary hormone deficiency with or without intellectual developmental disorder","termid":"MONDO:0800474","xrefs":{"Monarch":{"xref_id":"0800474"}}}


id: PBO:0075662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spectrin beta, non-erythrocytic 2","termid":"PBO:0075662"}


id: MONDO:0000107
data:
  {"annotated_genes":["SJAG_00321"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85792],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013845"},{"annotations":[85848],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957544"}]},"cv_name":"mondo","definition":"Auriculo-condylar syndrome (ACS) presents with bilateral external ear malformations ('question mark' ears), mandibular condyle hypoplasia, microstomia, micrognathia, microglossia and facial asymmetry. Additional manifestations include hypotonia, ptosis, cleft palate, puffy cheeks, developmental delay, impaired hearing and respiratory distress.","definition_xrefs":["Orphanet:137888"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"craniofacial microsomia","termid":"MONDO:0015397"},{"relation_name":"is_a","term_name":"ear malformation","termid":"MONDO:0007500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00321":null},"genotype_count":0,"is_obsolete":false,"name":"auriculocondylar syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIMPS:602483","SCTID:702443003","MEDGEN:355953","MESH:C538270","UMLS:C1865295","GARD:9798"],"synonyms":[{"name":"auriculo-condylar syndrome","type":"exact"},{"name":"dysgnathia complex","type":"related"},{"name":"ears prominent and constricted","type":"related"},{"name":"question mark ear","type":"related"},{"name":"question mark ear syndrome","type":"exact"},{"name":"question-mark ear syndrome","type":"related"}],"termid":"MONDO:0000107","terms_by_termid":{"MONDO:0013845":null,"MONDO:0957544":null},"xrefs":{"Monarch":{"xref_id":"0000107"}}}


id: GO:0019445
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of tyrosine into other compounds, including fumarate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fumarate metabolic process","termid":"GO:0006106"},{"relation_name":"is_a","term_name":"tyrosine catabolic process","termid":"GO:0006572"},{"relation_name":"is_a","term_name":"dicarboxylic acid biosynthetic process","termid":"GO:0043650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"tyrosine catabolic process to fumarate","secondary_identifiers":["MetaCyc:TYRFUMCAT-PWY"],"synonyms":[{"name":"tyrosine breakdown to fumarate","type":"exact"},{"name":"tyrosine degradation to fumarate","type":"exact"}],"termid":"GO:0019445"}


id: PBO:0053589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 615","termid":"PBO:0053589"}


id: MONDO:0019397
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"unknown leukodystrophy","secondary_identifiers":["Orphanet:84096"],"termid":"MONDO:0019397","xrefs":{"Monarch":{"xref_id":"0019397"}}}


id: FYPO:0005631
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of protein degradation is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein degradation during vegetative growth","termid":"FYPO:0000845"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0002274","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased rate of protein degradation during vegetative growth","synonyms":[{"name":"decreased rate of protein breakdown during vegetative growth","type":"exact"},{"name":"decreased rate of protein catabolic process during vegetative growth","type":"exact"},{"name":"decreased rate of protein catabolism during vegetative growth","type":"exact"},{"name":"decreased rate of protein degradation during mitotic cell cycle","type":"related"},{"name":"reduced rate of protein degradation","type":"exact"}],"termid":"FYPO:0005631"}


id: PBO:0031845
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_wall_morphology_during_vegetative_growth","termid":"PBO:0031845"}


id: PBO:0052186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium two pore domain channel subfamily K member 18","termid":"PBO:0052186"}


id: PR:G2TRT5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC663.18 gene.","definition_xrefs":["UniProtKB:G2TRT5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCOCO-like protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC663.18","synonyms":[{"name":"Spom972h-SPCC663.18","type":"exact"}],"termid":"PR:G2TRT5"}


id: MONDO:0006567
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Encephalopathy in infants due to high levels of unconjugated bilirubin that are a result of Rh incompatibility between the mother and the fetus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neonatal anemia","termid":"MONDO:0001240"},{"relation_name":"is_a","term_name":"bilirubin encephalopathy","termid":"MONDO:0018477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280","MONDO:0005066"],"is_obsolete":false,"name":"kernicterus due to isoimmunization","secondary_identifiers":["ICD10CM:P57.0","DOID:12043","icd11.foundation:1111245443","NCIT:C101270","SCTID:359007","MEDGEN:542597","UMLS:C0270204","ICD9:773.4"],"synonyms":[{"name":"kernicterus - due to isoimm.","type":"exact"},{"name":"kernicterus due to isoimmunization of fetus or newborn","type":"exact"},{"name":"kernicterus due to isoimmunization of foetus or newborn","type":"exact"},{"name":"kernicterus related to isoimmunization","type":"exact"}],"termid":"MONDO:0006567","xrefs":{"Monarch":{"xref_id":"0006567"}}}


id: GO:0060799
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the commitment of an unspecified fate to adopt an endoderm fate.","definition_xrefs":["GOC:tb","GOC:dph","GOC:sdb_2009"],"gene_count":0,"genotype_count":0,"name":"obsolete transforming growth factor beta receptor signaling pathway involved in endodermal cell fate specification (obsolete GO:0060799)","synonyms":[{"name":"transforming growth factor beta receptor signalling pathway involved in endodermal cell fate specification","type":"exact"}],"termid":"GO:0060799"}


id: GO:0004166
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + dolichyl phosphate = UDP + dolichyl N-acetyl-alpha-D-glucosaminyl phosphate.","definition_xrefs":["EC:2.4.1.153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"dolichyl-phosphate alpha-N-acetylglucosaminyltransferase activity","secondary_identifiers":["RHEA:14693","MetaCyc:2.4.1.153-RXN","GO:0004101"],"synonyms":[{"name":"UDP-N-acetyl-D-glucosamine:dolichyl-phosphate alpha-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine-dolichol phosphate N-acetylglucosaminyltransferase activity","type":"related"},{"name":"dolichyl phosphate N-acetylglucosaminyltransferase activity","type":"related"},{"name":"dolichyl phosphate acetylglucosaminyltransferase activity","type":"related"},{"name":"dolichyl-phosphate N-acetylglucosaminyltransferase activity","type":"related"},{"name":"dolichyl-phosphate acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-dolichol phosphate acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0004166"}


id: PBO:0058989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MLLT11 transcription factor 7 cofactor","termid":"PBO:0058989"}


id: GO:0019295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of coenzyme M (2-thioethansulfonate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic acid biosynthetic process","termid":"GO:0016053"},{"relation_name":"is_a","term_name":"coenzyme M metabolic process","termid":"GO:0019296"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006790","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"coenzyme M biosynthetic process","secondary_identifiers":["MetaCyc:P261-PWY"],"synonyms":[{"name":"coenzyme M anabolism","type":"exact"},{"name":"coenzyme M biosynthesis","type":"exact"},{"name":"coenzyme M formation","type":"exact"},{"name":"coenzyme M synthesis","type":"exact"}],"termid":"GO:0019295"}


id: PBO:0005507
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae GPI8","termid":"PBO:0005507"}


id: GO:0072053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the renal inner medulla over time, from its formation to the mature structure. The renal inner medulla is unique to mammalian kidneys and is the innermost region of the mammalian kidney.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"kidney development","termid":"GO:0001822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal inner medulla development","synonyms":[{"name":"inner renal medulla development","type":"exact"}],"termid":"GO:0072053"}


id: PBO:0063561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PELO antisense RNA 1","termid":"PBO:0063561"}


id: GO:0047337
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dolichyl diphosphate + long-chain-polyphosphate = dolichol-phosphate + long-chain-polyphosphate.","definition_xrefs":["EC:2.7.4.20","MetaCyc:2.7.4.20-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"dolichyl-diphosphate-polyphosphate phosphotransferase activity","secondary_identifiers":["RHEA:19417"],"synonyms":[{"name":"dolichyl-diphosphate:polyphosphate phosphotransferase activity","type":"related"},{"name":"dolichylpyrophosphate:polyphosphate phosphotransferase activity","type":"related"}],"termid":"GO:0047337"}


id: GO:0035490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the synthesis or release of any leukotriene following a stimulus as part of an inflammatory response.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"leukotriene production involved in inflammatory response","termid":"GO:0002540"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of leukotriene production involved in inflammatory response","termid":"GO:0035490"}


id: MONDO:0006917
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Necrosis induced by ischemia in the posterior cerebral artery distribution system which supplies portions of the brain stem; the thalamus; temporal lobe, and occipital lobe. Depending on the size and location of infarction, clinical features include olfaction disorders and visual problems (agnosia; alexia; hemianopsia).","definition_xrefs":["MESH:D020762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral infarction","termid":"MONDO:0002679"},{"relation_name":"is_a","term_name":"cerebral arterial disease","termid":"MONDO:0006693"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"posterior cerebral artery infarction","secondary_identifiers":["DOID:3821","EFO:1001118","MEDGEN:199818","UMLS:C0752132"],"termid":"MONDO:0006917","xrefs":{"Monarch":{"xref_id":"0006917"}}}


id: GO:0005384
data:
  {"annotated_genes":["SJAG_03850","SJAG_01007","SJAG_04096","SJAG_04867"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90186,94815,103299],"is_not":false,"summary":null,"term":"GO:0005384"},{"annotations":[108156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015410"},{"annotations":[90687],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010486"}]},"cv_name":"molecular_function","definition":"Enables the transfer of manganese (Mn) ions from one side of a membrane to the other.","definition_xrefs":["GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transition metal ion transmembrane transporter activity","termid":"GO:0046915"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01007":null,"SJAG_03850":null,"SJAG_04096":null,"SJAG_04867":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"manganese ion transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-8959798","MetaCyc:RXN0-16"],"termid":"GO:0005384","terms_by_termid":{"GO:0005384":null,"GO:0010486":null,"GO:0015410":null}}


id: PBO:0042343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD80 molecule","termid":"PBO:0042343"}


id: PBO:0087335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Specific assembly chaperone for ribosomal protein Rpl3p; co-translationally associates with nascent Rpl3p, preventing aggregation, and facilitating nuclear import; required for biogenesis of preribosomal particles; essential gene; contains five WD-repeat motifs","termid":"PBO:0087335"}


id: MONDO:0001951
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, severe form of scabies that is associated with immunosuppression. It is characterized by an immense number of mites and hyperkeratotic crusted lesions, and is usually accompanied by lymphadenopathy and eosinophilia.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"scabies","termid":"MONDO:0004525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"Norwegian scabies","secondary_identifiers":["SCTID:128870005","MEDGEN:14409","UMLS:C0028425","NCIT:C34855","DOID:14374"],"synonyms":[{"name":"crusted scabies","type":"exact"},{"name":"seven year itch","type":"related"}],"termid":"MONDO:0001951","xrefs":{"Monarch":{"xref_id":"0001951"}}}


id: PBO:0034639
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H4-K16_acetylation_at_telomere","termid":"PBO:0034639"}


id: MONDO:0024637
data:
  {"annotated_genes":["SJAG_00490","SJAG_03689","SJAG_04755","SJAG_05313","SJAG_01111","SJAG_04213"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011655"},{"annotations":[84674,84673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012252"},{"annotations":[86813,86812],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013224"},{"annotations":[86426],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859046"}]},"cv_name":"mondo","definition":"A malignant neoplasm arising exclusively from the soft tissues.","definition_xrefs":["NCIT:C4867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cancer","termid":"MONDO:0004992"},{"relation_name":"is_a","term_name":"soft tissue neoplasm","termid":"MONDO:0006424"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00490":null,"SJAG_01111":null,"SJAG_03689":null,"SJAG_04213":null,"SJAG_04755":null,"SJAG_05313":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant soft tissue neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1632429","UMLS:C4551686","SCTID:269469005"],"synonyms":[{"name":"malignant neoplasm of soft tissue","type":"exact"},{"name":"malignant neoplasm of the soft tissue","type":"exact"},{"name":"malignant soft tissue neoplasm","type":"exact"},{"name":"malignant soft tissue tumor","type":"exact"},{"name":"malignant soft tissue tumour","type":"exact"},{"name":"malignant tumor of soft tissue","type":"exact"},{"name":"malignant tumor of the soft tissue","type":"exact"},{"name":"malignant tumour of soft tissue","type":"exact"},{"name":"malignant tumour of the soft tissue","type":"exact"}],"termid":"MONDO:0024637","terms_by_termid":{"MONDO:0011655":null,"MONDO:0012252":null,"MONDO:0013224":null,"MONDO:0859046":null},"xrefs":{"Monarch":{"xref_id":"0024637"}}}


id: PBO:0114358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane phosphate (Pi) transmembrane transporter Plt1","termid":"PBO:0114358"}


id: GO:0018856
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-oxo-3-phenylpropionate + CoA + ATP = AMP + diphosphate + benzoyl acetyl-CoA.","definition_xrefs":["UM-BBD_reactionID:r0242"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"benzoyl acetate-CoA ligase activity","secondary_identifiers":["SABIO-RK:5058","KEGG_REACTION:R05452"],"termid":"GO:0018856"}


id: PBO:0068599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 50, pseudogene","termid":"PBO:0068599"}


id: MONDO:0006624
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Symptom of overactive detrusor muscle of the urinary bladder that contracts with abnormally high frequency and urgency. Overactive bladder is characterized by the frequent feeling of needing to urinate during the day, during the night, or both. urinary incontinence may or may not be present.","definition_xrefs":["MESH:D053201"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary bladder disorder","termid":"MONDO:0006026"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"overactive bladder","secondary_identifiers":["HP:0000012","ICD9:596.51","SCTID:236633002","EFO:1000781","icd11.foundation:1118102209","MedDRA:10020853","UMLS:C0878773","DOID:0070355","MEDGEN:168058"],"synonyms":[{"name":"overactive bladder","type":"exact"},{"name":"overactive bladder (disease)","type":"exact"}],"termid":"MONDO:0006624","xrefs":{"Monarch":{"xref_id":"0006624"}}}


id: MONDO:0004761
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete urethral diverticulum (obsolete MONDO:0004761)","secondary_identifiers":["DOID:9341","ICD9:599.2"],"synonyms":[{"name":"obsolete urethral diverticulum (disease)","type":"exact"}],"termid":"MONDO:0004761","xrefs":{"Monarch":{"xref_id":"0004761"}}}


id: GO:1905007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of epithelial to mesenchymal transition involved in endocardial cushion formation.","definition_xrefs":["GOC:BHF","GO_REF:0000058","GOC:TermGenie","PMID:18718461","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cardiac epithelial to mesenchymal transition","termid":"GO:0062043"},{"relation_name":"is_a","term_name":"regulation of epithelial to mesenchymal transition involved in endocardial cushion formation","termid":"GO:1905005"},{"relation_name":"positively_regulates","term_name":"epithelial to mesenchymal transition involved in endocardial cushion formation","termid":"GO:0003198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation","synonyms":[{"name":"activation of epithelial to mesenchymal transition involved in endocardial cushion formation","type":"narrow"},{"name":"up regulation of epithelial to mesenchymal transition involved in endocardial cushion formation","type":"exact"},{"name":"up-regulation of epithelial to mesenchymal transition involved in endocardial cushion formation","type":"exact"},{"name":"upregulation of epithelial to mesenchymal transition involved in endocardial cushion formation","type":"exact"}],"termid":"GO:1905007"}


id: MONDO:1012393
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"growth-hormone deficiency dwarfism,, non-human animal","termid":"MONDO:1011959"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth-hormone deficiency dwarfism, dog","secondary_identifiers":["OMIA:001473-9615"],"termid":"MONDO:1012393","xrefs":{"Monarch":{"xref_id":"1012393"}}}


id: PBO:0091443
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Staurosporine-related Protein Kinase","termid":"PBO:0091443"}


id: GO:0045668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of osteoblast differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"is_a","term_name":"regulation of osteoblast differentiation","termid":"GO:0045667"},{"relation_name":"negatively_regulates","term_name":"osteoblast differentiation","termid":"GO:0001649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of osteoblast differentiation","synonyms":[{"name":"down regulation of osteoblast differentiation","type":"exact"},{"name":"down-regulation of osteoblast differentiation","type":"exact"},{"name":"downregulation of osteoblast differentiation","type":"exact"},{"name":"inhibition of osteoblast differentiation","type":"narrow"}],"termid":"GO:0045668"}


id: PBO:0066799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 98","termid":"PBO:0066799"}


id: MONDO:0957530
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"breast-ovarian cancer, familial, susceptibility to","termid":"MONDO:0100526"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast-ovarian cancer, familial, susceptibility to, 5","secondary_identifiers":["OMIM:620442","UMLS:C5830615","MEDGEN:1841251"],"termid":"MONDO:0957530","xrefs":{"Monarch":{"xref_id":"0957530"}}}


id: GO:0002536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phase of elevated metabolic activity, during which oxygen consumption increases following a stimulus as part of an inflammatory response; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals, resulting in an increase in their intracellular or extracellular levels.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"production of molecular mediator involved in inflammatory response","termid":"GO:0002532"},{"relation_name":"is_a","term_name":"respiratory burst involved in defense response","termid":"GO:0002679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"respiratory burst involved in inflammatory response","synonyms":[{"name":"oxidative burst during acute inflammatory response","type":"broad"},{"name":"production of reactive oxygen species during acute inflammatory response","type":"broad"},{"name":"respiratory burst involved in acute inflammatory response","type":"broad"}],"termid":"GO:0002536"}


id: PBO:0081881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 829","termid":"PBO:0081881"}


id: PBO:0084384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Low-affinity glucose transporter of the major facilitator superfamily; expression is induced by Hxk2p in the presence of glucose and repressed by Rgt1p when glucose is limiting; HXT1 has a paralog, HXT6, what arose from the whole genome duplication","termid":"PBO:0084384"}


id: GO:0090504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of one cell sheet over other cells or yolk.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelial sheet","termid":"GO:0002011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epiboly","termid":"GO:0090504"}


id: GO:0018149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a covalent cross-link between or within protein chains.","definition_xrefs":["GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptide cross-linking","termid":"GO:0018149"}


id: PBO:0001971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase Ubp6","termid":"PBO:0001971"}


id: MONDO:0007859
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"striate palmoplantar keratoderma","termid":"MONDO:0018865"},{"relation_name":"is_a","term_name":"hereditary palmoplantar keratoderma","termid":"MONDO:0019272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"palmoplantar keratoderma i, striate, focal, or diffuse","secondary_identifiers":["OMIM:148700","MESH:C536162","MEDGEN:419717","DOID:0081108","UMLS:C2931122","GARD:9172"],"synonyms":[{"name":"PPKS1","type":"related"},{"name":"SPPK1","type":"related"},{"name":"keratoderma, palmoplantar striate form 1","type":"related"},{"name":"keratoderma, palmoplantar, striate form 1","type":"related"},{"name":"keratosis palmoplantaris striata 1","type":"related"},{"name":"keratosis palmoplantaris striata i, AD","type":"exact"},{"name":"palmoplantar keratoderma I, striate, focal, or diffuse","type":"related"},{"name":"palmoplantar keratoderma i, striate, focal, or diffuse","type":"exact"},{"name":"striate palmoplantar keratoderma 1","type":"related"}],"termid":"MONDO:0007859","xrefs":{"Monarch":{"xref_id":"0007859"}}}


id: GO:0031329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cellular catabolic process (obsolete GO:0031329)","synonyms":[{"name":"regulation of cellular breakdown","type":"exact"},{"name":"regulation of cellular catabolism","type":"exact"},{"name":"regulation of cellular degradation","type":"exact"}],"termid":"GO:0031329"}


id: MONDO:0005374
data:
  {"annotated_genes":["SJAG_01748","SJAG_01013","SJAG_01349","SJAG_03453","SJAG_03905","SJAG_05979"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86695,86847,86694,86692,86693,86848],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018874"}]},"cv_name":"mondo","definition":"Neoplasms that affect the bone marrow. Such neoplasms may arise in the bone marrow (e.g. myeloid leukemias) or may involve the bone marrow as secondary, metastatic tumors (e.g. metastatic carcinomas to the bone marrow).","definition_xrefs":["NCIT:C35370"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematopoietic and lymphoid system neoplasm","termid":"MONDO:0002334"},{"relation_name":"is_a","term_name":"bone marrow disorder","termid":"MONDO:0003225"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01013":null,"SJAG_01349":null,"SJAG_01748":null,"SJAG_03453":null,"SJAG_03905":null,"SJAG_05979":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"bone marrow neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:238.79","MEDGEN:129203","MESH:D019046","SCTID:414824005","UMLS:C0282609","DOID:4960"],"synonyms":[{"name":"bone marrow cancer","type":"narrow"},{"name":"bone marrow neoplasm","type":"exact"},{"name":"bone marrow neoplasm (disease)","type":"exact"},{"name":"bone marrow tumor","type":"exact"},{"name":"bone marrow tumour","type":"exact"},{"name":"malignant bone marrow tumor","type":"narrow"},{"name":"malignant bone marrow tumour","type":"narrow"},{"name":"neoplasm of bone marrow","type":"exact"},{"name":"tumor of bone marrow","type":"exact"},{"name":"tumour of bone marrow","type":"exact"}],"termid":"MONDO:0005374","terms_by_termid":{"MONDO:0018874":null},"xrefs":{"Monarch":{"xref_id":"0005374"}}}


id: GO:1900374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in positive regulation of mating type switching.","definition_xrefs":["GOC:TermGenie","GOC:go_curators","PMID:8804308"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of mating type switching by regulation of transcription from RNA polymerase II promoter (obsolete GO:1900374)","synonyms":[{"name":"activation of mating type switching by regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"stimulation of mating type switching by regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"up regulation of mating type switching by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of mating type switching by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of mating type switching by regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900374"}


id: GO:1902935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a septin ring.","definition_xrefs":["PMID:16325501","GOC:TermGenie","GO_REF:0000087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cytoskeleton","termid":"GO:0044380"},{"relation_name":"is_a","term_name":"protein localization to cell cortex","termid":"GO:0072697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to septin ring","synonyms":[{"name":"protein localisation in septin ring","type":"exact"},{"name":"protein localisation to septin ring","type":"exact"},{"name":"protein localization in septin ring","type":"exact"}],"termid":"GO:1902935"}


id: FYPO:0001578
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cells grow normally (i.e. indistinguishably from wild type) in a medium containing a dipeptide such as Leu-Ala as the nitrogen source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0002058","FYPO:0002057","FYPO:0000257","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on dipeptide nitrogen source","synonyms":[{"name":"normal cell population growth on dipeptide nitrogen source","type":"exact"},{"name":"normal dipeptide utilization","type":"related"},{"name":"normal vegetative cell population growth on dipeptide nitrogen source","type":"exact"}],"termid":"FYPO:0001578"}


id: PR:O43091
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A decaprenyl-diphosphate synthase subunit 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02552"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decaprenyl-diphosphate synthase subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPJ4664.01","secondary_identifiers":["UniProtKB:O43091"],"synonyms":[{"name":"Spom972h-PDSS1","type":"exact"},{"name":"all-trans-decaprenyl-diphosphate synthase subunit 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"decaprenyl pyrophosphate synthase subunit 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O43091"}


id: GO:0018871
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 1-aminocyclopropane-1-carboxylate, the anion of 1-aminocyclopropane-1-carboxylic acid, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants.","definition_xrefs":["UM-BBD_pathwayID:acp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"},{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"1-aminocyclopropane-1-carboxylate metabolic process","synonyms":[{"name":"1-aminocyclopropane-1-carboxylate metabolism","type":"exact"},{"name":"ACP metabolic process","type":"exact"},{"name":"ACP metabolism","type":"exact"}],"termid":"GO:0018871"}


id: PBO:0063214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCCA divergent transcript","termid":"PBO:0063214"}


id: PBO:0000665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Gsk3","termid":"PBO:0000665"}


id: PBO:0088238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces japonicus specific protein","termid":"PBO:0088238"}


id: PR:P87317
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC31F10.16 gene.","definition_xrefs":["UniProtKB:P87317","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C31F10.16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC31F10.16","synonyms":[{"name":"Spom972h-SPBC31F10.16","type":"exact"}],"termid":"PR:P87317"}


id: GO:0002735
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of myeloid dendritic cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of dendritic cell cytokine production","termid":"GO:0002732"},{"relation_name":"is_a","term_name":"regulation of myeloid dendritic cell cytokine production","termid":"GO:0002733"},{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte mediated immunity","termid":"GO:0002888"},{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte cytokine production involved in immune response","termid":"GO:0061081"},{"relation_name":"positively_regulates","term_name":"myeloid dendritic cell cytokine production","termid":"GO:0002372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of myeloid dendritic cell cytokine production","synonyms":[{"name":"activation of myeloid dendritic cell cytokine production","type":"narrow"},{"name":"stimulation of myeloid dendritic cell cytokine production","type":"narrow"},{"name":"up regulation of myeloid dendritic cell cytokine production","type":"exact"},{"name":"up-regulation of myeloid dendritic cell cytokine production","type":"exact"},{"name":"upregulation of myeloid dendritic cell cytokine production","type":"exact"}],"termid":"GO:0002735"}


id: GO:0008793
data:
  {"annotated_genes":["SJAG_03312"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97850],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0080130"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: an L-alpha aromatic amino acid + 2-oxoglutarate = an aromatic oxo acid + L-glutamate.","definition_xrefs":["RHEA:17533"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016769","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"aromatic-amino-acid transaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:2.6.1.57-RXN"],"synonyms":[{"name":"ArAT","type":"related"},{"name":"aromatic amino acid aminotransferase activity","type":"exact"},{"name":"aromatic amino acid transferase activity","type":"exact"},{"name":"aromatic aminotransferase activity","type":"exact"},{"name":"aromatic-amino-acid:2-oxoglutarate aminotransferase activity","type":"exact"}],"termid":"GO:0008793","terms_by_termid":{"GO:0080130":null}}


id: MOD:00063
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-valine residue to N-acetyl-L-valine.","definition_xrefs":["PubMed:1735421","RESID:AA0054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-valine residue","termid":"MOD:00920"},{"relation_name":"is_a","term_name":"alpha-amino acetylated residue","termid":"MOD:01458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00408"}],"interesting_parent_ids":["MOD:00408"],"is_obsolete":false,"name":"N-acetyl-L-valine","synonyms":[{"name":"(2S)-2-acetamido-3-methylbutanoic acid","type":"exact"},{"name":"2-acetylamino-3-methylbutanoic acid","type":"exact"},{"name":"2-acetylazanyl-3-methylbutanoic acid","type":"exact"},{"name":"AcVal","type":"exact"},{"name":"MOD_RES N-acetylvaline","type":"exact"},{"name":"N-acetyl-L-valine","type":"exact"},{"name":"N-acetylated L-valine","type":"exact"},{"name":"N-acetylvaline","type":"exact"}],"termid":"MOD:00063"}


id: PBO:0055377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2806","termid":"PBO:0055377"}


id: GO:0003759
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Assists in the correct, non-covalent assembly of glycoproteins in vivo, but is not a component of the assembled structures when performing its normal biological function. Utilizes a lectin site as a means to associate with the unfolded glycoproteins.","definition_xrefs":["PMID:11337494","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete glycoprotein-specific chaperone activity (obsolete GO:0003759)","synonyms":[{"name":"glycoprotein-specific chaperone activity","type":"exact"}],"termid":"GO:0003759"}


id: PBO:0064321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid phosphatase related 3","termid":"PBO:0064321"}


id: PBO:0003420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex complex subunit Swc2","termid":"PBO:0003420"}


id: PBO:0036503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Rix1","termid":"PBO:0036503"}


id: PBO:0059286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L42 pseudogene 1","termid":"PBO:0059286"}


id: PBO:0061239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP56 ribonucleoprotein","termid":"PBO:0061239"}


id: PBO:0068112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 419","termid":"PBO:0068112"}


id: SO:1000045
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A ring chromosome is a chromosome whose arms have fused together to form a ring, often with the loss of the ends of the chromosome.","direct_ancestors":[{"relation_name":"has_quality","term_name":"circular","termid":"SO:0000988"},{"relation_name":"is_a","term_name":"intrachromosomal_mutation","termid":"SO:1000028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring_chromosome","secondary_identifiers":["http://en.wikipedia.org/wiki/Ring_chromosome"],"synonyms":[{"name":"(Drosophila)R","type":"related"},{"name":"(fungi)C","type":"related"},{"name":"ring chromosome","type":"exact"}],"termid":"SO:1000045"}


id: PBO:0039582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANO1 antisense RNA 1","termid":"PBO:0039582"}


id: GO:0102084
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: L-dopa + S-adenosyl-L-methionine = 3-O-methyldopa + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete L-dopa O-methyltransferase activity (obsolete GO:0102084)","termid":"GO:0102084"}


id: GO:0052872
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: tocotrienol + O2 + NADPH + H+ = 13'-hydroxy-tocotrienol + NADP+ + H2O .","definition_xrefs":["MetaCyc:RXN-11003"],"gene_count":0,"genotype_count":0,"name":"obsolete tocotrienol omega-hydroxylase activity (obsolete GO:0052872)","synonyms":[{"name":"tocotrienol 13-hydroxylase activity","type":"exact"}],"termid":"GO:0052872"}


id: PBO:0079815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like with PHD and ring finger domains 2","termid":"PBO:0079815"}


id: PBO:0077557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM263 divergent transcript","termid":"PBO:0077557"}


id: GO:0099508
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Voltage-gated ion channel activity, occurring in the presynaptic membrane, involved in regulation of presynaptic membrane potential. This is a key step in synaptic transmission, following the arrival of an action potential at the synapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated monoatomic ion channel activity","termid":"GO:0005244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential","synonyms":[{"name":"voltage gated ion channel activity involved in regulation of presynaptic membrane potential","type":"exact"},{"name":"voltage-dependent ion channel activity involved in regulation of pre-synaptic membrane potential","type":"exact"},{"name":"voltage-dependent ion channel activity involved in regulation of presynaptic membrane potential","type":"exact"},{"name":"voltage-gated ion channel activity involved in regulation of pre-synaptic membrane potential","type":"exact"},{"name":"voltage-gated ion channel activity involved in regulation of presynaptic membrane potential","type":"broad"}],"termid":"GO:0099508"}


id: PBO:0026705
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_tryptophan_level","termid":"PBO:0026705"}


id: PBO:0070301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY1 pseudogene 7","termid":"PBO:0070301"}


id: PBO:0017827
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromosome Segregation in Meiosis","termid":"PBO:0017827"}


id: MONDO:0014676
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive Emery-Dreifuss muscular dystrophy in which the cause of the disease is a mutation in the LMNA gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Emery-Dreifuss muscular dystrophy","termid":"MONDO:0016830"},{"relation_name":"is_a","term_name":"laminopathy","termid":"MONDO:0021106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0005336"],"is_obsolete":false,"name":"Emery-Dreifuss muscular dystrophy 3, autosomal recessive","secondary_identifiers":["UMLS:C2750035","DOID:0070248","MESH:C567633","GARD:18209","MEDGEN:413212","OMIM:616516"],"synonyms":[{"name":"EDMD3","type":"related"},{"name":"EMERY-Dreifuss muscular dystrophy 3, autosomal recessive","type":"related"},{"name":"Emery-Dreifuss muscular dystrophy 3, autosomal recessive","type":"exact"},{"name":"LMNA autosomal recessive Emery-Dreifuss muscular dystrophy","type":"exact"},{"name":"autosomal recessive Emery-Dreifuss muscular dystrophy caused by mutation in LMNA","type":"exact"}],"termid":"MONDO:0014676","xrefs":{"Monarch":{"xref_id":"0014676"}}}


id: PBO:0109166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRR1 family protein, cenromeric isochromosome forming, Srr1","termid":"PBO:0109166"}


id: RO:0002338
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination.","direct_ancestors":[{"relation_name":"is_a","term_name":"results_in_transport_to_from_or_in","termid":"RO:0002344"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_target_start_location","termid":"RO:0002338"}


id: GO:0072287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a metanephric distal tubule are generated and organized. The metanephric distal tubule is a metanephric nephron tubule that begins at the macula densa and extends to the metanephric connecting tubule.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"distal tubule morphogenesis","termid":"GO:0072156"},{"relation_name":"is_a","term_name":"metanephric nephron tubule morphogenesis","termid":"GO:0072282"},{"relation_name":"part_of","term_name":"metanephric distal tubule development","termid":"GO:0072235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric distal tubule morphogenesis","termid":"GO:0072287"}


id: PBO:0116315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase beta subunit (central stalk) Atp2","termid":"PBO:0116315"}


id: PBO:0060802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit S6","termid":"PBO:0060802"}


id: GO:0051079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled breakdown of the nuclear membranes during the first division of meiosis.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic nuclear membrane disassembly","termid":"GO:0051078"},{"relation_name":"part_of","term_name":"meiosis I","termid":"GO:0007127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0140013","GO:0007049","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"meiosis I nuclear membrane disassembly","synonyms":[{"name":"meiosis I nuclear envelope breakdown","type":"related"},{"name":"meiosis I nuclear envelope catabolism","type":"related"},{"name":"meiosis I nuclear envelope degradation","type":"related"},{"name":"meiosis I nuclear envelope disassembly","type":"related"}],"termid":"GO:0051079"}


id: MONDO:0005503
data:
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id: FYPO:0007127
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin contractile ring maturation is abnormal.","definition_xrefs":["PomBase:mah","GO:1902406"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle process","termid":"FYPO:0002737"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring organization","termid":"FYPO:0004738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0004803","FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring maturation","synonyms":[{"name":"abnormal actomyosin contractile ring maintenance","type":"exact"},{"name":"abnormal actomyosin contractile ring maturation during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring maturation during vegetative growth","type":"exact"},{"name":"abnormal contractile ring maturation","type":"exact"},{"name":"abnormal mitotic actomyosin contractile ring maintenance","type":"exact"},{"name":"abnormal mitotic actomyosin contractile ring maturation","type":"exact"},{"name":"abnormal mitotic contractile ring maintenance","type":"exact"}],"termid":"FYPO:0007127"}


id: GO:0140729
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that reduces or removes the toxicity of an endogenously produced substance. Mechanisms of resistance to endogenously produced compounds include modification the compound, export, sequestration, or mutations in the target enzyme.","definition_xrefs":["PMID:29763292","PMID:21923907"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detoxification","termid":"GO:0098754"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098754"}],"interesting_parent_ids":["GO:0008150","GO:0098754"],"is_obsolete":false,"name":"self-resistance to endogenously produced metabolite","synonyms":[{"name":"prevention of self-toxicity","type":"exact"},{"name":"self-resistance to bioactive secondary metabolite","type":"exact"},{"name":"self-resistance to endogenously produced compound","type":"exact"},{"name":"self-resistance to endogenously produced toxin","type":"exact"}],"termid":"GO:0140729"}


id: MONDO:0012922
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited hypertrophic pyloric stenosis","termid":"MONDO:0100239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"pyloric stenosis, infantile hypertrophic, 5","secondary_identifiers":["UMLS:C2675862","MESH:C567283","OMIM:612525","MEDGEN:390899"],"synonyms":[{"name":"IHPS5","type":"exact"},{"name":"infantile hypertrophic pyloric stenosis type 5","type":"exact"},{"name":"pyloric stenosis, infantile hypertrophic, 5","type":"exact"}],"termid":"MONDO:0012922","xrefs":{"Monarch":{"xref_id":"0012922"}}}


id: PBO:0080372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-set pre-B cell surrogate light chain 1","termid":"PBO:0080372"}


id: PBO:0083201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified gene RPC34/YNR003C","termid":"PBO:0083201"}


id: PBO:0050594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2","termid":"PBO:0050594"}


id: PBO:0042977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain helicase DNA binding protein 3","termid":"PBO:0042977"}


id: PBO:0049634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 37","termid":"PBO:0049634"}


id: MOD:00835
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to L-oxoalanine.","definition_xrefs":["PubMed:9478923","Unimod:401#S","PubMed:9276974","PubMed:7628016","DeltaMass:349","RESID:AA0185#SER","PubMed:14563551","PubMed:8681943"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"},{"relation_name":"is_a","term_name":"L-3-oxoalanine","termid":"MOD:01169"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-3-oxoalanine (Ser)","synonyms":[{"name":"(S)-2-amino-3-oxopropanoic acid","type":"exact"},{"name":"2-amino-3-oxopropionic acid","type":"exact"},{"name":"C(alpha)-formylglycine","type":"related"},{"name":"Didehydro","type":"related"},{"name":"L-3-oxoalanine","type":"exact"},{"name":"L-amino-malonic acid semialdehyde","type":"exact"},{"name":"L-aminomalonaldehydic acid","type":"exact"},{"name":"L-serinesemialdehyde","type":"related"},{"name":"MOD_RES 3-oxoalanine (Ser)","type":"exact"},{"name":"dehydrogenated serine residue","type":"related"},{"name":"formylglycine","type":"related"},{"name":"formylglycine (from serine)","type":"exact"},{"name":"oxoalanine","type":"related"}],"termid":"MOD:00835"}


id: MONDO:0010156
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive spastic paraplegia type 20 (SPG20) is a type of complex hereditary spastic paraplegia characterized by an onset in infancy of progressive spastic paraparesis associated with distal amyotrophy, psuedobulbar palsy, motor and cognitive delays, mild cerebellar signs (dysarthria, dysdiadochokinesia, mild intention tremor), short stature and subtle skeletal abnormalities (pes cavus, mild talipes equinovarus, kyphoscoliosis). SPG20 is due to mutations in the SPG20 gene (13q13.1), which encodes the protein spartin.","definition_xrefs":["Orphanet:101000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complex hereditary spastic paraplegia","termid":"MONDO:0015150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"Troyer syndrome","secondary_identifiers":["ICD9:335.29","SCTID:230264003","MEDGEN:97950","MESH:C536858","DOID:0050886","OMIM:275900","GARD:5372","UMLS:C0393559"],"synonyms":[{"name":"Cross-McKusick syndrome","type":"related"},{"name":"SPG20","type":"exact"},{"name":"Troyer syndrome","type":"exact"},{"name":"autosomal recessive spastic paraplegia 20","type":"exact"},{"name":"autosomal recessive spastic paraplegia Troyer type","type":"exact"},{"name":"autosomal recessive spastic paraplegia type 20","type":"exact"},{"name":"childhood-onset spastic paraparesis with distal muscle wasting","type":"exact"},{"name":"childhood-onset spastic paraparesis-distal muscle wasting syndrome","type":"exact"},{"name":"hereditary spastic paraplegia 20","type":"exact"},{"name":"spastic paraparesis, childhood-onset, with distal muscle wasting","type":"related"},{"name":"spastic paraplegia 20","type":"related"},{"name":"spastic paraplegia 20 (Troyer syndrome)","type":"exact"},{"name":"spastic paraplegia 20, autosomal recessive","type":"related"},{"name":"spastic paraplegia type 20","type":"exact"},{"name":"spastic paraplegia, autosomal recessive, Troyer type","type":"related"}],"termid":"MONDO:0010156","xrefs":{"Monarch":{"xref_id":"0010156"}}}


id: PBO:0036344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroorotase Ura2","termid":"PBO:0036344"}


id: GO:0005211
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete plasma glycoprotein (obsolete GO:0005211)","synonyms":[{"name":"plasma glycoprotein","type":"exact"}],"termid":"GO:0005211"}


id: GO:0047247
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: luteolin 7-O-[(beta-D-glucosiduronate)-(1->2)-(beta-D-glucosiduronate)] + UDP-alpha-D-glucuronate = H+ + luteolin 7-O-[(beta-D-glucosiduronate)-(1->2)-(beta-D-glucosiduronate)] 4'-O-beta-D-glucosiduronate + UDP.","definition_xrefs":["EC:2.4.1.191","RHEA:22116"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronosyltransferase activity","termid":"GO:0015020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"luteolin-7-O-diglucuronide 4'-O-glucuronosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.191-RXN","KEGG_REACTION:R06828"],"synonyms":[{"name":"LDT","type":"related"},{"name":"UDP-glucuronate:luteolin 7-O-diglucuronide-glucuronosyltransferase activity","type":"related"},{"name":"UDP-glucuronate:luteolin-7-O-beta-D-diglucuronide 4'-O-glucuronosyltransferase activity","type":"related"},{"name":"UDPglucuronate:luteolin 7-O-diglucuronide-4'-O-glucuronosyl-transferase activity","type":"related"},{"name":"UDPglucuronate:luteolin-7-O-beta-D-diglucuronide 4'-O-glucuronosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucuronate-luteolin 7-O-diglucuronide glucuronosyltransferase activity","type":"related"}],"termid":"GO:0047247"}


id: GO:0051115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transient uridylylation of peptidyl-histidine to form 1'-(phospho-5'-uridine)-L-histidine (otherwise known as tau-UMP-histidine, tele-UMP-histidine).","definition_xrefs":["RESID:AA0372"],"gene_count":0,"genotype_count":0,"name":"obsolete enzyme active site formation via 1'-(phospho-5'-uridine)-L-histidine (obsolete GO:0051115)","termid":"GO:0051115"}


id: GO:0032393
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an MHC class I protein complex to initiate a change in cellular activity. Class I here refers to classical class I molecules.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"},{"relation_name":"is_a","term_name":"immune receptor activity","termid":"GO:0140375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"MHC class I receptor activity","synonyms":[{"name":"T cell receptor activity","type":"related"},{"name":"alpha-beta T cell receptor activity","type":"related"},{"name":"gamma-delta T cell receptor activity","type":"related"}],"termid":"GO:0032393"}


id: SO:0002200
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A (unitary) pseudogene that is stable in the population but importantly it has a functional alternative allele also in the population. i.e., one strain may have the gene, another strain may have the pseudogene. MHC haplotypes have allelic pseudogenes.","direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_tRNA","termid":"SO:0000778"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allelic_pseudogenic_tRNA","synonyms":[{"name":"INSDC_feature:tRNA","type":"exact"},{"name":"INSDC_qualifier:allelic","type":"exact"},{"name":"allelic pseudogenic tRNA","type":"exact"}],"termid":"SO:0002200"}


id: GO:0036015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-3 stimulus.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to interleukin-3","synonyms":[{"name":"response to IL-3","type":"exact"}],"termid":"GO:0036015"}


id: MONDO:0001281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of ocular misalignment where the visual axes diverge inappropriately. For example, medial rectus muscle weakness may produce this condition as the affected eye will deviate laterally upon attempted forward gaze. An exotropia occurs due to the relatively unopposed force exerted on the eye by the lateral rectus muscle, which pulls the eye in an outward direction.","definition_xrefs":["MESH:D005099"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exotropia","termid":"MONDO:0001286"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alternating exotropia","secondary_identifiers":["ICD9:378.15","SCTID:37214009","UMLS:C0152207","ICD10CM:H50.15","MEDGEN:101825","DOID:1142","icd11.foundation:1611093587"],"termid":"MONDO:0001281","xrefs":{"Monarch":{"xref_id":"0001281"}}}


id: MONDO:0015153
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal monosomy (obsolete MONDO:0015153)","secondary_identifiers":["ICD10CM:Q93.3","Orphanet:102020"],"synonyms":[{"name":"autosomal deletion","type":"exact"}],"termid":"MONDO:0015153","xrefs":{"Monarch":{"xref_id":"0015153"}}}


id: PBO:0029003
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H3_binding","termid":"PBO:0029003"}


id: PBO:0086287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in chromosomal DNA replication; interacts with Sld3p and reduces its affinity for Cdc45p; deletion mutant has aberrant mitochondria; ortholog of human MTBP, which is a DNA replication origin firing factor","termid":"PBO:0086287"}


id: PBO:0085864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; has sequence and structural similarity to flavodoxins; predicted to be palmitoylated; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0085864"}


id: PBO:0044745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 23","termid":"PBO:0044745"}


id: MONDO:0800143
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cytomegalovirus pneumonia due to variant in the NOS2 gene.","definition_xrefs":["PMID:31995689"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytomegalovirus pneumonia","termid":"MONDO:0024354"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytomegalovirus pneumonia due to NOS2 deficiency","termid":"MONDO:0800143","xrefs":{"Monarch":{"xref_id":"0800143"}}}


id: PBO:0042811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ceramide synthase 1","termid":"PBO:0042811"}


id: PBO:0079361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha 3g pseudogene","termid":"PBO:0079361"}


id: PBO:0056093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LYN proto-oncogene, Src family tyrosine kinase","termid":"PBO:0056093"}


id: GO:0008571
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. This is a highly diverse group of enzymes that perform many functions that are similar to those of chaperonins. They comprise a number of heat-shock-cognate proteins. They are also active in clathrin uncoating and in the oligomerization of actin.","definition_xrefs":["EC:3.6.4.10"],"gene_count":0,"genotype_count":0,"name":"obsolete non-chaperonin molecular chaperone ATPase activity (obsolete GO:0008571)","synonyms":[{"name":"non-chaperonin molecular chaperone ATPase activity","type":"exact"}],"termid":"GO:0008571"}


id: SO:0000124
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Expressed in relatively constant amounts without regard to cellular environmental conditions such as the concentration of a particular substrate.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptionally_regulated","termid":"SO:0000123"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally_constitutive","synonyms":[{"name":"transcriptionally constitutive","type":"exact"}],"termid":"SO:0000124"}


id: GO:0098031
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small disk located at the base of some icosahedral virus capsids.","definition_xrefs":["GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion component","termid":"GO:0044423"},{"relation_name":"part_of","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"icosahedral viral capsid, collar","termid":"GO:0098031"}


id: PBO:0061520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor binding SET domain protein 3","termid":"PBO:0061520"}


id: PBO:0116444
data:
  {"annotated_genes":["SJAG_04697"],"annotation_feature_type":"gene","cv_annotations":{"pombase_family_or_domain":[{"annotations":[56081],"is_not":false,"summary":null,"term":"PBO:0116444"}]},"cv_name":"pombase_family_or_domain","gene_count":1,"genes_by_uniquename":{"SJAG_04697":null},"genotype_count":0,"is_obsolete":false,"name":"warning frameshifted","termid":"PBO:0116444","terms_by_termid":{"PBO:0116444":null}}


