# terms

id: FYPO:0003245
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the daughter nuclei formed by mitosis cluster in the middle of the cell during telophase. Normally, daughter nuclei move away from the cell division site during mitotic telophase.","definition_xrefs":["PMID:23087209","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized nucleus during vegetative growth","termid":"FYPO:0002071"},{"relation_name":"output_of","term_name":"abolished cytokinesis","termid":"FYPO:0000417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0000032","FYPO:0005447","FYPO:0001320","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"telophase nuclear clustering","synonyms":[{"name":"daughter nuclei clustered at cell division site during mitotic telophase","type":"exact"},{"name":"kissing nuclei","type":"exact"},{"name":"nuclear clustering during mitotic telophase","type":"exact"},{"name":"nuclei clustered at cell division site during mitotic telophase","type":"exact"},{"name":"telophase nuclear clustering during vegetative growth","type":"related"}],"termid":"FYPO:0003245"}


id: MONDO:0019321
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A heterogeneous group of cases that are clinically diagnosed as Werner syndrome (WS) but do not carry WRN gene mutations. Similar to classical WS caused by WRN mutations, patients generally exhibit an aged appearance and common age-related disorders at earlier ages compared to the general population.","definition_xrefs":["Orphanet:79474"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"progeroid syndrome","termid":"MONDO:0015333"},{"relation_name":"is_a","term_name":"laminopathy","termid":"MONDO:0021106"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atypical Werner syndrome","secondary_identifiers":["icd11.foundation:1661142154","GARD:11910","MEDGEN:894770","SCTID:715633008","UMLS:C4275075"],"synonyms":[{"name":"atypical progeroid syndrome","type":"exact"}],"termid":"MONDO:0019321","xrefs":{"Monarch":{"xref_id":"0019321"}}}


id: PBO:0052540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 13","termid":"PBO:0052540"}


id: PBO:0018118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOG/XMAP14 microtubule-associated protein Dis1","termid":"PBO:0018118"}


id: FYPO:0005185
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that contains one or more septa, has condensed chromatin, and undergoes two or more rounds of cell division, and then dies.","definition_xrefs":["PomBase:mah","PMID:8557037","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions","termid":"FYPO:0002430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, septated cell with condensed chromatin","synonyms":[{"name":"inviable following spore germination, multiple cell divisions, septated cell with condensed chromatin","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, septated cell with condensed chromatin","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, septated cell with condensed chromatin","type":"exact"}],"termid":"FYPO:0005185"}


id: PBO:0078233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 15","termid":"PBO:0078233"}


id: PBO:0002140
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae SUB2","termid":"PBO:0002140"}


id: PBO:0055794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysyl oxidase like 3","termid":"PBO:0055794"}


id: MONDO:0014902
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any nasopharyngeal carcinoma in which the cause of the disease is a mutation in the MST1R gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nasopharyngeal carcinoma, susceptibility to, 3","secondary_identifiers":["OMIM:617075","MEDGEN:934696","UMLS:C4310729"],"synonyms":[{"name":"MST1R nasopharyngeal carcinoma","type":"exact"},{"name":"NPCA3","type":"exact"},{"name":"nasopharyngeal carcinoma caused by mutation in MST1R","type":"exact"},{"name":"nasopharyngeal carcinoma, susceptibility to, 3","type":"exact"},{"name":"nasopharyngeal carcinoma, susceptibility to, 3; NPCA3","type":"exact"},{"name":"nasopharyngeal carcinoma, susceptibility to, type 3","type":"exact"},{"name":"susceptibility to nasopharyngeal carcinoma 3","type":"related"}],"termid":"MONDO:0014902","xrefs":{"Monarch":{"xref_id":"0014902"}}}


id: MONDO:0013150
data:
  {"annotated_genes":["SJAG_04840"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86859],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030676"}]},"cv_name":"mondo","definition":"Infantile dystonia-parkinsonism (IPD) is an extremely rare inherited neurological syndrome that presents in early infancy with hypokinetic parkinsonism and dystonia and that can be fatal.","definition_xrefs":["Orphanet:238455"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"combined dystonia","termid":"MONDO:0020065"},{"relation_name":"is_a","term_name":"parkinsonian disorder","termid":"MONDO:0021095"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04840":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"}],"interesting_parent_ids":["MONDO:0003441"],"is_obsolete":false,"name":"parkinsonism-dystonia, infantile","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C567730","NCIT:C129866","OMIMPS:613135","SCTID:722763000","UMLS:C2751067","MEDGEN:413468","GARD:10484"],"synonyms":[{"name":"IPD","type":"exact"},{"name":"PARKINSONISM-dystonia, infantile","type":"exact"},{"name":"PKDYS","type":"exact"},{"name":"Parkinsonism-dystonia infantile","type":"exact"},{"name":"dopamine transporter deficiency syndrome","type":"exact"},{"name":"infantile Parkinsonism-dystonia","type":"exact"},{"name":"parkinsonism-dystonia, infantile","type":"exact"}],"termid":"MONDO:0013150","terms_by_termid":{"MONDO:0030676":null},"xrefs":{"Monarch":{"xref_id":"0013150"}}}


id: MONDO:0004352
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An ependymoma of the brain occurring in adults.","definition_xrefs":["NCIT:C9372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ependymal tumor of brain","termid":"MONDO:0004245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adult brain ependymoma","secondary_identifiers":["DOID:7750","UMLS:C1332186","MEDGEN:231033"],"synonyms":[{"name":"adult brain ependymoma","type":"exact"},{"name":"brain ependymoma","type":"broad"}],"termid":"MONDO:0004352","xrefs":{"Monarch":{"xref_id":"0004352"}}}


id: PBO:0056556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minichromosome maintenance complex component 4","termid":"PBO:0056556"}


id: GO:0047655
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: allyl alcohol + NADP+ = acrolein + H+ + NADPH.","definition_xrefs":["EC:1.1.1.54","RHEA:12168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"allyl-alcohol dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R03572","MetaCyc:ALLYL-ALCOHOL-DEHYDROGENASE-RXN"],"synonyms":[{"name":"allyl-alcohol:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0047655"}


id: PBO:0048075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 26","termid":"PBO:0048075"}


id: MONDO:0010057
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spinal muscular atrophy","termid":"MONDO:0001516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"spinal muscular atrophy, Ryukyuan type","secondary_identifiers":["MESH:C536881","OMIM:271200","MEDGEN:376517","GARD:9646","UMLS:C1849102"],"synonyms":[{"name":"Ryukyuan muscular atrophy","type":"related"},{"name":"spinal muscular atrophy Ryukyuan type","type":"related"},{"name":"spinal muscular atrophy, Ryukyuan type","type":"exact"}],"termid":"MONDO:0010057","xrefs":{"Monarch":{"xref_id":"0010057"}}}


id: PR:O59748
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lsc1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTD kinase subunit beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC530.13","synonyms":[{"name":"CTD kinase subunit 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"CTDK-I subunit beta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-lsc1","type":"exact"},{"name":"latrunculin sensitive cyclin knockout protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59748"}


id: SO:1001192
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is alternately spliced, and encodes more than one polypeptide, that do not have overlapping peptide sequences.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"encodes_greater_than_1_polypeptide","termid":"SO:1001189"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"encodes_disjoint_polypeptides","synonyms":[{"name":"encodes disjoint polypeptides","type":"exact"}],"termid":"SO:1001192"}


id: PBO:0056778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase like 27","termid":"PBO:0056778"}


id: PBO:0004434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnesium ion transporter Mrs2 (predicted)","termid":"PBO:0004434"}


id: GO:0051710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the cytolysis by an organism of cells in another organism.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cytolysis in another organism (obsolete GO:0051710)","synonyms":[{"name":"regulation of cytolysis in other organism","type":"exact"},{"name":"regulation of cytolysis of cells of another organism","type":"exact"}],"termid":"GO:0051710"}


id: PBO:0063240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha 5","termid":"PBO:0063240"}


id: PBO:0056079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphocyte antigen 6 family member K","termid":"PBO:0056079"}


id: GO:0102938
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: orcinol + S-adenosyl-L-methionine = H+ + 3-methoxy-5-hydroxytoluene + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete orcinol O-methyltransferase activity (obsolete GO:0102938)","termid":"GO:0102938"}


id: PBO:0029625
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_phosphorylation_during_cellular_response_to_DNA_damage","termid":"PBO:0029625"}


id: PBO:0089462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces japonicus specific 6/7 TM domain protein family","termid":"PBO:0089462"}


id: GO:0031366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The removal of an amino group from the side chain of an N-terminal asparagine residue of a protein.","definition_xrefs":["GOC:mah","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete N-terminal peptidyl-asparagine deamination (obsolete GO:0031366)","termid":"GO:0031366"}


id: GO:0015894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of acriflavine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Acriflavine is a fluorescent dye used as a local antiseptic and also as a biological stain. It intercalates into nucleic acids thereby inhibiting bacterial and viral replication.","definition_xrefs":["GOC:curators","PubChem_Compound:6842"],"gene_count":0,"genotype_count":0,"name":"obsolete acriflavine transport (obsolete GO:0015894)","synonyms":[{"name":"acriflavin transport","type":"related"}],"termid":"GO:0015894"}


id: PBO:0003045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maltase alpha-glucosidase Mal1","termid":"PBO:0003045"}


id: GO:1990463
data:
  {"annotated_genes":["SJAG_00596","SJAG_04947"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[99875,104315],"is_not":false,"summary":null,"term":"GO:1990463"}]},"cv_name":"cellular_component","definition":"A protein complex that is anchored at the cortical face of the plasma membrane, and contains proteins involved in regulating cell cycle progression. In Schizosaccharomyces pombe, lateral cortical nodes are several megadaltons in size, and contain Slf1, which anchors the complex at the membrane, and the methyltransferase Skb1 in stoichiometric quantities, and may contain other proteins.","definition_xrefs":["PMID:25009287","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"lateral cell cortex","termid":"GO:0097575"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00596":null,"SJAG_04947":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991","GO:0005938"],"is_obsolete":false,"name":"lateral cortical node","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Skb1-containing cortical node","type":"exact"}],"termid":"GO:1990463","terms_by_termid":{"GO:1990463":null}}


id: PBO:0113468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC1 and TORC2 involved in TOR signaling; TORC1 regulates nutrient responsive growth and TORC2 regulates plasma membrane (PM) homeostasis and cell-cycle dependent actin cytoskeleton polarization; negative regulator of Rtg1p/3p and Gln3p transcription factors and amino acid biosynthesis; binds to both Tor1p and Tor2p, regulating the integrity and kinase activity of TORC2; PM retention is dependent on Avo3p; WD-repeat protein","termid":"PBO:0113468"}


id: FYPO:0007563
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of cell cycle arrest in response to a pheromone occurs in G1 phase, but in the absence of starvation (i.e., in nutrient-rich conditions, under which wild-type fission yeast cells do not arrest).","definition_xrefs":["PMID:11554925","PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle arrest in response to pheromone","termid":"FYPO:0000530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0000298","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"cell cycle arrest in mitotic G1 phase in response to pheromone without starvation","synonyms":[{"name":"cell cycle arrest in mitotic G1 phase in response to pheromone in absence of starvation","type":"exact"},{"name":"mitotic cell cycle arrest in response to pheromone in absence of starvation","type":"broad"},{"name":"pheromone-induced mitotic cell cycle arrest in mitotic G1 phase without starvation","type":"exact"}],"termid":"FYPO:0007563"}


id: PBO:0000352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain","termid":"PBO:0000352"}


id: GO:0021915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the neural tube over time, from its formation to the mature structure. The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium.","definition_xrefs":["GOC:jid","GOC:cls","GO_REF:0000021","GOC:dph","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"is_a","term_name":"epithelium development","termid":"GO:0060429"},{"relation_name":"part_of","term_name":"nervous system development","termid":"GO:0007399"},{"relation_name":"part_of","term_name":"chordate embryonic development","termid":"GO:0043009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural tube development","termid":"GO:0021915"}


id: MONDO:0032703
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short stature, amelogenesis imperfecta, and skeletal dysplasia with scoliosis","secondary_identifiers":["MEDGEN:1676818","UMLS:C5193055","OMIM:618363"],"synonyms":[{"name":"SHORT STATURE, AMELOGENESIS IMPERFECTA, AND SKELETAL DYSPLASIA WITH SCOLIOSIS","type":"related"},{"name":"SSASKS","type":"related"}],"termid":"MONDO:0032703","xrefs":{"Monarch":{"xref_id":"0032703"}}}


id: PBO:0001869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-specific cysteine protease, OTU family, Otu1","termid":"PBO:0001869"}


id: MOD:00161
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-glucosylated L-cysteine.","definition_xrefs":["PubMed:15279557","PubMed:5286858","Unimod:41#C","RESID:AA0152","PubMed:1145128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-glycosylated residue","termid":"MOD:00426"},{"relation_name":"is_a","term_name":"glucosylated residue","termid":"MOD:00433"},{"relation_name":"is_a","term_name":"monohexosylated (Hex1)","termid":"MOD:00761"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"},{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00764","MOD:00905"],"is_obsolete":false,"name":"S-glucosyl-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-[(beta-D-glucopyranosyl)sulfanyl]propanoic acid","type":"exact"},{"name":"CARBOHYD S-linked (Glc) cysteine","type":"exact"},{"name":"Hex","type":"related"},{"name":"Hexose","type":"related"},{"name":"S-(beta-D-glucopyranosyl)cysteine","type":"exact"},{"name":"S-glucosyl-L-cysteine","type":"exact"},{"name":"S-glycosyl-cysteine","type":"exact"},{"name":"SGlcCys","type":"exact"}],"termid":"MOD:00161"}


id: PBO:0077296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 38B","termid":"PBO:0077296"}


id: GO:0030826
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cGMP.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cGMP biosynthetic process (obsolete GO:0030826)","synonyms":[{"name":"regulation of cGMP anabolism","type":"exact"},{"name":"regulation of cGMP biosynthesis","type":"exact"},{"name":"regulation of cGMP formation","type":"exact"},{"name":"regulation of cGMP synthesis","type":"exact"}],"termid":"GO:0030826"}


id: GO:1902266
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of abscisic acid within a cell.","definition_xrefs":["GOC:TermGenie","PMID:23252460"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular chemical homeostasis","termid":"GO:0055082"},{"relation_name":"is_a","term_name":"abscisic acid homeostasis","termid":"GO:1902265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular abscisic acid homeostasis","synonyms":[{"name":"cellular 2-cis-abscisate homeostasis","type":"exact"},{"name":"cellular ABA homeostasis","type":"related"}],"termid":"GO:1902266"}


id: PBO:0027198
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cytoplasmic_microtubule_formation_from_nuclear_microtubules","termid":"PBO:0027198"}


id: MONDO:0004654
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pyomyositis (obsolete MONDO:0004654)","termid":"MONDO:0004654","xrefs":{"Monarch":{"xref_id":"0004654"}}}


id: GO:1902607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of large conductance calcium-activated potassium channel activity.","definition_xrefs":["GO_REF:0000059","GOC:TermGenie","PMID:23407708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of potassium ion transmembrane transporter activity","termid":"GO:1901017"},{"relation_name":"is_a","term_name":"negative regulation of cation channel activity","termid":"GO:2001258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"negative regulation of large conductance calcium-activated potassium channel activity","synonyms":[{"name":"down regulation of BK KCa channels","type":"exact"},{"name":"down regulation of BK calcium-activated potassium channel activity","type":"exact"},{"name":"down regulation of BK channel activity","type":"related"},{"name":"down regulation of large conductance KCa channels","type":"exact"},{"name":"down regulation of large conductance calcium-activated potassium channel activity","type":"exact"},{"name":"down-regulation of BK KCa channels","type":"exact"},{"name":"down-regulation of BK calcium-activated potassium channel activity","type":"exact"},{"name":"down-regulation of BK channel activity","type":"related"},{"name":"down-regulation of large conductance KCa channels","type":"exact"},{"name":"down-regulation of large conductance calcium-activated potassium channel activity","type":"exact"},{"name":"downregulation of BK KCa channels","type":"exact"},{"name":"downregulation of BK calcium-activated potassium channel activity","type":"exact"},{"name":"downregulation of BK channel activity","type":"related"},{"name":"downregulation of large conductance KCa channels","type":"exact"},{"name":"downregulation of large conductance calcium-activated potassium channel activity","type":"exact"},{"name":"inhibition of BK KCa channels","type":"narrow"},{"name":"inhibition of BK calcium-activated potassium channel activity","type":"narrow"},{"name":"inhibition of BK channel activity","type":"related"},{"name":"inhibition of large conductance KCa channels","type":"narrow"},{"name":"inhibition of large conductance calcium-activated potassium channel activity","type":"narrow"},{"name":"negative regulation of BK KCa channels","type":"exact"},{"name":"negative regulation of BK calcium-activated potassium channel activity","type":"exact"},{"name":"negative regulation of BK channel activity","type":"related"},{"name":"negative regulation of large conductance KCa channels","type":"exact"}],"termid":"GO:1902607"}


id: GO:0072297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the proximal tubule of the metanephric nephron acquires its identity.","definition_xrefs":["GOC:bf","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of proximal tubule identity","termid":"GO:0072082"},{"relation_name":"is_a","term_name":"specification of metanephric nephron tubule identity","termid":"GO:0072293"},{"relation_name":"part_of","term_name":"metanephric proximal tubule morphogenesis","termid":"GO:0072288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of metanephric proximal tubule identity","termid":"GO:0072297"}


id: GO:2000421
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of eosinophil extravasation.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular extravasation","termid":"GO:0002693"},{"relation_name":"is_a","term_name":"positive regulation of eosinophil migration","termid":"GO:2000418"},{"relation_name":"is_a","term_name":"regulation of eosinophil extravasation","termid":"GO:2000419"},{"relation_name":"positively_regulates","term_name":"eosinophil extravasation","termid":"GO:0072682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of eosinophil extravasation","termid":"GO:2000421"}


id: MONDO:0012121
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"otosclerosis","termid":"MONDO:0005349"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"otosclerosis 5","secondary_identifiers":["OMIM:608787","MEDGEN:325168","UMLS:C1837422","MESH:C563858","DOID:0060924"],"synonyms":[{"name":"OTSC5","type":"exact"},{"name":"otosclerosis 5","type":"exact"}],"termid":"MONDO:0012121","xrefs":{"Monarch":{"xref_id":"0012121"}}}


id: PBO:0001847
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Silencing DEfective","termid":"PBO:0001847"}


id: PBO:0077481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 201","termid":"PBO:0077481"}


id: PBO:0108917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sSTAG3 cohesin complex component like 3 (pseudogene)","termid":"PBO:0108917"}


id: GO:0045749
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of S phase of mitotic cell cycle activity.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of S phase of mitotic cell cycle (obsolete GO:0045749)","synonyms":[{"name":"down regulation of S phase of mitotic cell cycle","type":"exact"},{"name":"down-regulation of S phase of mitotic cell cycle","type":"exact"},{"name":"downregulation of S phase of mitotic cell cycle","type":"exact"},{"name":"inhibition of S phase of mitotic cell cycle","type":"narrow"},{"name":"negative regulation of S phase of mitotic cell cycle","type":"exact"},{"name":"negative regulation of S-phase of mitotic cell cycle","type":"exact"}],"termid":"GO:0045749"}


id: PBO:0066215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 22 pseudogene 11","termid":"PBO:0066215"}


id: GO:0140279
data:
  {"annotated_genes":["SJAG_03704","SJAG_04776","SJAG_05290","SJAG_00514","SJAG_04597","SJAG_01805","SJAG_03342","SJAG_03631","SJAG_04666","SJAG_01114","SJAG_01188","SJAG_04468","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102160],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905757"},{"annotations":[115278,106182,117704,104978,106846,113167,93562,77652,89616,92177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140281"},{"annotations":[92178,87281,94174],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905758"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mitotic division septum formation. Division septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis.","definition_xrefs":["PMID:22786806"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of division septum assembly","termid":"GO:0032955"},{"relation_name":"is_a","term_name":"regulation of mitotic cytokinetic process","termid":"GO:1903436"},{"relation_name":"regulates","term_name":"mitotic division septum assembly","termid":"GO:0140278"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_01114":null,"SJAG_01188":null,"SJAG_01805":null,"SJAG_03048":null,"SJAG_03342":null,"SJAG_03631":null,"SJAG_03704":null,"SJAG_04468":null,"SJAG_04597":null,"SJAG_04666":null,"SJAG_04776":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0000281"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0044085","GO:0000281"],"is_obsolete":false,"name":"regulation of mitotic division septum assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of division septum formation involved in mitotic cell cycle","type":"exact"},{"name":"regulation of formation of division septum involved in mitotic cell cycle","type":"exact"},{"name":"regulation of septin assembly and septum biosynthesis involved in mitotic cell cycle","type":"related"},{"name":"regulation of septin assembly and septum formation involved in mitotic cell cycle","type":"related"}],"termid":"GO:0140279","terms_by_termid":{"GO:0140281":null,"GO:1905757":null,"GO:1905758":null}}


id: MONDO:0957953
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"progeria","termid":"MONDO:0020732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019303"}],"interesting_parent_ids":["MONDO:0019303"],"is_obsolete":false,"name":"Garg-Mishra progeroid syndrome","secondary_identifiers":["UMLS:C5882717","OMIM:620601","MEDGEN:1847272"],"termid":"MONDO:0957953","xrefs":{"Monarch":{"xref_id":"0957953"}}}


id: MONDO:0019218
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Anomalies of bile acid synthesis are a group of sterol metabolism disorders due to enzyme deficiencies of bile acid synthesis (BAS) in infants, children and adults, with variable manifestations that include cholestasis, neurological disease, and fat malabsorption. Nine inborn errors have been described, 7 of which lead to liver cholestasis.","definition_xrefs":["Orphanet:79168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of amino acid and other organic acid metabolism","termid":"MONDO:0019189"},{"relation_name":"is_a","term_name":"sterol metabolism disorder","termid":"MONDO:0019256"},{"relation_name":"is_a","term_name":"disorder of organic acid metabolism","termid":"MONDO:0045022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"inborn disorder of bile acid synthesis","secondary_identifiers":["GTR:AN0923838","MEDGEN:98324","NANDO:2200506","NORD:854","UMLS:C0400973","GARD:18949"],"synonyms":[{"name":"Bile Acid Synthesis Disorders","type":"exact"},{"name":"disorder of bile acid synthesis","type":"related"},{"name":"inborn bile acid biosynthetic process disorder","type":"exact"},{"name":"inborn error of bile acid biosynthetic process","type":"exact"},{"name":"inborn errors of bile acid synthesis","type":"related"},{"name":"rare inborn error of bile acid biosynthetic process","type":"exact"}],"termid":"MONDO:0019218","xrefs":{"Monarch":{"xref_id":"0019218"}}}


id: FYPO:0004138
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in telomeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000873"},{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation at telomere during vegetative growth","termid":"FYPO:0005064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0002494","FYPO:0001985","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at telomere during vegetative growth","synonyms":[{"name":"increased histone H3 K9 dimethylation at telomere during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at telomere during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 dimethylation at telomere during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at telomere during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at telomere during vegetative growth","type":"exact"},{"name":"increased telomeric histone H3-K9 dimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0004138"}


id: PBO:0113748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDHC pseudogene 4","termid":"PBO:0113748"}


id: GO:0017063
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phosphatidylcholine + H2O = 2-acylglycerophosphocholine + a fatty acid anion.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphatidylserine-specific phospholipase A1 activity (obsolete GO:0017063)","synonyms":[{"name":"phosphatidylserine-specific phospholipase A1 activity","type":"exact"}],"termid":"GO:0017063"}


id: FYPO:0003464
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity is lower than normal during a cellular response to heat.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal alpha,alpha-trehalase activity","termid":"FYPO:0001479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0000661","FYPO:0000654","FYPO:0001985"],"is_obsolete":false,"name":"decreased alpha,alpha-trehalase activity during cellular response to heat","synonyms":[{"name":"decreased neutral trehalase activity during cellular response to heat","type":"exact"},{"name":"decreased trehalase activity during cellular response to heat","type":"broad"},{"name":"reduced alpha,alpha-trehalase activity during cellular response to heat","type":"exact"}],"termid":"FYPO:0003464"}


id: PBO:0088694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L32","termid":"PBO:0088694"}


id: GO:0035432
data:
  {"annotated_genes":["SJAG_04920"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89675],"is_not":false,"summary":null,"term":"GO:0035432"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of gluconate across a membrane by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"regulation of gluconate transmembrane transport","termid":"GO:0035430"},{"relation_name":"positively_regulates","term_name":"gluconate transmembrane transport","termid":"GO:0035429"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of gluconate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0032895"],"synonyms":[{"name":"activation of gluconate transport","type":"narrow"},{"name":"induction of gluconate transport","type":"narrow"},{"name":"positive regulation of gluconate membrane transport","type":"exact"},{"name":"positive regulation of gluconate transport","type":"related"},{"name":"stimulation of gluconate transport","type":"narrow"},{"name":"up regulation of gluconate transport","type":"exact"},{"name":"up-regulation of gluconate transport","type":"exact"},{"name":"upregulation of gluconate transport","type":"exact"}],"termid":"GO:0035432","terms_by_termid":{"GO:0035432":null}}


id: GO:0034230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of mature enkephalin, a pentapeptide hormone involved in regulating pain and nociception in the body by proteolytic processing of enkephalin propeptide.","definition_xrefs":["GOC:BHF","GOC:mah","PMID:8262946","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone processing","termid":"GO:0016486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"enkephalin processing","synonyms":[{"name":"enkephalin formation","type":"exact"},{"name":"peptide enkephalin formation","type":"exact"},{"name":"peptide enkephalin processing","type":"exact"}],"termid":"GO:0034230"}


id: GO:0018452
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-exo-hydroxycamphor + NAD+ = NADH + H+ + 2,5-diketocamphane.","definition_xrefs":["UM-BBD_reactionID:r0427"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"5-exo-hydroxycamphor dehydrogenase activity","secondary_identifiers":["MetaCyc:R542-RXN","EC:1.1.1.327","RHEA:32879"],"termid":"GO:0018452"}


id: PBO:0075126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNF related kinase","termid":"PBO:0075126"}


id: PBO:0048333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 44","termid":"PBO:0048333"}


id: PBO:0000047
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"evidence","termid":"PBO:0000047"}


id: PBO:0005580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hir protein binding region","termid":"PBO:0005580"}


id: GO:0031922
data:
  {"annotated_genes":["SJAG_02962","SJAG_03652","SJAG_02152","SJAG_03808"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118560,117282,89891,89890],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903091"}]},"cv_name":"biological_process","definition":"The directed movement of pyridoxamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Pyridoxamine, 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"},{"relation_name":"is_a","term_name":"vitamin B6 transport","termid":"GO:0031919"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02152":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"pyridoxamine transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031922","terms_by_termid":{"GO:1903091":null}}


id: GO:1900110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K9 dimethylation.","definition_xrefs":["GOC:vw","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H3-K9 dimethylation (obsolete GO:1900110)","synonyms":[{"name":"down regulation of histone H3 K9 dimethylation","type":"exact"},{"name":"down regulation of histone H3-K9 dimethylation","type":"exact"},{"name":"down regulation of histone lysine H3 K9 dimethylation","type":"exact"},{"name":"down-regulation of histone H3 K9 dimethylation","type":"exact"},{"name":"down-regulation of histone H3-K9 dimethylation","type":"exact"},{"name":"down-regulation of histone lysine H3 K9 dimethylation","type":"exact"},{"name":"downregulation of histone H3 K9 dimethylation","type":"exact"},{"name":"downregulation of histone H3-K9 dimethylation","type":"exact"},{"name":"downregulation of histone lysine H3 K9 dimethylation","type":"exact"},{"name":"inhibition of histone H3 K9 dimethylation","type":"narrow"},{"name":"inhibition of histone H3-K9 dimethylation","type":"narrow"},{"name":"inhibition of histone lysine H3 K9 dimethylation","type":"narrow"},{"name":"negative regulation of histone H3 K9 dimethylation","type":"exact"},{"name":"negative regulation of histone lysine H3 K9 dimethylation","type":"exact"}],"termid":"GO:1900110"}


id: PBO:0091135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces japonicus specific protein with 2 predicted transmembrane domains","termid":"PBO:0091135"}


id: GO:1901325
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antimycin A stimulus.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to antimycin A","termid":"GO:1901325"}


id: PBO:0071268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL24 pseudogene 2","termid":"PBO:0071268"}


id: PBO:0053992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1311","termid":"PBO:0053992"}


id: PBO:0078098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking protein particle complex subunit 6A","termid":"PBO:0078098"}


id: MONDO:0030979
data:
  {"annotated_genes":["SJAG_03758"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85311],"is_not":false,"summary":null,"term":"MONDO:0030979"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"EN1-related dorsoventral syndrome","termid":"MONDO:1040032"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03758":null},"genotype_count":0,"is_obsolete":false,"name":"ENDOVE syndrome, limb-brain type","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1782954","UMLS:C5543142","GARD:18561","OMIM:619218"],"synonyms":[{"name":"ENDOVESLB","type":"exact"},{"name":"Mesomelia of Lower Extremities With Hand, Foot, and Brain Anomalies","type":"exact"}],"termid":"MONDO:0030979","terms_by_termid":{"MONDO:0030979":null},"xrefs":{"Monarch":{"xref_id":"0030979"}}}


id: GO:0042343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of indole glucosinolates. Glucosinolates are sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan; indoles are biologically active substances based on 2,3-benzopyrrole, formed during the catabolism of tryptophan.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosinolate metabolic process","termid":"GO:0019760"},{"relation_name":"is_a","term_name":"indole-containing compound metabolic process","termid":"GO:0042430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"indole glucosinolate metabolic process","synonyms":[{"name":"indole glucosinolate metabolism","type":"exact"}],"termid":"GO:0042343"}


id: PBO:0113377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative deubiquitinating enzyme anchored to the outer mitochondrial membrane; probably not important for general mitochondrial functioning, but may perform a more specialized function at mitochondria","termid":"PBO:0113377"}


id: PR:Q9UT27
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pvg1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT27"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvyl transferase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8F11.10c","synonyms":[{"name":"PvGal synthesis protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pvg1","type":"exact"},{"name":"pyruvylated Gal-beta-1,3-epitope synthesis protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT27"}


id: GO:0035491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of the synthesis or release of any leukotriene following a stimulus as part of an inflammatory response.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukotriene production involved in inflammatory response","termid":"GO:0035490"},{"relation_name":"is_a","term_name":"positive regulation of inflammatory response","termid":"GO:0050729"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"leukotriene production involved in inflammatory response","termid":"GO:0002540"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of leukotriene production involved in inflammatory response","termid":"GO:0035491"}


id: SO:0000426
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The long terminal repeat found at the three-prime end of the sequence to be inserted into the host genome.","direct_ancestors":[{"relation_name":"is_a","term_name":"long_terminal_repeat","termid":"SO:0000286"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_LTR","synonyms":[{"name":"3' LTR","type":"exact"},{"name":"3' long terminal repeat","type":"exact"},{"name":"three prime LTR","type":"exact"}],"termid":"SO:0000426"}


id: MONDO:0015754
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cylindrical spirals myopathy (obsolete MONDO:0015754)","termid":"MONDO:0015754","xrefs":{"Monarch":{"xref_id":"0015754"}}}


id: PBO:0027615
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cut_following_normal_mitosis","termid":"PBO:0027615"}


id: PBO:0040918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMS1 pseudogene 22","termid":"PBO:0040918"}


id: MONDO:1010556
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spina bifida that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spina bifida, non-human animal","termid":"MONDO:1010047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spina bifida, dog","secondary_identifiers":["OMIA:000933-9615"],"termid":"MONDO:1010556","xrefs":{"Monarch":{"xref_id":"1010556"}}}


id: PBO:0030061
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_spindle_pole_body","termid":"PBO:0030061"}


id: FYPO:0008203
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 at the centromere inner repeat region is normal (i.e. indistinguishable from wild type).","direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K9 methylation at centromere inner repeat during vegetative growth","termid":"FYPO:0006683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth","termid":"FYPO:0008203"}


id: GO:0140874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of paraherquonin, a meroterpenoid with a unique, highly congested hexacyclic molecular architecture.","definition_xrefs":["PMID:27602587"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid biosynthetic process","termid":"GO:0016114"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"lactone biosynthetic process","termid":"GO:1901336"},{"relation_name":"is_a","term_name":"tertiary alcohol biosynthetic process","termid":"GO:1902645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"paraherquonin biosynthetic process","synonyms":[{"name":"paraherquonin anabolism","type":"exact"},{"name":"paraherquonin biosynthesis","type":"exact"},{"name":"paraherquonin formation","type":"exact"},{"name":"paraherquonin synthesis","type":"exact"}],"termid":"GO:0140874"}


id: GO:0035711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a T-helper 1 cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.","definition_xrefs":["CL:0000545","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD4-positive, alpha-beta T cell activation","termid":"GO:0035710"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T-helper 1 cell activation","synonyms":[{"name":"Th1 cell activation","type":"exact"}],"termid":"GO:0035711"}


id: GO:0018983
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving Z-phenylacetaldoxime, a member of the glucosinolate group of compounds, a class of natural products that are gaining increasing interest as cancer-preventing agents and crop protectants.","definition_xrefs":["UM-BBD_pathwayID:pao"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldoxime metabolic process","termid":"GO:0019330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Z-phenylacetaldoxime metabolic process","synonyms":[{"name":"Z-phenylacetaldoxime metabolism","type":"exact"}],"termid":"GO:0018983"}


id: MOD:00494
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label","definition_xrefs":["PubMed:12185208","Unimod:123#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"},{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"N-iodoacetyl, p-chlorobenzyl-12C6-glucamine","synonyms":[{"name":"ICAT-H","type":"related"},{"name":"N-iodoacetyl, p-chlorobenzyl-12C6-glucamine","type":"related"}],"termid":"MOD:00494"}


id: FYPO:0006700
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of CDP measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular pentose phosphate level","termid":"FYPO:0006705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular CDP level","synonyms":[{"name":"decreased cellular CDP level during mitotic cell cycle","type":"related"},{"name":"decreased cellular CDP level during vegetative growth","type":"exact"},{"name":"reduced cellular CDP level","type":"exact"}],"termid":"FYPO:0006700"}


id: PBO:0003276
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.5.4.9","termid":"PBO:0003276"}


id: MONDO:0001632
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Vascular diseases characterized by thickening and hardening of the walls of arteries inside the skull. There are three subtypes: (1) atherosclerosis with fatty deposits in the arterial intima; (2) Monckeberg's sclerosis with calcium deposits in the media and (3) arteriolosclerosis involving the small caliber arteries. Clinical signs include headache; confusion; transient blindness (amaurosis fugax); speech impairment; and hemiparesis.","definition_xrefs":["MESH:D002537"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arteriosclerosis disorder","termid":"MONDO:0002277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intracranial arteriosclerosis","secondary_identifiers":["UMLS:C0007771","MEDGEN:3319","DOID:13097"],"termid":"MONDO:0001632","xrefs":{"Monarch":{"xref_id":"0001632"}}}


id: PBO:0051963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITPRIP like 1","termid":"PBO:0051963"}


id: FYPO:0003380
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the frequency of occurrence of the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased frequency of meiosis","termid":"FYPO:0000476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased frequency of meiosis I","synonyms":[{"name":"decreased frequency of first meiotic nuclear division","type":"exact"},{"name":"decreased meiosis I","type":"exact"},{"name":"meiosis I: decreased frequency","type":"exact"},{"name":"reduced frequency of meiosis I","type":"exact"}],"termid":"FYPO:0003380"}


id: GO:1900758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of D-amino-acid oxidase activity.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of D-amino-acid oxidase activity (obsolete GO:1900758)","synonyms":[{"name":"down regulation of D-amino-acid oxidase activity","type":"exact"},{"name":"down regulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"down regulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"down regulation of new yellow enzyme","type":"related"},{"name":"down-regulation of D-amino-acid oxidase activity","type":"exact"},{"name":"down-regulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"down-regulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"down-regulation of new yellow enzyme","type":"related"},{"name":"downregulation of D-amino-acid oxidase activity","type":"exact"},{"name":"downregulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"downregulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"downregulation of new yellow enzyme","type":"related"},{"name":"inhibition of D-amino-acid oxidase activity","type":"narrow"},{"name":"inhibition of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"inhibition of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"inhibition of new yellow enzyme","type":"related"},{"name":"negative regulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"negative regulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"negative regulation of new yellow enzyme","type":"related"}],"termid":"GO:1900758"}


id: GO:0039619
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=4 symmetry. The T=4 capsid is composed of 12 pentameric and 30 hexameric capsomeres.","definition_xrefs":["VZ:808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"T=4 icosahedral viral capsid","termid":"GO:0039619"}


id: MONDO:1010656
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polycythemia that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polycythemia, non-human animal","termid":"MONDO:1010078"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycythemia, cattle","secondary_identifiers":["OMIA:000809-9913"],"termid":"MONDO:1010656","xrefs":{"Monarch":{"xref_id":"1010656"}}}


id: GO:0050634
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: isovaleryl-CoA + 3 malonyl-CoA = 4 CoASH + 3 CO2 + 3-methyl-1-(2,4,6-trihydroxyphenyl)butan-1-one.","definition_xrefs":["EC:2.3.1.156","MetaCyc:2.3.1.156-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"phloroisovalerophenone synthase activity","secondary_identifiers":["RHEA:23572"],"synonyms":[{"name":"3-methyl-1-(trihydroxyphenyl)butan-1-one synthase activity","type":"related"},{"name":"isovaleryl-CoA:malonyl-CoA acyltransferase activity","type":"related"},{"name":"valerophenone synthase activity","type":"related"}],"termid":"GO:0050634"}


id: FYPO:0009110
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell growth phenotype in which cell population growth is normal after short incubation in hydroxyurea.","direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002060","FYPO:0002058","FYPO:0002057","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"normal vegetative cell population growth after short incubation in hydroxyurea","secondary_identifiers":["PMID:37200372"],"synonyms":[{"name":"normal vegetative cell population growth after acute hydroxyurea treatment","type":"exact"}],"termid":"FYPO:0009110"}


id: MONDO:0000934
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign smooth muscle neoplasm arising from the larynx. It is characterized by the presence of spindle cells with cigar-shaped nuclei, interlacing fascicles, and a whorled pattern.","definition_xrefs":["NCIT:C6027"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leiomyoma","termid":"MONDO:0001572"},{"relation_name":"is_a","term_name":"benign laryngeal neoplasm","termid":"MONDO:0002354"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laryngeal leiomyoma","secondary_identifiers":["MEDGEN:232691","UMLS:C1334370","DOID:10070"],"synonyms":[{"name":"laryngeal leiomyoma","type":"exact"},{"name":"larynx leiomyoma","type":"exact"},{"name":"leiomyoma of larynx","type":"exact"},{"name":"leiomyoma of the larynx","type":"exact"}],"termid":"MONDO:0000934","xrefs":{"Monarch":{"xref_id":"0000934"}}}


id: FYPO:0004335
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to another does not occur during a cellular response to hydrogen peroxide. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PMID:22139357","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein-protein interaction during cellular response to rapamycin","termid":"FYPO:0003425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707","FYPO:0000702"],"is_obsolete":false,"name":"abolished protein-protein interaction during cellular response to hydrogen peroxide","synonyms":[{"name":"abolished protein binding cellular response to hydrogen peroxide","type":"exact"},{"name":"abolished protein-protein interaction during cellular response to H2O2","type":"exact"},{"name":"protein-protein interaction abolished during cellular response to hydrogen peroxide","type":"exact"}],"termid":"FYPO:0004335"}


id: PR:O94435
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug35 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 35 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22H12.01c","synonyms":[{"name":"Spom972h-mug35","type":"exact"}],"termid":"PR:O94435"}


id: GO:0035544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of assembly of the SNARE complex. The SNARE complex is a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers.","definition_xrefs":["GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"negative regulation of vesicle fusion","termid":"GO:0031339"},{"relation_name":"is_a","term_name":"regulation of SNARE complex assembly","termid":"GO:0035542"},{"relation_name":"negatively_regulates","term_name":"SNARE complex assembly","termid":"GO:0035493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0044085","GO:0061024","GO:0065003","GO:0006810"],"is_obsolete":false,"name":"negative regulation of SNARE complex assembly","termid":"GO:0035544"}


id: GO:0010528
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transposition. Transposition results in the movement of discrete segments of DNA between nonhomologous sites.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transposition (obsolete GO:0010528)","termid":"GO:0010528"}


id: PBO:0031529
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_DNA-1,N6-ethenoadenine_N-glycosylase_activity","termid":"PBO:0031529"}


id: GO:1901118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cephamycin C.","definition_xrefs":["GOC:yaf","GOC:TermGenie","UniPathway:UPA00183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-lactam antibiotic biosynthetic process","termid":"GO:0030654"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"cephamycin C metabolic process","termid":"GO:1901116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0044281"],"is_obsolete":false,"name":"cephamycin C biosynthetic process","synonyms":[{"name":"cephamycin C anabolism","type":"exact"},{"name":"cephamycin C biosynthesis","type":"exact"},{"name":"cephamycin C formation","type":"exact"},{"name":"cephamycin C synthesis","type":"exact"}],"termid":"GO:1901118"}


id: FYPO:0004261
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal during G2 phase of the mitotic cell cycle and during a cellular response to ionizing radiation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during cellular response to ionizing radiation","termid":"FYPO:0002470"},{"relation_name":"is_a","term_name":"decreased protein phosphorylation during mitotic G2 phase","termid":"FYPO:0004111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein phosphorylation during mitotic G2 phase during cellular response to ionizing radiation","synonyms":[{"name":"decreased protein phosphorylation during cellular response to ionizing radiation during G2 phase of mitotic cell cycle","type":"exact"},{"name":"decreased protein phosphorylation during cellular response to ionizing radiation during mitotic G2 phase","type":"exact"},{"name":"decreased protein phosphorylation during mitotic G2 phase during cellular response to IR","type":"exact"},{"name":"decreased protein phosphorylation during mitotic G2 phase during cellular response to ionizing radiation during vegetative growth","type":"exact"},{"name":"reduced protein phosphorylation during mitotic G2 phase during cellular response to IR","type":"exact"},{"name":"reduced protein phosphorylation during mitotic G2 phase during cellular response to ionizing radiation","type":"exact"}],"termid":"FYPO:0004261"}


id: PBO:0070775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 5","termid":"PBO:0070775"}


id: GO:0055105
data:
  {"annotated_genes":["SJAG_02485","SJAG_04699","SJAG_01515"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114436],"is_not":false,"summary":null,"term":"GO:0055105"},{"annotations":[115367,98480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990948"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of a ubiquitin-protein transferase.","definition_xrefs":["GOC:rl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"},{"relation_name":"is_a","term_name":"ubiquitin-protein transferase regulator activity","termid":"GO:0055106"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01515":null,"SJAG_02485":null,"SJAG_04699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0004857","GO:0098772","GO:0030234","GO:0140678","GO:0003674"],"is_obsolete":false,"name":"ubiquitin-protein transferase inhibitor activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0055105","terms_by_termid":{"GO:0055105":null,"GO:1990948":null}}


id: MONDO:1012017
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"atopy, non-human animal","termid":"MONDO:1011733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atopy, dog","secondary_identifiers":["OMIA:000082-9615"],"termid":"MONDO:1012017","xrefs":{"Monarch":{"xref_id":"1012017"}}}


id: GO:0008572
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. The hydrolysis of ATP required for the ATP-dependent assembly of nucleosome cores, in decondensation of sperm chromatin and in other histone-involving processes.","definition_xrefs":["EC:3.6.4.11"],"gene_count":0,"genotype_count":0,"name":"obsolete nucleoplasmin ATPase activity (obsolete GO:0008572)","synonyms":[{"name":"nucleoplasmin ATPase activity","type":"exact"}],"termid":"GO:0008572"}


id: PBO:0071503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 6","termid":"PBO:0071503"}


id: PBO:0086412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GPI-anchored protein; localized to the cell wall; involved in foam formation in sake mash by conferring hydrophobicity to the cell surface","termid":"PBO:0086412"}


id: GO:0051943
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of the directed movement of amino acid neurotransmitters into a neuron or glial cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neurotransmitter uptake","termid":"GO:0051582"},{"relation_name":"is_a","term_name":"regulation of amino acid uptake involved in synaptic transmission","termid":"GO:0051941"},{"relation_name":"is_a","term_name":"positive regulation of amino acid transport","termid":"GO:0051957"},{"relation_name":"positively_regulates","term_name":"amino acid neurotransmitter reuptake","termid":"GO:0051933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of amino acid uptake involved in synaptic transmission","synonyms":[{"name":"activation of amino acid uptake during transmission of nerve impulse","type":"related"},{"name":"positive regulation of amino acid neurotransmitter reuptake","type":"exact"},{"name":"positive regulation of amino acid neurotransmitter uptake","type":"exact"},{"name":"stimulation of amino acid uptake during transmission of nerve impulse","type":"narrow"},{"name":"up regulation of amino acid uptake during transmission of nerve impulse","type":"related"},{"name":"up-regulation of amino acid uptake during transmission of nerve impulse","type":"related"},{"name":"upregulation of amino acid uptake during transmission of nerve impulse","type":"related"}],"termid":"GO:0051943"}


id: MONDO:0014891
data:
  {"annotated_genes":["SJAG_02208","SJAG_02330"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85880,85881],"is_not":false,"summary":null,"term":"MONDO:0014891"}]},"cv_name":"mondo","definition":"Any familial juvenile hyperuricemic nephropathy in which the cause of the disease is a mutation in the SEC61A1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial juvenile hyperuricemic nephropathy","termid":"MONDO:0000608"},{"relation_name":"is_a","term_name":"SEC61A1 deficiency","termid":"MONDO:0100337"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02208":null,"SJAG_02330":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"hyperuricemic nephropathy, familial juvenile type 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4310741","MEDGEN:934708","OMIM:617056"],"synonyms":[{"name":"ADTKD-SEC61A1","type":"exact"},{"name":"HNFJ4","type":"exact"},{"name":"SEC61A1 familial juvenile hyperuricemic nephropathy","type":"exact"},{"name":"SEC61A1-related autosomal dominant tubulointerstitial kidney disease","type":"exact"},{"name":"familial juvenile hyperuricemic nephropathy caused by mutation in SEC61A1","type":"exact"},{"name":"hyperuricemic NEPHROPATHY, familial juvenile, 4","type":"related"},{"name":"hyperuricemic nephropathy, familial juvenile, 4","type":"exact"},{"name":"hyperuricemic nephropathy, familial juvenile, type 4","type":"exact"},{"name":"tubulointerstitial kidney disease, autosomal dominant, 5","type":"exact"}],"termid":"MONDO:0014891","terms_by_termid":{"MONDO:0014891":null},"xrefs":{"Monarch":{"xref_id":"0014891"}}}


id: MONDO:0009369
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Non-immune hydrops fetalis (NIHF), a form of HF, is a severe fetal condition defined as the excessive accumulation of fetal fluid within the fetal extravascular compartments and body cavities, and is the end-stage of a wide variety of disorders.","definition_xrefs":["Orphanet:363999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrops fetalis","termid":"MONDO:0015193"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-immune hydrops fetalis","secondary_identifiers":["ICD9:778.0","OMIM:236750","UMLS:C0455988","icd11.foundation:1182287637","GARD:17580","SCTID:276509008","MEDGEN:105327","NCIT:C111905"],"synonyms":[{"name":"Haemoglobin H hydrops fetalis syndrome","type":"related"},{"name":"Hemoglobin H hydrops fetalis syndrome","type":"related"},{"name":"NIHF","type":"related"},{"name":"hydrops fetalis, Alpha-thalassemia-related","type":"related"},{"name":"hydrops fetalis, nonimmune","type":"related"},{"name":"non-immune HF","type":"exact"},{"name":"non-immune fetal edema","type":"exact"},{"name":"non-immune fetal hydrops","type":"exact"},{"name":"non-immune foetal hydrops","type":"exact"},{"name":"non-immune foetal oedema","type":"exact"}],"termid":"MONDO:0009369","xrefs":{"Monarch":{"xref_id":"0009369"}}}


id: PR:Q9P7R8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gea1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7R8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C211.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC211.03c","synonyms":[{"name":"Spom972h-gea1","type":"exact"}],"termid":"PR:Q9P7R8"}


id: MONDO:0018787
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genetic cerebral small vessel disease (obsolete MONDO:0018787)","secondary_identifiers":["Orphanet:477754"],"termid":"MONDO:0018787","xrefs":{"Monarch":{"xref_id":"0018787"}}}


id: PBO:0068072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 377","termid":"PBO:0068072"}


id: PBO:0053602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 632","termid":"PBO:0053602"}


id: GO:0003233
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the bulbus arteriosus is generated and organized. The bulbus arteriosus is an elastic cardiac chamber.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac chamber morphogenesis","termid":"GO:0003206"},{"relation_name":"part_of","term_name":"bulbus arteriosus development","termid":"GO:0003232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bulbus arteriosus morphogenesis","termid":"GO:0003233"}


id: MONDO:0009673
data:
  {"annotated_genes":["SJAG_03894"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86198],"is_not":false,"summary":null,"term":"MONDO:0009673"}]},"cv_name":"mondo","definition":"Proximal spinal muscular atrophy type 2 (SMA2) is a chronic infantile form of proximal spinal muscular atrophy characterized by muscle weakness and hypotonia resulting from the degeneration and loss of the lower motor neurons in the spinal cord and the brain stem nuclei.","definition_xrefs":["Orphanet:83418"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proximal spinal muscular atrophy","termid":"MONDO:0019079"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03894":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0005559"],"is_obsolete":false,"name":"spinal muscular atrophy, type II","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:128212001","UMLS:C0393538","DOID:0050530","ICD9:335.19","NANDO:1200005","OMIM:253550","icd11.foundation:867148636","GARD:4945","MEDGEN:95975","MESH:C536879"],"synonyms":[{"name":"Dubowitz disease","type":"related"},{"name":"Intermediate spinal muscular atrophy","type":"exact"},{"name":"SMA II","type":"related"},{"name":"SMA type 2","type":"exact"},{"name":"SMA type II","type":"exact"},{"name":"SMA-II","type":"exact"},{"name":"SMA2","type":"exact"},{"name":"Sma 2","type":"related"},{"name":"chronic infantile spinal muscular atrophy","type":"exact"},{"name":"chronic spinal muscular atrophy","type":"exact"},{"name":"muscular atrophy, spinal, Intermediate type","type":"related"},{"name":"muscular atrophy, spinal, infantile chronic form","type":"exact"},{"name":"muscular atrophy, spinal, intermediate type","type":"exact"},{"name":"proximal spinal muscular atrophy type 2","type":"related"},{"name":"spinal muscular atrophy type 2","type":"related"},{"name":"spinal muscular atrophy type II","type":"related"},{"name":"spinal muscular atrophy, type 2","type":"related"},{"name":"spinal muscular atrophy, type II","type":"exact"},{"name":"spinal muscular atrophy-2","type":"exact"}],"termid":"MONDO:0009673","terms_by_termid":{"MONDO:0009673":null},"xrefs":{"Monarch":{"xref_id":"0009673"}}}


id: PBO:0084009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycogenin glucosyltransferase; self-glucosylating initiator of glycogen synthesis, also glucosylates n-dodecyl-beta-D-maltoside; similar to mammalian glycogenin; GLG2 has a paralog, GLG1, that arose from the whole genome duplication","termid":"PBO:0084009"}


id: PBO:0062674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 14 subfamily A member 16","termid":"PBO:0062674"}


id: GO:0044011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which microorganisms of the same species attach to and grow on an inanimate surface such as a rock or pipe, and produce extracellular polymers that facilitate attachment and matrix formation, resulting in an alteration in the phenotype of the organisms with respect to growth rate and gene transcription.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single-species submerged biofilm formation","termid":"GO:0090609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"single-species biofilm formation on inanimate substrate","termid":"GO:0044011"}


id: PBO:0113024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calcium/H+ antiporter localized to endoplasmic reticulum membrane; member of calcium exchanger (CAX) family; targeted to vacuole via AP-3 pathway","termid":"PBO:0113024"}


id: FYPO:0004921
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which positive regulation of a protein kinase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:11402029","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal regulation of catalytic activity","termid":"FYPO:0004920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal positive regulation of protein kinase activity","synonyms":[{"name":"normal activation of protein kinase activity","type":"narrow"},{"name":"normal positive regulation of protein kinase activity during mitotic cell cycle","type":"related"},{"name":"normal positive regulation of protein kinase activity during vegetative growth","type":"exact"}],"termid":"FYPO:0004921"}


id: MONDO:0014060
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"progressive retinal dystrophy due to retinol transport defect","secondary_identifiers":["UMLS:C3554593","ICD10CM:H35.5","Orphanet:352718","GARD:17529","OMIM:615147","MEDGEN:767507"],"synonyms":[{"name":"RDCCAS","type":"related"},{"name":"retinal dystrophy, iris coloboma, and comedogenic acne syndrome","type":"related"},{"name":"retinol dystrophy-iris coloboma-comedogenic acne syndrome","type":"exact"}],"termid":"MONDO:0014060","xrefs":{"Monarch":{"xref_id":"0014060"}}}


id: PBO:0090202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Thi1","termid":"PBO:0090202"}


id: PBO:0013744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFS family membrane transporter Mfs2 (predicted)","termid":"PBO:0013744"}


id: GO:0071076
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The enzymatic addition of a sequence of uridylyl residues at the 3' end of an RNA molecule.","definition_xrefs":["GOC:vw","PMID:19430462"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA 3' uridylation (obsolete GO:0071076)","termid":"GO:0071076"}


id: MONDO:0006248
data:
  {"annotated_genes":["SJAG_01156"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86877],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032747"}]},"cv_name":"mondo","definition":"A gestational trophoblastic disorder characterized by marked enlargement of the chorionic villi, hyperplasia of the villous trophoblastic cells and hydropic changes.","definition_xrefs":["NCIT:C3110"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trophoblastic neoplasm","termid":"MONDO:0002872"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"placenta neoplasm","termid":"MONDO:0021218"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01156":null},"genotype_count":0,"is_obsolete":false,"name":"hydatidiform mole","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:9329","MedDRA:10020481","ONCOTREE:MP","EFO:1000298","GARD:10263","Orphanet:99927","MESH:D006828","icd11.foundation:946166369","OMIMPS:231090","SCTID:44782008","UMLS:C0020217","ICDO:9100/0","ICD9:631"],"synonyms":[{"name":"HYDM","type":"related"},{"name":"hydatid mole","type":"exact"},{"name":"hydatidiform mole","type":"exact"},{"name":"hydatidiform mole, recurrent","type":"related"},{"name":"molar pregnancy","type":"exact"}],"termid":"MONDO:0006248","terms_by_termid":{"MONDO:0032747":null},"xrefs":{"Monarch":{"xref_id":"0006248"}}}


id: GO:0106350
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2E,6E)-farnesyl diphosphate + 5 isopentenyl diphosphate = 5 diphosphate + all-trans-octaprenyl diphosphate.","definition_xrefs":["PMID:3519603","PMID:8037730","RHEA:27798"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyl diphosphate synthase activity","termid":"GO:0120531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016765","GO:0003824"],"is_obsolete":false,"name":"all-trans-octaprenyl-diphosphate synthase activity","secondary_identifiers":["EC:2.5.1.90"],"synonyms":[{"name":"octaprenyl pyrophosphate synthase activity","type":"exact"},{"name":"terpenyl pyrophosphate synthetase activity","type":"broad"},{"name":"trans-heptaprenyltranstransferase activity","type":"exact"},{"name":"trans-prenyltransferase activity","type":"broad"}],"termid":"GO:0106350"}


id: MONDO:0100562
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mild microcytic anemia caused by biallelic variation in the HBA2 gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"monogenic alpha thalassemia spectrum","termid":"MONDO:0100565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"HBA2-related alpha thalassemia spectrum","synonyms":[{"name":"alpha-thalassemia trait","type":"related"}],"termid":"MONDO:0100562","xrefs":{"Monarch":{"xref_id":"0100562"}}}


id: PBO:0056732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesoderm specific transcript pseudogene 1","termid":"PBO:0056732"}


id: GO:0035869
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A region of the cilium between the basal body and proximal segment that is characterized by Y-shaped assemblages that connect axonemal microtubules to the ciliary membrane. The ciliary transition zone appears to function as a gate that controls ciliary membrane composition and separates the cytosol from the ciliary plasm.","definition_xrefs":["GOC:kmv","GOC:cilia","PMID:21422230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ciliary transition zone","synonyms":[{"name":"cilial transition zone","type":"exact"},{"name":"cilium transition zone","type":"exact"},{"name":"connecting cilium","type":"related"}],"termid":"GO:0035869"}


id: FYPO:0006373
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in one or more heterochromatin islands occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah","PMID:29214404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000873"},{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation at heterochromatin island during vegetative growth","termid":"FYPO:0003746"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at heterochromatin island during vegetative growth","synonyms":[{"name":"increased histone H3 K9 dimethylation at heterochromatin island during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at heterochromatin island during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 dimethylation at heterochromatin island during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at heterochromatin island during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at heterochromatin island during vegetative growth","type":"exact"}],"termid":"FYPO:0006373"}


id: PATO:0001540
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content.","definition_xrefs":["TO:TO"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylose composition","termid":"PATO:0001539"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutinous","termid":"PATO:0001540"}


id: PBO:0051022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin like growth factor binding protein 2","termid":"PBO:0051022"}


id: PBO:0050508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox C8","termid":"PBO:0050508"}


id: FYPO:0003183
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing phleomycin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002057","FYPO:0002060","FYPO:0002058","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on phleomycin","synonyms":[{"name":"normal cell population growth in presence of phleomycin","type":"exact"},{"name":"normal cell population growth on phleomycin","type":"exact"},{"name":"normal cellular response to phleomycin","type":"related"},{"name":"normal vegetative cell population growth on phleomycin","type":"exact"}],"termid":"FYPO:0003183"}


id: GO:0018400
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-proline to form 3-hydroxy-L-proline; catalyzed by procollagen-proline 3-dioxygenase.","definition_xrefs":["RESID:AA0029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"peptidyl-proline hydroxylation","termid":"GO:0019511"},{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"peptidyl-proline hydroxylation to 3-hydroxy-L-proline","termid":"GO:0018400"}


id: PBO:0043972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin zeta pseudogene 2","termid":"PBO:0043972"}


id: MONDO:0054748
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Fanconi anemia","termid":"MONDO:0019391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0021190"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005066","MONDO:0021190","MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"Fanconi anemia, complementation group S","secondary_identifiers":["GARD:16264","UMLS:C4554406","OMIM:617883","MEDGEN:1632414","DOID:0060979"],"synonyms":[{"name":"FANCS","type":"related"},{"name":"Fanconi anemia, complementation GROUP S","type":"related"},{"name":"Fanconi anemia, complementation group S","type":"exact"}],"termid":"MONDO:0054748","xrefs":{"Monarch":{"xref_id":"0054748"}}}


id: PBO:0051271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa joining 2","termid":"PBO:0051271"}


id: PBO:0108546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage factor complex RNA-binding protein Rna15","termid":"PBO:0108546"}


id: GO:1903260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a mating projection tip.","definition_xrefs":["PMID:11952834","GO_REF:0000087","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cell tip","termid":"GO:1990151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to mating projection tip","synonyms":[{"name":"protein localisation in mating projection tip","type":"exact"},{"name":"protein localisation to mating projection tip","type":"exact"},{"name":"protein localization in mating projection tip","type":"exact"},{"name":"protein localization to conjugation tube tip","type":"narrow"},{"name":"protein localization to shmoo tip","type":"narrow"}],"termid":"GO:1903260"}


id: GO:0010087
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana.","definition_xrefs":["GOC:mtg_sensu","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phloem or xylem histogenesis","synonyms":[{"name":"vascular tissue development","type":"broad"},{"name":"vascular tissue histogenesis","type":"exact"}],"termid":"GO:0010087"}


id: FYECO:0000453
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"cells are first grown in medium containing trichostatin A, this medium is then replaced with medium containing no trichostatin A .","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping growth medium","termid":"FYECO:0000009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recovery after trichostatin A treatment","termid":"FYECO:0000453"}


id: PBO:0088687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ergothioneine biosynthesis protein Egt1","termid":"PBO:0088687"}


id: PBO:0052985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L antigen family member 3 pseudogene 1","termid":"PBO:0052985"}


id: FYPO:0005296
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Rad52 (also called Rad22) accumulates is greater than normal during S phase of the mitotic cell cycle.","definition_xrefs":["PMID:18045993","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased number of Rad52 foci during vegetative growth","termid":"FYPO:0000972"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased number of Rad52 foci during mitotic S phase","synonyms":[{"name":"increased number of Rad22 foci during mitotic S phase","type":"exact"},{"name":"increased number of Rad52 foci during S phase of mitotic cell cycle","type":"exact"},{"name":"increased number of Rad52 foci during mitotic S phase during vegetative growth","type":"exact"}],"termid":"FYPO:0005296"}


id: GO:0018251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The oxidation of the C alpha-C beta bond of peptidyl-tyrosine to form peptidyl-dehydrotyrosine coupled with cyclization of neighboring residues.","definition_xrefs":["RESID:AA0183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-tyrosine modification","termid":"GO:0018212"},{"relation_name":"is_a","term_name":"protein dehydration","termid":"GO:0018249"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-tyrosine dehydrogenation","termid":"GO:0018251"}


id: MONDO:0002623
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An osteosarcoma occurring in childhood.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"childhood malignant neoplasm","termid":"MONDO:0006517"},{"relation_name":"is_a","term_name":"osteosarcoma","termid":"MONDO:0009807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pediatric osteosarcoma","secondary_identifiers":["DOID:3361","NCIT:C6585","MEDGEN:272464","UMLS:C1332986","NANDO:2200048"],"synonyms":[{"name":"childhood osteogenic sarcoma","type":"exact"},{"name":"childhood osteosarcoma","type":"exact"},{"name":"childhood osteosarcoma (disease)","type":"exact"},{"name":"osteosarcoma","type":"broad"},{"name":"osteosarcoma (disease) of childhood","type":"exact"},{"name":"paediatric osteosarcoma (disease)","type":"exact"},{"name":"pediatric osteosarcoma","type":"exact"},{"name":"pediatric osteosarcoma (disease)","type":"exact"}],"termid":"MONDO:0002623","xrefs":{"Monarch":{"xref_id":"0002623"}}}


id: PBO:0066844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 144","termid":"PBO:0066844"}


id: PATO:0000684
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000684 absolute incidence value (obsolete PATO:0000684)","termid":"PATO:0000684"}


id: GO:0043731
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the oxidative decarboxylation of 6-hydroxynicotinate to 2,5-dihydroxypyridine, dependent on O2, NADH +H+ and FAD.","definition_xrefs":["GOC:jl","PMID:10091591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"6-hydroxynicotinate 3-monooxygenase activity","secondary_identifiers":["EC:1.14.13.114","MetaCyc:RXN-7573","RHEA:27333"],"termid":"GO:0043731"}


id: GO:0048766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a protrusion or bulge is formed at the site of plant root hair outgrowth.","definition_xrefs":["GOC:jid","PMID:12468740"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"part_of","term_name":"root hair cell differentiation","termid":"GO:0048765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root hair initiation","termid":"GO:0048766"}


id: PBO:0074459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingomyelin phosphodiesterase 4","termid":"PBO:0074459"}


id: GO:0018876
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving benzonitrile. Benzonitrile is used as a solvent and chemical intermediate in the pharmaceutical, dyestuffs and rubber industries. It is highly toxic and harmful in contact with skin.","definition_xrefs":["UM-BBD_pathwayID:bzn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"nitrile metabolic process","termid":"GO:0050898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"benzonitrile metabolic process","synonyms":[{"name":"benzonitrile metabolism","type":"exact"}],"termid":"GO:0018876"}


id: PBO:0042335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD63 antisense RNA 1","termid":"PBO:0042335"}


id: GO:0004409
data:
  {"annotated_genes":["SJAG_01574"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[63942],"is_not":false,"summary":null,"term":"GO:0004409"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (-)-homoisocitrate = cis-homoaconitate + H2O.","definition_xrefs":["EC:4.2.1.36","RHEA:15485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"homoaconitate hydratase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["MetaCyc:HOMOACONITATE-HYDRATASE-RXN","KEGG_REACTION:R04371"],"synonyms":[{"name":"(1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate hydro-lyase [(Z)-but-1-ene-1,2,4-tricarboxylate-forming]","type":"related"},{"name":"2-hydroxybutane-1,2,4-tricarboxylate hydro-lyase activity","type":"related"},{"name":"HACN activity","type":"related"},{"name":"Lys4","type":"related"},{"name":"LysF","type":"related"},{"name":"cis-homoaconitase activity","type":"related"},{"name":"homoaconitase activity","type":"related"}],"termid":"GO:0004409","terms_by_termid":{"GO:0004409":null}}


id: GO:0019347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of GDP-alpha-D-mannosylchitobiosyldiphosphodolichol, a substance composed of mannosylchitobiosyldiphosphodolichol in glycosidic linkage with guanosine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid biosynthetic process","termid":"GO:0008654"},{"relation_name":"is_a","term_name":"glycolipid biosynthetic process","termid":"GO:0009247"},{"relation_name":"is_a","term_name":"terpenoid biosynthetic process","termid":"GO:0016114"},{"relation_name":"is_a","term_name":"GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolic process","termid":"GO:0046376"},{"relation_name":"is_a","term_name":"nucleoside phosphate biosynthetic process","termid":"GO:1901293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthetic process","secondary_identifiers":["MetaCyc:MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS"],"synonyms":[{"name":"GDP-alpha-D-mannosylchitobiosyldiphosphodolichol anabolism","type":"exact"},{"name":"GDP-alpha-D-mannosylchitobiosyldiphosphodolichol biosynthesis","type":"exact"},{"name":"GDP-alpha-D-mannosylchitobiosyldiphosphodolichol formation","type":"exact"},{"name":"GDP-alpha-D-mannosylchitobiosyldiphosphodolichol synthesis","type":"exact"}],"termid":"GO:0019347"}


id: PBO:0090145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pex16 family peroxisome import protein Pex16","termid":"PBO:0090145"}


id: PBO:0085433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; TPO3 has a paralog, TPO2, that arose from the whole genome duplication","termid":"PBO:0085433"}


id: PBO:0047058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 118 member B","termid":"PBO:0047058"}


id: GO:0032903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of nerve growth factor (NGF).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotrophin production","termid":"GO:0032899"},{"relation_name":"regulates","term_name":"nerve growth factor production","termid":"GO:0032902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of nerve growth factor production","synonyms":[{"name":"regulation of NGF production","type":"exact"},{"name":"regulation of beta-nerve growth factor production","type":"exact"}],"termid":"GO:0032903"}


id: PR:O42858
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A retinoblastoma-binding protein 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01043","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"set1 complex component swd1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H3.05c","secondary_identifiers":["UniProtKB:O42858"],"synonyms":[{"name":"COMPASS component swd1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Set1C component swd1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-RBBP5","type":"exact"},{"name":"complex proteins associated with set1 protein swd1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42858"}


id: GO:0086100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by endothelin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","PMID:10977869","GOC:bf","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"endothelin receptor signaling pathway","synonyms":[{"name":"endothelin signaling pathway","type":"related"}],"termid":"GO:0086100"}


id: MOD:00149
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts four L-cysteine residues and a four-iron four-sulfur cluster to tetrakis-L-cysteinyl tetrairon tetrasulfide.","definition_xrefs":["RESID:AA0140","PubMed:7803404","PubMed:3351918","PubMed:7819196","PubMed:932007"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster containing modification","termid":"MOD:00739"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"tetrakis-L-cysteinyl tetrairon tetrasulfide","synonyms":[{"name":"METAL Iron-sulfur (4Fe-4S)","type":"exact"},{"name":"METAL Iron-sulfur (4Fe-4S); shared with dimeric partner","type":"exact"},{"name":"tetra-mu3-sulfido-tetrakis(cysteinato)-1kappaS,2kappaS,3kappaS,4kappaS-tetrahedro-tetrairon","type":"exact"},{"name":"tetra-mu3-sulfidotetrakis(S-cysteinyliron)","type":"exact"},{"name":"tetrakis-L-cysteinyl tetrairon tetrasulfide","type":"exact"}],"termid":"MOD:00149"}


id: PBO:0029120
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mononucleate","termid":"PBO:0029120"}


id: PBO:0065849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB11 family interacting protein 1","termid":"PBO:0065849"}


id: FYPO:0003384
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to chromium ions. Cells stop growing (and may die) at a concentration of chromium ions that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to chromium","synonyms":[{"name":"hypersensitive to chromium","type":"exact"},{"name":"sensitive to chromium during mitotic cell cycle","type":"related"},{"name":"sensitive to chromium during vegetative growth","type":"exact"},{"name":"sensitive to chromium ions","type":"exact"}],"termid":"FYPO:0003384"}


id: MONDO:0033116
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"spinocerebellar ataxia, autosomal recessive 26","secondary_identifiers":["OMIM:617633","UMLS:C4539948","DOID:0080260","MEDGEN:1617917"],"synonyms":[{"name":"SCAR26","type":"related"},{"name":"autosomal recessive spinocerebellar ataxia 26","type":"related"},{"name":"spinocerebellar ataxia, autosomal recessive 26","type":"exact"}],"termid":"MONDO:0033116","xrefs":{"Monarch":{"xref_id":"0033116"}}}


id: PBO:0046297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EMSY divergent transcript","termid":"PBO:0046297"}


id: PBO:0085834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; protein abundance increases in response to DNA replication stress; has potential orthologs in Saccharomyces species and in Yarrowia lipolytica","termid":"PBO:0085834"}


id: PBO:0060091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 38","termid":"PBO:0060091"}


id: GO:0005791
data:
  {"annotated_genes":["SJAG_02330","SJAG_02208","SJAG_00064","SJAG_00175","SJAG_02354","SJAG_03955","SJAG_00959","SJAG_01558","SJAG_00360","SJAG_02588"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72911,63506,97825,73224],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005784"},{"annotations":[72868,69557,90336,95495],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031207"},{"annotations":[68559,94037],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005785"},{"annotations":[97826],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071261"}]},"cv_name":"cellular_component","definition":"The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum","termid":"GO:0005783"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00064":null,"SJAG_00175":null,"SJAG_00360":null,"SJAG_00959":null,"SJAG_01558":null,"SJAG_02208":null,"SJAG_02330":null,"SJAG_02354":null,"SJAG_02588":null,"SJAG_03955":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005783","GO:0005575"],"is_obsolete":false,"name":"rough endoplasmic reticulum","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["NIF_Subcellular:sao1881364067","Wikipedia:Endoplasmic_reticulum#Rough_endoplasmic_reticulum"],"synonyms":[{"name":"RER","type":"exact"},{"name":"rough ER","type":"exact"}],"termid":"GO:0005791","terms_by_termid":{"GO:0005784":null,"GO:0005785":null,"GO:0031207":null,"GO:0071261":null}}


id: GO:0030211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of heparin, any member of a group of glycosaminoglycans of average Mr (6000-20000), consisting predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosaminoglycan catabolic process","termid":"GO:0006027"},{"relation_name":"is_a","term_name":"heparin metabolic process","termid":"GO:0030202"},{"relation_name":"is_a","term_name":"sulfur compound catabolic process","termid":"GO:0044273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0006790"],"is_obsolete":false,"name":"heparin catabolic process","synonyms":[{"name":"heparan sulfate catabolic process","type":"related"},{"name":"heparin breakdown","type":"exact"},{"name":"heparin catabolism","type":"exact"},{"name":"heparin degradation","type":"exact"}],"termid":"GO:0030211"}


id: PR:Q10413
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1F3.08c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1F3.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F3.08c","synonyms":[{"name":"Spom972h-SPAC1F3.08c","type":"exact"}],"termid":"PR:Q10413"}


id: PBO:0091010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER to Golgi transport protein Yos1","termid":"PBO:0091010"}


id: GO:0030056
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell-substrate junction (attachment structure) found in epithelial cells that links intermediate filaments to extracellular matrices via transmembrane complexes. In vertebrates, hemidesmosomes mediate contact between the basal side of epithelial cells and the basal lamina. In C. elegans, hemidesmosomes connect epithelial cells to distinct extracellular matrices on both the apical and basal cell surfaces.","definition_xrefs":["GOC:kmv","ISBN:0815316208","PMID:20205195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-substrate junction","termid":"GO:0030055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"hemidesmosome","secondary_identifiers":["Wikipedia:Hemidesmosome"],"synonyms":[{"name":"epidermal attachment structure","type":"narrow"},{"name":"fibrous organelle","type":"narrow"},{"name":"hemi-adherens junction","type":"related"},{"name":"trans-epithelial attachment","type":"narrow"}],"termid":"GO:0030056"}


id: PBO:0062523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily S member 1","termid":"PBO:0062523"}


id: GO:0044838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A specialized resting state that cells enter in response to cues from the cell's environment. Quiescence is characterized by the absence of cell growth and division, by a reprogramming of global gene expression, and by changes characteristic of the organism and specific cell type. Depending on external conditions, quiescence may persist until cell death or cells may resume cell growth and division. In some cell types or under certain conditions, cellular metabolism may proceed.","definition_xrefs":["GOC:jb","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle phase","termid":"GO:0022403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell quiescence","synonyms":[{"name":"G0 phase","type":"related"},{"name":"cell cycle quiescence","type":"related"},{"name":"cellular quiescence","type":"exact"},{"name":"quiescence","type":"broad"}],"termid":"GO:0044838"}


id: FYPO:0006244
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic chromosome condensation does not occur over short (less than 90 kb) ranges within a chromosome arm.","definition_xrefs":["PomBase:mah","PMID:28825727"],"gene_count":0,"genotype_count":0,"name":"obsolete abolished short range intra-arm mitotic chromosome condensation during interphase (obsolete FYPO:0006244)","termid":"FYPO:0006244"}


id: MONDO:0009482
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hypogonadotropic hypogonadism in which the cause of the disease is a mutation in the PROKR2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Kallmann syndrome","termid":"MONDO:0018800"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypogonadotropic hypogonadism 3 with or without anosmia","secondary_identifiers":["OMIM:244200","GARD:3073","ICD10CM:E23.0","MEDGEN:763392","DOID:0090092","UMLS:C3550478"],"synonyms":[{"name":"HH3","type":"related"},{"name":"KAL3","type":"related"},{"name":"Kallmann syndrome 3","type":"related"},{"name":"PROKR2 hypogonadotropic hypogonadism","type":"exact"},{"name":"hypogonadotropic hypogonadism 3 with or without anosmia","type":"exact"},{"name":"hypogonadotropic hypogonadism caused by mutation in PROKR2","type":"exact"}],"termid":"MONDO:0009482","xrefs":{"Monarch":{"xref_id":"0009482"}}}


id: PBO:0083319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF IMA3/YIL172C","termid":"PBO:0083319"}


id: PBO:0085787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unconfirmed function; similar to cell surface flocculin Flo11p; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression; in W303 strain one continuous open reading frame comprising of YDL037C, the intergenic region and YDL039C encodes the gene IMI1","termid":"PBO:0085787"}


id: PR:O74973
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC4B4.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4B4.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4B4.12c","synonyms":[{"name":"Spom972h-SPBC4B4.12c","type":"exact"}],"termid":"PR:O74973"}


id: PBO:0039806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor 2, pseudogene","termid":"PBO:0039806"}


id: MONDO:0001986
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal pupillary function","termid":"MONDO:0001303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Argyll Robertson pupil","secondary_identifiers":["MEDGEN:536150","UMLS:C0234668","ICD10CM:H57.01","icd11.foundation:1086796982","SCTID:21011008","DOID:14523","ICD9:379.45"],"synonyms":[{"name":"Argyll Robertson phenomenon or pupil, nonsyphilitic","type":"exact"},{"name":"Argyll Robertson pupil, atypical","type":"exact"},{"name":"atypical Argyll-Robertson pupil","type":"exact"}],"termid":"MONDO:0001986","xrefs":{"Monarch":{"xref_id":"0001986"}}}


id: RO:0008502
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of epiphyte of","direct_ancestors":[{"relation_name":"is_a","term_name":"symbiotically_interacts_with","termid":"RO:0002440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_epiphyte","termid":"RO:0008502"}


id: PBO:0052535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 8","termid":"PBO:0052535"}


id: GO:0061146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a Peyer's patch is generated and organized. Peyer's patches are typically found as nodules associated with gut epithelium with distinct internal structures including B- and T-zones for the activation of lymphocytes.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue morphogenesis","termid":"GO:0048729"},{"relation_name":"part_of","term_name":"Peyer's patch development","termid":"GO:0048541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Peyer's patch morphogenesis","termid":"GO:0061146"}


id: PBO:0034212
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_model","termid":"PBO:0034212"}


id: MONDO:0013919
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"idiopathic generalized epilepsy","termid":"MONDO:0005579"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epilepsy, idiopathic generalized, susceptibility to, 12","secondary_identifiers":["DOID:0111313","UMLS:C3553859","MEDGEN:766773","OMIM:614847"],"synonyms":[{"name":"EIG12","type":"exact"},{"name":"epilepsy, idiopathic generalized, susceptibility to, 12","type":"exact"},{"name":"epilepsy, idiopathic generalized, susceptibility to, type 12","type":"exact"},{"name":"susceptibility to idiopathic generalised epilepsy 12","type":"related"},{"name":"susceptibility to idiopathic generalized epilepsy 12","type":"related"}],"termid":"MONDO:0013919","xrefs":{"Monarch":{"xref_id":"0013919"}}}


id: PBO:0090996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Atg8-interacting ER-phagy receptor Epr1","termid":"PBO:0090996"}


id: PBO:0042752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein V like 2","termid":"PBO:0042752"}


id: GO:0089718
data:
  {"annotated_genes":["SJAG_03970","SJAG_02605","SJAG_04718","SJAG_00991","SJAG_05346","SJAG_04637","SJAG_03591"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100146],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097638"},{"annotations":[100147],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097639"},{"annotations":[87836],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905533"},{"annotations":[93090,110336,98663,91499],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905589"},{"annotations":[91500,93091,98664],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905534"},{"annotations":[93092],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905626"},{"annotations":[101002,100140],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905647"}]},"cv_name":"biological_process","definition":"The directed movement of an amino acid from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["GOC:krc","PMID:8195186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"import across plasma membrane","termid":"GO:0098739"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_02605":null,"SJAG_03591":null,"SJAG_03970":null,"SJAG_04637":null,"SJAG_04718":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"amino acid import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0044745","GO:1902837","GO:0043092"],"synonyms":[{"name":"L-amino acid import","type":"broad"},{"name":"L-amino acid uptake","type":"narrow"},{"name":"amino acid import into cell","type":"exact"},{"name":"amino acid transmembrane import","type":"broad"}],"termid":"GO:0089718","terms_by_termid":{"GO:0097638":null,"GO:0097639":null,"GO:1905533":null,"GO:1905534":null,"GO:1905589":null,"GO:1905626":null,"GO:1905647":null}}


id: FYPO:0001906
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A stress response phenotype observed in the vegetative growth phase of the life cycle in which the response to thiamine starvation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular response to starvation during vegetative growth","termid":"FYPO:0001339"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000298","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal cellular response to thiamine starvation","synonyms":[{"name":"abnormal cellular response to thiamin starvation","type":"exact"},{"name":"abnormal cellular response to thiamine depletion","type":"exact"},{"name":"abnormal cellular response to thiamine deprivation","type":"exact"},{"name":"abnormal cellular response to thiamine starvation during mitotic cell cycle","type":"related"},{"name":"abnormal cellular response to thiamine starvation during vegetative growth","type":"exact"},{"name":"abnormal cellular response to vitamin B1 starvation","type":"exact"}],"termid":"FYPO:0001906"}


id: GO:0032246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of a pyrimidine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleoside transport","termid":"GO:0032242"},{"relation_name":"regulates","term_name":"pyrimidine nucleoside transport","termid":"GO:0015864"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of pyrimidine nucleoside transport","termid":"GO:0032246"}


id: GO:0075049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont cell wall strengthening during entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of symbiont cell wall strengthening involved in entry into host (obsolete GO:0075049)","synonyms":[{"name":"modulation of symbiont cell wall strengthening during entry into host","type":"related"}],"termid":"GO:0075049"}


id: PBO:0026896
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_phosphorylation_of_RNA_polymerase_II_C-terminal_domain_serine_5_residues_during_nitrogen_starvation","termid":"PBO:0026896"}


id: GO:0008429
data:
  {"annotated_genes":["SJAG_02414"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70085],"is_not":false,"summary":null,"term":"GO:0008429"}]},"cv_name":"molecular_function","definition":"Binding to a phosphatidylethanolamine, a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid binding","termid":"GO:0005543"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02414":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0008289","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"phosphatidylethanolamine binding","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0008429","terms_by_termid":{"GO:0008429":null}}


id: GO:0002436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of immune complex clearance by monocytes or macrophages.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune complex clearance","termid":"GO:0002434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"immune complex clearance by monocytes and macrophages","termid":"GO:0002436"}


id: PBO:0081610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 534","termid":"PBO:0081610"}


id: GO:0070906
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: aspartate(out) + alanine(in) = aspartate(in) + alanine(out).","definition_xrefs":["GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transmembrane transporter activity","termid":"GO:0005310"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"},{"relation_name":"is_a","term_name":"C4-dicarboxylate transmembrane transporter activity","termid":"GO:0015556"},{"relation_name":"is_a","term_name":"alanine transmembrane transporter activity","termid":"GO:0022858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"aspartate:alanine antiporter activity","secondary_identifiers":["RHEA:33139"],"synonyms":[{"name":"aspartate-alanine antiporter activity","type":"exact"},{"name":"aspartate/alanine antiporter activity","type":"exact"}],"termid":"GO:0070906"}


id: PBO:0001522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex subunit (predicted)","termid":"PBO:0001522"}


id: GO:0033743
data:
  {"annotated_genes":["SJAG_00365"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76641],"is_not":false,"summary":null,"term":"GO:0033743"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: peptide-L-methionine + H2O + thioredoxin disulfide = peptide-L-methionine (R)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the R enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin.","definition_xrefs":["GOC:mah","EC:1.8.4.12","GOC:vw","RHEA:24164"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00365":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"peptide-methionine (R)-S-oxide reductase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:1.8.4.12-RXN","GO:0000318","KEGG_REACTION:R07607","Reactome:R-HSA-5676917"],"synonyms":[{"name":"MsrB","type":"related"},{"name":"PilB","type":"related"},{"name":"SelR","type":"related"},{"name":"SelX","type":"related"},{"name":"methionine S-oxide reductase (R-form oxidizing) activity","type":"related"},{"name":"methionine S-oxide reductase activity","type":"broad"},{"name":"methionine sulfoxide reductase B activity","type":"narrow"},{"name":"methionine sulfoxide reductase activity","type":"broad"},{"name":"pMRsr","type":"related"},{"name":"pMSR","type":"related"},{"name":"peptide-methionine:thioredoxin-disulfide S-oxidoreductase [methionine (R)-S-oxide-forming] activity","type":"related"},{"name":"protein-methionine-R-oxide reductase activity","type":"exact"},{"name":"selenoprotein R","type":"related"}],"termid":"GO:0033743","terms_by_termid":{"GO:0033743":null}}


id: PBO:0052913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 13-5, pseudogene","termid":"PBO:0052913"}


id: PBO:0035805
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3_acetylation_during_vegetative_growth","termid":"PBO:0035805"}


id: PBO:0042948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 2","termid":"PBO:0042948"}


id: PBO:0042507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin related family member 1","termid":"PBO:0042507"}


id: PBO:0044821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 109D (pseudogene)","termid":"PBO:0044821"}


id: MONDO:0007708
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Kasabach-Merritt syndrome (KMS), also known as hemangioma-thrombocytopenia syndrome, is a rare disorder characterized by profound thrombocytopenia, microangiopathic hemolytic anemia, and subsequent consumptive coagulopathy in association with vascular tumors, particularly kaposiform hemangioendothelioma or tufted angioma.","definition_xrefs":["Orphanet:2330"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kasabach-Merritt syndrome","secondary_identifiers":["MESH:D059885","GARD:70","NANDO:2201035","OMIM:141000","SCTID:86635005","UMLS:C0221025","MEDGEN:65122","MedDRA:10058423","icd11.foundation:2059601885","NCIT:C3821","ICD9:287.39","NORD:1320","NANDO:2100297"],"synonyms":[{"name":"KMP","type":"related"},{"name":"Kasabach Merritt phenomenon","type":"exact"},{"name":"Kasabach Merritt syndrome","type":"exact"},{"name":"Kasabach-Merritt Phenomenon","type":"exact"},{"name":"Kasabach-Merritt syndrome","type":"exact"},{"name":"hemangioma thrombocytopenia syndrome","type":"related"},{"name":"hemangioma-hemorrhage syndrome","type":"exact"},{"name":"hemangioma-thrombocytopenia syndrome","type":"exact"},{"name":"hemangiomatosis with thrombocytopenia","type":"exact"},{"name":"thrombocytopenia-hemangioma syndrome","type":"exact"},{"name":"thrombopenia-hemangioma syndrome","type":"exact"}],"termid":"MONDO:0007708","xrefs":{"Monarch":{"xref_id":"0007708"}}}


id: PR:O43013
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- csi1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O43013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C2G2.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G2.14","synonyms":[{"name":"Spom972h-csi1","type":"exact"}],"termid":"PR:O43013"}


id: PBO:0060893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuraminidase 2","termid":"PBO:0060893"}


id: GO:0039507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the functional activity of a host protein.","definition_xrefs":["GOC:sp","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host molecular function (obsolete GO:0039507)","synonyms":[{"name":"down regulation by virus of host protein function","type":"exact"},{"name":"down-regulation by virus of host protein function","type":"exact"},{"name":"inhibition by virus of host protein function","type":"narrow"},{"name":"inhibition of host protein function","type":"narrow"},{"name":"negative regulation by virus of host molecular function","type":"exact"},{"name":"negative regulation by virus of host protein function","type":"exact"}],"termid":"GO:0039507"}


id: FYPO:0001306
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which long-chain fatty acid-CoA ligase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal long-chain fatty acid-CoA ligase activity","termid":"FYPO:0001305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000707","FYPO:0001985","FYPO:0000002","FYPO:0000661","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"abolished long-chain fatty acid-CoA ligase activity","synonyms":[{"name":"abolished lcfa-ligase activity","type":"exact"},{"name":"long-chain fatty acid-CoA ligase activity abolished","type":"exact"}],"termid":"FYPO:0001306"}


id: PBO:0071306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 29","termid":"PBO:0071306"}


id: GO:0045944
data:
  {"annotated_genes":["SJAG_00987","SJAG_04755","SJAG_04206","SJAG_00266","SJAG_03484","SJAG_02592","SJAG_00904","SJAG_02406","SJAG_03118","SJAG_02723","SJAG_04388","SJAG_04813","SJAG_02415","SJAG_05247","SJAG_05203","SJAG_05153","SJAG_00909","SJAG_01805","SJAG_01307","SJAG_02730","SJAG_02810","SJAG_04009","SJAG_01062","SJAG_01213","SJAG_04705","SJAG_04855","SJAG_04092","SJAG_03590","SJAG_02494","SJAG_03573","SJAG_02773","SJAG_04647","SJAG_03879","SJAG_03289","SJAG_01403","SJAG_00297","SJAG_00766","SJAG_00792","SJAG_02671","SJAG_01193","SJAG_02255","SJAG_01150","SJAG_02698","SJAG_00693","SJAG_02551","SJAG_06576","SJAG_01952","SJAG_02252","SJAG_01778","SJAG_02048","SJAG_05341","SJAG_01771","SJAG_06638","SJAG_05288","SJAG_04249","SJAG_03183","SJAG_01916","SJAG_00150","SJAG_01878","SJAG_00163","SJAG_03501","SJAG_02326","SJAG_04712","SJAG_02709","SJAG_02956","SJAG_03421","SJAG_03967","SJAG_03538","SJAG_02849","SJAG_05343","SJAG_00210","SJAG_03061","SJAG_01243","SJAG_00164","SJAG_04421","SJAG_00802","SJAG_00613","SJAG_02472","SJAG_00822","SJAG_02057","SJAG_02218","SJAG_02138","SJAG_04611","SJAG_01938","SJAG_04099","SJAG_00269","SJAG_03519","SJAG_06599","SJAG_04749","SJAG_02311","SJAG_01583","SJAG_03735","SJAG_01441","SJAG_02938","SJAG_01149","SJAG_03067","SJAG_03981","SJAG_01740","SJAG_01694","SJAG_01199","SJAG_04820","SJAG_03622","SJAG_04036","SJAG_01151","SJAG_02254","SJAG_02196","SJAG_04191","SJAG_02391","SJAG_03241","SJAG_03143","SJAG_00156","SJAG_05313","SJAG_01113","SJAG_03346","SJAG_02474","SJAG_00342","SJAG_00973","SJAG_00641","SJAG_04839","SJAG_04551","SJAG_00698"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[60921,61833,62724,62752,64862,65950,67165,68230,68373,68885,69013,69955,69961,70543,70612,71247,71287,71472,71836,72134,72517,73115,73132,73451,73471,74410,74685,75189,75474,75605,75953,76506,77146,77212,77796,78345,78848,79260,79356,79519,79882,87161,92508,93473,93567,94133,94841,95289,95452,96698,97069,97298,97299,97300,97301,97302,98204,98362,99082,99290,100273,100284,101937,102018,102065,102487,102956,104233,107214,107378,107773,108266,108379,108438,108610,108846,109491,110520,111548,111677,112091,114639,116086,116278,116795,117182,118043,118900,118901],"is_not":false,"summary":null,"term":"GO:0045944"},{"annotations":[87706,89210,93253,106457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060963"},{"annotations":[79209,89456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045899"},{"annotations":[79288,70634,71257,77820,105843,116804],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032968"},{"annotations":[108525,105495,98461,105844,106036,118742,106169,103204,108552,90118,95141,98812,95624,103463,114538,115105,90434,87199,101745,94098,94208],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060261"}]},"cv_name":"biological_process","definition":"Any 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regulation of transcription by RNA polymerase II","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0010552","GO:0045817","Reactome:R-HSA-8866906","Reactome:R-HSA-2173796","Reactome:R-HSA-8866907"],"synonyms":[{"name":"activation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"activation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter","type":"related"},{"name":"positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter, global","type":"related"},{"name":"stimulation of global transcription from RNA polymerase II promoter","type":"narrow"},{"name":"stimulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"upregulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0045944","terms_by_termid":{"GO:0032968":null,"GO:0045899":null,"GO:0045944":null,"GO:0060261":null,"GO:0060963":null}}


id: PBO:0082702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the meiotic outer plaque of the spindle pole body; involved in modifying the meiotic outer plaque that is required prior to prospore membrane formation","termid":"PBO:0082702"}


id: MONDO:0021078
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"papilloma","termid":"MONDO:0002363"},{"relation_name":"is_a","term_name":"glandular cell neoplasm","termid":"MONDO:0024276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glandular papilloma","secondary_identifiers":["UMLS:C3282896","NCIT:C6880","MEDGEN:482986"],"synonyms":[{"name":"glandular papilloma","type":"exact"}],"termid":"MONDO:0021078","xrefs":{"Monarch":{"xref_id":"0021078"}}}


id: MONDO:0014627
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any dystonic disorder in which the cause of the disease is a mutation in the COL6A3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"segmental dystonia","termid":"MONDO:0000479"},{"relation_name":"is_a","term_name":"focal, segmental or multifocal dystonia","termid":"MONDO:0015990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"}],"interesting_parent_ids":["MONDO:0003441"],"is_obsolete":false,"name":"dystonia 27","secondary_identifiers":["DOID:0090050","GARD:17819","MEDGEN:907580","Orphanet:464440","OMIM:616411","UMLS:C4225336"],"synonyms":[{"name":"COL6A3 dystonic disorder","type":"exact"},{"name":"DYT27","type":"related"},{"name":"dystonia 27","type":"exact"},{"name":"dystonia type 27","type":"exact"},{"name":"dystonic disorder caused by mutation in COL6A3","type":"exact"},{"name":"primary dystonia, DYT27 type","type":"related"}],"termid":"MONDO:0014627","xrefs":{"Monarch":{"xref_id":"0014627"}}}


id: PBO:0081716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 644","termid":"PBO:0081716"}


id: PBO:0047392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 32","termid":"PBO:0047392"}


id: GO:0008029
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a pentraxin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:add","ISBN:0781735149","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"opsonin receptor activity","termid":"GO:0001847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"pentraxin receptor activity","synonyms":[{"name":"pentaxin receptor","type":"exact"}],"termid":"GO:0008029"}


id: PBO:0053997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1320","termid":"PBO:0053997"}


id: PBO:0063369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proprotein convertase subtilisin/kexin type 9","termid":"PBO:0063369"}


id: MONDO:0044879
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-invasive or invasive cystic epithelial neoplasm that affects almost exclusively females. It is characterized by the presence of columnar mucin-producing epithelial cells and ovarian-type stroma formation.","definition_xrefs":["NCIT:C41247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucinous neoplasm","termid":"MONDO:0024338"},{"relation_name":"is_a","term_name":"cystic tumor of the pancreas","termid":"MONDO:0044880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"pancreatic mucinous-cystic neoplasm","secondary_identifiers":["UMLS:C1518872","ONCOTREE:MCN","MEDGEN:274120"],"synonyms":[{"name":"Pancreatic mucinous cystic neoplasm","type":"exact"},{"name":"Pancreatic mucinous-cystic neoplasm","type":"exact"},{"name":"mucinous cystic neoplasm","type":"related"}],"termid":"MONDO:0044879","xrefs":{"Monarch":{"xref_id":"0044879"}}}


id: MOD:01772
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The palmityl cation protein modification reporter fragment produced by fragmentation of some palmitoyl modified residues.","definition_xrefs":["PubMed:8413602","PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"palmitoylated residue","termid":"MOD:00440"},{"relation_name":"is_a","term_name":"modification reporter fragment","termid":"MOD:01520"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmityl reporter fragment","synonyms":[{"name":"Pam+","type":"exact"},{"name":"palmityl cation","type":"related"}],"termid":"MOD:01772"}


id: GO:0015032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The incorporation of hemolymph proteins by cells of the fat body of holometabolous insects, during the final larval stage. Uptake of these proteins prepares the insect for pupation and metamorphosis, since insect pupae do not feed and therefore depend on material that has been accumulated during larval life.","definition_xrefs":["GOC:bf","PMID:10231363"],"gene_count":0,"genotype_count":0,"name":"obsolete storage protein import into fat body (obsolete GO:0015032)","synonyms":[{"name":"fat body metabolic process","type":"broad"},{"name":"fat body metabolism","type":"broad"},{"name":"fat body storage protein uptake","type":"exact"},{"name":"import of storage protein into fat body","type":"exact"},{"name":"storage protein import by fat body cells","type":"exact"},{"name":"storage protein import into fat body cells","type":"exact"},{"name":"storage protein transport into fat body cells","type":"exact"},{"name":"storage protein uptake into fat body cells","type":"exact"}],"termid":"GO:0015032"}


id: GO:0061719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glucose into pyruvate, with the concomitant production of a small amount of ATP and the utilization of ADP in the initial kinase reactions.","definition_xrefs":["GOC:dph","MetaCyc:P341-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"generation of precursor metabolites and energy","termid":"GO:0006091"},{"relation_name":"is_a","term_name":"glucose catabolic process to pyruvate","termid":"GO:0061718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006091","GO:0005975"],"is_obsolete":false,"name":"glucose catabolic process to pyruvate utilizing ADP","termid":"GO:0061719"}


id: MONDO:0009404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypertelorism-microtia-facial clefting syndrome, or HMC syndrome, is a very rare syndrome characterized by the combination of hypertelorism, cleft lip and palate and microtia.","definition_xrefs":["Orphanet:2213"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"hypertelorism, microtia, facial clefting syndrome","secondary_identifiers":["GARD:897","DOID:14670","SCTID:721836009","UMLS:C0220742","MEDGEN:113104","MESH:C537632","OMIM:239800"],"synonyms":[{"name":"Bixler Christian Gorlin syndrome","type":"exact"},{"name":"Bixler syndrome","type":"exact"},{"name":"Bixler-Christian-Gorlin syndrome","type":"exact"},{"name":"HMC syndrome","type":"exact"},{"name":"hypertelorism microtia facial clefting syndrome","type":"related"},{"name":"hypertelorism, microtia, facial clefting syndrome","type":"exact"},{"name":"hypertelorism-microtia-clefting syndrome","type":"exact"},{"name":"hypertelorism-microtia-facial clefting syndrome","type":"exact"}],"termid":"MONDO:0009404","xrefs":{"Monarch":{"xref_id":"0009404"}}}


id: GO:0085021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type I secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modification by symbiont of host morphology or physiology via protein secreted by type I secretion system (obsolete GO:0085021)","termid":"GO:0085021"}


id: GO:0018590
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: methylsilanetriol + O2 + 2 H+ + 2 e- = H2O + hydroxymethylsilanetriol.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete methylsilanetriol hydroxylase activity (obsolete GO:0018590)","termid":"GO:0018590"}


id: PBO:0074104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 28 member 1","termid":"PBO:0074104"}


id: MONDO:0012540
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any age-related macular degeneration in which the cause of the disease is a mutation in the CFH gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"age-related macular degeneration","termid":"MONDO:0005150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"age related macular degeneration 4","secondary_identifiers":["MEDGEN:339914","MESH:C565196","UMLS:C1853147","OMIM:610698","DOID:0110017"],"synonyms":[{"name":"ARMD4","type":"exact"},{"name":"CFH age-related macular degeneration","type":"exact"},{"name":"age related macular degeneration type 4","type":"exact"},{"name":"age-related macular degeneration caused by mutation in CFH","type":"exact"},{"name":"macular Degeneration, age-related, type 4","type":"exact"},{"name":"macular degeneration, age-related, 4","type":"related"}],"termid":"MONDO:0012540","xrefs":{"Monarch":{"xref_id":"0012540"}}}


id: GO:0052697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of a xenobiotic substance by the conjugation of glucuronic acid. The resultant glucuronosides are often much more water-soluble than the xenobiotic precursor, enabling efficient excretion.","definition_xrefs":["PMID:20056724","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete xenobiotic glucuronidation (obsolete GO:0052697)","synonyms":[{"name":"phase II metabolism","type":"narrow"}],"termid":"GO:0052697"}


id: MONDO:0049221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myopia","termid":"MONDO:0001384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"myopia 26, X-linked, female-limited","secondary_identifiers":["MEDGEN:1618364","OMIM:301010","UMLS:C4538795"],"synonyms":[{"name":"MYP26","type":"related"},{"name":"myopia 26, X-linked, female-limited","type":"exact"}],"termid":"MONDO:0049221","xrefs":{"Monarch":{"xref_id":"0049221"}}}


id: MONDO:0018389
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete male infertility due to gonadal dysgenesis or sperm disorder (obsolete MONDO:0018389)","secondary_identifiers":["Orphanet:399764"],"synonyms":[{"name":"Male infertility due to testicular dysgenesis or sperm disorder","type":"exact"}],"termid":"MONDO:0018389","xrefs":{"Monarch":{"xref_id":"0018389"}}}


id: GO:0090118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A receptor-mediated endocytosis process involved in intracellular cholesterol transport.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor-mediated endocytosis","termid":"GO:0006898"},{"relation_name":"is_a","term_name":"intracellular transport","termid":"GO:0046907"},{"relation_name":"part_of","term_name":"intracellular cholesterol transport","termid":"GO:0032367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192","GO:0051179"],"is_obsolete":false,"name":"receptor-mediated endocytosis involved in cholesterol transport","synonyms":[{"name":"receptor-mediated endocytosis involved in intracellular cholesterol transport","type":"related"},{"name":"receptor-mediated endocytosis of LDL","type":"related"},{"name":"receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"related"}],"termid":"GO:0090118"}


id: GO:0048279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the endoplasmic reticulum.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion","termid":"GO:0006906"},{"relation_name":"is_a","term_name":"endoplasmic reticulum organization","termid":"GO:0007029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192","GO:0061024"],"is_obsolete":false,"name":"vesicle fusion with endoplasmic reticulum","synonyms":[{"name":"vesicle fusion with ER","type":"exact"}],"termid":"GO:0048279"}


id: PBO:0079852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-93 homolog B1, TLR signaling regulator","termid":"PBO:0079852"}


id: PBO:0047809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box L3","termid":"PBO:0047809"}


id: PBO:0041511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 14 open reading frame 178","termid":"PBO:0041511"}


id: PBO:0089033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial Rieske ISP assembly ATPase Bcs1","termid":"PBO:0089033"}


id: SO:0005853
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that can be substituted for a related gene at a different site in the genome.","definition_xrefs":["SGD:se"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_cassette","secondary_identifiers":["http://en.wikipedia.org/wiki/Gene_cassette"],"synonyms":[{"name":"gene cassette","type":"exact"}],"termid":"SO:0005853"}


id: FYPO:0000477
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which one or both meiotic nuclear division(s) begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiosis","termid":"FYPO:0000051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of meiosis","synonyms":[{"name":"delayed meiosis","type":"exact"},{"name":"delayed onset of meiotic nuclear division","type":"exact"},{"name":"meiosis: delayed","type":"related"}],"termid":"FYPO:0000477"}


id: MONDO:0006965
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Symmetrical osteitis of the four limbs, chiefly localized to the phalanges and the terminal epiphyses of the long bones of the forearm and leg, sometimes extending to the proximal ends of the limbs and the flat bones, and accompanied by dorsal kyphosis and joint involvement. It is often secondary to chronic conditions of the lungs and heart. (Dorland, 27th ed)","definition_xrefs":["MESH:D010005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arthropathy","termid":"MONDO:0006816"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secondary hypertrophic osteoarthropathy","secondary_identifiers":["EFO:1001174","SCTID:203357004","icd11.foundation:1325516156","DOID:10393","ICD9:731.2","MEDGEN:18211","UMLS:C0029412"],"synonyms":[{"name":"Bamberger-Marie disease","type":"exact"},{"name":"HPOA - hypertrophic pulmonary osteoarthropathy","type":"exact"},{"name":"Marie Bamberger disease","type":"exact"},{"name":"hypertrophic pulmonary osteoarthropathy","type":"exact"},{"name":"hypertrophic pulmonary osteoarthropathy (disorder) [ambiguous]","type":"exact"}],"termid":"MONDO:0006965","xrefs":{"Monarch":{"xref_id":"0006965"}}}


id: FYPO:0002927
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which an interaction between a protein and a polyadenylated RNA (poly(A)RNA) is decreased. One of the relevant gene products may be encoded by the mutated gene, or both the RNA and protein may be encoded by genes other than the mutated one.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein-RNA interaction","termid":"FYPO:0002134"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002131"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0002131","FYPO:0001985"],"is_obsolete":false,"name":"decreased poly(A) RNA binding","synonyms":[{"name":"decreased polyA RNA binding","type":"exact"},{"name":"decreased polyadenylated RNA binding","type":"exact"},{"name":"decreased protein-poly(A) RNA interaction","type":"exact"},{"name":"reduced poly(A) RNA binding","type":"exact"}],"termid":"FYPO:0002927"}


id: GO:0035472
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the choriogonadotropin hormone to initiate a change in cell activity.","definition_xrefs":["ISBN:0198506732","GOC:bf","PMID:1922095"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"},{"relation_name":"is_a","term_name":"protein-hormone receptor activity","termid":"GO:0016500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"choriogonadotropin hormone receptor activity","synonyms":[{"name":"CG receptor activity","type":"exact"},{"name":"chorio-gonadotrophin receptor activity","type":"exact"},{"name":"chorionic gonadotropin hormone receptor","type":"exact"}],"termid":"GO:0035472"}


id: PBO:0003474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-keto sterol reductase (predicted)","termid":"PBO:0003474"}


id: PBO:0074301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLX1A-SULT1A3 readthrough (NMD candidate)","termid":"PBO:0074301"}


id: MONDO:0007713
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"facial nerve disorder","termid":"MONDO:0002098"},{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clonic hemifacial spasm","secondary_identifiers":["GARD:17137","ICD10CM:G51.3","MESH:C564198","OMIM:141405","UMLS:C1841639","icd11.foundation:64352031","MEDGEN:374760","Orphanet:221083","icd11.foundation:353312397"],"synonyms":[{"name":"facial hemispasm","type":"exact"},{"name":"focal myoclonus of face","type":"exact"},{"name":"hemifacial spasm","type":"related"},{"name":"hemifacial spasm, familial","type":"related"}],"termid":"MONDO:0007713","xrefs":{"Monarch":{"xref_id":"0007713"}}}


id: MONDO:0009306
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"},{"relation_name":"is_a","term_name":"T-B- severe combined immunodeficiency","termid":"MONDO:0017855"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005093"],"is_obsolete":false,"name":"combined immunodeficiency with skin granulomas","secondary_identifiers":["MESH:C567115","DOID:0112253","UMLS:C2673536","GARD:13587","MEDGEN:435945","OMIM:233650","Orphanet:157949"],"synonyms":[{"name":"CCHIDG","type":"related"},{"name":"CID due to RAG 1/2 deficiency","type":"exact"},{"name":"combined cellular and humoral immune defects with granulomas","type":"related"},{"name":"combined immunodeficiency due to RAG 1/2 deficiency","type":"exact"}],"termid":"MONDO:0009306","xrefs":{"Monarch":{"xref_id":"0009306"}}}


id: PBO:0084428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Major stress-induced structural GPI-cell wall glycoprotein; associates with translating ribosomes, possible role in mitochondrial genome maintenance; ORF contains two distinct variable minisatellites; SED1 has a paralog, SPI1, that arose from the whole genome duplication","termid":"PBO:0084428"}


id: PBO:0003901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial processing peptidase(MPP) complex alpha subunit Mas2 (predicted)","termid":"PBO:0003901"}


id: RO:0002623
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"visited_by","termid":"RO:0002619"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_flowers_visited_by","termid":"RO:0002623"}


id: PBO:0000011
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-localization_dependent_on","termid":"PBO:0000011"}


id: GO:0047201
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 1-O-galloyl-beta-D-glucose = 1,6-bis-O-galloyl-beta-D-glucose + D-glucose.","definition_xrefs":["EC:2.3.1.90","RHEA:11416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"beta-glucogallin O-galloyltransferase activity","secondary_identifiers":["KEGG_REACTION:R00049","MetaCyc:2.3.1.90-RXN"],"synonyms":[{"name":"1-O-galloyl-beta-D-glucose:1-O-galloyl-beta-D-glucose O-galloyltransferase activity","type":"related"}],"termid":"GO:0047201"}


id: GO:0032601
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of connective tissue growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"connective tissue growth factor production","synonyms":[{"name":"CCN2 production","type":"exact"},{"name":"CTGF production","type":"exact"},{"name":"Fisp12 production","type":"exact"},{"name":"Hcs24 production","type":"exact"},{"name":"IGFBP8 production","type":"exact"},{"name":"hypertrophic chondrocyte-specific gene product 24 production","type":"exact"}],"termid":"GO:0032601"}


id: PBO:0032736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post-Golgi vesicle-mediated transport protein Avl9 (predicted)","termid":"PBO:0032736"}


id: PBO:0068327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 32","termid":"PBO:0068327"}


id: PBO:0052097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel modulatory factor 1","termid":"PBO:0052097"}


id: PR:G2TRK9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- new13 gene.","definition_xrefs":["UniProtKB:G2TRK9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein new13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4D7.14","synonyms":[{"name":"Spom972h-new13","type":"exact"}],"termid":"PR:G2TRK9"}


id: FYPO:0006541
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell during mating is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level","termid":"FYPO:0000835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein level during mating","synonyms":[{"name":"decreased protein accumulation during mating","type":"related"},{"name":"decreased protein level during conjugation with cellular fusion","type":"exact"},{"name":"reduced protein level during mating","type":"exact"}],"termid":"FYPO:0006541"}


id: PATO:0001305
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A temperature which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"temperature","termid":"PATO:0000146"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased temperature","secondary_identifiers":["PATO:0000678"],"synonyms":[{"name":"high temperature","type":"exact"},{"name":"hot","type":"exact"}],"termid":"PATO:0001305"}


id: _global:hyperparasite_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"x is a hyperparasite of y iff x is a parasite of a parasite of the target organism y","direct_ancestors":[{"relation_name":"is_a","term_name":"has_host","termid":"_global:has_host"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperparasite_of","secondary_identifiers":["RO:0002553"],"synonyms":[{"name":"epiparasite of","type":"related"},{"name":"hyperparasitoid of","type":"narrow"}],"termid":"_global:hyperparasite_of"}


id: PBO:0072631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine and serine rich coiled-coil 1","termid":"PBO:0072631"}


id: PBO:0043798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliogenesis and planar polarity effector complex subunit 1","termid":"PBO:0043798"}


id: MONDO:0017929
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital achiasma is a rare, genetic, non-syndromic cranial nerve and nuclear aplasia malformation characterized by the congenital absence of the optic chiasm, resulting from the failure of the optic nerve fibers to cross over and decussate to the contralateral hemisphere, leading to decreased vision, strabismus and congenital nystagmus in infancy.","definition_xrefs":["Orphanet:324353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"congenital achiasma","secondary_identifiers":["MEDGEN:1392790","SCTID:734031008","ICD10CM:H47.4","GARD:21438","UMLS:C4518345"],"termid":"MONDO:0017929","xrefs":{"Monarch":{"xref_id":"0017929"}}}


id: GO:0030781
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + 6-O-methylnorlaudanosoline = S-adenosyl-L-homocysteine + nororientaline.","definition_xrefs":["EC:2.1.1.121"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"6-O-methylnorlaudanosoline 5'-O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.121-RXN","RHEA:11892"],"synonyms":[{"name":"S-adenosyl-L-methionine:6-O-methylnorlaudanosoline 5'-O-methyltransferase activity","type":"related"}],"termid":"GO:0030781"}


id: MONDO:0017011
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete uniparental disomy of chromosome X (obsolete MONDO:0017011)","secondary_identifiers":["Orphanet:263793"],"synonyms":[{"name":"UPD(X)","type":"exact"},{"name":"uniparental disomy of chromosome type X","type":"exact"}],"termid":"MONDO:0017011","xrefs":{"Monarch":{"xref_id":"0017011"}}}


id: FYPO:0007665
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell is viable, and contains one nucleus and one septum. The septum divides the cell into two compartments, one of which contains the nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viable vegetative cell","termid":"FYPO:0001491"},{"relation_name":"is_a","term_name":"mononucleate monoseptate vegetative cell with anucleate compartment","termid":"FYPO:0007664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable mononucleate monoseptate vegetative cell with anucleate compartment","synonyms":[{"name":"displaced nucleus with septum","type":"related"},{"name":"viable mononucleate monoseptate cell during vegetative growth","type":"exact"},{"name":"viable mononucleate monoseptate vegetative cell","type":"exact"},{"name":"viable mononucleate monoseptate vegetative cell during mitotic cell cycle","type":"related"},{"name":"viable with septation in the absence of nuclear division","type":"related"},{"name":"viable with septation independent of mitosis","type":"related"},{"name":"viable with septation without nuclear division","type":"related"}],"termid":"FYPO:0007665"}


id: GO:0031097
data:
  {"annotated_genes":["SJAG_03088","SJAG_00663","SJAG_03564","SJAG_04050","SJAG_02169","SJAG_01889","SJAG_03374","SJAG_00700","SJAG_04776","SJAG_04498","SJAG_04781","SJAG_02700","SJAG_04280","SJAG_04703","SJAG_01143","SJAG_01658","SJAG_00773","SJAG_01448","SJAG_03936","SJAG_01665","SJAG_03596","SJAG_00279","SJAG_00118","SJAG_03602","SJAG_04001","SJAG_03025","SJAG_03581","SJAG_04982","SJAG_00228","SJAG_00807","SJAG_00185","SJAG_03704","SJAG_05290","SJAG_02368","SJAG_04522","SJAG_01456","SJAG_01277","SJAG_00938","SJAG_01964","SJAG_02831","SJAG_04486","SJAG_00152","SJAG_04566","SJAG_02645","SJAG_01732","SJAG_03011","SJAG_02241","SJAG_04462","SJAG_03637","SJAG_03703","SJAG_04375","SJAG_04666","SJAG_03748","SJAG_03119","SJAG_02838","SJAG_02431"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[57007,62024,64849,68386,71732,73638,87279,87894,88211,92172,92292,94335,95126,97495,97692,98679,99106,99686,102449,102849,104939,105141,107408,110314,110551,110591,112850,117701,118682],"is_not":false,"summary":null,"term":"GO:0031097"},{"annotations":[103272,98207,115809,98780],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110115"},{"annotations":[97669,117682,101554,100743,97592,103704,118444,112572,99896,107753],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036391"},{"annotations":[100482,104973,92340,101048,105999,88699,90471,96080,88015,116837,97802,117683,93617,92078],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071341"}]},"cv_name":"cellular_component","definition":"A medial cortical band overlaying the nucleus which acts as a landmark for contractile ring positioning and plays a role in cell cycle regulation.","definition_xrefs":["PMID:19474789","GOC:vw","PMID:15572668"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cortex region","termid":"GO:0099738"},{"relation_name":"part_of","term_name":"cell division site","termid":"GO:0032153"}],"gene_count":56,"genes_by_uniquename":{"SJAG_00118":null,"SJAG_00152":null,"SJAG_00185":null,"SJAG_00228":null,"SJAG_00279":null,"SJAG_00663":null,"SJAG_00700":null,"SJAG_00773":null,"SJAG_00807":null,"SJAG_00938":null,"SJAG_01143":null,"SJAG_01277":null,"SJAG_01448":null,"SJAG_01456":null,"SJAG_01658":null,"SJAG_01665":null,"SJAG_01732":null,"SJAG_01889":null,"SJAG_01964":null,"SJAG_02169":null,"SJAG_02241":null,"SJAG_02368":null,"SJAG_02431":null,"SJAG_02645":null,"SJAG_02700":null,"SJAG_02831":null,"SJAG_02838":null,"SJAG_03011":null,"SJAG_03025":null,"SJAG_03088":null,"SJAG_03119":null,"SJAG_03374":null,"SJAG_03564":null,"SJAG_03581":null,"SJAG_03596":null,"SJAG_03602":null,"SJAG_03637":null,"SJAG_03703":null,"SJAG_03704":null,"SJAG_03748":null,"SJAG_03936":null,"SJAG_04001":null,"SJAG_04050":null,"SJAG_04280":null,"SJAG_04375":null,"SJAG_04462":null,"SJAG_04486":null,"SJAG_04498":null,"SJAG_04522":null,"SJAG_04566":null,"SJAG_04666":null,"SJAG_04703":null,"SJAG_04776":null,"SJAG_04781":null,"SJAG_04982":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005938"},{"rel_name":"is_a","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005938","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"medial cortex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"medial ring","type":"exact"}],"termid":"GO:0031097","terms_by_termid":{"GO:0031097":null,"GO:0036391":null,"GO:0071341":null,"GO:0110115":null}}


id: GO:0019277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-sugar biosynthetic process","termid":"GO:0009226"},{"relation_name":"is_a","term_name":"UDP-N-acetylgalactosamine metabolic process","termid":"GO:0019276"},{"relation_name":"is_a","term_name":"amino sugar biosynthetic process","termid":"GO:0046349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"UDP-N-acetylgalactosamine biosynthetic process","synonyms":[{"name":"UDP-N-acetylgalactosamine anabolism","type":"exact"},{"name":"UDP-N-acetylgalactosamine biosynthesis","type":"exact"},{"name":"UDP-N-acetylgalactosamine formation","type":"exact"},{"name":"UDP-N-acetylgalactosamine synthesis","type":"exact"}],"termid":"GO:0019277"}


id: MONDO:0006452
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, usually aggressive, primary thymic carcinoma, characterized by the presence of tumor cells morphologically resembling soft tissue sarcoma.","definition_xrefs":["NCIT:C6463"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"thymus squamous cell carcinoma","termid":"MONDO:0003493"},{"relation_name":"is_a","term_name":"sarcomatoid carcinoma","termid":"MONDO:0006406"},{"relation_name":"is_a","term_name":"thymic carcinoma","termid":"MONDO:0006451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"thymic sarcomatoid carcinoma","secondary_identifiers":["EFO:1000577","MEDGEN:234772","UMLS:C1335924","DOID:8138"],"synonyms":[{"name":"Thymus sarcomatoid carcinoma","type":"exact"},{"name":"sarcomatoid carcinoma of Thymus","type":"exact"},{"name":"sarcomatoid carcinoma of the Thymus","type":"exact"},{"name":"thymic carcinosarcoma","type":"exact"},{"name":"thymic sarcomatoid carcinoma","type":"exact"},{"name":"thymic spindle cell carcinoma","type":"exact"},{"name":"thymus sarcomatoid carcinoma","type":"exact"}],"termid":"MONDO:0006452","xrefs":{"Monarch":{"xref_id":"0006452"}}}


id: SO:0000057
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptional_cis_regulatory_region","termid":"SO:0001055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"operator","secondary_identifiers":["http://en.wikipedia.org/wiki/Operator_(biology)#Operator"],"synonyms":[{"name":"operator segment","type":"exact"}],"termid":"SO:0000057"}


id: PBO:0064269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology and RhoGEF domain containing G3","termid":"PBO:0064269"}


id: PBO:0034590
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_meiosis_II","termid":"PBO:0034590"}


id: GO:0042436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of compounds that contain an indole (2,3-benzopyrrole) skeleton.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"indole-containing compound metabolic process","termid":"GO:0042430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"indole-containing compound catabolic process","synonyms":[{"name":"indole derivative catabolic process","type":"exact"},{"name":"indole derivative catabolism","type":"exact"},{"name":"indole-containing compound breakdown","type":"exact"},{"name":"indole-containing compound catabolism","type":"exact"},{"name":"indole-containing compound degradation","type":"exact"}],"termid":"GO:0042436"}


id: PBO:0078627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 77","termid":"PBO:0078627"}


id: GO:0015741
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of fumarate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C4-dicarboxylate transport","termid":"GO:0015740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"fumarate transport","termid":"GO:0015741"}


id: PR:Q9P6M7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug99 gene.","definition_xrefs":["UniProtKB:Q9P6M7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 99 protein, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1610.04","synonyms":[{"name":"Spom972h-mug99","type":"exact"}],"termid":"PR:Q9P6M7"}


id: PBO:0029961
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cytochrome-c_oxidase_activity","termid":"PBO:0029961"}


id: PBO:0050211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 28","termid":"PBO:0050211"}


id: MONDO:0000698
data:
  {"annotated_genes":["SJAG_00674","SJAG_03293","SJAG_03434"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86429],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013166"},{"annotations":[84948,84947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010083"}]},"cv_name":"mondo","definition":"An amino acid metabolic disorder characterized by impairment of the GABA catabolic pathway.","definition_xrefs":["DOID:0060176","PMID:12891648"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of amino acid metabolism","termid":"MONDO:0004736"},{"relation_name":"is_a","term_name":"inborn disorder of amino acid and other organic acid metabolism","termid":"MONDO:0019189"},{"relation_name":"is_a","term_name":"disorder of organic acid metabolism","termid":"MONDO:0045022"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00674":null,"SJAG_03293":null,"SJAG_03434":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"gamma-amino butyric acid metabolism disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:18955","icd11.foundation:1811657969","Orphanet:79175","MEDGEN:1842586","UMLS:C4702813"],"termid":"MONDO:0000698","terms_by_termid":{"MONDO:0010083":null,"MONDO:0013166":null},"xrefs":{"Monarch":{"xref_id":"0000698"}}}


id: GO:0038034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the absence of a ligand or the withdrawal of a ligand from a receptor.","definition_xrefs":["PMID:15044679","GOC:ppm","GOC:al","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"signal transduction in absence of ligand","synonyms":[{"name":"addiction receptor signaling pathway","type":"broad"},{"name":"basal signaling","type":"narrow"},{"name":"dependence receptor signaling pathway","type":"broad"},{"name":"negative signal transduction","type":"related"},{"name":"non-classical signal transduction","type":"broad"},{"name":"signal transduction in absence of agonist","type":"exact"}],"termid":"GO:0038034"}


id: MONDO:0010404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked non progressive cerebellar ataxia is a rare hereditary ataxia characterized by delayed early motor development, severe neonatal hypotonia, non-progressive ataxia and slow eye movements, presenting normal cognitive abilities and absence of pyramidal signs. Frequently patients also manifest intention tremor, mild dysphagia, and dysarthria. Brain MRI reveals global cerebellar atrophy with absence of other malformations or degenerations of the central and peripheral nervous systems.","definition_xrefs":["Orphanet:314978"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked cerebellar ataxia","termid":"MONDO:0016612"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked non progressive cerebellar ataxia","secondary_identifiers":["GARD:17439","DOID:0111833","OMIM:300703","MEDGEN:394718","MESH:C567478","SCTID:766818009","UMLS:C2678048"],"synonyms":[{"name":"SCAX5","type":"exact"},{"name":"X-linked spinocerebellar ataxia type 5","type":"exact"},{"name":"spinocerebellar ataxia, X-linked 5","type":"related"},{"name":"spinocerebellar ataxia, X-linked 5, X-linked recessive","type":"exact"}],"termid":"MONDO:0010404","xrefs":{"Monarch":{"xref_id":"0010404"}}}


id: PBO:0031533
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine_amidase_activity","termid":"PBO:0031533"}


id: GO:0102984
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sulfonatoacetaldehyde + H2O + NAD = sulfonatoacetate + NADH + 2 H+.","definition_xrefs":["GOC:pz","EC:1.2.1.73"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"sulfoacetaldehyde dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-9592","RHEA:25637"],"termid":"GO:0102984"}


id: PBO:0066494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret finger protein like 4A pseudogene 5","termid":"PBO:0066494"}


id: PBO:0084953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; promotes ubiquitin-dependent proteolysis of Ira2p; regulated by G-alpha protein Gpa2p; GPB1 has a paralog, GPB2, that arose from the whole genome duplication","termid":"PBO:0084953"}


id: PBO:0091767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating type M-specific HMG-box DNA-binding transcription factor Mc at silenced MAT3 locus","termid":"PBO:0091767"}


id: PBO:0060527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear autoantigenic sperm protein pseudogene 1","termid":"PBO:0060527"}


id: PBO:0028920
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_transcription_during_glucose_starvation_and_oxidative_stress","termid":"PBO:0028920"}


id: PBO:0079653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2V1 pseudogene 1","termid":"PBO:0079653"}


id: GO:0019939
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-cysteine to form peptidyl-S-palmitoleyl-L-cysteine specifically.","definition_xrefs":["RESID:AA0308"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-S-palmitoleyl-L-cysteine biosynthetic process from peptidyl-cysteine (obsolete GO:0019939)","synonyms":[{"name":"peptidyl-S-palmitoleyl-L-cysteine anabolism from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-S-palmitoleyl-L-cysteine formation from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-S-palmitoleyl-L-cysteine synthesis from peptidyl-cysteine","type":"exact"}],"termid":"GO:0019939"}


id: PBO:0035840
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein-protein_interaction_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0035840"}


id: PBO:0084368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lipid-interacting protein in SNARE complex assembly machinery; acts at late step in secretion; interacts with membranes through two distinct binding sites; shows genetic and physical interactions with Sec1p; required for prospore membrane formation during sporulation; N-terminus closely associates with plasma membrane, C-terminus colocalizes with Sec4p on intracellular membranes; relocalizes from bud neck to nucleus upon DNA replication stress","termid":"PBO:0084368"}


id: GO:0004913
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with interleukin-4 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:jl","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"interleukin-4 receptor activity","synonyms":[{"name":"IL-4 receptor activity","type":"exact"},{"name":"IL-4R","type":"exact"}],"termid":"GO:0004913"}


id: GO:0098892
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of the postsynaptic specialization membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:autophagy","GOC:mf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of postsynaptic membrane","termid":"GO:0098890"},{"relation_name":"part_of","term_name":"postsynaptic specialization membrane","termid":"GO:0099634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"extrinsic component of postsynaptic specialization membrane","termid":"GO:0098892"}


id: MONDO:0003420
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An epithelial, usually multiloculated neoplasm arising from the intrahepatic or extrahepatic bile ducts. It occurs predominantly in females. Signs and symptoms include abdominal mass, abdominal pain, and jaundice. Morphologically, the cystic spaces are lined by columnar epithelium and contain mucinous or serous fluid.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cystadenoma","termid":"MONDO:0002369"},{"relation_name":"is_a","term_name":"bile duct adenoma","termid":"MONDO:0006108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"bile duct cystadenoma","secondary_identifiers":["UMLS:C0334285","ICDO:8161/0","MEDGEN:90756","NCIT:C4129","DOID:5384"],"synonyms":[{"name":"bile duct cystadenoma","type":"exact"},{"name":"bile duct cystadenoma (morphologic abnormality)","type":"exact"},{"name":"bile duct mucinous cystic neoplasm","type":"exact"},{"name":"cystadenoma of bile duct","type":"exact"},{"name":"cystadenoma of the bile duct","type":"exact"}],"termid":"MONDO:0003420","xrefs":{"Monarch":{"xref_id":"0003420"}}}


id: PR:Q09863
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nst1 gene.","definition_xrefs":["UniProtKB:Q09863","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stress response protein nst1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29E6.10c","synonyms":[{"name":"Spom972h-nst1","type":"exact"}],"termid":"PR:Q09863"}


id: PBO:0028895
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_antisense_primary_transcript_splicing","termid":"PBO:0028895"}


id: PBO:0091017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudouridine-5'-phosphatase Pud1","termid":"PBO:0091017"}


id: PBO:0048120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fucosyltransferase 1 (H blood group)","termid":"PBO:0048120"}


id: PBO:0064340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasmalemma vesicle associated protein","termid":"PBO:0064340"}


id: PBO:0058627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6759","termid":"PBO:0058627"}


id: GO:0060262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate frequency or extent of the covalent attachment of a palmitoyl group to the N-terminal amino acid residue of a protein.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of N-terminal protein palmitoylation","termid":"GO:0060254"},{"relation_name":"is_a","term_name":"negative regulation of protein lipidation","termid":"GO:1903060"},{"relation_name":"negatively_regulates","term_name":"N-terminal protein palmitoylation","termid":"GO:0006500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of N-terminal protein palmitoylation","termid":"GO:0060262"}


id: GO:0016427
data:
  {"annotated_genes":["SJAG_00325","SJAG_01269","SJAG_01314","SJAG_02099","SJAG_00499","SJAG_04453"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[65509],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106340"},{"annotations":[78876,109955],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052735"},{"annotations":[79269,70167,105585],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016428"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methylcytosine.","definition_xrefs":["GOC:go-curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA methyltransferase activity","termid":"GO:0008175"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00325":null,"SJAG_00499":null,"SJAG_01269":null,"SJAG_01314":null,"SJAG_02099":null,"SJAG_04453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0140101","GO:0003824","GO:0140098","GO:0016741"],"is_obsolete":false,"name":"tRNA (cytidine) methyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"tRNA (cytosine) methyltransferase activity","type":"exact"}],"termid":"GO:0016427","terms_by_termid":{"GO:0016428":null,"GO:0052735":null,"GO:0106340":null}}


id: PR:Q9UTR6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- och1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTR6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"initiation-specific alpha-1,6-mannosyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1006.05c","synonyms":[{"name":"Spom972h-och1","type":"exact"}],"termid":"PR:Q9UTR6"}


id: MONDO:0006111
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-papillary neoplasm of the urinary bladder, whose classification categories include low-grade intraurothelial neoplasia and urothelial carcinoma in situ.","definition_xrefs":["NCIT:C37266"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary bladder neoplasm","termid":"MONDO:0004987"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bladder flat intraepithelial lesion","secondary_identifiers":["EFO:1000126","MEDGEN:231947","DOID:5429","UMLS:C1332559"],"synonyms":[{"name":"bladder flat intraepithelial lesion","type":"exact"},{"name":"flat intraepithelial lesion of the bladder","type":"exact"},{"name":"flat intraepithelial lesion of the urinary bladder","type":"exact"},{"name":"urinary bladder flat intraepithelial lesion","type":"exact"}],"termid":"MONDO:0006111","xrefs":{"Monarch":{"xref_id":"0006111"}}}


id: PBO:0002911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3, human WDR59 ortholog","termid":"PBO:0002911"}


id: GO:0004946
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with bombesin to initiate a change in cell activity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor activity","termid":"GO:0008188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"bombesin receptor activity","termid":"GO:0004946"}


id: GO:0035373
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a chondroitin sulfate proteoglycan, any proteoglycan containing chondroitin sulfate as the glycosaminoglycan carbohydrate unit.","definition_xrefs":["GOC:kmv","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosaminoglycan binding","termid":"GO:0005539"},{"relation_name":"is_a","term_name":"proteoglycan binding","termid":"GO:0043394"},{"relation_name":"is_a","term_name":"sulfur compound binding","termid":"GO:1901681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"chondroitin sulfate proteoglycan binding","termid":"GO:0035373"}


id: SO:0001524
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"When a genome contains an abnormal amount of chromosomes.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_genome","termid":"SO:0001506"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosomally_aberrant_genome","synonyms":[{"name":"chromosomally aberrant genome","type":"related"}],"termid":"SO:0001524"}


id: MOD:01467
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:302#K","PubMed:15939799"],"direct_ancestors":[{"relation_name":"is_a","term_name":"menadione quinone derivative","termid":"MOD:00621"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"menadione quinone derivative - site K","synonyms":[{"name":"Menadione","type":"related"},{"name":"Menadione quinone derivative","type":"related"}],"termid":"MOD:01467"}


id: GO:1902916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein polyubiquitination.","definition_xrefs":["GOC:di","GOC:TermGenie","GO_REF:0000058","PMID:23645667"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein ubiquitination","termid":"GO:0031398"},{"relation_name":"is_a","term_name":"regulation of protein polyubiquitination","termid":"GO:1902914"},{"relation_name":"positively_regulates","term_name":"protein polyubiquitination","termid":"GO:0000209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"positively_regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein polyubiquitination","synonyms":[{"name":"activation of polyubiquitin","type":"related"},{"name":"activation of protein polyubiquitination","type":"narrow"},{"name":"activation of protein polyubiquitinylation","type":"narrow"},{"name":"activation of protein polyubiquitylation","type":"narrow"},{"name":"positive regulation of polyubiquitin","type":"related"},{"name":"positive regulation of protein polyubiquitinylation","type":"exact"},{"name":"positive regulation of protein polyubiquitylation","type":"exact"},{"name":"up regulation of polyubiquitin","type":"related"},{"name":"up regulation of protein polyubiquitination","type":"exact"},{"name":"up regulation of protein polyubiquitinylation","type":"exact"},{"name":"up regulation of protein polyubiquitylation","type":"exact"},{"name":"up-regulation of polyubiquitin","type":"related"},{"name":"up-regulation of protein polyubiquitination","type":"exact"},{"name":"up-regulation of protein polyubiquitinylation","type":"exact"},{"name":"up-regulation of protein polyubiquitylation","type":"exact"},{"name":"upregulation of polyubiquitin","type":"related"},{"name":"upregulation of protein polyubiquitination","type":"exact"},{"name":"upregulation of protein polyubiquitinylation","type":"exact"},{"name":"upregulation of protein polyubiquitylation","type":"exact"}],"termid":"GO:1902916"}


id: PBO:0015234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 involved in sporulation Dbl4","termid":"PBO:0015234"}


id: GO:0000711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"During meiosis, the synthesis of DNA proceeding from the broken 3' single-strand DNA end that uses the homologous intact duplex as the template.","definition_xrefs":["GOC:elh","PMID:9334324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA synthesis involved in DNA repair","termid":"GO:0000731"},{"relation_name":"is_a","term_name":"meiosis I cell cycle process","termid":"GO:0061982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0007049","GO:0006281","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"meiotic DNA repair synthesis","termid":"GO:0000711"}


id: PATO:0020001
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genotypic sex","termid":"PATO:0020000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"male genotypic sex","termid":"PATO:0020001"}


id: PBO:0011495
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"merged with ncRNA SPNCRNA.106","termid":"PBO:0011495"}


id: PBO:0088756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrillarin, rRNA and histone methyltransferase","termid":"PBO:0088756"}


id: GO:0051054
data:
  {"annotated_genes":["SJAG_03048","SJAG_01584","SJAG_00364","SJAG_03300","SJAG_03160","SJAG_03720","SJAG_00100","SJAG_00995","SJAG_03438","SJAG_00823","SJAG_04457","SJAG_02104","SJAG_02074","SJAG_03624","SJAG_03957","SJAG_02214","SJAG_00266","SJAG_03695"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107768],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010846"},{"annotations":[117086,111834],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045739"},{"annotations":[111835,117087,103112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903468"},{"annotations":[109981,93642],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000781"},{"annotations":[107206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001034"},{"annotations":[88807,106419,102163,116042],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904514"},{"annotations":[108159,102166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905263"},{"annotations":[95507],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090297"},{"annotations":[102167],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903465"},{"annotations":[79195],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045951"},{"annotations":[88746,105930,116228],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120292"},{"annotations":[88808],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010845"},{"annotations":[96959],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032215"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving DNA.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of macromolecule metabolic process","termid":"GO:0010604"},{"relation_name":"is_a","term_name":"positive regulation of nucleobase-containing compound metabolic process","termid":"GO:0045935"},{"relation_name":"is_a","term_name":"regulation of DNA metabolic process","termid":"GO:0051052"},{"relation_name":"positively_regulates","term_name":"DNA metabolic process","termid":"GO:0006259"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00100":null,"SJAG_00266":null,"SJAG_00364":null,"SJAG_00823":null,"SJAG_00995":null,"SJAG_01584":null,"SJAG_02074":null,"SJAG_02104":null,"SJAG_02214":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03300":null,"SJAG_03438":null,"SJAG_03624":null,"SJAG_03695":null,"SJAG_03720":null,"SJAG_03957":null,"SJAG_04457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"positive regulation of DNA metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"activation of DNA metabolic process","type":"narrow"},{"name":"positive regulation of DNA metabolism","type":"exact"},{"name":"stimulation of DNA metabolic process","type":"narrow"},{"name":"up regulation of DNA metabolic process","type":"exact"},{"name":"up-regulation of DNA metabolic process","type":"exact"},{"name":"upregulation of DNA metabolic process","type":"exact"}],"termid":"GO:0051054","terms_by_termid":{"GO:0010845":null,"GO:0010846":null,"GO:0032215":null,"GO:0045739":null,"GO:0045951":null,"GO:0090297":null,"GO:0120292":null,"GO:1903465":null,"GO:1903468":null,"GO:1904514":null,"GO:1905263":null,"GO:2000781":null,"GO:2001034":null}}


id: PBO:0058343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4716","termid":"PBO:0058343"}


id: PBO:0056375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 8 interacting protein 2","termid":"PBO:0056375"}


id: MONDO:0100180
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing diabetes mellitus, ketosis.","definition_xrefs":["MONDO:patterns/inherited_susceptibility"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diabetes mellitus, ketosis-prone","secondary_identifiers":["OMIM:612227","MEDGEN:1381503","UMLS:C3837958"],"synonyms":[{"name":"KPD","type":"exact"},{"name":"diabetes mellitus, ketosis-prone","type":"exact"},{"name":"diabetes mellitus, ketosis-prone, susceptibility to","type":"exact"}],"termid":"MONDO:0100180","xrefs":{"Monarch":{"xref_id":"0100180"}}}


id: PBO:0083484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene UIP4/YPL186C","termid":"PBO:0083484"}


id: GO:0140835
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + RNA polymerase II large subunit CTD heptapeptide repeat (consensus YSPTSPS) = ADP + H+ + RNA polymerase II large subunit phosphothreonine (position 4).","definition_xrefs":["PMID:28248323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II CTD heptapeptide repeat kinase activity","termid":"GO:0008353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016301","GO:0016740","GO:0003824","GO:0004672","GO:0140096"],"is_obsolete":false,"name":"RNA polymerase II CTD heptapeptide repeat T4 kinase activity","synonyms":[{"name":"RNA polymerase II C-terminal domain T4 kinase activity","type":"exact"}],"termid":"GO:0140835"}


id: PR:O13732
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A trafficking protein particle complex subunit 2-like protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C15A10.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC15A10.12c","secondary_identifiers":["UniProtKB:O13732"],"synonyms":[{"name":"Spom972h-TRAPPC2L","type":"exact"}],"termid":"PR:O13732"}


id: SO:0001441
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-polar, hydorophobic amino acid encoded by the codons TTT and TTC.","direct_ancestors":[{"relation_name":"is_a","term_name":"amino_acid","termid":"SO:0001237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phenylalanine","synonyms":[{"name":"F","type":"exact"},{"name":"Phe","type":"exact"}],"termid":"SO:0001441"}


id: GO:0047960
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycine + H2O + NAD+ = glyoxylate + NH3 + NADH.","definition_xrefs":["EC:1.4.1.10","MetaCyc:GLYCINE-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor","termid":"GO:0016639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"glycine dehydrogenase activity","secondary_identifiers":["RHEA:15721"],"synonyms":[{"name":"glycine:NAD+ oxidoreductase (deaminating)","type":"related"}],"termid":"GO:0047960"}


id: FYPO:0006886
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a protein measured at or associated with the mitotic spindle is greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle","termid":"FYPO:0000338"},{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0006551","FYPO:0000120","FYPO:0005447","FYPO:0001320","FYPO:0002399","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased protein level at mitotic spindle","synonyms":[{"name":"increased protein level at mitotic spindle during mitotic cell cycle","type":"related"},{"name":"increased protein level at mitotic spindle during vegetative growth","type":"exact"},{"name":"increased protein level in mitotic spindle","type":"exact"},{"name":"protein accumulation at mitotic spindle","type":"exact"}],"termid":"FYPO:0006886"}


id: PBO:0079320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 10","termid":"PBO:0079320"}


id: GO:0030713
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Development of ovarian follicle cells to create the interfollicular stalks that connect the egg chambers of progressive developmental stages. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","PMID:10822261"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"part_of","term_name":"follicle cell of egg chamber development","termid":"GO:0030707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"follicle cell of egg chamber stalk formation","termid":"GO:0030713"}


id: GO:2000087
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mesonephric glomerulus development.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesonephros development","termid":"GO:0061217"},{"relation_name":"is_a","term_name":"regulation of glomerulus development","termid":"GO:0090192"},{"relation_name":"regulates","term_name":"mesonephric glomerulus development","termid":"GO:0061224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesonephric glomerulus development","termid":"GO:2000087"}


id: MONDO:0021094
data:
  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id: MONDO:0042496
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Poisoning caused by ingesting ergotized grain or by the misdirected or excessive use of ergot as a medicine.","definition_xrefs":["MESH:D004881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mycotoxicosis","termid":"MONDO:0042497"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ergotism","secondary_identifiers":["icd11.foundation:1013848192","ICD9:988.2","SCTID:51510002"],"synonyms":[{"name":"Saint Anthony fire","type":"related"},{"name":"Saint Anthony's fire","type":"related"},{"name":"Saint Anthonys fire","type":"related"},{"name":"St Anthony's fire","type":"related"},{"name":"St. Anthony fire","type":"related"},{"name":"St. Anthony's fire","type":"related"},{"name":"St. Anthonys fire","type":"related"},{"name":"ergot poisoning","type":"related"},{"name":"ergot poisonings","type":"related"},{"name":"ergotism","type":"exact"},{"name":"ergotisms","type":"related"},{"name":"fire, St. Anthonys","type":"related"},{"name":"poisoning, ergot","type":"related"},{"name":"poisonings, ergot","type":"related"}],"termid":"MONDO:0042496","xrefs":{"Monarch":{"xref_id":"0042496"}}}


id: GO:0015673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of silver (Ag+) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transition metal ion transport","termid":"GO:0000041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"silver ion transport","synonyms":[{"name":"silver transport","type":"exact"}],"termid":"GO:0015673"}


id: PBO:0064475
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase gamma, catalytic subunit","termid":"PBO:0064475"}


id: PBO:0077833
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP73 antisense RNA 1","termid":"PBO:0077833"}


id: GO:0080180
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id: MONDO:0016412
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Peripheral hypothyroidism is a type of permanent congenital hypothyroidism, a permanent thyroid hormone deficiency that is present from birth, that results from peripheral defects in thyroid hormone metabolism.","definition_xrefs":["Orphanet:226310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"permanent congenital hypothyroidism","termid":"MONDO:0016408"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peripheral hypothyroidism","secondary_identifiers":["MEDGEN:1843430","UMLS:C5704669"],"termid":"MONDO:0016412","xrefs":{"Monarch":{"xref_id":"0016412"}}}


id: GO:0009989
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell recognition that involves the interaction of the cell with the extracellular matrix.","definition_xrefs":["ISBN:0824072820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell recognition","termid":"GO:0008037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell-matrix recognition","termid":"GO:0009989"}


id: PR:O13939
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An AP-3 complex subunit beta-1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-3 complex subunit beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H3.06","secondary_identifiers":["UniProtKB:O13939"],"synonyms":[{"name":"SPAC23H3.06","type":"related"},{"name":"Spom972h-AP3B1","type":"exact"},{"name":"adaptor-related protein complex 3 subunit beta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"beta-3-adaptin (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"clathrin assembly protein complex 3 beta large chain (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"clathrin assembly protein large beta chain (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13939"}


id: GO:0075294
data:
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id: GO:0048522
data:
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id: RO:0002453
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id: PBO:0048735
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id: MONDO:0010306
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id: PBO:0063967
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id: MONDO:0002261
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id: MONDO:0001193
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id: MONDO:0018494
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id: FYPO:0007620
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal when the cell is subject to oxidative stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"decreased protein phosphorylation during cellular response to oxidative stress","synonyms":[{"name":"decreased protein phosphorylation during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"decreased protein phosphorylation during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"decreased protein phosphorylation during oxidative stress response","type":"exact"},{"name":"reduced protein phosphorylation during cellular response to oxidative stress","type":"exact"}],"termid":"FYPO:0007620"}


id: PBO:0039849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 16 pseudogene","termid":"PBO:0039849"}


id: PBO:0064924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP5 tetratricopeptide repeat domain containing 1, pseudogene","termid":"PBO:0064924"}


id: GO:0075264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of oogonium development, a process that leads to the formation of a female gametangium of oomycetes, containing one or more gametes.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of spore-bearing organ development","termid":"GO:0075260"},{"relation_name":"regulates","term_name":"oogonium development","termid":"GO:0075263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of oogonium development","termid":"GO:0075264"}


id: PBO:0026991
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_galactose:mannose_ratio_in_glycoprotein_glycan","termid":"PBO:0026991"}


id: SO:0001538
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant which alters the functioning of a transcript with respect to a reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_abnormal","termid":"SO:0002218"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_function_variant","synonyms":[{"name":"transcript function variant","type":"exact"}],"termid":"SO:0001538"}


id: PBO:0079817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"up-regulated in colorectal cancer liver metastasis","termid":"PBO:0079817"}


id: RO:HOM0000032
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Paedomorphosis that is produced by a retardation of somatic development.","definition_xrefs":["ISBN:978-0674639416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in_paedomorphorsis_relationship_with","termid":"RO:HOM0000029"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_neoteny_relationship_with","synonyms":[{"name":"juvenilization","type":"exact"},{"name":"neotenous to","type":"exact"}],"termid":"RO:HOM0000032"}


id: MOD:01732
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an N'-hydrogen atom of a histidine residue with the Proteome Sciences TMT6plex-127 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent N-acylated residue","termid":"MOD:01717"},{"relation_name":"is_a","term_name":"TMT6plex-127 reporter+balance reagent acylated residue","termid":"MOD:01728"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMT6plex-127 reporter+balance reagent N'-acylated histidine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01732"}


id: PATO:0002519
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone.","definition_xrefs":["TheFreeDictionary:cancellous"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancellous","termid":"PATO:0002519"}


id: PBO:0002782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex histone acetyltransferase catalytic subunit Gcn5","termid":"PBO:0002782"}


id: PBO:0029839
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cytoskeleton_during_vegetative_growth","termid":"PBO:0029839"}


id: PBO:0057976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3691","termid":"PBO:0057976"}


id: MONDO:0008669
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"allergic disease","termid":"MONDO:0005271"},{"relation_name":"is_a","term_name":"vulvovaginitis","termid":"MONDO:0007019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"vulvovaginitis, allergic seminal","secondary_identifiers":["MESH:C565993","UMLS:C1860357","OMIM:193450","MEDGEN:348089"],"synonyms":[{"name":"vulvovaginitis, allergic seminal","type":"exact"}],"termid":"MONDO:0008669","xrefs":{"Monarch":{"xref_id":"0008669"}}}


id: PBO:0079520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosinase like (pseudogene)","termid":"PBO:0079520"}


id: MONDO:0024619
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infectious process that affects the brain and/or spinal cord. Representative examples include encephalitis, poliomyelitis, arachnoiditis, and meningitis.","definition_xrefs":["NCIT:C27582"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system disorder","termid":"MONDO:0002602"},{"relation_name":"is_a","term_name":"infectious disorder of the nervous system","termid":"MONDO:0020010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"central nervous system infectious disorder","secondary_identifiers":["EFO:1001456","MEDGEN:1684837","ICD9:349.89","SCTID:128117002","UMLS:C4759823","MESH:D002494"],"synonyms":[{"name":"central nervous system infection","type":"related"},{"name":"central nervous system infectious disease","type":"exact"},{"name":"central nervous system infectious disorder","type":"exact"},{"name":"infections, central nervous system","type":"related"},{"name":"infectious disease of central nervous system","type":"exact"}],"termid":"MONDO:0024619","xrefs":{"Monarch":{"xref_id":"0024619"}}}


id: FYPO:0005160
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cell cycle progression is normal (i.e. indistinguishable from wild type) after exposure to hydroxyurea.","definition_xrefs":["PomBase:mah","PMID:16849602"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal cell cycle progression following cellular response to hydroxyurea","synonyms":[{"name":"normal cell cycle progression following HU exposure","type":"exact"},{"name":"normal cell cycle progression following cellular response to HU","type":"exact"}],"termid":"FYPO:0005160"}


id: GO:1900524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of flocculation via cell wall protein-carbohydrate interaction process by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:10591965","GOC:dgf","PMID:15466424","GOC:TermGenie","PMID:16568252"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:1900524)","synonyms":[{"name":"activation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"up regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of flocculation via cell wall protein-carbohydrate interaction by positive regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900524"}


id: PATO:0001154
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongated","termid":"PATO:0001154"}


id: MOD:00611
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by reaction of iodouridine monophosphate with a residue.","definition_xrefs":["PubMed:6540775","Unimod:292","PubMed:11112526","PubMed:11567090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodouridine monophosphate derivatized residue","synonyms":[{"name":"Cross-link of (Iodo)-uracil MP with W,F,Y","type":"related"},{"name":"IodoU-AMP","type":"related"}],"termid":"MOD:00611"}


id: PBO:0058248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4536-1","termid":"PBO:0058248"}


id: GO:1903095
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of ribonuclease III activity.","definition_xrefs":["PMID:22393237","GO_REF:0000088","GOC:bhm","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoribonuclease complex","termid":"GO:1902555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"ribonuclease III complex","termid":"GO:1903095"}


id: MONDO:0015647
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Thinking seizures is a rare neurologic disease characterized by seizures induced by specific cognitive tasks, such as calculation or solving arithmetic problems (e.g Sudoku puzzle), playing thinking games (e.g. Rubik's cube, chess, cards), thinking, making decisions and abstract reasoning. Idiopathic generalized seizures are mainly involved, but partial epilepsies may, in rare cases, be observed.","definition_xrefs":["Orphanet:166424"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reflex epilepsy","termid":"MONDO:0017768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"thinking seizures","secondary_identifiers":["SCTID:763622006","UMLS:C4706523","MEDGEN:1647683","GARD:20080"],"termid":"MONDO:0015647","xrefs":{"Monarch":{"xref_id":"0015647"}}}


id: MONDO:0030266
data:
  {"annotated_genes":["SJAG_00399"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86268],"is_not":false,"summary":null,"term":"MONDO:0030266"}]},"cv_name":"mondo","definition":"An autosomal recessive immunologic disorder with variable manifestations. One patient with infantile-onset of chronic cytomegalovirus (CMV) infection associated with severely decreased NK cells has been reported. Another family with 3 affected fetuses showing restrictive cardiomyopathy and hypoplasia of the spleen and thymus has also been reported.","definition_xrefs":["OMIM:619313"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00399":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 80 with or without congenital cardiomyopathy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1786417","UMLS:C5543344"],"synonyms":[{"name":"IMD80","type":"exact"},{"name":"MCM10 deficiency","type":"exact"},{"name":"immunodeficiency 80 with or without cardiomyopathy","type":"exact"},{"name":"immunodeficiency 80 with or without congenital cardiomyopathy","type":"exact"},{"name":"immunodeficiency with or without congenital cardiomyopathy","type":"exact"}],"termid":"MONDO:0030266","terms_by_termid":{"MONDO:0030266":null},"xrefs":{"Monarch":{"xref_id":"0030266"}}}


id: GO:0050824
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to water (H2O).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete water binding (obsolete GO:0050824)","termid":"GO:0050824"}


id: PBO:0038642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA thioesterase 9","termid":"PBO:0038642"}


id: PBO:0076219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfite oxidase","termid":"PBO:0076219"}


id: PBO:0039340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alsin Rho guanine nucleotide exchange factor ALS2","termid":"PBO:0039340"}


id: FYPO:0003439
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms a septum that has branches. For example, the septum may be Y-shaped.","definition_xrefs":["PMID:24798735","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum morphology during vegetative growth","termid":"FYPO:0002023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0000032","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"branched septum","synonyms":[{"name":"branched septum during mitotic cell cycle","type":"related"},{"name":"branched septum during vegetative growth","type":"exact"}],"termid":"FYPO:0003439"}


id: PATO:0000442
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep.","definition_xrefs":["WordNet:WordNet"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000442 insomnia (obsolete PATO:0000442)","termid":"PATO:0000442"}


id: PR:Q9Y7Y0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- der1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7Y0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized derlin-like protein C365.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC365.08c","synonyms":[{"name":"Spom972h-der1","type":"exact"}],"termid":"PR:Q9Y7Y0"}


id: MONDO:0008417
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"sclerocornea","termid":"MONDO:0019629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"sclerocornea, autosomal dominant","secondary_identifiers":["MEDGEN:356662","MESH:C566692","OMIM:181700","UMLS:C1866984"],"synonyms":[{"name":"sclerocornea, autosomal dominant","type":"exact"}],"termid":"MONDO:0008417","xrefs":{"Monarch":{"xref_id":"0008417"}}}


id: SO:0000269
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has a serine anticodon, and a 3' serine binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"serine_tRNA_primary_transcript","termid":"SO:0000226"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seryl_tRNA","synonyms":[{"name":"seryl tRNA","type":"exact"},{"name":"seryl-transfer RNA","type":"exact"},{"name":"seryl-transfer ribonucleic acid","type":"related"}],"termid":"SO:0000269"}


id: GO:0018975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 2,4,6-trinitrotoluene, 1-methyl-2,4,6-trinitrobenzene, a highly explosive pale yellow crystalline solid, that occur in the absence of oxygen.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2,4,6-trinitrotoluene metabolic process","termid":"GO:0018974"},{"relation_name":"is_a","term_name":"toluene-containing compound catabolic process","termid":"GO:0072491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anaerobic 2,4,6-trinitrotoluene metabolic process","secondary_identifiers":["UM-BBD_pathwayID:tnt2"],"synonyms":[{"name":"anaerobic 2,4,6-trinitrotoluene metabolism","type":"exact"}],"termid":"GO:0018975"}


id: GO:0060212
data:
  {"annotated_genes":["SJAG_02370"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91426],"is_not":false,"summary":null,"term":"GO:0060212"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nuclear-transcribed mRNA poly(A) tail shortening","termid":"GO:0060211"},{"relation_name":"is_a","term_name":"negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay","termid":"GO:1900152"},{"relation_name":"negatively_regulates","term_name":"nuclear-transcribed mRNA poly(A) tail shortening","termid":"GO:0000289"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02370":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0016071"],"is_obsolete":false,"name":"negative regulation of nuclear-transcribed mRNA poly(A) tail shortening","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of 3' to 5' mRNA deadenylation","type":"related"},{"name":"negative regulation of mRNA deadenylation","type":"related"},{"name":"negative regulation of nuclear mRNA poly(A) tail shortening","type":"related"}],"termid":"GO:0060212","terms_by_termid":{"GO:0060212":null}}


id: PATO:0000140
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"position","secondary_identifiers":["PATO:0001032","PATO:0001631"],"synonyms":[{"name":"location","type":"exact"},{"name":"placement","type":"exact"},{"name":"relational spatial quality","type":"exact"}],"termid":"PATO:0000140"}


id: MONDO:0013979
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ciliary dyskinesia in which the cause of the disease is a mutation in the LRRC6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia","termid":"MONDO:0016575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia 19","secondary_identifiers":["GARD:15883","DOID:0110608","MEDGEN:762332","UMLS:C3543826","OMIM:614935"],"synonyms":[{"name":"CILD19","type":"exact"},{"name":"LRRC6 primary ciliary dyskinesia","type":"exact"},{"name":"ciliary dyskinesia, primary, 19","type":"related"},{"name":"ciliary dyskinesia, primary, 19, with or without situs inversus","type":"related"},{"name":"ciliary dyskinesia, primary, type 19","type":"exact"},{"name":"primary ciliary dyskinesia 19","type":"exact"},{"name":"primary ciliary dyskinesia 19 with or without situs inversus","type":"exact"},{"name":"primary ciliary dyskinesia caused by mutation in LRRC6","type":"exact"},{"name":"primary ciliary dyskinesia type 19","type":"exact"}],"termid":"MONDO:0013979","xrefs":{"Monarch":{"xref_id":"0013979"}}}


id: MONDO:0027749
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpinopathy","secondary_identifiers":["UMLS:C5680704","GARD:20683","MEDGEN:1842372","Orphanet:250805"],"termid":"MONDO:0027749","xrefs":{"Monarch":{"xref_id":"0027749"}}}


id: GO:0005796
data:
  {"annotated_genes":["SJAG_02495","SJAG_04528","SJAG_00751"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[75343,101969,117448],"is_not":false,"summary":null,"term":"GO:0005796"}]},"cv_name":"cellular_component","definition":"The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular organelle lumen","termid":"GO:0070013"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00751":null,"SJAG_02495":null,"SJAG_04528":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005794"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005794"],"is_obsolete":false,"name":"Golgi lumen","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Golgi apparatus lumen","type":"exact"}],"termid":"GO:0005796","terms_by_termid":{"GO:0005796":null}}


id: GO:0103020
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-deoxy-D-xylulose + ATP = H+ + 1-deoxy-D-xylulose 5-phosphate + ADP.","definition_xrefs":["GOC:pz","PMID:11168365","PMID:16920870"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"1-deoxy-D-xylulose kinase activity","secondary_identifiers":["MetaCyc:RXN0-382","RHEA:27990"],"termid":"GO:0103020"}


id: GO:0019761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-glycoside biosynthetic process","termid":"GO:0016144"},{"relation_name":"is_a","term_name":"glucosinolate metabolic process","termid":"GO:0019760"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"glucosinolate biosynthetic process","synonyms":[{"name":"glucosinolate anabolism","type":"exact"},{"name":"glucosinolate biosynthesis","type":"exact"},{"name":"glucosinolate formation","type":"exact"},{"name":"glucosinolate synthesis","type":"exact"}],"termid":"GO:0019761"}


id: PATO:0001500
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sharp","termid":"PATO:0001419"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tapered","synonyms":[{"name":"taper","type":"exact"}],"termid":"PATO:0001500"}


id: MONDO:0975745
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with characteristic facial and ectodermal features and tetraparesis 1","secondary_identifiers":["OMIM:620888"],"termid":"MONDO:0975745","xrefs":{"Monarch":{"xref_id":"0975745"}}}


id: PBO:0060981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nerve growth factor receptor","termid":"PBO:0060981"}


id: MONDO:0018126
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, genetic epilepsy syndrome characterized by neonatal or early infantile onset of severe, progressive, typically frequent and prolonged myoclonic seizures that are refractory to treatment, associated with localized and/or generalized paroxysmal dystonia (which later becomes persistent). Other features include severe hypotonia, hemiplegia, psychomotor regression (or lack of psychomotor development) and progressive cerebral and cerebellar atrophy, with affected individuals becoming progressively non-reactive to environmental stimuli.","definition_xrefs":["Orphanet:352596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infantile epilepsy syndrome","termid":"MONDO:0020071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"progressive myoclonic epilepsy with dystonia","secondary_identifiers":["UMLS:C4706413","GARD:17522","SCTID:763349002","MEDGEN:1642042"],"synonyms":[{"name":"PMED","type":"exact"},{"name":"progressive myoclonus epilepsy with dystonia","type":"exact"}],"termid":"MONDO:0018126","xrefs":{"Monarch":{"xref_id":"0018126"}}}


id: GO:1904814
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein localization to chromosome, telomeric region.","definition_xrefs":["GOC:BHF_telomere","PMID:19487455","GOC:nc","GOC:TermGenie","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization","termid":"GO:0032880"},{"relation_name":"regulates","term_name":"protein localization to chromosome, telomeric region","termid":"GO:0070198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein localization to chromosome, telomeric region","synonyms":[{"name":"regulation of protein localisation to chromosome, telomeric region","type":"exact"},{"name":"regulation of protein localization to telomere","type":"exact"}],"termid":"GO:1904814"}


id: GO:0098704
data:
  {"annotated_genes":["SJAG_00057","SJAG_03960","SJAG_03608"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117020],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098708"},{"annotations":[110443],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140425"},{"annotations":[95528],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106081"},{"annotations":[95530],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106082"}]},"cv_name":"biological_process","definition":"The directed movement of a carbohydrate from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transmembrane transport","termid":"GO:0034219"},{"relation_name":"is_a","term_name":"import across plasma membrane","termid":"GO:0098739"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00057":null,"SJAG_03608":null,"SJAG_03960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"carbohydrate import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0097319"],"synonyms":[{"name":"carbohydrate import into cell","type":"exact"}],"termid":"GO:0098704","terms_by_termid":{"GO:0098708":null,"GO:0106081":null,"GO:0106082":null,"GO:0140425":null}}


id: PBO:0055257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2684","termid":"PBO:0055257"}


id: PBO:0027713
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_branched,_swollen,_elongated_vegetative_cell","termid":"PBO:0027713"}


id: FYPO:0000340
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a single functional copy of a gene does not provide sufficient normal function in a diploid cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"haploinsufficient","synonyms":[{"name":"haploinsufficient during mitotic cell cycle","type":"related"},{"name":"haploinsufficient during vegetative growth","type":"exact"}],"termid":"FYPO:0000340"}


id: GO:0052132
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive aerotaxis on or near host (obsolete GO:0052132)","termid":"GO:0052132"}


id: PBO:0039023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with GTPase domain, ankyrin repeat and PH domain 1","termid":"PBO:0039023"}


id: SO:0000959
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Structural unit composed of a self-replicating, single-stranded, linear DNA molecule.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"linear","termid":"SO:0000987"},{"relation_name":"is_a","term_name":"single_stranded_DNA_chromosome","termid":"SO:0000956"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"linear_single_stranded_DNA_chromosome","synonyms":[{"name":"linear single stranded DNA chromosome","type":"exact"}],"termid":"SO:0000959"}


id: GO:0044750
data:
  {"annotated_genes":["SJAG_04830"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79718],"is_not":false,"summary":null,"term":"GO:0044750"}]},"cv_name":"molecular_function","definition":"Catalysis of the high-affinity transfer of nickel (Ni) cations from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nickel cation transmembrane transporter activity","termid":"GO:0015099"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04830":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"high-affinity nickel cation transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0044750","terms_by_termid":{"GO:0044750":null}}


id: MONDO:1012440
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lethal multi-organ developmental dysplasia, non-human animal","termid":"MONDO:1011785"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lethal multi-organ developmental dysplasia, cattle","secondary_identifiers":["OMIA:001722-9913"],"termid":"MONDO:1012440","xrefs":{"Monarch":{"xref_id":"1012440"}}}


id: PBO:0041957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle and apoptosis regulator 1","termid":"PBO:0041957"}


id: GO:0001916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte mediated cytotoxicity","termid":"GO:0001912"},{"relation_name":"is_a","term_name":"regulation of T cell mediated cytotoxicity","termid":"GO:0001914"},{"relation_name":"is_a","term_name":"positive regulation of T cell mediated immunity","termid":"GO:0002711"},{"relation_name":"positively_regulates","term_name":"T cell mediated cytotoxicity","termid":"GO:0001913"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T cell mediated cytotoxicity","synonyms":[{"name":"activation of T cell mediated cytotoxicity","type":"narrow"},{"name":"positive regulation of T cell mediated apoptosis","type":"exact"},{"name":"positive regulation of T cell mediated cell death","type":"exact"},{"name":"positive regulation of T cell mediated cell killing","type":"exact"},{"name":"positive regulation of T cell mediated cytolysis","type":"related"},{"name":"positive regulation of T lymphocyte mediated cytotoxicity","type":"exact"},{"name":"positive regulation of T-cell mediated apoptosis","type":"exact"},{"name":"positive regulation of T-cell mediated cell death","type":"exact"},{"name":"positive regulation of T-cell mediated cell killing","type":"exact"},{"name":"positive regulation of T-cell mediated cytolysis","type":"related"},{"name":"positive regulation of T-cell mediated cytotoxicity","type":"exact"},{"name":"positive regulation of T-lymphocyte mediated cytotoxicity","type":"exact"},{"name":"stimulation of T cell mediated cytotoxicity","type":"narrow"},{"name":"up regulation of T cell mediated cytotoxicity","type":"exact"},{"name":"up-regulation of T cell mediated cytotoxicity","type":"exact"},{"name":"upregulation of T cell mediated cytotoxicity","type":"exact"}],"termid":"GO:0001916"}


id: GO:0090070
data:
  {"annotated_genes":["SJAG_03241","SJAG_02671"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89211,93254],"is_not":false,"summary":null,"term":"GO:0090070"}]},"cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"regulation of ribosome biogenesis","termid":"GO:0090069"},{"relation_name":"positively_regulates","term_name":"ribosome biogenesis","termid":"GO:0042254"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02671":null,"SJAG_03241":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0042254"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0042254"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0042254"],"is_obsolete":false,"name":"positive regulation of ribosome biogenesis","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0090070","terms_by_termid":{"GO:0090070":null}}


id: MONDO:0035944
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"B-lymphoblastic leukemia/lymphoma with recurrent genetic abnormality","termid":"MONDO:0035605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"B-lymphoblastic leukemia/lymphoma with hypodiploidy","secondary_identifiers":["UMLS:C2698312","GARD:22346","NCIT:C80338","MEDGEN:437498","Orphanet:585942","DOID:0080647"],"synonyms":[{"name":"Hypodiploid ALL","type":"exact"}],"termid":"MONDO:0035944","xrefs":{"Monarch":{"xref_id":"0035944"}}}


id: PBO:0084522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the ChAPs (Chs5p-Arf1p-binding proteins) family; part of the exomer complex with Chs5p to mediate export of specific cargo proteins, including Chs3p, from the Golgi to the plasma membrane; BCH2 has a paralog, CHS6, that arose from the whole genome duplication","termid":"PBO:0084522"}


id: PBO:0064499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II subunit C","termid":"PBO:0064499"}


id: PBO:0089147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L17","termid":"PBO:0089147"}


id: PR:O60056
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC56F2.05c gene.","definition_xrefs":["UniProtKB:O60056","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C56F2.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC56F2.05c","synonyms":[{"name":"Spom972h-SPBC56F2.05c","type":"exact"}],"termid":"PR:O60056"}


id: MONDO:0005283
data:
  {"annotated_genes":["SJAG_02955","SJAG_01152","SJAG_03588","SJAG_01422","SJAG_03557","SJAG_03592","SJAG_02063","SJAG_02878","SJAG_02947","SJAG_03795","SJAG_01630","SJAG_01634","SJAG_04681","SJAG_00643","SJAG_02295","SJAG_00531","SJAG_02712","SJAG_04334","SJAG_03827","SJAG_02286","SJAG_02362","SJAG_00495","SJAG_04003","SJAG_00845","SJAG_02194","SJAG_04529","SJAG_00742","SJAG_02623","SJAG_02163","SJAG_04296","SJAG_04637","SJAG_02150","SJAG_01298","SJAG_03258","SJAG_02885","SJAG_01356","SJAG_04225","SJAG_05342","SJAG_03081","SJAG_04495","SJAG_02946","SJAG_04745","SJAG_01998","SJAG_01897","SJAG_01756","SJAG_02889","SJAG_04497","SJAG_01526","SJAG_00737"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87040,87041],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012419"},{"annotations":[86356],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012099"},{"annotations":[86620],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0015026"},{"annotations":[86315],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957264"},{"annotations":[85577],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013644"},{"annotations":[86679],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010557"},{"annotations":[86190],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014372"},{"annotations":[84842],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014669"},{"annotations":[85848],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014872"},{"annotations":[86201,86202],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013802"},{"annotations":[86207],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013805"},{"annotations":[86902,86903],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100119"},{"annotations":[86662],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013454"},{"annotations":[85204],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012990"},{"annotations":[86715],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032794"},{"annotations":[85382],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012056"},{"annotations":[84860],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0060650"},{"annotations":[87009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009624"},{"annotations":[86231],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007918"},{"annotations":[86815],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009796"},{"annotations":[86080],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008379"},{"annotations":[85829],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010828"},{"annotations":[85969],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010806"},{"annotations":[85885],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011075"},{"annotations":[86933],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010723"},{"annotations":[86428],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012363"},{"annotations":[84823],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012477"},{"annotations":[86511],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013468"},{"annotations":[85222],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013516"},{"annotations":[85601,85602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013611"},{"annotations":[85586],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014256"},{"annotations":[86346,86350,86349,86347,86348,86351,86345,86352,86353],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014323"},{"annotations":[86033],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014400"},{"annotations":[86587],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0015013"},{"annotations":[86466,86467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044320"},{"annotations":[85995],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032604"},{"annotations":[85334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0031007"},{"annotations":[85857,85856],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010819"}]},"cv_name":"mondo","definition":"Any disease or disorder of the retina.","definition_xrefs":["NCIT:C62601"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"},{"relation_name":"is_a","term_name":"eye 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disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["EFO:0003839","HGNC:8002","ICD9:362.89","MEDGEN:11209","MESH:D012164","SCTID:29555009","NCIT:C26875","UMLS:C0035309","ICD9:362.9","DOID:5679"],"synonyms":[{"name":"eye disease of retina","type":"exact"},{"name":"retina eye 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id: GO:0044629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation by the classical pathway, in a different organism.","definition_xrefs":["PMID:20837040","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of complement activation, classical pathway in another organism (obsolete GO:0044629)","synonyms":[{"name":"negative regulation of complement activation, classical pathway in other organism","type":"exact"}],"termid":"GO:0044629"}


id: MONDO:1010328
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Retinoschisis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal degeneration, non-human animal","termid":"MONDO:1010326"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoschisis, non-human animal","secondary_identifiers":["OMIA:001185"],"termid":"MONDO:1010328","xrefs":{"Monarch":{"xref_id":"1010328"}}}


id: FYPO:0007494
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of beta-D-glucan measured in the spore wall is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cell wall beta-glucan level","termid":"FYPO:0004860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002946"}],"interesting_parent_ids":["FYPO:0002946","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased ascospore wall beta-glucan level","synonyms":[{"name":"increased ascospore wall beta-D-glucan level","type":"exact"},{"name":"increased ascospore wall beta-glucan accumulation","type":"related"},{"name":"increased ascospore wall beta-glucan level during mitotic cell cycle","type":"related"},{"name":"increased ascospore wall beta-glucan level during vegetative growth","type":"exact"},{"name":"increased spore wall beta-glucan level","type":"exact"}],"termid":"FYPO:0007494"}


id: PR:Q9USY8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC16H5.15 gene.","definition_xrefs":["UniProtKB:Q9USY8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16H5.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16H5.15","synonyms":[{"name":"Spom972h-SPBC16H5.15","type":"exact"}],"termid":"PR:Q9USY8"}


id: PBO:0071827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 22","termid":"PBO:0071827"}


id: MONDO:0100356
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A severe form of a genetic disease.","direct_ancestors":[{"relation_name":"is_a","term_name":"classic or non-classic genetic disease presentation","termid":"MONDO:0100355"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"classic presentation","termid":"MONDO:0100356","xrefs":{"Monarch":{"xref_id":"0100356"}}}


id: PBO:0027677
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_mitochondrial_translation","termid":"PBO:0027677"}


id: GO:0031218
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of (1->4)-beta-D-galactosidic linkages in arabinogalactans.","definition_xrefs":["GOC:mlg","EC:3.2.1.89"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosidase activity","termid":"GO:0015925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"arabinogalactan endo-1,4-beta-galactosidase activity","secondary_identifiers":["MetaCyc:3.2.1.89-RXN"],"synonyms":[{"name":"arabinogalactan 4-beta-D-galactanohydrolase activity","type":"related"},{"name":"arabinogalactanase activity","type":"exact"},{"name":"endo-1,4-beta-galactanase activity","type":"exact"},{"name":"galactanase activity","type":"exact"}],"termid":"GO:0031218"}


id: GO:0045439
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: isopenicillin N = penicillin N.","definition_xrefs":["EC:5.1.1.17","RHEA:20033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on amino acids and derivatives","termid":"GO:0016855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"isopenicillin-N epimerase activity","secondary_identifiers":["KEGG_REACTION:R04147","MetaCyc:5.1.1.17-RXN"],"synonyms":[{"name":"isopenicillin N epimerase activity","type":"exact"},{"name":"penicillin-N 5-amino-5-carboxypentanoyl-epimerase activity","type":"related"}],"termid":"GO:0045439"}


id: GO:1990127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of osmotic stress, and ends when the execution phase of apoptosis is triggered.","definition_xrefs":["GOC:krc","PMID:16571598","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway in response to osmotic stress","termid":"GO:0008627"},{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway by p53 class mediator","termid":"GO:0072332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator","termid":"GO:1990127"}


id: MONDO:0010794
data:
  {"annotated_genes":["SJAG_MIT15"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84774],"is_not":false,"summary":null,"term":"MONDO:0010794"}]},"cv_name":"mondo","definition":"A clinically heterogeneous progressive condition characterized by a combination of proximal neurogenic muscle weakness, sensory-motor neuropathy, ataxia, and pigmentary retinopathy.","definition_xrefs":["Orphanet:644"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"metabolic epilepsy","termid":"MONDO:0100033"},{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"},{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":1,"genes_by_uniquename":{"SJAG_MIT15":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005244","MONDO:0005066"],"is_obsolete":false,"name":"NARP syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:2089784682","MEDGEN:231285","MedDRA:10062940","GARD:262","MESH:C537396","UMLS:C1328349","OMIM:551500","DOID:0111273"],"synonyms":[{"name":"NARP","type":"related"},{"name":"NARP syndrome","type":"exact"},{"name":"neurogenic muscle weakness-ataxia-retinitis pigmentosa syndrome","type":"exact"},{"name":"neuropathy ataxia retinitis pigmentosa syndrome","type":"related"},{"name":"neuropathy, ataxia, and retinitis pigmentosa","type":"related"},{"name":"neuropathy-ataxia-retinitis pigmentosa syndrome","type":"exact"}],"termid":"MONDO:0010794","terms_by_termid":{"MONDO:0010794":null},"xrefs":{"Monarch":{"xref_id":"0010794"}}}


id: MONDO:0017781
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 12p deletion","termid":"MONDO:0022174"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"12p12.1 microdeletion syndrome","secondary_identifiers":["Orphanet:313884","GARD:17414","UMLS:C4755260","MEDGEN:1652598"],"synonyms":[{"name":"Del(12)(p12.1)","type":"exact"},{"name":"monosomy 12p12.1","type":"exact"}],"termid":"MONDO:0017781","xrefs":{"Monarch":{"xref_id":"0017781"}}}


id: PBO:0080384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS13B divergent transcript","termid":"PBO:0080384"}


id: GO:0046097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of deoxyuridine, 2-deoxyribosyluracil, one of the four major nucleosides of DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyuridine metabolic process","termid":"GO:0046096"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside biosynthetic process","termid":"GO:0046126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"deoxyuridine biosynthetic process","synonyms":[{"name":"deoxyuridine anabolism","type":"exact"},{"name":"deoxyuridine biosynthesis","type":"exact"},{"name":"deoxyuridine formation","type":"exact"},{"name":"deoxyuridine synthesis","type":"exact"}],"termid":"GO:0046097"}


id: FYPO:0004614
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule, is abnormal.","definition_xrefs":["PomBase:mah","GO:0046785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein-containing complex assembly","termid":"FYPO:0000447"},{"relation_name":"is_a","term_name":"abnormal microtubule dynamics during vegetative growth","termid":"FYPO:0000901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal microtubule polymerization during vegetative growth","synonyms":[{"name":"abnormal microtubule growth","type":"exact"},{"name":"abnormal microtubule polymerisation","type":"exact"},{"name":"abnormal microtubule polymerisation during vegetative growth","type":"exact"},{"name":"abnormal microtubule polymerization during mitotic cell cycle","type":"related"},{"name":"abnormal microtubule rescue","type":"related"}],"termid":"FYPO:0004614"}


id: MONDO:1011039
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any oculocutaneous albinism that occurs in dogs due to a mutation in the SLC45A2 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oculocutaneous albinism, non-human animal","termid":"MONDO:1012579"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oculocutaneous albinism, SLC45A2-related, dog","secondary_identifiers":["OMIA:001821-9615"],"synonyms":[{"name":"coat color albinism, oculocutaneous type IV, dog","type":"related"}],"termid":"MONDO:1011039","xrefs":{"Monarch":{"xref_id":"1011039"}}}


id: PR:O42842
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An adenine phosphoribosyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11776:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenine phosphoribosyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23A1.03","secondary_identifiers":["UniProtKB:O42842"],"synonyms":[{"name":"APRT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPAC23A1.03","type":"related"},{"name":"Spom972h-APRT","type":"exact"}],"termid":"PR:O42842"}


id: MOD:01602
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue, and an L-methionine residue to S-(L-lysyl)-L-methionine sulfilimine.","definition_xrefs":["PubMed:15951440","PubMed:12011424","PubMed:19729652","RESID:AA0501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked L-lysine residue","termid":"MOD:02051"},{"relation_name":"is_a","term_name":"crosslinked L-methionine residue","termid":"MOD:02052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(L-lysyl)-L-methionine sulfilimine","synonyms":[{"name":"(2S)-2-amino-6-([(E)-[(3S)-3-amino-3-carboxypropyl](methyl)-lambda(4)-sulfanylidene]amino)hexanoic acid","type":"exact"},{"name":"(E)-N6-([(3S)-3-amino-3-carboxypropyl](methyl)-lambda(4)-sulfanylidene)-L-lysine","type":"exact"},{"name":"S-(L-lysyl)-L-methionine sulfilimine","type":"exact"},{"name":"S-lysyl-methionine","type":"exact"}],"termid":"MOD:01602"}


id: GO:2000246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of Ftsz-dependent cytokinesis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokinesis","termid":"GO:0032467"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"is_a","term_name":"regulation of FtsZ-dependent cytokinesis","termid":"GO:2000244"},{"relation_name":"positively_regulates","term_name":"FtsZ-dependent cytokinesis","termid":"GO:0043093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of FtsZ-dependent cytokinesis","synonyms":[{"name":"positive regulation of prokaryote-type cytokinesis","type":"related"},{"name":"positive regulation of prokaryotic fission","type":"related"}],"termid":"GO:2000246"}


id: MONDO:0020141
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete infectious disease with dementia (obsolete MONDO:0020141)","secondary_identifiers":["Orphanet:98542"],"termid":"MONDO:0020141","xrefs":{"Monarch":{"xref_id":"0020141"}}}


id: PR:Q9P6J6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A periplasmic beta-glucosidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02337","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-glucosidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1683.04","secondary_identifiers":["UniProtKB:Q9P6J6"],"synonyms":[{"name":"Cellobiase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Gentiobiase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-bglX","type":"exact"},{"name":"beta-D-glucoside glucohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6J6"}


id: PBO:0050992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intraflagellar transport 88","termid":"PBO:0050992"}


id: PBO:0041500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 12 open reading frame 71B, pseudogene","termid":"PBO:0041500"}


id: PBO:0016105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine-dependent NAD(+) synthetase Qns1 (predicted)","termid":"PBO:0016105"}


id: MONDO:0010302
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypomelanosis of Ito (HI) is a multisystemic neurocutaneous condition with hypopigmented skin lesions along the Blaschko lines.","definition_xrefs":["Orphanet:435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"},{"relation_name":"is_a","term_name":"hypopigmentation of the skin","termid":"MONDO:0019290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005093"],"is_obsolete":false,"name":"Ito hypomelanosis","secondary_identifiers":["OMIM:300337","MEDGEN:5920","UMLS:C0022283","DOID:3156","GARD:2992","NORD:1274"],"synonyms":[{"name":"HMI","type":"related"},{"name":"Hypomelanosis of Ito","type":"exact"},{"name":"IPA","type":"related"},{"name":"Incontinentia pigmenti achromians","type":"related"},{"name":"Incontinentia pigmenti type 1","type":"exact"},{"name":"Incontinentia pigmenti type 1 (formerly)","type":"related"},{"name":"Incontinentia pigmenti, type I","type":"related"},{"name":"Incontinentia pigmenti, type I, formerly","type":"related"},{"name":"Ito","type":"related"},{"name":"Ito hypomelanosis","type":"exact"},{"name":"hi syndrome","type":"exact"},{"name":"hypomelanosis of Ito","type":"exact"},{"name":"pigmentary mosaicism, Ito type","type":"exact"}],"termid":"MONDO:0010302","xrefs":{"Monarch":{"xref_id":"0010302"}}}


id: GO:0075340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of growth or development of symbiont during interaction with host (obsolete GO:0075340)","synonyms":[{"name":"negative regulation of growth or development of symbiont during interaction with host","type":"exact"}],"termid":"GO:0075340"}


id: FYPO:0008016
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of phenylalanine into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mlr","PMID:11069779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased amino acid import during vegetative growth","termid":"FYPO:0001360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased phenylalanine import during vegetative growth","synonyms":[{"name":"decreased L-phenylalanine import across plasma membrane","type":"exact"},{"name":"decreased phenylalanine import across plasma membrane","type":"exact"}],"termid":"FYPO:0008016"}


id: PR:O13756
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar protein sorting-associated protein 8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01486","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A2.06c","secondary_identifiers":["UniProtKB:O13756"],"synonyms":[{"name":"Spom972h-VPS8","type":"exact"},{"name":"vacuolar protein-targeting protein 8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13756"}


id: FYPO:0007057
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the movement of substances via vesicles from recycling endosomes to the Golgi is abnormal.","definition_xrefs":["PomBase:mah","GO:0071955"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vesicle-mediated transport during vegetative growth","termid":"FYPO:0000213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal recycling endosome to Golgi transport","synonyms":[{"name":"abnormal recycling endosome to Golgi transport during mitotic cell cycle","type":"related"},{"name":"abnormal recycling endosome to Golgi transport during vegetative growth","type":"exact"}],"termid":"FYPO:0007057"}


id: GO:0010098
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the suspensor over time, from its formation to the mature structure. The suspensor is the extension at the base of the embryo that anchors the embryo in the embryo sac and pushes it into the endosperm.","definition_xrefs":["GOC:tb","ISBN:0471245208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"suspensor development","termid":"GO:0010098"}


id: GO:0018109
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The phosphorylation of peptidyl-arginine to form omega-N-phospho-L-arginine.","definition_xrefs":["RESID:AA0222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein phosphorylation","termid":"GO:0006468"},{"relation_name":"is_a","term_name":"peptidyl-arginine modification","termid":"GO:0018195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-arginine phosphorylation","termid":"GO:0018109"}


id: PBO:0034795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ChAPs family protein bch1","termid":"PBO:0034795"}


id: MONDO:0004353
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-invasive, papillary epithelial neoplasm that arises from the epithelium of the extrahepatic bile ducts.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile duct papillary neoplasm","termid":"MONDO:0003455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"extrahepatic biliary papillomatosis","secondary_identifiers":["DOID:7752","MEDGEN:232484","NCIT:C7124","UMLS:C1333511"],"synonyms":[{"name":"extrahepatic bile duct papillary neoplasm","type":"exact"},{"name":"extrahepatic bile duct papillomatosis","type":"exact"},{"name":"extrahepatic biliary papillomatosis","type":"exact"}],"termid":"MONDO:0004353","xrefs":{"Monarch":{"xref_id":"0004353"}}}


id: FYPO:0006134
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 2-palmitoleoylglycerophosphoinositol measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah","PMID:28667014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased phospholipid level","termid":"FYPO:0001288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular 2-palmitoleoylglycerophosphoinositol level","synonyms":[{"name":"increased 2-palmitoleoylglycerophosphoinositol accumulation","type":"related"},{"name":"increased cellular 2-palmitoleoyl-sn-glycero-3-phospho-D-myo-inositol level during vegetative growth","type":"exact"},{"name":"increased cellular 2-palmitoleoylglycerophosphoinositol level during mitotic cell cycle","type":"related"},{"name":"increased cellular 2-palmitoleoylglycerophosphoinositol level during vegetative growth","type":"exact"}],"termid":"FYPO:0006134"}


id: PBO:0086349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid and sterol composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1; null mutation is complemented by human Parkinson disease-related ATP13A1","termid":"PBO:0086349"}


id: PBO:0061971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily AJ member 1","termid":"PBO:0061971"}


id: FYPO:0004620
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which spindle disassembly is abnormal. Spindle disassembly is the controlled breakdown of the spindle.","definition_xrefs":["PomBase:mah","GO:0051230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization","termid":"FYPO:0000054"},{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0005447","FYPO:0000054"],"is_obsolete":false,"name":"abnormal spindle disassembly","termid":"FYPO:0004620"}


id: FYECO:0000087
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which proline was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ pro","synonyms":[{"name":"proline added","type":"exact"}],"termid":"FYECO:0000087"}


id: SO:0001811
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A post-translationally modified region in which residues of the protein are modified by phosphorylation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post_translationally_modified_region","termid":"SO:0001089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"phosphorylation_site","synonyms":[{"name":"phosphorylation site","type":"exact"}],"termid":"SO:0001811"}


id: PBO:0027342
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_DNA_primase_activity","termid":"PBO:0027342"}


id: GO:0008493
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of tetracycline from one side of a membrane to the other. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"},{"relation_name":"is_a","term_name":"alcohol transmembrane transporter activity","termid":"GO:0015665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"tetracycline transmembrane transporter activity","synonyms":[{"name":"tetracyclin transporter activity","type":"exact"},{"name":"tetracycline transporter activity","type":"related"}],"termid":"GO:0008493"}


id: MONDO:0006099
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete B-cell prolymphocytic leukemia (obsolete MONDO:0006099)","termid":"MONDO:0006099","xrefs":{"Monarch":{"xref_id":"0006099"}}}


id: MONDO:0014711
data:
  {"annotated_genes":["SJAG_00103"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85759],"is_not":false,"summary":null,"term":"MONDO:0014711"}]},"cv_name":"mondo","definition":"Any Charcot-Marie-Tooth disease type 2 in which the cause of the disease is a mutation in the HARS gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00103":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"autosomal dominant Charcot-Marie-Tooth disease type 2W","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:17891","MEDGEN:1798909","OMIM:616625","Orphanet:488333","DOID:0110162","UMLS:C5567486"],"synonyms":[{"name":"CMT2W","type":"exact"},{"name":"Charcot-Marie-Tooth disease type 2 caused by mutation in HARS","type":"exact"},{"name":"Charcot-Marie-Tooth disease, axonal type 2W","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, autosomal dominant, type 2W","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2W","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2w","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy type 2W","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, type 2W","type":"related"},{"name":"HARS Charcot-Marie-Tooth disease type 2","type":"exact"},{"name":"autosomal dominant Charcot-Marie-Tooth disease type 2 due to HARS mutation","type":"exact"},{"name":"autosomal dominant axonal Charcot-Marie-Tooth disease type 2W","type":"exact"}],"termid":"MONDO:0014711","terms_by_termid":{"MONDO:0014711":null},"xrefs":{"Monarch":{"xref_id":"0014711"}}}


id: GO:0038041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Inhibition of one protomer of a G protein-coupled receptor (GPCR) heterodimer by the associated subunit. For example, agonist activation of one cytokine receptor can prevent activation of its associated cytokine receptor subunit.","definition_xrefs":["GOC:al","GOC:bf","PMID:15979374"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of G protein-coupled receptor signaling pathway","termid":"GO:0008277"},{"relation_name":"is_a","term_name":"negative regulation of signaling receptor activity","termid":"GO:2000272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"cross-receptor inhibition within G protein-coupled receptor heterodimer","synonyms":[{"name":"cross-receptor inhibition within G-protein coupled receptor heterodimer","type":"exact"}],"termid":"GO:0038041"}


id: GO:0003191
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of the coronary sinus valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart valve formation","termid":"GO:0003188"},{"relation_name":"part_of","term_name":"coronary sinus valve morphogenesis","termid":"GO:0003182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"coronary sinus valve formation","termid":"GO:0003191"}


id: PBO:0072212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S18 pseudogene 11","termid":"PBO:0072212"}


id: PBO:0054044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1385","termid":"PBO:0054044"}


id: GO:0047122
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: A + H2O + quinaldate = AH(2) + kynurenate.","definition_xrefs":["RHEA:16697","EC:1.3.99.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"quinaldate 4-oxidoreductase activity","secondary_identifiers":["KEGG_REACTION:R03687","MetaCyc:1.3.99.18-RXN"],"synonyms":[{"name":"quinaldic acid 4-oxidoreductase activity","type":"related"},{"name":"quinoline-2-carboxylate:acceptor 4-oxidoreductase (hydroxylating)","type":"related"}],"termid":"GO:0047122"}


id: PBO:0089295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha mannosidase Mnl1","termid":"PBO:0089295"}


id: PATO:0000078
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"temporal distribution quality","termid":"PATO:0002323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhythm quality","termid":"PATO:0000078"}


id: GO:0034420
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of an acetyl group to one or more amino acids in a protein, occurring before the protein has been completely translated and released from the ribosome.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete co-translational protein acetylation (obsolete GO:0034420)","synonyms":[{"name":"co-translational protein amino acid acetylation","type":"exact"},{"name":"cotranslational protein amino acid acetylation","type":"exact"}],"termid":"GO:0034420"}


id: MONDO:1012646
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant form of nephritis that occurs in dogs.","definition_xrefs":["MONDO:patterns/autosomal_dominant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephritis, dog","termid":"MONDO:1011045"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autosomal dominant nephritis, dog","secondary_identifiers":["OMIA:001114-9615"],"synonyms":[{"name":"Alport syndrome, dog","type":"related"},{"name":"nephritis, autosomal dominant","type":"exact"}],"termid":"MONDO:1012646","xrefs":{"Monarch":{"xref_id":"1012646"}}}


id: GO:0001680
data:
  {"annotated_genes":["SJAG_01704","SJAG_02288"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69965,74626],"is_not":false,"summary":null,"term":"GO:0001680"}]},"cv_name":"biological_process","definition":"Post-transcriptional addition of the terminal 3' CCA sequence to a tRNA which does not encode this sequence within the primary transcript. CCA addition proceeds by the sequential addition of CTP, CTP, and then ATP to the 3' end of the tRNA, yielding a diphosphate with each nucleotide addition.","definition_xrefs":["PMID:2247609","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA 3'-end processing","termid":"GO:0042780"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01704":null,"SJAG_02288":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006399","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"tRNA 3'-terminal CCA addition","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0001680","terms_by_termid":{"GO:0001680":null}}


id: PBO:0031360
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_amphotericin_B","termid":"PBO:0031360"}


id: PBO:0061100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroligin 4 X-linked","termid":"PBO:0061100"}


id: MONDO:0012433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Senior-Loken syndrome in which the cause of the disease is a mutation in the CEP290 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Senior-Loken syndrome","termid":"MONDO:0017842"},{"relation_name":"is_a","term_name":"CEP290-related ciliopathy","termid":"MONDO:0100451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005240"],"is_obsolete":false,"name":"Senior-Loken syndrome 6","secondary_identifiers":["MEDGEN:387907","GARD:15476","UMLS:C1857779","MESH:C565708","OMIM:610189"],"synonyms":[{"name":"CEP290 Senior-Loken syndrome","type":"exact"},{"name":"SENIOR-Loken syndrome 6","type":"related"},{"name":"SLSN6","type":"related"},{"name":"Senior-Loken syndrome 6","type":"exact"},{"name":"Senior-Loken syndrome caused by mutation in CEP290","type":"exact"},{"name":"Senior-Loken syndrome type 6","type":"exact"}],"termid":"MONDO:0012433","xrefs":{"Monarch":{"xref_id":"0012433"}}}


id: GO:0002732
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of dendritic cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte mediated immunity","termid":"GO:0002705"},{"relation_name":"is_a","term_name":"positive regulation of cytokine production involved in immune response","termid":"GO:0002720"},{"relation_name":"is_a","term_name":"regulation of dendritic cell cytokine production","termid":"GO:0002730"},{"relation_name":"positively_regulates","term_name":"dendritic cell cytokine production","termid":"GO:0002371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of dendritic cell cytokine production","synonyms":[{"name":"activation of dendritic cell cytokine production","type":"narrow"},{"name":"stimulation of dendritic cell cytokine production","type":"narrow"},{"name":"up regulation of dendritic cell cytokine production","type":"exact"},{"name":"up-regulation of dendritic cell cytokine production","type":"exact"},{"name":"upregulation of dendritic cell cytokine production","type":"exact"}],"termid":"GO:0002732"}


id: PBO:0089817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane peptidase complex catalytic subunit 2","termid":"PBO:0089817"}


id: PBO:0069771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1054, pseudogene","termid":"PBO:0069771"}


id: PR:O36024
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fta1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O36024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein fta1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.12","synonyms":[{"name":"Spom972h-fta1","type":"exact"},{"name":"sim4 complex subunit fta1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"sim4-mal2-associated protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O36024"}


id: PBO:0064528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase III subunit GL","termid":"PBO:0064528"}


id: PBO:0000426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA Z5","termid":"PBO:0000426"}


id: PBO:0071247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 88","termid":"PBO:0071247"}


