# terms

id: MONDO:1011511
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Glaucoma that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glaucoma, non-human animal","termid":"MONDO:1011457"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glaucoma, domestic cat","secondary_identifiers":["OMIA:000411-9685"],"termid":"MONDO:1011511","xrefs":{"Monarch":{"xref_id":"1011511"}}}


id: MONDO:0957583
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with dysmorphic facies and behavioral abnormalities","secondary_identifiers":["DOID:0070513","OMIM:620489","MEDGEN:1852093","UMLS:C5882684"],"termid":"MONDO:0957583","xrefs":{"Monarch":{"xref_id":"0957583"}}}


id: PBO:0068477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 56, pseudogene","termid":"PBO:0068477"}


id: GO:0043769
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex composed of four polypeptides, a telomere-protecting terminal protein (Tpg), a telomere-associated protein (Tap), DNA polymerase (PolA) and topoisomerase I (TopA), that functions in the replication of the telomeric regions of linear chromosomes, plasmids and circular replicons of some bacterial species.","definition_xrefs":["PMID:15353591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomere cap complex","termid":"GO:0000782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005694","GO:0005575"],"is_obsolete":false,"name":"Tpg-containing telomere binding complex","synonyms":[{"name":"telomere complex","type":"broad"}],"termid":"GO:0043769"}


id: GO:0005756
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the mitochondrial membrane-associated F0 proteins; rotates within the catalytic core during catalysis.","definition_xrefs":["GOC:mtg_sensu","PMID:10838056"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial proton-transporting ATP synthase, central stalk (obsolete GO:0005756)","termid":"GO:0005756"}


id: GO:1904197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of granulosa cell proliferation.","definition_xrefs":["PMID:22383759","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of epithelial cell proliferation","termid":"GO:0050679"},{"relation_name":"is_a","term_name":"regulation of granulosa cell proliferation","termid":"GO:1904195"},{"relation_name":"positively_regulates","term_name":"granulosa cell proliferation","termid":"GO:1990739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of granulosa cell proliferation","synonyms":[{"name":"activation of granulosa cell proliferation","type":"narrow"},{"name":"up regulation of granulosa cell proliferation","type":"exact"},{"name":"up-regulation of granulosa cell proliferation","type":"exact"},{"name":"upregulation of granulosa cell proliferation","type":"exact"}],"termid":"GO:1904197"}


id: MONDO:0044245
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete nailbeds, pigmentation of (obsolete MONDO:0044245)","secondary_identifiers":["OMIM:161100"],"synonyms":[{"name":"NAILBEDS, pigmentation OF","type":"related"}],"termid":"MONDO:0044245","xrefs":{"Monarch":{"xref_id":"0044245"}}}


id: MONDO:0009132
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysautonomia-like disorder","secondary_identifiers":["MEDGEN:347385","MESH:C535728","OMIM:224000","UMLS:C1857153"],"synonyms":[{"name":"dysautonomia like disorder","type":"related"},{"name":"dysautonomia-like disorder","type":"exact"}],"termid":"MONDO:0009132","xrefs":{"Monarch":{"xref_id":"0009132"}}}


id: PBO:0060587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 26","termid":"PBO:0060587"}


id: MONDO:0011603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Nonaka distal myopathy (described in Japan) and the quadriceps-sparing autosomal recessive inclusion body myopathy type 2 (IBM2; independently described in Iranian Jews and later in other Jewish and non-Jewish populations) constitute the same pathological entity, distinguished by the sparing of quadriceps.","definition_xrefs":["Orphanet:602"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inclusion body myositis","termid":"MONDO:0007827"},{"relation_name":"is_a","term_name":"congenital hematological disorder","termid":"MONDO:0009332"},{"relation_name":"is_a","term_name":"hereditary inclusion-body myopathy","termid":"MONDO:0016112"},{"relation_name":"is_a","term_name":"disorder of multiple glycosylation","termid":"MONDO:0017749"},{"relation_name":"is_a","term_name":"syndromic constitutional thrombocytopenia","termid":"MONDO:0018795"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005066","MONDO:0024322","MONDO:0005336"],"is_obsolete":false,"name":"GNE myopathy","secondary_identifiers":["UMLS:C1853926","NORD:2011","DOID:0080718","MEDGEN:381298","SCTID:702382000","OMIM:605820","NANDO:1200218","GARD:9493"],"synonyms":[{"name":"DMRV","type":"exact"},{"name":"HIBM2","type":"exact"},{"name":"IBM2","type":"exact"},{"name":"NM","type":"related"},{"name":"Nonaka distal myopathy","type":"related"},{"name":"Nonaka myopathy","type":"exact"},{"name":"QSM","type":"related"},{"name":"distal myopathy with rimmed vacuoles","type":"exact"},{"name":"distal myopathy, Nonaka type","type":"exact"},{"name":"hereditary inclusion body myopathy type 2","type":"exact"},{"name":"inclusion body myopathy 2, autosomal recessive","type":"related"},{"name":"inclusion body myopathy 2, autosomal recessive, formerly","type":"related"},{"name":"inclusion body myopathy autosomal recessive","type":"exact"},{"name":"inclusion body myopathy type 2","type":"exact"},{"name":"inclusion body myopathy, autosomal recessive","type":"related"},{"name":"inclusion body myopathy, hereditary, autosomal recessive","type":"related"},{"name":"inclusion body myopathy, quadriceps-sparing","type":"related"},{"name":"myopathy, distal, with or without rimmed vacuoles","type":"related"},{"name":"myopathy, distal, with rimmed vacuoles","type":"related"},{"name":"quadriceps sparing myopathy","type":"related"},{"name":"quadriceps-sparing myopathy","type":"exact"},{"name":"rimmed vacuole myopathy","type":"related"}],"termid":"MONDO:0011603","xrefs":{"Monarch":{"xref_id":"0011603"}}}


id: PR:P87173
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U6 snRNA-associated Sm-like protein LSm1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR15588:SF5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U6 snRNA-associated Sm-like protein LSm1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3D6.08c","secondary_identifiers":["UniProtKB:P87173"],"synonyms":[{"name":"SPBC3D6.08c","type":"related"},{"name":"Spom972h-LSM1","type":"exact"}],"termid":"PR:P87173"}


id: PBO:0067968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 270","termid":"PBO:0067968"}


id: GO:0048469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cellular developmental process, independent of morphogenetic (shape) change, that is required for a specific cell to attain its fully functional state.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular developmental process","termid":"GO:0048869"},{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"cell development","termid":"GO:0048468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell maturation","synonyms":[{"name":"functional differentiation","type":"related"}],"termid":"GO:0048469"}


id: PBO:0061578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NTM antisense RNA 1","termid":"PBO:0061578"}


id: PR:O43003
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mmf1 gene.","definition_xrefs":["UniProtKB:O43003","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein mmf1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G2.04c","synonyms":[{"name":"Spom972h-mmf1","type":"exact"},{"name":"isoleucine biosynthesis and maintenance of intact mitochondria 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"maintenance of mitochondrial function 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O43003"}


id: GO:0000284
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:elh"],"gene_count":0,"genotype_count":0,"name":"obsolete shmoo orientation (obsolete GO:0000284)","synonyms":[{"name":"shmoo orientation","type":"exact"}],"termid":"GO:0000284"}


id: FYPO:0000776
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein modification during vegetative growth","termid":"FYPO:0000549"},{"relation_name":"is_a","term_name":"normal protein phosphorylation","termid":"FYPO:0004422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal protein phosphorylation during vegetative growth","synonyms":[{"name":"normal protein phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000776"}


id: PBO:0031828
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-vacuoles_absent","termid":"PBO:0031828"}


id: MONDO:0013991
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital leptin deficiency is a form of monogenic obesity characterized by severe early-onset obesity and marked hyperphagia.","definition_xrefs":["Orphanet:66628"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hypogonadotropic hypogonadism","termid":"MONDO:0015770"},{"relation_name":"is_a","term_name":"inherited obesity","termid":"MONDO:0019182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"obesity due to congenital leptin deficiency","secondary_identifiers":["GARD:13015","DOID:0111334","OMIM:614962","icd11.foundation:591009309","NORD:110641","MEDGEN:767138","UMLS:C3554224"],"synonyms":[{"name":"Congenital Leptin Deficiency","type":"exact"},{"name":"LEPD","type":"related"},{"name":"leptin deficiency or dysfunction","type":"related"},{"name":"obesity, morbid, due to leptin deficiency","type":"exact"},{"name":"obesity, morbid, nonsyndromic 1","type":"related"}],"termid":"MONDO:0013991","xrefs":{"Monarch":{"xref_id":"0013991"}}}


id: MONDO:0003647
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"tympanic membrane disorder","termid":"MONDO:0003648"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atrophic flaccid tympanic membrane","secondary_identifiers":["UMLS:C0155470","ICD9:384.81","DOID:5781","MEDGEN:509982","SCTID:38645004"],"termid":"MONDO:0003647","xrefs":{"Monarch":{"xref_id":"0003647"}}}


id: PR:O74535
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppn1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74535"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleavage and polyadenylation factor complex subunit C74.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC74.02c","synonyms":[{"name":"Spom972h-ppn1","type":"exact"}],"termid":"PR:O74535"}


id: MONDO:0020064
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pulmonary valve agenesis is a rare congenital heart malformation characterized by a total or partial absence of the pulmonary valve leaflets associated with stenosis of the pulmonary artery orifice and aneurysmal dilatation of the pulmonary arteries. It usually occurs in association with additional cardiovascular malformations such as teralogy of fallot or ventricular septal defect, or can occur as part of a syndrome (e.g. 22q11.2 deletion syndrome). Clinical features depend on the presence of associated cardiac malformations and include pulmonary insufficiency, bronchial obstruction (secondary to compression by aneurysmally dilated pulmonary arteries), pulmonary stenosis, cyanosis, and cardiac failure.3424","definition_xrefs":["Orphanet:982"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conotruncal heart malformations","termid":"MONDO:0016581"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pulmonary valve agenesis","secondary_identifiers":["MEDGEN:576671","NANDO:2100095","NANDO:2200280","GARD:4597","SCTID:6996004","UMLS:C0344983"],"synonyms":[{"name":"PVA","type":"exact"},{"name":"absent pulmonary valve syndrome","type":"exact"},{"name":"congenital absence of the pulmonary valve","type":"exact"},{"name":"pulmonary valves agenesis","type":"related"}],"termid":"MONDO:0020064","xrefs":{"Monarch":{"xref_id":"0020064"}}}


id: SO:0002224
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region that codes for a 2A self-cleaving polypeptide region, which is a region that can result in a break in the peptide sequence at its terminal G-P junction.","definition_xrefs":["PMID:22301656","PMID:28526819"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_region","termid":"SO:0000839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"2A_self_cleaving_peptide_region","synonyms":[{"name":"2A polypeptide region","type":"related"},{"name":"2A self-cleaving polypeptide region","type":"related"}],"termid":"SO:0002224"}


id: PBO:0065203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA processing factor 38A","termid":"PBO:0065203"}


id: GO:0018767
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate + H2O = cis-2-hydroxypenta-2,4-dienoate + isobutyrate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase activity (obsolete GO:0018767)","termid":"GO:0018767"}


id: PR:Q9UT05
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tripeptidyl-peptidase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02216","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripeptidyl-peptidase 2 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP8A3.12c","secondary_identifiers":["UniProtKB:Q9UT05"],"synonyms":[{"name":"Spom972h-TPP2","type":"exact"},{"name":"TPP-2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"multicorn protease (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT05"}


id: FYPO:0005517
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing 6-azauracil.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0002058","FYPO:0000257","FYPO:0000139","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on 6-azauracil","synonyms":[{"name":"normal cell population growth in presence of 6-azauracil","type":"exact"},{"name":"normal cell population growth on 6-azauracil","type":"exact"},{"name":"normal cellular response to 6-azauracil","type":"related"},{"name":"normal vegetative cell population growth on 6-azauracil","type":"exact"}],"termid":"FYPO:0005517"}


id: PBO:0069703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 983, pseudogene","termid":"PBO:0069703"}


id: PBO:0068976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 220, pseudogene","termid":"PBO:0068976"}


id: PBO:0011127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, adhesion molecule (predicted), DUF1773 family protein 1","termid":"PBO:0011127"}


id: GO:0102399
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: S-adenosyl-L-methionine + dTDP-3-N-methylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose = S-adenosyl-L-homocysteine + dTDP-3-N,N-dimethylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete dTDP-3-N-methylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose N-methyltransferase activity (obsolete GO:0102399)","termid":"GO:0102399"}


id: PBO:0109607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A15","termid":"PBO:0109607"}


id: PBO:0091822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Arf3/6 docking factor","termid":"PBO:0091822"}


id: PBO:0058002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3926-1","termid":"PBO:0058002"}


id: PBO:0075462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 13","termid":"PBO:0075462"}


id: GO:0005085
data:
  {"annotated_genes":["SJAG_00514","SJAG_04010","SJAG_02471","SJAG_03678","SJAG_03002","SJAG_04615","SJAG_02486","SJAG_04491","SJAG_00216","SJAG_02529","SJAG_02248","SJAG_02004","SJAG_05210","SJAG_04464","SJAG_02160","SJAG_04837","SJAG_02645","SJAG_01415","SJAG_00064","SJAG_02368","SJAG_01309","SJAG_02819","SJAG_00143","SJAG_03246","SJAG_00858","SJAG_02307","SJAG_01699","SJAG_03488","SJAG_01576","SJAG_03705","SJAG_00807","SJAG_04982","SJAG_02493","SJAG_05184","SJAG_01367","SJAG_01030","SJAG_03600","SJAG_03142","SJAG_01659","SJAG_03704","SJAG_03581","SJAG_04771","SJAG_01025","SJAG_06588","SJAG_02027","SJAG_02833","SJAG_03089","SJAG_04653"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[56753,56830,57232,57345,57530,57902,60952,61898,63058,64350,64997,66232,68100,68923,69216,69513,71070,71556,71615,71916,72100,73594,73617,73891,74422,75127,77219,77939,77971,78334,78676,79141,80166,90760,90952,91876,92530,93806,94082,97085,97500,97748,98895,106213,106796,108113,115341,116311],"is_not":false,"summary":null,"term":"GO:0005085"}]},"cv_name":"molecular_function","definition":"Stimulates the exchange of GDP to GTP on a signaling GTPase, changing its conformation to its active form. Guanine nucleotide exchange factors (GEFs) act by stimulating the release of guanosine diphosphate (GDP) to allow binding of guanosine triphosphate (GTP), which is more abundant in the cell under normal cellular physiological conditions.","definition_xrefs":["PMID:23303910","GOC:kd","GOC:mah","PMID:27218782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTPase regulator 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id: PBO:0054035
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1366","termid":"PBO:0054035"}


id: PBO:0044965
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrogenase/reductase 11","termid":"PBO:0044965"}


id: GO:0018237
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id: PBO:0087509
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id: MONDO:0024553
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id: SO:0001508
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id: PBO:0017566
data:
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id: GO:0005768
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id: PBO:0079127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"teashirt zinc finger homeobox 3","termid":"PBO:0079127"}


id: RO:0002587
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  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"results_in_formation_of","termid":"_global:results_in_formation_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_synthesis_of","termid":"RO:0002587"}


id: GO:0002285
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in morphology and behavior of a lymphocyte resulting from exposure to a specific antigen, mitogen, cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte activation involved in immune response","termid":"GO:0002366"},{"relation_name":"is_a","term_name":"lymphocyte activation","termid":"GO:0046649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphocyte activation involved in immune response","synonyms":[{"name":"lymphocyte activation during immune response","type":"related"}],"termid":"GO:0002285"}


id: GO:1905253
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any negative regulation of epidermal growth factor receptor signaling pathway that is involved in heart process.","definition_xrefs":["GO_REF:0000060","GOC:BHF","GOC:bc","GOC:BHF_miRNA","PMID:23069713","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of epidermal growth factor receptor signaling pathway involved in heart process (obsolete GO:1905253)","synonyms":[{"name":"down regulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"down regulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"exact"},{"name":"down-regulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"down-regulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"exact"},{"name":"downregulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"downregulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"exact"},{"name":"inhibition of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of epidermal growth factor receptor signaling pathway involved in heart process","type":"narrow"},{"name":"negative regulation of EGF receptor signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of EGF receptor signaling pathway involved in heart process","type":"exact"},{"name":"negative regulation of EGF receptor signalling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of EGF receptor signalling pathway involved in heart process","type":"exact"},{"name":"negative regulation of EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of EGFR signaling pathway involved in heart process","type":"exact"},{"name":"negative regulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"}],"termid":"GO:1905253"}


id: PBO:0079311
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 5","termid":"PBO:0079311"}


id: MONDO:0001800
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"scleral disorder","termid":"MONDO:0001269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"equatorial staphyloma","secondary_identifiers":["DOID:13788","ICD9:379.13","SCTID:82146006","UMLS:C0155361","MEDGEN:509935","icd11.foundation:120412682"],"termid":"MONDO:0001800","xrefs":{"Monarch":{"xref_id":"0001800"}}}


id: MONDO:1011159
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteoarthritis that occurs in koala.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteoarthritis, non-human animal","termid":"MONDO:1010297"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoarthritis, koala","secondary_identifiers":["OMIA:000747-38626"],"termid":"MONDO:1011159","xrefs":{"Monarch":{"xref_id":"1011159"}}}


id: MONDO:0010290
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"multinodular goiter","termid":"MONDO:0000334"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"goiter, multinodular 2","secondary_identifiers":["MESH:C564546","MEDGEN:337370","OMIM:300273","UMLS:C1846033"],"synonyms":[{"name":"MNG2","type":"exact"},{"name":"goiter, multinodular 2","type":"exact"},{"name":"goiter, multinodular, 2, X-linked dominant","type":"exact"}],"termid":"MONDO:0010290","xrefs":{"Monarch":{"xref_id":"0010290"}}}


id: PBO:0035976
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_NEDD8-specific_protease_activity","termid":"PBO:0035976"}


id: GO:0071085
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface protein CD9.","definition_xrefs":["PMID:10429193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"alphaIIb-beta3 integrin-CD9 complex","synonyms":[{"name":"ITGA2b-ITGB3-CD9 complex","type":"narrow"}],"termid":"GO:0071085"}


id: PBO:0058847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8076","termid":"PBO:0058847"}


id: MONDO:0017799
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare syndrome affecting females. It is characterized by pleural effusion, ascites and non-malignant ovarian neoplasm. This syndrome usually follows a benign course. Prognosis is favorable following surgical resection of the ovarian mass.","definition_xrefs":["NCIT:C3223"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovarian benign neoplasm","termid":"MONDO:0000646"},{"relation_name":"is_a","term_name":"neoplastic syndrome","termid":"MONDO:0021058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meigs syndrome","secondary_identifiers":["MEDGEN:6287","icd11.foundation:1050919535","ICD9:629.89","MedDRA:10027139","MESH:D008539","UMLS:C0025184","SCTID:63402005","Orphanet:314451","GARD:21372"],"synonyms":[{"name":"Demons-Meigs syndrome","type":"exact"},{"name":"Meigs' syndrome","type":"exact"}],"termid":"MONDO:0017799","xrefs":{"Monarch":{"xref_id":"0017799"}}}


id: PBO:0090524
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNF2 family DNA-dependent ATPase (human ERCC6) Rhp26","termid":"PBO:0090524"}


id: MONDO:0000451
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A multiple sclerosis that is characterized by steady worsening of neurologic functioning, without any distinct relapses or periods of remission. The rate of progression may vary over time, with occasional plateaus or temporary improvements, but the progression is continuous.","definition_xrefs":["DOID:0050784"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic progressive multiple sclerosis","termid":"MONDO:0005284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005046"],"is_obsolete":false,"name":"primary progressive multiple sclerosis","secondary_identifiers":["UMLS:C0751964","EFO:0008520","NANDO:2201320","MEDGEN:155968","icd11.foundation:1020720762","SCTID:428700003","NANDO:1200025"],"synonyms":[{"name":"PPMS","type":"exact"},{"name":"primary-progressive MS","type":"exact"}],"termid":"MONDO:0000451","xrefs":{"Monarch":{"xref_id":"0000451"}}}


id: PBO:0004501
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT II complex subunit Vps25","termid":"PBO:0004501"}


id: PBO:0085760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase involved in the cell cycle checkpoint into anaphase; in complex with Mad1p and Bub3p, prevents progression into anaphase in presence of spindle damage; Cdc28p-mediated phosphorylation at Bub1p-T566 is important for degradation in anaphase and adaptation of checkpoint to prolonged mitotic arrest; associates with centromere DNA via Skp1p; involved in Sgo1p relocalization in response to sister kinetochore tension; paralog MAD3 arose from whole genome duplication","termid":"PBO:0085760"}


id: GO:0100018
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates glucose import.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of glucose import by transcription from RNA polymerase II promoter (obsolete GO:0100018)","termid":"GO:0100018"}


id: PBO:0116805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEPDC1 antisense RNA 2","termid":"PBO:0116805"}


id: PBO:0086606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; functions together with HAM1 to mediate resistance to 5-FU; specifically reduces the incorporation of 5-FU into RNA, without affecting uptake or incorporation of uracil into RNA; proposed to be involved in the metabolism of purine and pyrimidine base analogues; deletion mutants are sensitive to HAP and AHA","termid":"PBO:0086606"}


id: GO:0019727
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (R)-mevalonate + NAD+ = H+ + mevaldate + NADH.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete mevaldate reductase (NADH) activity (obsolete GO:0019727)","termid":"GO:0019727"}


id: GO:0005838
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id: MONDO:0013429
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the PDE6B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736","MONDO:0005328"],"is_obsolete":false,"name":"retinitis pigmentosa 40","secondary_identifiers":["UMLS:C3151107","GARD:15709","MEDGEN:462457","ICD10CM:H35.5","OMIM:613801","DOID:0110375"],"synonyms":[{"name":"PDE6B retinitis pigmentosa","type":"exact"},{"name":"RP40","type":"exact"},{"name":"retinitis pigmentosa 40","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in PDE6B","type":"exact"},{"name":"retinitis pigmentosa type 40","type":"exact"},{"name":"retinitis pigmentosa-40","type":"exact"}],"termid":"MONDO:0013429","xrefs":{"Monarch":{"xref_id":"0013429"}}}


id: MONDO:0014217
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hereditary hemorrhagic telangiectasia in which the cause of the disease is a mutation in the GDF2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary hemorrhagic telangiectasia","termid":"MONDO:0019180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"telangiectasia, hereditary hemorrhagic, type 5","secondary_identifiers":["GARD:15978","MEDGEN:816040","OMIM:615506","UMLS:C3809710"],"synonyms":[{"name":"GDF2 hereditary hemorrhagic telangiectasia","type":"exact"},{"name":"GDF2 related HHT-like syndrome","type":"exact"},{"name":"HHT5","type":"related"},{"name":"hereditary hemorrhagic telangiectasia caused by mutation in GDF2","type":"exact"},{"name":"telangiectasia, hereditary hemorrhagic, type 5","type":"exact"}],"termid":"MONDO:0014217","xrefs":{"Monarch":{"xref_id":"0014217"}}}


id: PBO:0056454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionyl-tRNA synthetase 2, mitochondrial","termid":"PBO:0056454"}


id: PBO:0068663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 44, pseudogene","termid":"PBO:0068663"}


id: MONDO:0035238
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare subtype of pyoderma gangrenosum disease characterized by a solitary, erythematous, ulcerated plaque, which lacks the violaceous border typically present in classic pyoderma gangrenosum, usually affecting individuals who are otherwise healthy. Histologically, the lesion presents a central layer containing neutrophilic inflammation, surrounded by a palisade of histiocytes, which are rimmed by a lymphocytic infiltrate. In comparison with the other variants of pyoderma gangrenosum, this subtype usually shows a good response to less aggressive treatments and underlying systemic disorders are less frequently associated. It is considered the most benign and uncommon clinical variant of pyoderma gangrenosum.","definition_xrefs":["Orphanet:538872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyoderma gangrenosum","termid":"MONDO:0018824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"vegetative pyoderma gangrenosum","secondary_identifiers":["GARD:22223","ICD10CM:L88","UMLS:C5680158","MEDGEN:1842944"],"synonyms":[{"name":"Granulomatous pyoderma gangrenosum","type":"exact"}],"termid":"MONDO:0035238","xrefs":{"Monarch":{"xref_id":"0035238"}}}


id: GO:0003235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the sinus venosus over time, from its formation to the mature structure. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac chamber development","termid":"GO:0003205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sinus venosus development","termid":"GO:0003235"}


id: GO:0045863
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving pteridine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of pteridine metabolic process","termid":"GO:0042068"},{"relation_name":"negatively_regulates","term_name":"pteridine metabolic process","termid":"GO:0019889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of pteridine metabolic process","synonyms":[{"name":"down regulation of pteridine metabolic process","type":"exact"},{"name":"down-regulation of pteridine metabolic process","type":"exact"},{"name":"downregulation of pteridine metabolic process","type":"exact"},{"name":"inhibition of pteridine metabolic process","type":"narrow"},{"name":"negative regulation of pteridine metabolism","type":"exact"}],"termid":"GO:0045863"}


id: GO:0080146
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteine + H2O = ammonia + pyruvate + hydrogen sulfide + H+.","definition_xrefs":["PMID:19955263","MetaCyc:LCYSDESULF-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"L-cysteine desulfhydrase activity","secondary_identifiers":["Reactome:R-HSA-1614591","RHEA:24931","Reactome:R-HSA-1614614"],"termid":"GO:0080146"}


id: MONDO:0018284
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete congenital disorder of glycosylation with neurological involvement (obsolete MONDO:0018284)","secondary_identifiers":["Orphanet:371047"],"synonyms":[{"name":"CDG with neurological involvement","type":"exact"}],"termid":"MONDO:0018284","xrefs":{"Monarch":{"xref_id":"0018284"}}}


id: GO:0099068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a postsynapse.","definition_xrefs":["GOC:bf","GOC:dos","GOCL:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"postsynapse organization","termid":"GO:0099173"},{"relation_name":"part_of","term_name":"synapse assembly","termid":"GO:0007416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"postsynapse assembly","synonyms":[{"name":"postsynapse biogenesis","type":"exact"}],"termid":"GO:0099068"}


id: PBO:0069233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 488, pseudogene","termid":"PBO:0069233"}


id: PBO:0082346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase; component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron; expression of a processed form of human homolog SUPV3L1 carrying an N-terminal deletion of 46 amino acids rescues yeast suv3 null mutant","termid":"PBO:0082346"}


id: MONDO:0022934
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Davis Lafer syndrome","secondary_identifiers":["MESH:C535989","MEDGEN:419708","UMLS:C2931077"],"synonyms":[{"name":"Lafer Davis syndrome","type":"related"},{"name":"intellectual disability unusual facies Davis Lafer type","type":"related"},{"name":"mental retardation unusual facies Davis Lafer type","type":"related"}],"termid":"MONDO:0022934","xrefs":{"Monarch":{"xref_id":"0022934"}}}


id: GO:0045131
data:
  {"annotated_genes":["SJAG_00249"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64907],"is_not":false,"summary":null,"term":"GO:0045131"}]},"cv_name":"molecular_function","definition":"Binding to a pre-mRNA branch point sequence, located upstream of the 3' splice site.","definition_xrefs":["PMID:9722632","PMID:11691992"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pre-mRNA binding","termid":"GO:0036002"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00249":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"pre-mRNA branch point binding","references_by_uniquename":{"GO_REF:0000104":null},"termid":"GO:0045131","terms_by_termid":{"GO:0045131":null}}


id: PBO:0069867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1154, pseudogene","termid":"PBO:0069867"}


id: PBO:0059129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPHOSPH6 divergent transcript","termid":"PBO:0059129"}


id: GO:0030961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydroxylation of peptidyl-arginine to form peptidyl-hydroxyarginine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-arginine modification","termid":"GO:0018195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-arginine hydroxylation","termid":"GO:0030961"}


id: PBO:0002952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA export protein Dss1","termid":"PBO:0002952"}


id: PBO:0089219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream binding transcription factor, RNA polymerase I specific, Hmo1","termid":"PBO:0089219"}


id: PBO:0041552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 19 open reading frame 18","termid":"PBO:0041552"}


id: PBO:0040826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BIN3 intronic transcript 1","termid":"PBO:0040826"}


id: GO:0032467
data:
  {"annotated_genes":["SJAG_04468","SJAG_03704","SJAG_01114","SJAG_04597","SJAG_04776","SJAG_04666","SJAG_01188","SJAG_03936","SJAG_02838","SJAG_03581","SJAG_03631","SJAG_01787","SJAG_00514","SJAG_05290","SJAG_03342","SJAG_02392","SJAG_00082","SJAG_01805","SJAG_00845"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89746,94170],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903501"},{"annotations":[87280,110320,113166,94171,94340],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903473"},{"annotations":[103490,119036,110562,90523],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903617"},{"annotations":[104978,93562,117704,77652,106182,92177,113167,115278,89616,106846],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140281"},{"annotations":[94174,87281,92178],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905758"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the division of the cytoplasm of a cell, and its separation into two daughter cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokinesis","termid":"GO:0032465"},{"relation_name":"is_a","term_name":"positive regulation of cell division","termid":"GO:0051781"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"positively_regulates","term_name":"cytokinesis","termid":"GO:0000910"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00514":null,"SJAG_00845":null,"SJAG_01114":null,"SJAG_01188":null,"SJAG_01787":null,"SJAG_01805":null,"SJAG_02392":null,"SJAG_02838":null,"SJAG_03342":null,"SJAG_03581":null,"SJAG_03631":null,"SJAG_03704":null,"SJAG_03936":null,"SJAG_04468":null,"SJAG_04597":null,"SJAG_04666":null,"SJAG_04776":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of cytokinesis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:25866389":null},"secondary_identifiers":["GO:0071777"],"synonyms":[{"name":"activation of cytokinesis","type":"narrow"},{"name":"positive regulation of cell cycle cytokinesis","type":"related"},{"name":"stimulation of cytokinesis","type":"narrow"},{"name":"up regulation of cytokinesis","type":"exact"},{"name":"up-regulation of cytokinesis","type":"exact"},{"name":"upregulation of cytokinesis","type":"exact"}],"termid":"GO:0032467","terms_by_termid":{"GO:0140281":null,"GO:1903473":null,"GO:1903501":null,"GO:1903617":null,"GO:1905758":null}}


id: PBO:0112991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Adaptor in Kre33p-mediated N4-acetylcytidine modification of tRNAs; tRNA-binding protein required for the formation of the modified nucleoside N(4)-acetylcytidine (ac4C) in serine and leucine tRNAs but not required for the same modification in 18S rRNA; protein abundance increases in response to DNA replication stress; contains a conserved THUMP domain, and is homologous to human THUMPD1","termid":"PBO:0112991"}


id: PBO:0079551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 4","termid":"PBO:0079551"}


id: PBO:0074213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 43 member 2","termid":"PBO:0074213"}


id: PBO:0052690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 14","termid":"PBO:0052690"}


id: PBO:0057331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 520f","termid":"PBO:0057331"}


id: MONDO:0001115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polycythemia that occurs in groups of related individuals.","definition_xrefs":["NCIT:C26955"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"polycythemia","termid":"MONDO:0005571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"familial polycythemia","secondary_identifiers":["ICD9:289.6","NANDO:2200644","DOID:10780","MEDGEN:57520","NANDO:2100187","UMLS:C0152264","OMIMPS:133100"],"synonyms":[{"name":"erythrocytosis, familial","type":"exact"},{"name":"familial polycythemia","type":"exact"},{"name":"hereditary polycythemia (disease)","type":"exact"},{"name":"primary polycythemia","type":"narrow"}],"termid":"MONDO:0001115","xrefs":{"Monarch":{"xref_id":"0001115"}}}


id: GO:1901933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of bicyclogermacrene.","definition_xrefs":["PMID:22867794","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene catabolic process","termid":"GO:0051763"},{"relation_name":"is_a","term_name":"bicyclogermacrene metabolic process","termid":"GO:1901932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"bicyclogermacrene catabolic process","synonyms":[{"name":"bicyclogermacrene breakdown","type":"exact"},{"name":"bicyclogermacrene catabolism","type":"exact"},{"name":"bicyclogermacrene degradation","type":"exact"}],"termid":"GO:1901933"}


id: PBO:0076664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thromboxane A synthase 1","termid":"PBO:0076664"}


id: GO:1990071
data:
  {"annotated_genes":["SJAG_02750","SJAG_04618","SJAG_04358","SJAG_01415","SJAG_04021","SJAG_02655","SJAG_03467","SJAG_02525","SJAG_04837","SJAG_03663"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[71082,74788,88408,89092,97079,98889,99548,102316,103162,109624],"is_not":false,"summary":null,"term":"GO:1990071"}]},"cv_name":"cellular_component","definition":"A complex that mediates intra-Golgi traffic, Golgi exit, endosome-to-Golgi traffic, and the trafficking of autophagy proteins from Golgi to the phagophore assembly site. Binds to a component of the COPI coat. In yeast it includes the following subunits: Bet3 (as homodimer), Bet5, Tca17, Trs20, Trs23, Trs31, Trs33, Trs65, Trs120, Trs130. The whole complex is thought to dimerize with itself.","definition_xrefs":["PMID:22669257","GOC:bhm","PMID:20375281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TRAPP complex","termid":"GO:0030008"},{"relation_name":"part_of","term_name":"endosome","termid":"GO:0005768"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"}],"gene_count":10,"genes_by_uniquename":{"SJAG_01415":null,"SJAG_02525":null,"SJAG_02655":null,"SJAG_02750":null,"SJAG_03467":null,"SJAG_03663":null,"SJAG_04021":null,"SJAG_04358":null,"SJAG_04618":null,"SJAG_04837":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005794","GO:0005768","GO:0032991","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"TRAPPII protein complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:1990071","terms_by_termid":{"GO:1990071":null}}


id: MONDO:0012143
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"familial hemolytic anemia","termid":"MONDO:0003689"},{"relation_name":"is_a","term_name":"disorder of carbohydrate transmembrane transport and absorption","termid":"MONDO:0017706"},{"relation_name":"is_a","term_name":"hereditary stomatocytosis","termid":"MONDO:0020102"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0037792","MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"hereditary cryohydrocytosis with reduced stomatin","secondary_identifiers":["Orphanet:168577","MESH:C563840","UMLS:C1837206","GARD:17036","icd11.foundation:1459095719","MEDGEN:332390","OMIM:608885"],"synonyms":[{"name":"ChC type 2","type":"exact"},{"name":"GLUT1 deficiency syndrome with pseudohyperkalemia and hemolysis","type":"related"},{"name":"SDCHCN","type":"related"},{"name":"cryohydrocytosis, stomatin-deficient, with intellectual disability, seizures, cataracts, and massive hepatosplenomegaly","type":"related"},{"name":"cryohydrocytosis, stomatin-deficient, with mental retardation, seizures, cataracts, and massive hepatosplenomegaly","type":"related"},{"name":"hereditary cryohydrocytosis type 2","type":"exact"},{"name":"sdCHC","type":"exact"},{"name":"stomatin-deficient cryohydrocytosis","type":"exact"},{"name":"stomatin-deficient cryohydrocytosis with neurologic defects","type":"related"}],"termid":"MONDO:0012143","xrefs":{"Monarch":{"xref_id":"0012143"}}}


id: SO:0000547
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome generated by recombination between two inversions; there is a duplication at each end of the inversion.","definition_xrefs":["FB:km"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intrachromosomal_duplication","termid":"SO:1000038"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inversion_derived_bipartite_duplication","synonyms":[{"name":"inversion derived bipartite duplication","type":"exact"}],"termid":"SO:0000547"}


id: PBO:0050554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemopexin","termid":"PBO:0050554"}


id: PBO:0077282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 25","termid":"PBO:0077282"}


id: PATO:0000620
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally dorsal structures.","definition_xrefs":["PATOC:melissa"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malformed","termid":"PATO:0000646"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dorsalized","termid":"PATO:0000620"}


id: PBO:0053928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1227","termid":"PBO:0053928"}


id: PBO:0061503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurensin 2","termid":"PBO:0061503"}


id: GO:0070196
data:
  {"annotated_genes":["SJAG_02376"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111137],"is_not":false,"summary":null,"term":"GO:0070196"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the eukaryotic translation initiation factor 3 complex.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02376":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 complex assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"eIF-3 assembly","type":"exact"},{"name":"eIF3 assembly","type":"exact"}],"termid":"GO:0070196","terms_by_termid":{"GO:0070196":null}}


id: PBO:0041156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 pseudogene 11","termid":"PBO:0041156"}


id: GO:0070403
data:
  {"annotated_genes":["SJAG_01075","SJAG_03152","SJAG_04652","SJAG_04039","SJAG_04186"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70490,71972,77074,78393,111770],"is_not":false,"summary":null,"term":"GO:0070403"}]},"cv_name":"molecular_function","definition":"Binding to the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"NAD binding","termid":"GO:0051287"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01075":null,"SJAG_03152":null,"SJAG_04039":null,"SJAG_04186":null,"SJAG_04652":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"NAD+ binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"NAD (oxidized) binding","type":"exact"},{"name":"NAD binding","type":"related"},{"name":"oxidized NAD binding","type":"exact"},{"name":"oxidized nicotinamide adenine dinucleotide binding","type":"exact"}],"termid":"GO:0070403","terms_by_termid":{"GO:0070403":null}}


id: MONDO:0014727
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 45","secondary_identifiers":["OMIM:616669","UMLS:C4225252","DOID:0111994","MEDGEN:901044"],"synonyms":[{"name":"IMD45","type":"exact"},{"name":"immunodeficiency 45","type":"exact"},{"name":"immunodeficiency type 45","type":"exact"}],"termid":"MONDO:0014727","xrefs":{"Monarch":{"xref_id":"0014727"}}}


id: PBO:0075050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-13","termid":"PBO:0075050"}


id: PBO:0072031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 1","termid":"PBO:0072031"}


id: PBO:0060978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal guanine nucleotide exchange factor","termid":"PBO:0060978"}


id: MONDO:0000617
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Her2-receptor positive breast cancer (obsolete MONDO:0000617)","termid":"MONDO:0000617","xrefs":{"Monarch":{"xref_id":"0000617"}}}


id: PBO:0073423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor 1","termid":"PBO:0073423"}


id: GO:2001159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein localization by the Cvt pathway.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular protein transport","termid":"GO:0033157"},{"relation_name":"is_a","term_name":"regulation of vacuolar transport","termid":"GO:1903335"},{"relation_name":"is_a","term_name":"regulation of protein targeting","termid":"GO:1903533"},{"relation_name":"regulates","term_name":"cytoplasm to vacuole targeting by the Cvt pathway","termid":"GO:0032258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006605"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006605","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of protein localization by the Cvt pathway","synonyms":[{"name":"regulation of cytoplasm to vacuole targeting","type":"exact"},{"name":"regulation of cytoplasm-to-vacuole targeting","type":"exact"}],"termid":"GO:2001159"}


id: GO:0010092
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process in which the identity of an animal organ primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"part_of","term_name":"animal organ formation","termid":"GO:0048645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of animal organ identity","termid":"GO:0010092"}


id: GO:0008815
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: citrate = acetate + oxaloacetate.","definition_xrefs":["RHEA:10760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"citrate (pro-3S)-lyase activity","secondary_identifiers":["EC:4.1.3.6","KEGG_REACTION:R00362","MetaCyc:CITLY-RXN"],"synonyms":[{"name":"citrase activity","type":"related"},{"name":"citratase activity","type":"related"},{"name":"citrate aldolase activity","type":"related"},{"name":"citrate lyase","type":"narrow"},{"name":"citrate lyase activity","type":"exact"},{"name":"citrate oxaloacetate-lyase [(pro-3S)-CH2COO-->acetate]","type":"related"},{"name":"citrate oxaloacetate-lyase activity","type":"related"},{"name":"citric aldolase activity","type":"related"},{"name":"citridesmolase activity","type":"related"},{"name":"citritase activity","type":"related"}],"termid":"GO:0008815"}


id: MONDO:0003768
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare cervical mucinous adenocarcinoma characterized by the presence of signet ring cells.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cervical mucinous adenocarcinoma","termid":"MONDO:0002742"},{"relation_name":"is_a","term_name":"signet ring cell carcinoma","termid":"MONDO:0005092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"signet ring cell variant cervical mucinous adenocarcinoma","secondary_identifiers":["MEDGEN:273126","ONCOTREE:SCEMU","DOID:6101","NCIT:C40205","UMLS:C1516424"],"synonyms":[{"name":"cervical mucinous adenocarcinoma, signet Ring cell type","type":"exact"},{"name":"cervical mucinous adenocarcinoma, signet Ring cell variant","type":"exact"},{"name":"signet ring mucinous carcinoma","type":"related"}],"termid":"MONDO:0003768","xrefs":{"Monarch":{"xref_id":"0003768"}}}


id: PBO:0043222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chloride channel accessory 1","termid":"PBO:0043222"}


id: PBO:0088171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Xanthine-guanine phosphoribosyl transferase; required for xanthine utilization and for optimal utilization of guanine","termid":"PBO:0088171"}


id: GO:0005464
data:
  {"annotated_genes":["SJAG_00434"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77378],"is_not":false,"summary":null,"term":"GO:0005464"}]},"cv_name":"molecular_function","definition":"Enables the transfer of UDP-xylose from one side of a membrane to the other. UDP-xylose is a substance composed of xylose in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"},{"relation_name":"is_a","term_name":"pyrimidine nucleotide-sugar transmembrane transporter activity","termid":"GO:0015165"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00434":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"UDP-xylose transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-742373"],"termid":"GO:0005464","terms_by_termid":{"GO:0005464":null}}


id: GO:0052190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of phagocytosis, the engulfing by phagocytes of external particulate material, in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host phagocytosis (obsolete GO:0052190)","termid":"GO:0052190"}


id: GO:0015573
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of beta-glucosides from one side of a membrane to the other. Beta-glucosides are glycosides in which the sugar group is a glucose residue, and the anomeric carbon of the bond is in a beta configuration.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","ISBN:0198506732","PMID:7883710","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucoside transmembrane transporter activity","termid":"GO:0042947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"beta-glucoside transmembrane transporter activity","secondary_identifiers":["GO:0015582"],"synonyms":[{"name":"beta-glucoside permease activity","type":"exact"}],"termid":"GO:0015573"}


id: PBO:0055290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2717","termid":"PBO:0055290"}


id: GO:0042598
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any of the small, heterogeneous, artifactual, vesicular particles that are formed when some cells are homogenized.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete vesicular fraction (obsolete GO:0042598)","synonyms":[{"name":"vesicular fraction","type":"exact"}],"termid":"GO:0042598"}


id: PBO:0083334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the characterized ORF BDF1/YLR399C","termid":"PBO:0083334"}


id: MONDO:0024886
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign adenofibroma characterized by the presence of serous secretory cells and minute cystic spaces filled with watery fluid. A representative example is the ovarian serous adenofibroma. Cases with epithelial atypia described in the ovary lacking stromal invasion are designated as borderline serous adenofibromas and have a low grade malignant potential.","definition_xrefs":["NCIT:C67090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenofibroma","termid":"MONDO:0006071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serous adenofibroma","secondary_identifiers":["MEDGEN:87253","ICDO:9014/0","UMLS:C0334498"],"synonyms":[{"name":"serous adenofibroma","type":"exact"}],"termid":"MONDO:0024886","xrefs":{"Monarch":{"xref_id":"0024886"}}}


id: PBO:0062555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily A member 2","termid":"PBO:0062555"}


id: PBO:0052983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphocyte activating 3","termid":"PBO:0052983"}


id: PBO:0041023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BPI fold containing family B member 6","termid":"PBO:0041023"}


id: MONDO:0044351
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An disease or disorder caused by infection with Schistosoma intercalatum.","definition_xrefs":["MONDO:patterns/specific_infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"schistosomiasis","termid":"MONDO:0015254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schistosoma intercalatum infectious disease","secondary_identifiers":["NCIT:C35364","UMLS:C0276932","ICD9:120.8","MEDGEN:124448","SCTID:52179003"],"synonyms":[{"name":"Schistosoma intercalatum caused disease or disorder","type":"exact"},{"name":"Schistosoma intercalatum disease or disorder","type":"exact"},{"name":"infection by Schistosoma intercalatum","type":"exact"},{"name":"infection caused by Schistosoma intercalatum","type":"related"}],"termid":"MONDO:0044351","xrefs":{"Monarch":{"xref_id":"0044351"}}}


id: GO:0034551
data:
  {"annotated_genes":["SJAG_01141","SJAG_01405","SJAG_04560","SJAG_03099","SJAG_05305"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[60276,76591,78002,107395,112653],"is_not":false,"summary":null,"term":"GO:0034551"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the cytochrome bc(1) complex (also known as ubiquinol-cytochrome c reductase), in the mitochondrial inner membrane.","definition_xrefs":["GOC:mcc","GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory chain complex III assembly","termid":"GO:0017062"},{"relation_name":"is_a","term_name":"mitochondrial respiratory chain complex assembly","termid":"GO:0033108"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01141":null,"SJAG_01405":null,"SJAG_03099":null,"SJAG_04560":null,"SJAG_05305":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007005","GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"mitochondrial respiratory chain complex III assembly","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9865881"],"synonyms":[{"name":"mitochondrial cytochrome bc(1) complex assembly","type":"exact"}],"termid":"GO:0034551","terms_by_termid":{"GO:0034551":null}}


id: GO:0047113
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a quinone + an aldehyde + H2O = a carboxylate + a quinol + H+.","definition_xrefs":["RHEA:13881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors","termid":"GO:0016903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"aldehyde dehydrogenase (quinone) activity","secondary_identifiers":["EC:1.2.5.2","MetaCyc:1.2.99.3-RXN"],"synonyms":[{"name":"aldehyde dehydrogenase (acceptor) activity","type":"related"},{"name":"aldehyde dehydrogenase (pyrroloquinoline-quinone)","type":"related"},{"name":"aldehyde:(pyrroloquinoline-quinone) oxidoreductase activity","type":"related"}],"termid":"GO:0047113"}


id: GO:0001196
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any mating-type specific process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of mating-type specific transcription from RNA polymerase II promoter (obsolete GO:0001196)","termid":"GO:0001196"}


id: GO:1990531
data:
  {"annotated_genes":["SJAG_02897","SJAG_03050","SJAG_01731","SJAG_02516"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[94180,97702,102123,104877],"is_not":false,"summary":null,"term":"GO:1990531"}]},"cv_name":"cellular_component","definition":"A protein complex that functions as a phospholipid-translocating P-Type ATPase.","definition_xrefs":["GOC:dph","PMID:15090616","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transporter complex","termid":"GO:1990351"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01731":null,"SJAG_02516":null,"SJAG_02897":null,"SJAG_03050":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"phospholipid-translocating ATPase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"APLT complex","type":"exact"},{"name":"CDC50-DRS2 complex","type":"narrow"},{"name":"CRF1-DNF3 complex","type":"narrow"},{"name":"DNF3-CRF1 complex","type":"narrow"},{"name":"DRS2-CDC50 complex","type":"narrow"},{"name":"Dnf1-Lem3 complex","type":"narrow"},{"name":"Dnf2-Lem3 complex","type":"narrow"},{"name":"Lem3-Dnf1 complex","type":"narrow"},{"name":"Lem3p-Dnf1p complex","type":"narrow"},{"name":"P4-ATPase complex","type":"exact"},{"name":"aminophospholipid translocase complex","type":"exact"},{"name":"phospholipid flippase complex","type":"exact"}],"termid":"GO:1990531","terms_by_termid":{"GO:1990531":null}}


id: MONDO:0014226
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare primary immunodeficiency disorder characterized by persistent CD4 T-cell lymphopenia (less than 300 cells/B5L on multiple occasions) not associated with any other underlying primary or secondary immune deficiency. Patients typically present opportunistic infections (with cryptococcal, mycobacterial, candidal, varicella zoster virus infections and progressive multifocal leukoencephalopathy being the most prevalent), malignancies (mainly lymphoproliferative disorders), or autoimmune disorders. Some individuals are asymptomatic and incidentally diagnosed.","definition_xrefs":["Orphanet:228000"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"},{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"idiopathic CD4 lymphocytopenia","secondary_identifiers":["UMLS:C3809768","GARD:12375","DOID:0111987","MEDGEN:816098","icd11.foundation:1639000446","OMIM:615518","SCTID:763713000"],"synonyms":[{"name":"ICL","type":"related"},{"name":"IMD13","type":"related"},{"name":"idiopathic CD4 positive T-lymphocytopenia","type":"related"},{"name":"idiopathic Cd4 lymphopenia","type":"related"},{"name":"immunodeficiency 13","type":"related"},{"name":"immunodeficiency type 13","type":"exact"}],"termid":"MONDO:0014226","xrefs":{"Monarch":{"xref_id":"0014226"}}}


id: FYPO:0004959
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the mitochondrion is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"},{"relation_name":"is_a","term_name":"normal mitochondrion","termid":"FYPO:0006034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal level of substance in mitochondrion","synonyms":[{"name":"normal level of substance in mitochondria","type":"exact"},{"name":"normal level of substance in mitochondrion during mitotic cell cycle","type":"related"},{"name":"normal level of substance in mitochondrion during vegetative growth","type":"exact"},{"name":"normal mitochondrial level of substance","type":"exact"}],"termid":"FYPO:0004959"}


id: PR:Q10271
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- arb2 gene.","definition_xrefs":["UniProtKB:Q10271","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argonaute-binding protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13G7.07","synonyms":[{"name":"Spom972h-arb2","type":"exact"}],"termid":"PR:Q10271"}


id: GO:0061548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a ganglion over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"},{"relation_name":"part_of","term_name":"nervous system development","termid":"GO:0007399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ganglion development","synonyms":[{"name":"ganglia development","type":"related"},{"name":"gangliogenesis","type":"narrow"}],"termid":"GO:0061548"}


id: PBO:0116310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospho-2-dehydro-3-deoxyheptonate aldolase Aro3","termid":"PBO:0116310"}


id: GO:0021761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the limbic system over time from its initial formation until its mature state. The limbic system is a collection of structures in the brain involved in emotion, motivation and emotional aspects of memory.","definition_xrefs":["GOC:cls","GOC:jid","ISBN:0878937420","GO_REF:0000021","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"system development","termid":"GO:0048731"},{"relation_name":"part_of","term_name":"forebrain development","termid":"GO:0030900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"limbic system development","termid":"GO:0021761"}


id: MONDO:0060760
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual developmental disorder with dysmorphic facies and behavioral abnormalities","secondary_identifiers":["UMLS:C4748135","MEDGEN:1648498","OMIM:618089"],"synonyms":[{"name":"IDDFBA","type":"related"},{"name":"INTELLECTUAL developmental disorder with DYSMORPHIC facies and behavioral abnormalities","type":"related"},{"name":"INTELLECTUAL developmental disorder with DYSMORPHIC facies and behavioural abnormalities","type":"related"}],"termid":"MONDO:0060760","xrefs":{"Monarch":{"xref_id":"0060760"}}}


id: PBO:0055814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipin 2","termid":"PBO:0055814"}


id: SO:0001753
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A SL2_acceptor_site which appends the SL8 RNA leader sequence to the 5' end of an mRNA. SL8 acceptor sites occur in genes in internal segments of polycistronic transcripts.","definition_xrefs":["SO:nlw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SL2_acceptor_site","termid":"SO:0000709"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SL8_acceptor_site","synonyms":[{"name":"SL8 acceptor site","type":"exact"}],"termid":"SO:0001753"}


id: PBO:0069341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 601, pseudogene","termid":"PBO:0069341"}


id: GO:0044840
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lysosome-related organelle contained within the intestinal cells of the nematode C. elegans. Gut granules are acidified, birefringent, autofluorescent, and contain the vacuolar H+-ATPase. They also serve as sites of cellular zinc storage.","definition_xrefs":["PMID:22916203","GOC:kmv","PMID:24204312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle","termid":"GO:0031410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"gut granule","termid":"GO:0044840"}


id: GO:0072573
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Tolerance induction directed at lipopolysaccharide antigens.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tolerance induction","termid":"GO:0002507"},{"relation_name":"is_a","term_name":"negative regulation of lipopolysaccharide-mediated signaling pathway","termid":"GO:0031665"},{"relation_name":"part_of","term_name":"cellular response to lipopolysaccharide","termid":"GO:0071222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"tolerance induction to lipopolysaccharide","synonyms":[{"name":"tolerance induction to LPS","type":"exact"},{"name":"tolerance induction to endotoxin","type":"broad"}],"termid":"GO:0072573"}


id: FYPO:0004263
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a normal proportion of cells in the population remains viable after entering stationary phase, under conditions of nitrogen limitation, such as in a medium that contains a low level of NH4Cl and no other nitrogen source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal viability in stationary phase","termid":"FYPO:0001310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000257","FYPO:0002057"],"is_obsolete":false,"name":"normal viability in stationary phase during nitrogen limitation","synonyms":[{"name":"normal cell population viability in stationary phase during nitrogen limitation","type":"exact"}],"termid":"FYPO:0004263"}


id: PBO:0053597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 624","termid":"PBO:0053597"}


id: GO:0010548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of thylakoid membrane disassembly.","definition_xrefs":["GOC:tb","GOC:dph","PMID:17416733"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane disassembly","termid":"GO:0010549"},{"relation_name":"regulates","term_name":"thylakoid membrane disassembly","termid":"GO:0010547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"regulation of thylakoid membrane disassembly","synonyms":[{"name":"regulation of thylakoid membrane degradation","type":"exact"}],"termid":"GO:0010548"}


id: FYPO:0002981
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) in a mutant is increased during a cellular response to methyl methanesulfonate. The affected gene product may be encoded by the mutated gene, or by a different gene, and may normally bind DNA, protein, or both in chromatin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased chromatin binding","termid":"FYPO:0002980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000702","FYPO:0000652"],"is_obsolete":false,"name":"increased chromatin binding during cellular response to methyl methanesulfonate","synonyms":[{"name":"increased chromatin binding during cellular response to MMS","type":"exact"},{"name":"increased chromatin binding during cellular response to methyl methanesulphonate","type":"exact"}],"termid":"FYPO:0002981"}


id: PBO:0004577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"imidazoleglycerol-phosphate synthase (predicted)","termid":"PBO:0004577"}


id: PBO:0084918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Molecular chaperone involved in protein folding in ER; mutation causes defects in cell wall synthesis and lysis of autophagic bodies, suppresses tor2 mutations, and is synthetically lethal with kar2-1 and with rot2 mutations; involved in N-linked glycosylation and O-mannosylation; transmembrane helix Ser250 is essential for Rot1p to interact with other membrane components and exert its functional role, avoiding exposure of Ser H-bonding group at lipid-exposed surface","termid":"PBO:0084918"}


id: PBO:0017606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex subunit Chk1","termid":"PBO:0017606"}


id: PBO:0078990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA suppressor (anticodon TTA) 3-1","termid":"PBO:0078990"}


id: MONDO:0020557
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A pleuropulmonary blastoma characterized by a solid pattern and sarcomatous features. It usually follows an aggressive clinical course.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pleuropulmonary blastoma","termid":"MONDO:0011014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pleuropulmonary blastoma type 3","secondary_identifiers":["Orphanet:99935","SCTID:707673006","UMLS:C1710499","MEDGEN:328132","NCIT:C45628","GARD:19717","ICD9:162.9"],"synonyms":[{"name":"type III pleuropulmonary blastoma","type":"exact"}],"termid":"MONDO:0020557","xrefs":{"Monarch":{"xref_id":"0020557"}}}


id: PBO:0000855
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.6.1.1","termid":"PBO:0000855"}


id: PBO:0080935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YY1 transcription factor pseudogene 1","termid":"PBO:0080935"}


id: MONDO:0859571
data:
  {"annotated_genes":["SJAG_03786"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85480],"is_not":false,"summary":null,"term":"MONDO:0859571"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital diaphragmatic hernia","termid":"MONDO:0005711"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03786":null},"genotype_count":0,"is_obsolete":false,"name":"diaphragmatic hernia 4, with cardiovascular defects","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1823983","OMIM:620025","UMLS:C5774210"],"termid":"MONDO:0859571","terms_by_termid":{"MONDO:0859571":null},"xrefs":{"Monarch":{"xref_id":"0859571"}}}


id: SO:0000132
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A single stranded oligo used for polymerase chain reaction.","direct_ancestors":[{"relation_name":"has_quality","term_name":"reverse","termid":"SO:0001031"},{"relation_name":"is_a","term_name":"primer","termid":"SO:0000112"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reverse_primer","synonyms":[{"name":"DNA reverse primer","type":"exact"},{"name":"reverse DNA primer","type":"exact"},{"name":"reverse primer","type":"exact"},{"name":"reverse primer oligo","type":"exact"},{"name":"reverse primer oligonucleotide","type":"exact"},{"name":"reverse primer sequence","type":"exact"}],"termid":"SO:0000132"}


id: PBO:0065422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 20S subunit beta 8","termid":"PBO:0065422"}


id: GO:1905091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of type 2 mitophagy.","definition_xrefs":["PMID:26942284","PMID:25009776","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mitophagy","termid":"GO:1901526"},{"relation_name":"is_a","term_name":"regulation of type 2 mitophagy","termid":"GO:1905089"},{"relation_name":"positively_regulates","term_name":"type 2 mitophagy","termid":"GO:0061734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006914"},{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006914"],"is_obsolete":false,"name":"positive regulation of type 2 mitophagy","synonyms":[{"name":"activation of parkin-mediated mitophagy in response to mitochondrial depolarization","type":"narrow"},{"name":"positive regulation of PRKN-mediated stimulation of mitophagy in response to mitochondrial depolarization","type":"exact"},{"name":"positive regulation of Park2-mediated stimulation of mitophagy in response to mitochondrial depolarization","type":"exact"},{"name":"positive regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization","type":"exact"}],"termid":"GO:1905091"}


id: GO:0014918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which pressure natriuresis increases rate of natriuresis.","definition_xrefs":["GOC:mtg_cardio"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of natriuresis by pressure natriuresis (obsolete GO:0014918)","synonyms":[{"name":"positive regulation of natriuresis by pressure natriuresis","type":"exact"}],"termid":"GO:0014918"}


id: MONDO:0005488
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A scoliosis with no known cause arising in adolescent.","definition_xrefs":["EFO:0005423"],"direct_ancestors":[{"relation_name":"is_a","term_name":"idiopathic scoliosis","termid":"MONDO:0000726"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adolescent idiopathic scoliosis","secondary_identifiers":["MEDGEN:450543","UMLS:C0410702","SCTID:203646004","Orphanet:3153"],"termid":"MONDO:0005488","xrefs":{"Monarch":{"xref_id":"0005488"}}}


id: MONDO:0017452
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-syndromic brachydactyly that involves the pes.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic brachydactyly","termid":"MONDO:0017424"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-syndromic brachydactyly of toes","secondary_identifiers":["ICD9:755.66","Orphanet:294998","UMLS:C0432029","MEDGEN:609304","SCTID:205346006"],"synonyms":[{"name":"non-syndromic brachydactyly of pes","type":"exact"},{"name":"pes non-syndromic brachydactyly","type":"exact"},{"name":"short toes","type":"exact"}],"termid":"MONDO:0017452","xrefs":{"Monarch":{"xref_id":"0017452"}}}


id: PBO:0083698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Epsilon subunit of the oligosaccharyltransferase complex; located in the ER lumen; catalyzes asparagine-linked glycosylation of newly synthesized proteins","termid":"PBO:0083698"}


id: GO:0009059
data:
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id: GO:1901993
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id: GO:0043503
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id: GO:0046861
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a glyoxysome.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxisomal membrane","termid":"GO:0005778"},{"relation_name":"part_of","term_name":"glyoxysome","termid":"GO:0009514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005777"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005777","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"glyoxysomal membrane","synonyms":[{"name":"glyoxysome membrane","type":"exact"}],"termid":"GO:0046861"}


id: MONDO:0008158
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dacryocystitis - osteopoikilosis is an exceedingly rare autosomal dominant disorder reported in only a few patients to date and is characterized by dacryocystitis due to lacrimal canal stenosis,and osteopoikilosis (demonastratedr adiologically as discrete spherical osteosclerotic lesions of 2-10mm in diameter).","definition_xrefs":["Orphanet:1562"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with increased bone density (obsolete MONDO:0019703)","termid":"MONDO:0019703"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"dacryocystitis-osteopoikilosis syndrome","secondary_identifiers":["SCTID:721082002","MEDGEN:318939","UMLS:C1833698","GARD:351","MESH:C536061","OMIM:166705"],"synonyms":[{"name":"Gunal Seber Basaran syndrome","type":"related"},{"name":"Gunal-Seber-Basaran syndrome","type":"exact"},{"name":"dacryocystitis osteopoikilosis","type":"related"},{"name":"osteopoikilosis and dacryocystitis","type":"related"}],"termid":"MONDO:0008158","xrefs":{"Monarch":{"xref_id":"0008158"}}}


id: GO:0004717
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jid"],"gene_count":0,"genotype_count":0,"name":"obsolete focal adhesion kinase activity (obsolete GO:0004717)","synonyms":[{"name":"FAK","type":"exact"},{"name":"focal adhesion kinase activity","type":"exact"}],"termid":"GO:0004717"}


id: PBO:0071974
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 2","termid":"PBO:0071974"}


id: PBO:0049689
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heart and neural crest derivatives expressed 2","termid":"PBO:0049689"}


id: GO:1990606
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  {"annotated_genes":["SJAG_02848","SJAG_02384"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99752,102557],"is_not":false,"summary":null,"term":"GO:1990606"}]},"cv_name":"molecular_function","definition":"Generation of a 'twisting' activity resulting in the scission of a membrane, driven by GTP hydrolysis.","definition_xrefs":["PMID:11242086","PMID:24515348","PMID:23530241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTPase motor activity","termid":"GO:0061791"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02384":null,"SJAG_02848":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003774"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003924"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003924","GO:0016787","GO:0003774","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"membrane scission GTPase motor activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990606","terms_by_termid":{"GO:1990606":null}}


id: PATO:0001986
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  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's passing into solution.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solubility","termid":"PATO:0001536"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dissolved","termid":"PATO:0001986"}


id: PBO:0039473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 18C, pseudogene","termid":"PBO:0039473"}


id: PBO:0039410
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase promoting complex subunit 15","termid":"PBO:0039410"}


id: GO:0010742
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a monocyte acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions.","definition_xrefs":["GOC:add","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"foam cell differentiation","termid":"GO:0090077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macrophage derived foam cell differentiation","termid":"GO:0010742"}


id: PATO:0000019
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  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A chromatic property that is the relative position of different hues or degrees of saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spatial pattern","termid":"PATO:0000060"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"color pattern","termid":"PATO:0000019"}


id: GO:0062051
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein-containing complex that functions to transport lipopolysaccharide from its site of synthesis at the cytoplasmic membrane across the periplasm to the outer membrane in an ATP-dependent manner.","definition_xrefs":["PMID:29449493"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transporter complex","termid":"GO:1990351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"lipopolysaccharide transport system","termid":"GO:0062051"}


id: PBO:0050756
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 18","termid":"PBO:0050756"}


id: GO:0018495
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-hydroxycyclohexane-1-carboxyl-CoA = 2 H+ + 2 e- + 2-ketocyclohexane-1-carboxyl-CoA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-hydroxycyclohexane-1-carboxyl-CoA dehydrogenase activity (obsolete GO:0018495)","termid":"GO:0018495"}


id: PBO:0078532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 25","termid":"PBO:0078532"}


id: SO:0001127
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of four or five consecutive residues and one H-bond in which: residue(i) is Serine (S) or Threonine (T), the side-chain OH of residue(i) is H-bonded to the main-chain CO of residue(i3) or (i4), Phi angles of residues(i1), (i2) and (i3) are negative.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_secondary_structure","termid":"SO:0001078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"serine_threonine_staple_motif","secondary_identifiers":["BS:00230"],"synonyms":[{"name":"serine threonine staple motif","type":"exact"},{"name":"st_staple","type":"exact"}],"termid":"SO:0001127"}


id: GO:0043609
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  {"annotated_genes":["SJAG_02785"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69727],"is_not":false,"summary":null,"term":"GO:0043609"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of carbon utilization.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to nutrient levels","termid":"GO:0032107"},{"relation_name":"regulates","term_name":"carbon utilization","termid":"GO:0015976"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02785":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of carbon utilization","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0043609","terms_by_termid":{"GO:0043609":null}}


id: GO:1903145
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any actin filament that is part of a cell cortex of cell tip.","definition_xrefs":["GOC:TermGenie","PMID:24954052","PMID:20807799","GO_REF:0000064"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament","termid":"GO:0005884"},{"relation_name":"part_of","term_name":"cell cortex of cell tip","termid":"GO:0051285"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0015629","GO:0005575","GO:0005737","GO:0005938"],"is_obsolete":false,"name":"actin filament of cell cortex of cell tip","synonyms":[{"name":"actin filament of cell cortex of cell end","type":"exact"},{"name":"microfilament of cell cortex of cell end","type":"exact"},{"name":"microfilament of cell cortex of cell tip","type":"exact"}],"termid":"GO:1903145"}


id: PBO:0063858
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"p53-induced death domain protein 1","termid":"PBO:0063858"}


id: GO:0030932
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An ADPG pyrophosphorylase complex found in the amyloplast.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid ADPG pyrophosphorylase complex","termid":"GO:0031009"},{"relation_name":"part_of","term_name":"amyloplast","termid":"GO:0009501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"amyloplast ADPG pyrophosphorylase complex","termid":"GO:0030932"}


id: PBO:0078707
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAG) 1-2","termid":"PBO:0078707"}


id: PR:O59824
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent zinc metalloprotease FtsH that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO05014","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent zinc metalloprotease YME1 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC965.04c","secondary_identifiers":["UniProtKB:O59824"],"synonyms":[{"name":"Spom972h-ftsH","type":"exact"}],"termid":"PR:O59824"}


id: MONDO:0006487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenoid cystic carcinoma that arises from the vagina. Myoepithelial cells are usually not present.","definition_xrefs":["NCIT:C40261"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenoid cystic carcinoma","termid":"MONDO:0004971"},{"relation_name":"is_a","term_name":"vaginal adenocarcinoma","termid":"MONDO:0020653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"vaginal adenoid cystic carcinoma","secondary_identifiers":["MEDGEN:274376","UMLS:C1519912"],"synonyms":[{"name":"vaginal adenoid cystic cancer","type":"exact"},{"name":"vaginal adenoid cystic carcinoma","type":"exact"}],"termid":"MONDO:0006487","xrefs":{"Monarch":{"xref_id":"0006487"}}}


id: GO:0031599
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The regulatory subcomplex of a proteasome located in the endoplasmic reticulum of a cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ER proteasome regulatory particle (obsolete GO:0031599)","termid":"GO:0031599"}


id: FYPO:0004237
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin at centromere outer repeat regions of a chromosome is decreased.","definition_xrefs":["PomBase:mah","PMID:20299449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001131"},{"relation_name":"is_a","term_name":"increased protein localization to chromatin at centromere outer repeat","termid":"FYPO:0006682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased protein localization to heterochromatin at centromere outer repeat","synonyms":[{"name":"increased protein localisation to heterochromatin at centromere otr","type":"exact"},{"name":"increased protein localisation to heterochromatin at centromere outer repeat","type":"exact"},{"name":"increased protein localisation to heterochromatin at centromeric outer repeat region","type":"exact"},{"name":"increased protein localisation to heterochromatin at pericentric region","type":"related"},{"name":"increased protein localisation to heterochromatin at pericentromeric region","type":"related"},{"name":"increased protein localization to heterochromatin at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"increased protein localization to heterochromatin at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0004237"}


id: PBO:0067310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 396, pseudogene","termid":"PBO:0067310"}


id: MONDO:0000384
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign abnormal growth of the cells that comprise the bladder.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign urinary system neoplasm","termid":"MONDO:0004180"},{"relation_name":"is_a","term_name":"urinary bladder neoplasm","termid":"MONDO:0004987"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bladder benign neoplasm","secondary_identifiers":["UMLS:C0154017","MEDGEN:57811","ICD10CM:D30.3","ICD9:223.3","NCIT:C3618","SCTID:91992005","DOID:0050623"],"synonyms":[{"name":"benign bladder neoplasm","type":"exact"},{"name":"benign bladder tumor","type":"exact"},{"name":"benign bladder tumour","type":"exact"},{"name":"benign neoplasm of bladder","type":"exact"},{"name":"benign neoplasm of the bladder","type":"exact"},{"name":"benign neoplasm of the urinary bladder","type":"exact"},{"name":"benign neoplasm of urinary bladder","type":"exact"},{"name":"benign tumor of bladder","type":"exact"},{"name":"benign tumor of the bladder","type":"exact"},{"name":"benign tumor of the urinary bladder","type":"exact"},{"name":"benign tumor of urinary bladder","type":"exact"},{"name":"benign tumour of bladder","type":"exact"},{"name":"benign tumour of the bladder","type":"exact"},{"name":"benign tumour of the urinary bladder","type":"exact"},{"name":"benign tumour of urinary bladder","type":"exact"},{"name":"benign urinary bladder neoplasm","type":"exact"},{"name":"benign urinary bladder tumor","type":"exact"},{"name":"benign urinary bladder tumour","type":"exact"},{"name":"urinary bladder benign neoplasm","type":"exact"}],"termid":"MONDO:0000384","xrefs":{"Monarch":{"xref_id":"0000384"}}}


id: PBO:0045686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain LC8-type 1 pseudogene 6","termid":"PBO:0045686"}


id: MONDO:0015379
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cervical dermoid cyst is a rare, benign cutaneous neoplasm containing keratinized epithelium and dermal derivatives, such as hair follicles, sweat and sebaceous glands, smooth muscle or fibroadipose tissue which usually manifests as a slow-growing, painless mass in the submandibular or sublingual space. Depending on the location, and especially after sudden enlargement, it can cause dyspnea, dysphagia or dysphonia.","definition_xrefs":["Orphanet:141046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermoid cyst","termid":"MONDO:0002378"},{"relation_name":"is_a","term_name":"cysts and fistulae of the face and oral cavity","termid":"MONDO:0015476"},{"relation_name":"is_a","term_name":"neoplasm of neck","termid":"MONDO:0021351"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical dermoid cyst","secondary_identifiers":["GARD:19937","MEDGEN:1643725","UMLS:C4706299","SCTID:763129001"],"synonyms":[{"name":"dermoid cyst of the neck","type":"exact"}],"termid":"MONDO:0015379","xrefs":{"Monarch":{"xref_id":"0015379"}}}


id: PR:O94752
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An enhancer of mRNA-decapping protein 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR13612:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer of mRNA-decapping protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18E5.11c","secondary_identifiers":["UniProtKB:O94752"],"synonyms":[{"name":"SPBC18E5.11c","type":"related"},{"name":"Spom972h-EDC3","type":"exact"}],"termid":"PR:O94752"}


id: PBO:0087650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the heterodimeric FACT complex (Spt16p-Pob3p); FACT associates with chromatin via interaction with Nhp6Ap and Nhp6Bp, and reorganizes nucleosomes to facilitate access to DNA by RNA and DNA polymerases; protein abundance increases in response to DNA replication stress","termid":"PBO:0087650"}


id: PR:000050491
data:
  {"annotation_feature_type":"gene","cv_name":"protein","direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"division mal foutue 1 protein (Schizosaccharomyces pombe)","pombase_gene_id":"SPCC4B3.15","termid":"PR:000050491"}


id: GO:1905915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell differentiation involved in phenotypic switching.","definition_xrefs":["GO_REF:0000058","GOC:rph","PMID:25089138","GOC:TermGenie","GOC:BHF_miRNA","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"cell differentiation involved in phenotypic switching","termid":"GO:0090679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell differentiation involved in phenotypic switching","termid":"GO:1905915"}


id: GO:1903081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of C-C chemokine receptor CCR7 signaling pathway.","definition_xrefs":["GOC:rl","PMID:11602640","GO_REF:0000058","GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemokine-mediated signaling pathway","termid":"GO:0070100"},{"relation_name":"is_a","term_name":"regulation of C-C chemokine receptor CCR7 signaling pathway","termid":"GO:1903080"},{"relation_name":"negatively_regulates","term_name":"C-C chemokine receptor CCR7 signaling pathway","termid":"GO:0038118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of C-C chemokine receptor CCR7 signaling pathway","synonyms":[{"name":"down regulation of C-C chemokine receptor CCR7 signaling pathway","type":"exact"},{"name":"down regulation of C-C chemokine receptor CCR7 signalling pathway","type":"exact"},{"name":"down regulation of CCR7 signaling pathway","type":"related"},{"name":"down-regulation of C-C chemokine receptor CCR7 signaling pathway","type":"exact"},{"name":"down-regulation of C-C chemokine receptor CCR7 signalling pathway","type":"exact"},{"name":"down-regulation of CCR7 signaling pathway","type":"related"},{"name":"downregulation of C-C chemokine receptor CCR7 signaling pathway","type":"exact"},{"name":"downregulation of C-C chemokine receptor CCR7 signalling pathway","type":"exact"},{"name":"downregulation of CCR7 signaling pathway","type":"related"},{"name":"inhibition of C-C chemokine receptor CCR7 signaling pathway","type":"narrow"},{"name":"inhibition of C-C chemokine receptor CCR7 signalling pathway","type":"narrow"},{"name":"inhibition of CCR7 signaling pathway","type":"related"},{"name":"negative regulation of C-C chemokine receptor CCR7 signalling pathway","type":"exact"},{"name":"negative regulation of CCR7 signaling pathway","type":"related"}],"termid":"GO:1903081"}


id: GO:0072581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of an N6-(lysyl)-L-lysine residue in a protein, producing protein-N6-(beta-lysyl)-L-lysine ((2S)-2-amino-6-([(2S)-2,6-diaminohexanoyl]amino)hexanoic acid). This modification is observed in, and is probably unique to, translation elongation factor P (EF-P).","definition_xrefs":["PMID:20729861","RESID:AA0531","GOC:jsg","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-N6-(L-lysyl)-L-lysine modification to protein-N6-(beta-lysyl)-L-lysine (obsolete GO:0072581)","termid":"GO:0072581"}


id: GO:0061697
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + N(6)-glutaryl-L-lysyl-[protein] + NAD+ = 2''-O-glutaryl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide.","definition_xrefs":["PMID:24703693","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0003674","GO:0016787","GO:0140096"],"is_obsolete":false,"name":"protein-glutaryllysine deglutarylase activity","secondary_identifiers":["RHEA:47664"],"termid":"GO:0061697"}


id: PBO:0068496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 80, pseudogene","termid":"PBO:0068496"}


id: GO:0044510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of signal transduction in the bitten organism.","definition_xrefs":["GOC:jl","GOC:fj","PMID:8405712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of signal transduction in another organism","termid":"GO:0044509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in positive regulation of signal transduction in another organism","synonyms":[{"name":"envenomation resulting in positive regulation of signal transduction in other organism","type":"exact"}],"termid":"GO:0044510"}


id: PBO:0055350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2779","termid":"PBO:0055350"}


id: PBO:0090218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial phosphatidate cytidylyltransferase Tam41","termid":"PBO:0090218"}


id: FYPO:0007739
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleolar ring disassembly begins later than normal. Nucleolar rings are structures located at the nucleolar periphery where several nuclear factors are reversibly aggregated and sequestered during acute heat stress. They normally disassemble upon removal of heat stress.","definition_xrefs":["PMID:33176152","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component organization during vegetative growth","termid":"FYPO:0001353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of nucleolar ring disassembly","synonyms":[{"name":"delayed nucleolar ring disassembly","type":"exact"},{"name":"delayed nucleolar ring disassembly during recovery from heat shock","type":"exact"},{"name":"delayed onset of NuR disassembly","type":"exact"},{"name":"delayed onset of nucleolar ring disassembly during mitotic cell cycle","type":"related"},{"name":"delayed onset of nucleolar ring disassembly during vegetative growth","type":"exact"}],"termid":"FYPO:0007739"}


id: PBO:0068392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 212B","termid":"PBO:0068392"}


id: PBO:0041264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q binding protein pseudogene 1","termid":"PBO:0041264"}


id: MONDO:0023541
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kasznica-Carlson-Coppedge syndrome","secondary_identifiers":["MESH:C537011","UMLS:C2931393","MEDGEN:444045"],"synonyms":[{"name":"Kasznica Carlson Coppedge syndrome","type":"related"},{"name":"ectrodactyly spina bifida cardiopathy","type":"related"},{"name":"ectrodactyly, retrognathism, abnormal ears, highly arched palate, spina bifida, congenital heart defect, single umbilical artery","type":"related"}],"termid":"MONDO:0023541","xrefs":{"Monarch":{"xref_id":"0023541"}}}


id: MONDO:0016328
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete fatty acid oxidation and ketogenesis disorder with hypertrophic cardiomyopathy (obsolete MONDO:0016328)","secondary_identifiers":["Orphanet:217591"],"termid":"MONDO:0016328","xrefs":{"Monarch":{"xref_id":"0016328"}}}


id: PBO:0080446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-set and immunoglobulin domain containing 4","termid":"PBO:0080446"}


id: PBO:0087230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sedoheptulose bisphosphatase involved in riboneogenesis; dephosphorylates sedoheptulose 1,7-bisphosphate, which is converted via the nonoxidative pentose phosphate pathway to ribose-5-phosphate; facilitates the conversion of glycolytic intermediates to pentose phosphate units; also has fructose 1,6-bisphosphatase activity but this is probably not biologically relevant, since deletion does not affect FBP levels; GFP-fusion protein localizes to the cytoplasm and nucleus","termid":"PBO:0087230"}


id: PBO:0074988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-30","termid":"PBO:0074988"}


id: MONDO:0005557
data:
  {"annotated_genes":["SJAG_02805"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85232],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010926"}]},"cv_name":"mondo","definition":"Disorders in the processing of calcium in the body: its absorption, transport, storage, and utilization.","definition_xrefs":["MESH:D002128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mineral metabolism disease","termid":"MONDO:0000226"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02805":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"calcium metabolic disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:10575","EFO:0005769","UMLS:C0006705","SCTID:71638002","ICD9:275.40","ICD9:275.49","MEDGEN:714","ICD9:275.4"],"synonyms":[{"name":"calcium metabolism disease","type":"related"},{"name":"calcium metabolism disorder","type":"related"},{"name":"disorder of calcium metabolism","type":"exact"}],"termid":"MONDO:0005557","terms_by_termid":{"MONDO:0010926":null},"xrefs":{"Monarch":{"xref_id":"0005557"}}}


id: MONDO:0002472
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma arising in a pre-existing pleomorphic adenoma. It most often occurs in the parotid gland and less often in the submandibular gland and minor salivary gland. Patients usually present with a history of a long-standing mass which recently had undergone rapid growth. The prognosis depends on the invasiveness of the malignant component. Patients with non-invasive or minimally invasive tumors usually have a good prognosis following surgical resection. Invasive tumors are usually aggressive and are associated with recurrences and metastases.","definition_xrefs":["NCIT:C4397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myoepithelial tumor","termid":"MONDO:0002380"},{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"},{"relation_name":"is_a","term_name":"malignant mixed neoplasm","termid":"MONDO:0005853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"carcinoma ex pleomorphic adenoma","secondary_identifiers":["UMLS:C0344460","ICDO:8941/3","MEDGEN:87486"],"synonyms":[{"name":"carcinoma ex pleomorphic adenoma","type":"exact"},{"name":"carcinoma ex pleomorphic adenoma (morphologic abnormality)","type":"exact"},{"name":"carcinoma in pleomorphic adenoma","type":"exact"}],"termid":"MONDO:0002472","xrefs":{"Monarch":{"xref_id":"0002472"}}}


id: GO:1901329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of odontoblast differentiation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation","termid":"GO:0030856"},{"relation_name":"regulates","term_name":"odontoblast differentiation","termid":"GO:0071895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of odontoblast differentiation","termid":"GO:1901329"}


id: MONDO:0009784
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ophthalmoplegic neuromuscular disorder with abnormal mitochondria","secondary_identifiers":["OMIM:258470","MEDGEN:340508","UMLS:C1850302","MESH:C564925"],"synonyms":[{"name":"ophthalmoplegic neuromuscular disorder with abnormal mitochondria","type":"exact"}],"termid":"MONDO:0009784","xrefs":{"Monarch":{"xref_id":"0009784"}}}


id: FYPO:0000568
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mating projection assembly is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component assembly","termid":"FYPO:0000336"},{"relation_name":"is_a","term_name":"abnormal shmoo directionality","termid":"FYPO:0005791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000301","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal shmoo formation","synonyms":[{"name":"abnormal conjugation tube formation","type":"exact"},{"name":"abnormal mating projection assembly","type":"exact"},{"name":"abnormal mating projection formation","type":"exact"},{"name":"abnormal shmoo assembly","type":"exact"},{"name":"shmoo formation: abnormal","type":"related"}],"termid":"FYPO:0000568"}


id: PBO:0057439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 556","termid":"PBO:0057439"}


id: PBO:0078889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon CTG) 2-1","termid":"PBO:0078889"}


id: GO:0060451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of muscle contraction of the hindgut, the posterior part of the alimentary canal, including the rectum, and the large intestine.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hindgut contraction","termid":"GO:0043134"},{"relation_name":"is_a","term_name":"negative regulation of smooth muscle contraction","termid":"GO:0045986"},{"relation_name":"is_a","term_name":"negative regulation of digestive system process","termid":"GO:0060457"},{"relation_name":"negatively_regulates","term_name":"hindgut contraction","termid":"GO:0043133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hindgut contraction","termid":"GO:0060451"}


id: PBO:0028077
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-incomplete_mitotic_sister_chromatid_segregation","termid":"PBO:0028077"}


id: GO:0004108
data:
  {"annotated_genes":["SJAG_01922"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74049],"is_not":false,"summary":null,"term":"GO:0004108"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA, where the acetyl group is added to the si-face of oxaloacetate; acetyl-CoA thus provides the two carbon atoms of the pro-S carboxymethyl group.","definition_xrefs":["EC:2.3.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"citrate synthase activity","termid":"GO:0036440"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01922":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"citrate (Si)-synthase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-70975"],"synonyms":[{"name":"(R)-citric synthase activity","type":"related"},{"name":"acetyl-CoA:oxaloacetate C-acetyltransferase [thioester-hydrolysing, (pro-S)-carboxymethyl forming]","type":"related"},{"name":"citrate condensing enzyme activity","type":"related"},{"name":"citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO(-)->acetyl-CoA) activity","type":"related"},{"name":"citrate oxaloacetate-lyase ((pro-3S)-CH2COO-rightacetyl-CoA)","type":"related"},{"name":"citrate oxaloacetate-lyase [(pro-3S)-CH2COOrightacetyl-CoA]","type":"related"},{"name":"citrate oxaloacetate-lyase, CoA-acetylating activity","type":"related"},{"name":"citrate synthase activity","type":"broad"},{"name":"citrate synthetase activity","type":"related"},{"name":"citric synthase activity","type":"related"},{"name":"citric-condensing enzyme activity","type":"related"},{"name":"citrogenase activity","type":"related"},{"name":"condensing enzyme activity","type":"broad"},{"name":"oxalacetic transacetase activity","type":"related"},{"name":"oxaloacetate transacetase activity","type":"related"}],"termid":"GO:0004108","terms_by_termid":{"GO:0004108":null}}


id: PBO:0012609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome complex subunit alpha 2, Pre8 (predicted)","termid":"PBO:0012609"}


id: MONDO:0018022
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"beta-thalassemia and related diseases","termid":"MONDO:0017145"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"hemoglobin Lepore-beta-thalassemia syndrome","secondary_identifiers":["MEDGEN:1826060","Orphanet:330032","GARD:21505","UMLS:C5679855"],"synonyms":[{"name":"HbLepore-beta-thalassemia syndrome","type":"exact"},{"name":"Lepore-beta-thalassemia syndrome","type":"exact"}],"termid":"MONDO:0018022","xrefs":{"Monarch":{"xref_id":"0018022"}}}


id: GO:1904773
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetrachloromethane stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:7852267"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular response to tetrachloromethane (obsolete GO:1904773)","synonyms":[{"name":"cellular response to CCL4","type":"exact"},{"name":"cellular response to carbon tetrachloride","type":"exact"}],"termid":"GO:1904773"}


id: GO:0097235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of fatty acid beta-oxidation by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:1899286","GOC:dgf"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of fatty acid beta-oxidation by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:0097235)","termid":"GO:0097235"}


id: PBO:0084304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Iron-sulfur protein required for synthesis of wybutosine modified tRNA; wybutosine is a modified guanosine found at 3'-position adjacent to anticodon of phenylalanine tRNA which supports reading frame maintenance by stabilizing codon-anticodon interactions; induction by Yap5p in response to iron provides protection from high iron toxicity; overexpression results in increased cellular iron","termid":"PBO:0084304"}


id: GO:0034323
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a butyl group to an oxygen atom on the acceptor molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"},{"relation_name":"is_a","term_name":"butanoyltransferase activity","termid":"GO:0034326"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016746"],"is_obsolete":false,"name":"O-butanoyltransferase activity","termid":"GO:0034323"}


id: PBO:0034588
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_galactose-specific_flocculation","termid":"PBO:0034588"}


id: GO:0046173
data:
  {"annotated_genes":["SJAG_01057","SJAG_03098","SJAG_01148","SJAG_03275","SJAG_02305","SJAG_03739","SJAG_00880","SJAG_00409","SJAG_04178","SJAG_02321","SJAG_02706","SJAG_02429","SJAG_00244","SJAG_00321","SJAG_03409","SJAG_01012"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106298,93735],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006114"},{"annotations":[65569],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006021"},{"annotations":[70631,74462,70880,93141,75481],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032958"},{"annotations":[73426,78659,76606,96673,109515,105787],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046512"},{"annotations":[69536,108327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006729"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol metabolic process","termid":"GO:0019751"},{"relation_name":"is_a","term_name":"alcohol biosynthetic process","termid":"GO:0046165"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00321":null,"SJAG_00409":null,"SJAG_00880":null,"SJAG_01012":null,"SJAG_01057":null,"SJAG_01148":null,"SJAG_02305":null,"SJAG_02321":null,"SJAG_02429":null,"SJAG_02706":null,"SJAG_03098":null,"SJAG_03275":null,"SJAG_03409":null,"SJAG_03739":null,"SJAG_04178":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"polyol biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"polyhydric alcohol biosynthetic process","type":"exact"},{"name":"polyol anabolism","type":"exact"},{"name":"polyol biosynthesis","type":"exact"},{"name":"polyol formation","type":"exact"},{"name":"polyol synthesis","type":"exact"}],"termid":"GO:0046173","terms_by_termid":{"GO:0006021":null,"GO:0006114":null,"GO:0006729":null,"GO:0032958":null,"GO:0046512":null}}


id: PBO:0004623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartate kinase (predicted)","termid":"PBO:0004623"}


id: GO:0042209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of orcinol (5-methyl-1,3-benzenediol), an aromatic compound derived from the fermentation of lichen and synthesized by some higher plants.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orcinol metabolic process","termid":"GO:0018940"},{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"toluene-containing compound catabolic process","termid":"GO:0072491"},{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"orcinol catabolic process","secondary_identifiers":["UM-BBD_pathwayID:orc"],"synonyms":[{"name":"orcin catabolic process","type":"exact"},{"name":"orcin catabolism","type":"exact"},{"name":"orcinol breakdown","type":"exact"},{"name":"orcinol catabolism","type":"exact"},{"name":"orcinol degradation","type":"exact"}],"termid":"GO:0042209"}


id: MOD:00088
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-palmitoyl-L-threonine.","definition_xrefs":["Unimod:47#T","OMSSA:95","PubMed:6642431","RESID:AA0079","PubMed:8413602"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-palmitoylated residue","termid":"MOD:00652"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"O-palmitoyl-L-threonine","synonyms":[{"name":"(2S,3R)-2-amino-3-(hexadecanoyloxy)butanoic acid","type":"exact"},{"name":"L-threonine hexadecanoate ester","type":"exact"},{"name":"LIPID O-palmitoyl threonine","type":"exact"},{"name":"O-hexadecanoylated L-threonine","type":"exact"},{"name":"O-palmitoyl-L-threonine","type":"exact"},{"name":"O-palmitoylated L-threonine","type":"exact"},{"name":"O3-palmitoyl-threonine","type":"exact"},{"name":"OPamThr","type":"exact"},{"name":"Palmitoyl","type":"related"},{"name":"Palmitoylation","type":"related"},{"name":"palmitoylationt","type":"exact"},{"name":"threonine palmitate ester","type":"exact"}],"termid":"MOD:00088"}


id: PBO:0003150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-AN1 type","termid":"PBO:0003150"}


id: MONDO:0008495
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Platelet storage pool deficiency refers to a group of conditions that are caused by problems with the platelet granules. Platelet granules are tiny storage sacs found within the platelets which release various substances to help stop bleeding. Platelet storage pool deficiencies occur when platelet granules are absent, reduced in number, or unable to empty their contents into the bloodstream. The signs and symptoms include frequent nosebleeds; abnormally heavy or prolonged menstruation ; easy bruising; recurrent anemia ; and abnormal bleeding after surgery, dental work or childbirth. Platelet storage pool deficiencies may be genetic or acquired (non-genetic). They can also be part of an inherited genetic syndrome such as Hermansky-Pudlak syndrome, Chediak-Higashi syndrome, thrombocytopenia-absent radius (TAR) syndrome, and Wiskott-Aldrich syndrome. Treatment is symptomatic.","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic constitutional thrombocytopenia","termid":"MONDO:0018795"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"platelet storage pool deficiency","secondary_identifiers":["UMLS:C0032197","MEDGEN:19351","DOID:2223","EFO:1001112","MESH:D010981","OMIM:185050","Orphanet:734","SCTID:234474009","GARD:5034"],"synonyms":[{"name":"alpha delta granule deficiency","type":"related"},{"name":"alpha dense granule deficiency","type":"exact"},{"name":"combined alpha-delta platelet storage pool deficiency","type":"exact"},{"name":"dense body defect","type":"exact"},{"name":"platelet dense granule deficiency","type":"exact"},{"name":"platelet storage pool defect","type":"exact"},{"name":"platelet storage pool diseases","type":"related"},{"name":"storage pool platelet disease","type":"related"}],"termid":"MONDO:0008495","xrefs":{"Monarch":{"xref_id":"0008495"}}}


id: GO:0080170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which hydrogen peroxide is transported across a membrane.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"hydrogen peroxide transmembrane transport","synonyms":[{"name":"hydrogen peroxide membrane transport","type":"exact"}],"termid":"GO:0080170"}


id: PBO:0004844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar membrane alkaline phosphatase (predicted)","termid":"PBO:0004844"}


id: MONDO:0012529
data:
  {"annotated_genes":["SJAG_02585","SJAG_00468"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85605,85606],"is_not":false,"summary":null,"term":"MONDO:0012529"}]},"cv_name":"mondo","definition":"Any Diamond-Blackfan anemia in which the cause of the disease is a mutation in the RPS24 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Diamond-Blackfan anemia","termid":"MONDO:0015253"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00468":null,"SJAG_02585":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"Diamond-Blackfan anemia 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:387892","GARD:10241","DOID:0111887","MESH:C536355","OMIM:610629","UMLS:C1857719","NCIT:C176912"],"synonyms":[{"name":"DBA3","type":"related"},{"name":"Diamond-Blackfan Anaemia type 3","type":"exact"},{"name":"Diamond-Blackfan Anemia type 3","type":"exact"},{"name":"Diamond-Blackfan anaemia caused by mutation in RPS24","type":"exact"},{"name":"Diamond-Blackfan anemia 3","type":"exact"},{"name":"Diamond-Blackfan anemia caused by mutation in RPS24","type":"exact"},{"name":"RPS24 Diamond-Blackfan anaemia","type":"exact"},{"name":"RPS24 Diamond-Blackfan anemia","type":"exact"},{"name":"anaemia Diamond-Blackfan 3","type":"related"},{"name":"anemia Diamond-Blackfan 3","type":"related"}],"termid":"MONDO:0012529","terms_by_termid":{"MONDO:0012529":null},"xrefs":{"Monarch":{"xref_id":"0012529"}}}


id: FYPO:0000240
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the size, shape, or structure of invasively growing filaments is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"abnormal filament morphology","synonyms":[{"name":"filament morphology aberrant","type":"exact"}],"termid":"FYPO:0000240"}


id: PBO:0090561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase, Sirtuin family, NAD-dependent Sir2","termid":"PBO:0090561"}


id: SO:0000322
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of nucleotide sequence targeted by a nuclease enzyme that is found cleaved more than would be expected by chance.","direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease_sensitive_site","termid":"SO:0000684"},{"relation_name":"is_a","term_name":"accessible_DNA_region","termid":"SO:0002331"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclease_hypersensitive_site","synonyms":[{"name":"nuclease hypersensitive site","type":"exact"}],"termid":"SO:0000322"}


id: MONDO:0044200
data:
  {"annotated_genes":["SJAG_00677"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85655],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014168"}]},"cv_name":"mondo","definition":"T-B+ severe combined immunodeficiency (SCID) is a group of rare monogenic primary immunodeficiency disorders characterized by a lack of functional peripheral T lymphocytes with presence of B lymphocytes, resulting in early-onset severe respiratory viral, bacterial or fungal infections, diarrhea and failure to thrive.","definition_xrefs":["Orphanet:317416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"severe combined immunodeficiency","termid":"MONDO:0015974"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00677":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"T-B+ severe combined immunodeficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:21405","MEDGEN:1842847","UMLS:C5679894"],"synonyms":[{"name":"T-B+ SCID","type":"exact"},{"name":"T-cell negative B-cell positive SCID","type":"exact"}],"termid":"MONDO:0044200","terms_by_termid":{"MONDO:0014168":null},"xrefs":{"Monarch":{"xref_id":"0044200"}}}


id: GO:0035641
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specific movement from place to place of an organism in response to a novel environment.","definition_xrefs":["PMID:17151232","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"locomotory behavior","termid":"GO:0007626"},{"relation_name":"is_a","term_name":"exploration behavior","termid":"GO:0035640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"locomotory exploration behavior","termid":"GO:0035641"}


id: PBO:0051173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-62 (pseudogene)","termid":"PBO:0051173"}


id: PBO:0033786
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_anaphase-promoting_complex-dependent_protein_catabolic_process","termid":"PBO:0033786"}


id: FYPO:0005086
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at small nucleolar RNA (snoRNA) genes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:21151114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin at ncRNA gene","termid":"FYPO:0005083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to chromatin at snoRNA gene","synonyms":[{"name":"normal protein localisation to chromatin at snoRNA gene","type":"exact"},{"name":"normal protein localization to chromatin at snoRNA gene during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin at snoRNA gene during vegetative growth","type":"exact"}],"termid":"FYPO:0005086"}


id: PBO:0053004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laminin subunit gamma 3","termid":"PBO:0053004"}


id: PBO:0026651
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_chromatin_binding_during_cellular_response_to_hydroxyurea","termid":"PBO:0026651"}


id: GO:0035982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A developmental process that arises as an organism progresses toward the end of its lifespan that results in a decline in behavioral activities such as locomotory behavior, and learning or memory.","definition_xrefs":["GOC:kmv","PMID:20523893"],"gene_count":0,"genotype_count":0,"name":"obsolete age-dependent behavioral decline (obsolete GO:0035982)","synonyms":[{"name":"age-dependent behavioural decline","type":"exact"},{"name":"age-related behavioral decline","type":"exact"},{"name":"behavioral aging","type":"exact"}],"termid":"GO:0035982"}


id: PBO:0042839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 44","termid":"PBO:0042839"}


id: PBO:0073213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ssemaphorin 4F","termid":"PBO:0073213"}


id: GO:0048266
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavior","termid":"GO:0007610"},{"relation_name":"part_of","term_name":"response to pain","termid":"GO:0048265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"behavioral response to pain","synonyms":[{"name":"behavioural response to pain","type":"exact"}],"termid":"GO:0048266"}


id: GO:0090667
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a motile cell in response to the presence of vascular endothelial growth factor (VEGF).","definition_xrefs":["GOC:BHF_miRNA","PMID:21885851","GOC:BHF","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell chemotaxis","termid":"GO:0060326"},{"relation_name":"part_of","term_name":"cellular response to vascular endothelial growth factor stimulus","termid":"GO:0035924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell chemotaxis to vascular endothelial growth factor","termid":"GO:0090667"}


id: PBO:0078868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRPM2 antisense RNA","termid":"PBO:0078868"}


id: PBO:0077380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 121","termid":"PBO:0077380"}


id: MONDO:0020858
data:
  {"annotated_genes":["SJAG_03114"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86108],"is_not":false,"summary":null,"term":"MONDO:0020858"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex deficiency","termid":"MONDO:0000066"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03114":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 5 (ATP synthase) deficiency nuclear type 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4748269","MEDGEN:1648429","DOID:0070463","GARD:18670","OMIM:618120"],"synonyms":[{"name":"MC5DN5","type":"exact"},{"name":"MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, NUCLEAR TYPE 5","type":"exact"},{"name":"Mitochondrial Complex 5 (ATP Synthase) Deficiency, ATP5F1D Type","type":"exact"},{"name":"mitochondrial complex v (atp synthase) deficiency","type":"exact"}],"termid":"MONDO:0020858","terms_by_termid":{"MONDO:0020858":null},"xrefs":{"Monarch":{"xref_id":"0020858"}}}


id: PBO:0039249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase 1 family member L2","termid":"PBO:0039249"}


id: PBO:0066347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RCC1 domain containing 1","termid":"PBO:0066347"}


id: PBO:0085194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ornithine decarboxylase; catalyzes the first step in polyamine biosynthesis; degraded in a proteasome-dependent manner in the presence of excess polyamines; deletion decreases lifespan, and increases necrotic cell death and ROS generation","termid":"PBO:0085194"}


id: PBO:0087934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translational elongation factor EF-1 alpha; GTP-bound active form, binds to and delivers aminoacylated tRNA to the A-site of ribosomes for elongation of nascent polypeptides; moonlighting function as an actin binding and bundling protein; association with GTPase Rho1p on the vacuolar membrane may facilitate F-actin remodeling; involved in tRNA re-export from the nucleus","termid":"PBO:0087934"}


id: GO:0070468
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release by odontoblasts of the extracellular matrix constituents, including collagen, that form the basis of dentin.","definition_xrefs":["PMID:12856968","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix constituent secretion","termid":"GO:0070278"},{"relation_name":"part_of","term_name":"odontogenesis of dentin-containing tooth","termid":"GO:0042475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"dentin extracellular matrix secretion","synonyms":[{"name":"dentin secretion","type":"related"},{"name":"dentine secretion","type":"related"},{"name":"predentin secretion","type":"related"}],"termid":"GO:0070468"}


id: GO:0018000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The acetylation of the N-terminal tyrosine of proteins to form the derivative N-acetyl-L-tyrosine.","definition_xrefs":["RESID:AA0053"],"gene_count":0,"genotype_count":0,"name":"obsolete N-terminal peptidyl-tyrosine acetylation (obsolete GO:0018000)","termid":"GO:0018000"}


id: MONDO:0012644
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Jeune syndrome in which the cause of the disease is a mutation in the IFT80 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Jeune syndrome","termid":"MONDO:0018770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"asphyxiating thoracic dystrophy 2","secondary_identifiers":["UMLS:C1970005","OMIM:611263","MESH:C566982","DOID:0110086","GARD:15511","MEDGEN:370804"],"synonyms":[{"name":"ATD2","type":"exact"},{"name":"IFT80 Jeune syndrome","type":"exact"},{"name":"Jeune syndrome caused by mutation in IFT80","type":"exact"},{"name":"SRTD2","type":"exact"},{"name":"asphyxiating thoracic dystrophy 2","type":"exact"},{"name":"asphyxiating thoracic dystrophy type 2","type":"exact"},{"name":"short-rib thoracic dysplasia 2 with or without polydactyly","type":"exact"}],"termid":"MONDO:0012644","xrefs":{"Monarch":{"xref_id":"0012644"}}}


id: PBO:0090757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthamide synthetase Dph6","termid":"PBO:0090757"}


id: PBO:0045988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EI24 pseudogene 2","termid":"PBO:0045988"}


id: PBO:0036485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine specific carbamoyl-phosphate synthase subunit Arg5","termid":"PBO:0036485"}


id: MONDO:0015862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete embryonal carcinoma (obsolete MONDO:0015862)","termid":"MONDO:0015862","xrefs":{"Monarch":{"xref_id":"0015862"}}}


id: PBO:0028630
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_U6_2'-O-snRNA_methylation_at_residue_A41","termid":"PBO:0028630"}


id: MONDO:0001135
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by recurrent sexual urges, fantasies, or behaviors involving observing an unsuspecting person who is naked, disrobing, or engaging in sexual activity.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paraphilic disorder","termid":"MONDO:0000596"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"voyeurism","secondary_identifiers":["ICD10CM:F65.3","MESH:D014843","UMLS:C0042979","SCTID:63835008","ICD9:302.82","MEDGEN:12126","NCIT:C94360","DOID:10834"],"termid":"MONDO:0001135","xrefs":{"Monarch":{"xref_id":"0001135"}}}


id: MONDO:0002058
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, well circumscribed neoplasm that arises from the breast. Representative examples include apocrine adenoma, tubular adenoma, and pleomorphic adenoma.","definition_xrefs":["NCIT:C40382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast benign neoplasm","termid":"MONDO:0000620"},{"relation_name":"is_a","term_name":"adenoma","termid":"MONDO:0004972"},{"relation_name":"is_a","term_name":"benign epithelial neoplasm","termid":"MONDO:0036976"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast adenoma","secondary_identifiers":["UMLS:C1328385","DOID:1625","MEDGEN:231286"],"synonyms":[{"name":"Ademoma - breast","type":"exact"},{"name":"breast adenoma","type":"exact"}],"termid":"MONDO:0002058","xrefs":{"Monarch":{"xref_id":"0002058"}}}


id: MONDO:0010733
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spastic paraplegia type 2 (SPG2) is an X-linked leukodystrophy characterized primarily by spastic gait and autonomic dysfunction. When additional central nervous system (CNS) signs, such as intellectual deficit, ataxia, or extrapyramidal signs, are present, the syndrome is referred to as complicated SPG.","definition_xrefs":["Orphanet:99015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"},{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 2","secondary_identifiers":["OMIM:312920","UMLS:C1839264","DOID:0110773","SCTID:723622007","MEDGEN:374177","GARD:4923"],"synonyms":[{"name":"PLP1 hereditary spastic paraplegia","type":"exact"},{"name":"SPG2","type":"exact"},{"name":"Sppx2","type":"related"},{"name":"X-linked spastic paraplegia 2","type":"exact"},{"name":"X-linked spastic paraplegia type 2","type":"exact"},{"name":"hereditary spastic paraplegia caused by mutation in PLP1","type":"exact"},{"name":"hereditary spastic paraplegia type 2","type":"exact"},{"name":"spastic gait type 2","type":"exact"},{"name":"spastic paraparesis type 2","type":"exact"},{"name":"spastic paraplegia 2","type":"related"},{"name":"spastic paraplegia 2, X-linked","type":"related"},{"name":"spastic paraplegia 2, X-linked, X-linked recessive","type":"exact"},{"name":"spastic paraplegia type 2","type":"exact"}],"termid":"MONDO:0010733","xrefs":{"Monarch":{"xref_id":"0010733"}}}


id: PBO:0058040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4261","termid":"PBO:0058040"}


id: GO:1990228
data:
  {"annotated_genes":["SJAG_01063","SJAG_00186","SJAG_00894","SJAG_01238","SJAG_01302","SJAG_00532","SJAG_03862","SJAG_03932","SJAG_04397"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[105657,77153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002144"},{"annotations":[109479,98043,106676,92714,102893,113673,92944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099128"}]},"cv_name":"cellular_component","definition":"A protein complex capable of catalyzing the transfer of sulfur atoms from one compound (donor) to another (acceptor).","definition_xrefs":["PMID:17350958","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00186":null,"SJAG_00532":null,"SJAG_00894":null,"SJAG_01063":null,"SJAG_01238":null,"SJAG_01302":null,"SJAG_03862":null,"SJAG_03932":null,"SJAG_04397":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005737","GO:0005829","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"sulfurtransferase complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"SufE complex","type":"narrow"},{"name":"SufE dimer","type":"narrow"},{"name":"ThiF-ThiS complex","type":"related"},{"name":"sulfur transfer complex","type":"exact"}],"termid":"GO:1990228","terms_by_termid":{"GO:0002144":null,"GO:0099128":null}}


id: PBO:0074905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 77","termid":"PBO:0074905"}


id: PBO:0060111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 12","termid":"PBO:0060111"}


id: GO:0018644
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: toluene + H+ + NADH + O2 = 2-hydroxytoluene + H2O + NAD+.","definition_xrefs":["RHEA:20349"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"toluene 2-monooxygenase activity","secondary_identifiers":["MetaCyc:TOLUENE-2-MONOOXYGENASE-RXN","EC:1.14.13.243","UM-BBD_enzymeID:r0260"],"termid":"GO:0018644"}


id: MONDO:0018720
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete common cystic lymphatic malformation (obsolete MONDO:0018720)","secondary_identifiers":["Orphanet:458833"],"termid":"MONDO:0018720","xrefs":{"Monarch":{"xref_id":"0018720"}}}


id: PBO:0089459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP-associated protein, WD repeat protein Sap130","termid":"PBO:0089459"}


id: PBO:0074064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC25A39 pseudogene 2","termid":"PBO:0074064"}


id: GO:0061184
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the progression of the dermatome over time, from its initial formation to the mature structure. The dermatome is the portion of a somite that will form skin.","definition_xrefs":["GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of embryonic development","termid":"GO:0040019"},{"relation_name":"is_a","term_name":"regulation of dermatome development","termid":"GO:0061183"},{"relation_name":"positively_regulates","term_name":"dermatome development","termid":"GO:0061054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dermatome development","termid":"GO:0061184"}


id: MONDO:0017747
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of protein O-glycosylation","termid":"MONDO:0017741"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0024322"],"is_obsolete":false,"name":"disorder of fucoglycosan synthesis","secondary_identifiers":["UMLS:C5681046","GARD:21341","MEDGEN:1843205","Orphanet:309505"],"termid":"MONDO:0017747","xrefs":{"Monarch":{"xref_id":"0017747"}}}


id: GO:0001824
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm. The blastula follows the morula and precedes the gastrula in the developmental sequence.","definition_xrefs":["ISBN:0198542771","GOC:dph","ISBN:0124020607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"in utero embryonic development","termid":"GO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"blastocyst development","synonyms":[{"name":"blastula development","type":"related"}],"termid":"GO:0001824"}


id: MONDO:1012449
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"squamous cell carcinoma of the digit, non-human animal","termid":"MONDO:1011822"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"squamous cell carcinoma of the digit, dog","secondary_identifiers":["OMIA:001787-9615"],"termid":"MONDO:1012449","xrefs":{"Monarch":{"xref_id":"1012449"}}}


id: GO:0170010
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A highly conserved protein complex that recognises and elicits the rapid degradation of mRNAs in which an amino-acid codon has changed to a nonsense codon; occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction.","definition_xrefs":["PMID:1569946","PMID:9032286","PMID:29282598","GOC:lnp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"nonsense-mediated decay complex","secondary_identifiers":["IntAct:EBI-16420380"],"synonyms":[{"name":"Upf complex","type":"exact"}],"termid":"GO:0170010"}


id: PBO:0057626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1200","termid":"PBO:0057626"}


id: PR:Q09928
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peptidyl-prolyl cis-trans isomerase-like 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-prolyl cis-trans isomerase cyp8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC21E11.05c","secondary_identifiers":["UniProtKB:Q09928"],"synonyms":[{"name":"PPIase cyp8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PPIL2","type":"exact"},{"name":"rotamase cyp8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09928"}


id: PBO:0001631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonine aspartase (predicted)","termid":"PBO:0001631"}


id: PBO:0047947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(16)(q23.2)","termid":"PBO:0047947"}


id: PBO:0085162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleotide pyrophosphatase/phosphodiesterase; mediates extracellular nucleotide phosphate hydrolysis along with Npp1p and Pho5p; activity and expression enhanced during conditions of phosphate starvation; involved in spore wall assembly; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum; NPP2 has a paralog, NPP1, that arose from the whole genome duplication; npp1 npp2 double mutant exhibits reduced dityrosine fluorescence relative to single mutants","termid":"PBO:0085162"}


id: PBO:0047670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folliculin","termid":"PBO:0047670"}


id: GO:0009274
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protective structure outside the cytoplasmic membrane composed of peptidoglycan (also known as murein), a molecule made up of a glycan (sugar) backbone of repetitively alternating N-acetylglucosamine and N-acetylmuramic acid with short, attached, cross-linked peptide chains containing unusual amino acids. An example of this component is found in Escherichia coli.","definition_xrefs":["ISBN:0815108893","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall","termid":"GO:0005618"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005618"}],"interesting_parent_ids":["GO:0005575","GO:0005618"],"is_obsolete":false,"name":"peptidoglycan-based cell wall","synonyms":[{"name":"envelope","type":"broad"},{"name":"murein sacculus","type":"related"},{"name":"peptidoglycan","type":"narrow"}],"termid":"GO:0009274"}


id: MONDO:0010842
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mucocutaneous venous malformations (VMCMs) are hereditary vascular malformations characterized by the presence of small, multifocal, bluish-purple venous lesions involving the skin and mucosa.","definition_xrefs":["Orphanet:2451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"multiple cutaneous and mucosal venous malformations","secondary_identifiers":["GARD:16600","MEDGEN:325026","MESH:C563977","SCTID:699301008","OMIM:600195","UMLS:C1838437","DOID:0050792"],"synonyms":[{"name":"VENOUS malformations, multiple cutaneous and mucosal","type":"related"},{"name":"VMCM","type":"exact"},{"name":"Vmcm1","type":"related"},{"name":"cutaneous and mucosal venous malformation","type":"exact"},{"name":"mucocutaneous venous malformations","type":"related"}],"termid":"MONDO:0010842","xrefs":{"Monarch":{"xref_id":"0010842"}}}


id: GO:0002558
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An inflammatory response driven by antigen recognition by antibodies bound to Fc receptors on mast cells, occurring within minutes after exposure of a sensitized individual to the antigen, and leading to the release of a variety of inflammatory mediators such as histamines.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mast cell mediated immunity","termid":"GO:0002448"},{"relation_name":"is_a","term_name":"type I hypersensitivity","termid":"GO:0016068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"type I hypersensitivity mediated by mast cells","termid":"GO:0002558"}


id: MOD:01416
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-isoleucine residue to a dihydroxylated isoleucine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dihydroxylated residue","termid":"MOD:00428"},{"relation_name":"is_a","term_name":"hydroxylated isoleucine","termid":"MOD:01414"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroxylated isoleucine","synonyms":[{"name":"Hy2Ile","type":"exact"}],"termid":"MOD:01416"}


id: MONDO:0016154
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete qualitative or quantitative defects of myotubularin (obsolete MONDO:0016154)","secondary_identifiers":["Orphanet:207110"],"termid":"MONDO:0016154","xrefs":{"Monarch":{"xref_id":"0016154"}}}


id: PBO:0089297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI-remodelling mannose-ethanolamine phosphate phosphodiesterase Ted1","termid":"PBO:0089297"}


id: PBO:0076110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 17","termid":"PBO:0076110"}


id: GO:0045060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of elimination of immature T cells in the thymus which react strongly with self-antigens.","definition_xrefs":["ISBN:0781735149","PMID:12414722"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative T cell selection","termid":"GO:0043383"},{"relation_name":"is_a","term_name":"thymic T cell selection","termid":"GO:0045061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative thymic T cell selection","synonyms":[{"name":"negative thymic T lymphocyte selection","type":"exact"},{"name":"negative thymic T-cell selection","type":"exact"},{"name":"negative thymic T-lymphocyte selection","type":"exact"}],"termid":"GO:0045060"}


id: PBO:0088539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, inorganic phosphate/copper","termid":"PBO:0088539"}


id: GO:0075504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Induction of macropinosome membrane permeabilization triggered by an interaction between the host membrane and a membrane-penetration protein associated with the capsid. Occurs after internalization of the virus in a macropinosome, and results in release of the viral contents from the macropinosome into the host cell cytoplasm.","definition_xrefs":["GOC:jl","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"permeabilization of host organelle membrane involved in viral entry into host cell","termid":"GO:0039665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macropinosomal membrane permeabilization involved in viral entry into host cell","synonyms":[{"name":"viral entry into host cell via macropinocytosis followed by macropinosomal membrane permeabilization","type":"related"}],"termid":"GO:0075504"}


id: MONDO:0958356
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"central precocious puberty in male","termid":"MONDO:0958270"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary central precocious puberty in male","secondary_identifiers":["Orphanet:650087","MEDGEN:1853130","UMLS:C5816763"],"termid":"MONDO:0958356","xrefs":{"Monarch":{"xref_id":"0958356"}}}


id: GO:0062152
data:
  {"annotated_genes":["SJAG_00325","SJAG_02099"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90212,93686],"is_not":false,"summary":null,"term":"GO:0062152"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a cytidine in mRNA + S-adenosyl-L-methionine = a 5-methylcytidine in mRNA + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:61464","PMID:22395603","PMID:23871666"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA methyltransferase activity","termid":"GO:0008174"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00325":null,"SJAG_02099":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140098","GO:0016740","GO:0003674","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"mRNA (cytidine-5-)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mRNA (cytosine-5-)-methyltransferase activity","type":"exact"}],"termid":"GO:0062152","terms_by_termid":{"GO:0062152":null}}


id: PBO:0068676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 57, pseudogene","termid":"PBO:0068676"}


id: PBO:0050705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family B (small) member 2","termid":"PBO:0050705"}


id: PBO:0063798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline, histidine and glycine rich 1","termid":"PBO:0063798"}


id: PBO:0036527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH domain RNA binding protein, vigilin (predicted)","termid":"PBO:0036527"}


id: PBO:0071766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 13","termid":"PBO:0071766"}


id: PBO:0028013
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_microtubule_cytoskeleton","termid":"PBO:0028013"}


id: MONDO:0006589
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Contact dermatitis associated with allergens or irritants found in the workplace.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"contact dermatitis","termid":"MONDO:0005480"},{"relation_name":"is_a","term_name":"occupational disorder","termid":"MONDO:0100366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"occupational dermatitis","secondary_identifiers":["ICD9:692.9","SCTID:402587003","EFO:1000744","MEDGEN:14449","MESH:D009783","UMLS:C0028796","DOID:4404","NCIT:C34859"],"synonyms":[{"name":"occupational allergic contact dermatitis","type":"exact"},{"name":"occupational dermatitis","type":"exact"},{"name":"occupational eczema","type":"exact"},{"name":"occupational eczema (disorder) [ambiguous]","type":"exact"}],"termid":"MONDO:0006589","xrefs":{"Monarch":{"xref_id":"0006589"}}}


id: GO:1905064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of vascular smooth muscle cell differentiation.","definition_xrefs":["PMID:19088079","GO_REF:0000058","GOC:TermGenie","GOC:BHF","GOC:BHF_miRNA","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of smooth muscle cell differentiation","termid":"GO:0051151"},{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle cell differentiation","termid":"GO:1905063"},{"relation_name":"negatively_regulates","term_name":"vascular associated smooth muscle cell differentiation","termid":"GO:0035886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of vascular associated smooth muscle cell differentiation","synonyms":[{"name":"down regulation of VSMC differentiation","type":"exact"},{"name":"down regulation of vascular associated smooth muscle cell differentiation","type":"exact"},{"name":"down regulation of vascular smooth muscle cell differentiation","type":"exact"},{"name":"down-regulation of VSMC differentiation","type":"exact"},{"name":"down-regulation of vascular associated smooth muscle cell differentiation","type":"exact"},{"name":"down-regulation of vascular smooth muscle cell differentiation","type":"exact"},{"name":"downregulation of VSMC differentiation","type":"exact"},{"name":"downregulation of vascular associated smooth muscle cell differentiation","type":"exact"},{"name":"downregulation of vascular smooth muscle cell differentiation","type":"exact"},{"name":"inhibition of VSMC differentiation","type":"narrow"},{"name":"inhibition of vascular associated smooth muscle cell differentiation","type":"narrow"},{"name":"inhibition of vascular smooth muscle cell differentiation","type":"narrow"},{"name":"negative regulation of VSMC differentiation","type":"exact"},{"name":"negative regulation of vascular smooth muscle cell differentiation","type":"exact"}],"termid":"GO:1905064"}


id: PBO:0029996
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-small_P-bodies_during_glucose_starvation","termid":"PBO:0029996"}


id: GO:0031669
data:
  {"annotated_genes":["SJAG_03309","SJAG_00534","SJAG_00845","SJAG_02026","SJAG_00233","SJAG_02699","SJAG_00169","SJAG_04743","SJAG_03371","SJAG_00209","SJAG_03256","SJAG_01184","SJAG_01162","SJAG_00256","SJAG_02424","SJAG_02878","SJAG_02474","SJAG_04873","SJAG_01509","SJAG_02973","SJAG_00457","SJAG_01885","SJAG_01970","SJAG_04031","SJAG_04677","SJAG_03602","SJAG_02380","SJAG_01245","SJAG_03486","SJAG_04032","SJAG_00380","SJAG_04725","SJAG_03048","SJAG_04067","SJAG_00781","SJAG_03519","SJAG_02785"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71277,73271,73756,94981,71904,75600,94438],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034198"},{"annotations":[98212,69730,75716,100225,116290,75710],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042149"},{"annotations":[77257,103573,93870,100271,93862],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010106"},{"annotations":[105022],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036245"},{"annotations":[71819,107376,113142,113143],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016036"},{"annotations":[94387,80187,78097,71311,76924,72179,76152,74448],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009267"},{"annotations":[115393],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031142"},{"annotations":[103619],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1901481"},{"annotations":[103622,102589],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1901482"},{"annotations":[87595,101173],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905287"},{"annotations":[102176],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1904547"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nutrient levels","termid":"GO:0031667"},{"relation_name":"is_a","term_name":"cellular response to stimulus","termid":"GO:0051716"}],"gene_count":37,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00209":null,"SJAG_00233":null,"SJAG_00256":null,"SJAG_00380":null,"SJAG_00457":null,"SJAG_00534":null,"SJAG_00781":null,"SJAG_00845":null,"SJAG_01162":null,"SJAG_01184":null,"SJAG_01245":null,"SJAG_01509":null,"SJAG_01885":null,"SJAG_01970":null,"SJAG_02026":null,"SJAG_02380":null,"SJAG_02424":null,"SJAG_02474":null,"SJAG_02699":null,"SJAG_02785":null,"SJAG_02878":null,"SJAG_02973":null,"SJAG_03048":null,"SJAG_03256":null,"SJAG_03309":null,"SJAG_03371":null,"SJAG_03486":null,"SJAG_03519":null,"SJAG_03602":null,"SJAG_04031":null,"SJAG_04032":null,"SJAG_04067":null,"SJAG_04677":null,"SJAG_04725":null,"SJAG_04743":null,"SJAG_04873":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to nutrient levels","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0031669","terms_by_termid":{"GO:0009267":null,"GO:0010106":null,"GO:0016036":null,"GO:0031142":null,"GO:0034198":null,"GO:0036245":null,"GO:0042149":null,"GO:1901481":null,"GO:1901482":null,"GO:1904547":null,"GO:1905287":null}}


id: PATO:0000150
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphology","termid":"PATO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"texture","termid":"PATO:0000150"}


id: PR:Q9USG6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl35a gene.","definition_xrefs":["UniProtKB:Q9USG6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L33-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCP31B10.08c","synonyms":[{"name":"L37B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpl35a","type":"exact"}],"termid":"PR:Q9USG6"}


id: MONDO:0015340
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"DRESS syndrome (Drug Rash with Eosinophilia and Systemic Symptoms) is a hypersensitivity reaction characterized by a generalized skin rash, fever, eosinophilia, lymphocytosis and visceral involvement (hepatitis, nephritis, pneumonitis, pericarditis and myocarditis) and, in some patients, reactivation of human herpes virus 6.","definition_xrefs":["Orphanet:139402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"urticaria","termid":"MONDO:0005492"},{"relation_name":"is_a","term_name":"severe cutaneous adverse reaction","termid":"MONDO:0005594"},{"relation_name":"is_a","term_name":"toxic dermatosis","termid":"MONDO:0017396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"drug rash with eosinophilia and systemic symptoms","secondary_identifiers":["GARD:13629","MedDRA:10058919","SCTID:702809001","MEDGEN:762193","MESH:D063926","UMLS:C3541994","icd11.foundation:516577496","NCIT:C112208"],"synonyms":[{"name":"DHS","type":"exact"},{"name":"DRESS","type":"exact"},{"name":"DRESS syndrome","type":"exact"},{"name":"Drug hypersensitivity syndrome","type":"exact"},{"name":"Drug reaction with eosinophilia and Systemic symptoms","type":"exact"},{"name":"dress","type":"exact"},{"name":"drug reaction eosinophilic systemic syndrome","type":"exact"}],"termid":"MONDO:0015340","xrefs":{"Monarch":{"xref_id":"0015340"}}}


id: MONDO:0800139
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-severe combined immunodeficiency caused by a loss-of-function variation in the IKZF2 gene that is characterized by recurrent upper respiratory infections, thrush and mucosal ulcers, and chronic lymphadenopathy.","definition_xrefs":["PMID:34920454","PMID:3482625","PMID:34826260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"HELIOS deficiency","termid":"MONDO:0800139","xrefs":{"Monarch":{"xref_id":"0800139"}}}


id: PBO:0044798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin alpha 11, pseudogene","termid":"PBO:0044798"}


id: MONDO:0009196
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare deafness characterized by the association of bilateral sensorineural hearing loss and white hair with scattered black tufts, as well as skin areas of hyper- and hypopigmentation. Additional reported features include global developmental delay and moderate intellectual disability, growth retardation, microcephaly, hypotonia, mild dysmorphic facial features (deeply set eyes, broad nasal bridge, slight bowing of the upper lip), retinal depigmentation, anomalies of the fingers and toes, and white matter abnormalities on brain imaging.","definition_xrefs":["Orphanet:999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ermine phenotype","secondary_identifiers":["ICD10CM:E70.3","icd11.foundation:2048725507","MESH:C562663","GARD:407","SCTID:10170007","ICD9:270.2","OMIM:227010","MESH:C535508","UMLS:C1856899","MEDGEN:346466"],"synonyms":[{"name":"BADS","type":"related"},{"name":"BADS syndrome","type":"related"},{"name":"O'Doherty syndrome","type":"exact"},{"name":"black locks with albinism and deafness syndrome","type":"related"},{"name":"black locks, oculocutaneous albinism, and deafness of the sensorineural type","type":"related"},{"name":"ermine phenotype","type":"exact"},{"name":"pigmentary disorder with hearing loss","type":"exact"}],"termid":"MONDO:0009196","xrefs":{"Monarch":{"xref_id":"0009196"}}}


id: PBO:0039947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AT-rich interaction domain 5B","termid":"PBO:0039947"}


id: FYPO:0003322
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of succinate dehydrogenase (ubiquinone) activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001985","FYPO:0000652","FYPO:0000661","FYPO:0000707"],"is_obsolete":false,"name":"abnormal succinate dehydrogenase (ubiquinone) activity","termid":"FYPO:0003322"}


id: MONDO:0010205
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Wolman disease with hypolipoproteinemia and acanthocytosis (obsolete MONDO:0010205)","termid":"MONDO:0010205","xrefs":{"Monarch":{"xref_id":"0010205"}}}


id: GO:0044851
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cyclical periods of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair; one of the collection or mass of filaments growing from the skin of an animal, and forming a covering for a part of the head or for any part or the whole of the body.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological phase","termid":"GO:0044848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hair cycle phase","termid":"GO:0044851"}


id: GO:0019081
data:
  {"annotated_genes":["SJAG_04546"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65350],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0075523"}]},"cv_name":"biological_process","definition":"A process by which viral mRNA is translated into viral protein, using the host cellular machinery.","definition_xrefs":["GOC:bf","GOC:jl","ISBN:0781702534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral gene expression","termid":"GO:0019080"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04546":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral translation","references_by_uniquename":{"GO_REF:0000043":null},"secondary_identifiers":["Reactome:R-HSA-9683701","Reactome:R-HSA-9727281","Reactome:R-HSA-9694635"],"synonyms":[{"name":"viral protein anabolism","type":"exact"},{"name":"viral protein biosynthesis","type":"exact"},{"name":"viral protein biosynthetic process","type":"exact"},{"name":"viral protein formation","type":"exact"},{"name":"viral protein synthesis","type":"exact"}],"termid":"GO:0019081","terms_by_termid":{"GO:0075523":null}}


id: SO:0001879
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant, caused by an alteration of the genomic sequence, where the deletion, is greater than the extent of the underlying genomic features.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural_variant","termid":"SO:0001537"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feature_ablation","synonyms":[{"name":"feature ablation","type":"exact"}],"termid":"SO:0001879"}


id: MONDO:0022057
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A slow growing, locally invasive neoplasm arising from tooth-forming tissues. It most often grows intraosseously in the mandible and less frequently in the maxilla. In a minority of cases it grows extraosseously in the gingiva. It is characterized by the presence of a fibrous stroma, epithelial cells with abundant eosinophilic cytoplasm, and amyloid material which is often calcified. Small tumors may be successfully treated with enucleation. Local resection is usually required for larger tumors. Recurrences have been reported in a minority of cases.","definition_xrefs":["NCIT:C54301"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin neoplasm","termid":"MONDO:0002531"},{"relation_name":"is_a","term_name":"odontogenic neoplasm","termid":"MONDO:0021192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"calcifying epithelial odontogenic tumor","secondary_identifiers":["MEDGEN:87266","ICDO:9340/0","MESH:C537961","UMLS:C0334574"],"synonyms":[{"name":"CEOT","type":"related"},{"name":"Pindborg tumor","type":"exact"},{"name":"Pindborg tumour","type":"exact"},{"name":"calcifying epithelial odontogenic tumor","type":"exact"}],"termid":"MONDO:0022057","xrefs":{"Monarch":{"xref_id":"0022057"}}}


id: GO:2000836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of androgen secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of steroid hormone secretion","termid":"GO:2000833"},{"relation_name":"is_a","term_name":"regulation of androgen secretion","termid":"GO:2000834"},{"relation_name":"positively_regulates","term_name":"androgen secretion","termid":"GO:0035935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of androgen secretion","termid":"GO:2000836"}


id: MONDO:1011853
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurological syndrome, non-human animal","secondary_identifiers":["OMIA:000720"],"termid":"MONDO:1011853","xrefs":{"Monarch":{"xref_id":"1011853"}}}


id: PBO:0049810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase 3","termid":"PBO:0049810"}


id: PBO:0063390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDCD6-AHRR readthrough (NMD candidate)","termid":"PBO:0063390"}


id: CHEBI:338412
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anisomycin","termid":"CHEBI:338412"}


id: PR:Q09873
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wdr21 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat-containing protein 21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12G12.10","synonyms":[{"name":"Spom972h-wdr21","type":"exact"}],"termid":"PR:Q09873"}


id: FYPO:0003414
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell septum is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cell division site","termid":"FYPO:0002442"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000138","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to septum","synonyms":[{"name":"normal protein localisation to septum","type":"exact"},{"name":"normal protein localization to cell septum","type":"exact"},{"name":"normal protein localization to division septum","type":"exact"},{"name":"normal protein localization to septum during mitotic cell cycle","type":"related"},{"name":"normal protein localization to septum during vegetative growth","type":"exact"}],"termid":"FYPO:0003414"}


id: PBO:0078638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyroid hormone receptor interactor 12","termid":"PBO:0078638"}


id: MONDO:0018081
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hemorrhagic fever with renal syndrome (HFRS) is a rodent-borne potentially severe hemorrhagic disease caused by Old World Hantaviruses characterized by high fever, malaise, headache, myalgia, arthralgia, backache, abdominal pain, oliguria/renal failure and systemic hemorrhagic manifestations.","definition_xrefs":["Orphanet:340"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral hemorrhagic fever","termid":"MONDO:0018087"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemorrhagic fever-renal syndrome","secondary_identifiers":["MESH:C535630","ICD10EXP:N08.0*","MEDGEN:42408","GARD:18689","UMLS:C0019101","ICD10EXP:A98.5+","MedDRA:10023484","icd11.foundation:1059069619"],"synonyms":[{"name":"Hantavirosis","type":"exact"},{"name":"Hantavirus fever","type":"exact"}],"termid":"MONDO:0018081","xrefs":{"Monarch":{"xref_id":"0018081"}}}


id: MONDO:0013844
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"stutter disorder","termid":"MONDO:0000723"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stuttering, familial persistent, 4","secondary_identifiers":["MEDGEN:766317","OMIM:614668","UMLS:C3553403"],"synonyms":[{"name":"STUT4","type":"exact"},{"name":"stuttering, familial persistent, 4","type":"exact"}],"termid":"MONDO:0013844","xrefs":{"Monarch":{"xref_id":"0013844"}}}


id: PBO:0065595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 11","termid":"PBO:0065595"}


id: PBO:0029651
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mislocalized_nucleus","termid":"PBO:0029651"}


id: GO:0043230
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Organized structure of distinctive morphology and function, occurring outside the cell. Includes, for example, extracellular membrane vesicles (EMVs) and the cellulosomes of anaerobic bacteria and fungi.","definition_xrefs":["PMID:9914479","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle","termid":"GO:0043226"},{"relation_name":"part_of","term_name":"extracellular region","termid":"GO:0005576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005575","GO:0005576"],"is_obsolete":false,"name":"extracellular organelle","termid":"GO:0043230"}


id: PBO:0075798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SS18L1 subunit of BAF chromatin remodeling complex","termid":"PBO:0075798"}


id: GO:0021530
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into an oligodendrocyte in an environment that is neutral with respect to the developmental pathway.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:jid","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligodendrocyte cell fate specification","termid":"GO:0021778"},{"relation_name":"part_of","term_name":"spinal cord oligodendrocyte cell differentiation","termid":"GO:0021529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spinal cord oligodendrocyte cell fate specification","termid":"GO:0021530"}


id: GO:0030130
data:
  {"annotated_genes":["SJAG_04609","SJAG_04565","SJAG_01809","SJAG_04517","SJAG_02282","SJAG_00379"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[58434,65172],"is_not":false,"summary":null,"term":"GO:0030130"},{"annotations":[77525,61895,112581,112797],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030121"}]},"cv_name":"cellular_component","definition":"A clathrin coat found on a vesicle of the trans-Golgi network.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin vesicle coat","termid":"GO:0030125"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"},{"relation_name":"part_of","term_name":"trans-Golgi network transport vesicle membrane","termid":"GO:0012510"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00379":null,"SJAG_01809":null,"SJAG_02282":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04609":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005794"}],"interesting_parent_ids":["GO:0031410","GO:0032991","GO:0005737","GO:0005575","GO:0005794"],"is_obsolete":false,"name":"clathrin coat of trans-Golgi network vesicle","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"clathrin coat of TGN vesicle","type":"exact"}],"termid":"GO:0030130","terms_by_termid":{"GO:0030121":null,"GO:0030130":null}}


id: PBO:0051313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR2-9 (pseudogene)","termid":"PBO:0051313"}


id: MONDO:0010214
data:
  {"annotated_genes":["SJAG_04791"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86380],"is_not":false,"summary":null,"term":"MONDO:0010214"}]},"cv_name":"mondo","definition":"Xeroderma pigmentosum variant is a milder subtype of xeroderma pigmentosum (XP), a rare genetic photodermatosis characterized by severe sun sensitivity and an increased risk of skin cancer.","definition_xrefs":["Orphanet:90342"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xeroderma pigmentosum","termid":"MONDO:0019600"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04791":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0021190"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005093","MONDO:0021190"],"is_obsolete":false,"name":"xeroderma pigmentosum variant type","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C536766","MEDGEN:376352","DOID:0110847","GARD:5630","OMIM:278750","NCIT:C141367","UMLS:C1848410"],"synonyms":[{"name":"XPV","type":"exact"},{"name":"photosensitivity with defective DNA synthesis","type":"exact"},{"name":"xeroderma pigmentosum variant","type":"related"},{"name":"xeroderma pigmentosum variant type","type":"exact"},{"name":"xeroderma pigmentosum with normal DNA repair rates","type":"exact"},{"name":"xeroderma pigmentosum, variant type","type":"related"}],"termid":"MONDO:0010214","terms_by_termid":{"MONDO:0010214":null},"xrefs":{"Monarch":{"xref_id":"0010214"}}}


id: PBO:0045056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deleted in lymphocytic leukemia 7","termid":"PBO:0045056"}


id: PBO:0059538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded transcription factor binding site X","termid":"PBO:0059538"}


id: PBO:0071759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 6","termid":"PBO:0071759"}


id: PBO:0066524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RGP1 homolog, RAB6A GEF complex partner 1","termid":"PBO:0066524"}


id: SO:0001118
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The pi helix has 4.1 residues per turn and a translation of 1.15 (=0.115 nm) along the helical axis. The N-H group of an amino acid forms a hydrogen bond with the C=O group of the amino acid five residues earlier.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"right_handed_peptide_helix","termid":"SO:0001116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"pi_helix","secondary_identifiers":["BS:00153","http://en.wikipedia.org/wiki/Pi_helix"],"synonyms":[{"name":"pi helix","type":"exact"}],"termid":"SO:0001118"}


id: GO:2000976
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of transcription from RNA polymerase II promoter that is involved in detection of glucose.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in detection of glucose (obsolete GO:2000976)","synonyms":[{"name":"global transcription regulation from Pol II promoter involved in detection of glucose","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in glucose detection","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in glucose perception","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in glucose sensing","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in detection of glucose","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose detection","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose perception","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in glucose sensing","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in detection of glucose","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in glucose detection","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in glucose perception","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in glucose sensing","type":"related"},{"name":"regulation of transcription from Pol II promoter involved in detection of glucose","type":"exact"},{"name":"regulation of transcription from Pol II promoter involved in glucose detection","type":"exact"},{"name":"regulation of transcription from Pol II promoter involved in glucose perception","type":"related"},{"name":"regulation of transcription from Pol II promoter involved in glucose sensing","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter involved in glucose detection","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter involved in glucose perception","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter involved in glucose sensing","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in detection of glucose","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in glucose detection","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in glucose perception","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in glucose sensing","type":"related"}],"termid":"GO:2000976"}


id: GO:0098035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The encapsulation of the viral DNA genome within the capsid, which proceeds via cleavage of the viral DNA at specific sites by a viral terminase.","definition_xrefs":["GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral DNA genome packaging","termid":"GO:0019073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral DNA genome packaging via site-specific sequence recognition","termid":"GO:0098035"}


id: PBO:0000425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA Z7","termid":"PBO:0000425"}


id: PBO:0086038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function, highly conserved across species; homolog of human CYB5R4; null mutant displays reduced frequency of mitochondrial genome loss; AIM33 has a paralog, PGA3, that arose from the whole genome duplication","termid":"PBO:0086038"}


id: PR:Q09872
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- eti1 gene.","definition_xrefs":["UniProtKB:Q09872","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C12G12.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12G12.09","synonyms":[{"name":"Spom972h-eti1","type":"exact"}],"termid":"PR:Q09872"}


id: GO:1905173
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an eukaryotic translation initiation factor 2B complex.","definition_xrefs":["GO_REF:0000079","GOC:TermGenie","PMID:27023709"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"eukaryotic translation initiation factor 2B complex assembly","synonyms":[{"name":"eIF-2B assembly","type":"exact"},{"name":"eIF-2B formation","type":"exact"},{"name":"eif2B assembly","type":"exact"},{"name":"eif2B formation","type":"exact"},{"name":"eukaryotic translation initiation factor 2B complex formation","type":"exact"}],"termid":"GO:1905173"}


id: GO:0071182
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of the intracellular domain of Notch4 (ICN4), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling.","definition_xrefs":["PMID:12370315"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"MAML3-RBP-Jkappa-ICN4 complex","synonyms":[{"name":"MAML3-RBP-Jkappa-Notch4 complex","type":"exact"}],"termid":"GO:0071182"}


id: GO:0042884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of microcin, a class of glycine-rich, bactericidal peptides (antibiotics) produced by some enteric bacteria, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["PMID:11292337","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide transport","termid":"GO:0042886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"microcin transport","termid":"GO:0042884"}


id: GO:0000702
data:
  {"annotated_genes":["SJAG_03724","SJAG_02261","SJAG_01119"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95908],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034042"},{"annotations":[95909],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034043"},{"annotations":[73374,95910,73823],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034039"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal of oxidized bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site.","definition_xrefs":["GOC:elh","PMID:11554296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA N-glycosylase activity","termid":"GO:0019104"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01119":null,"SJAG_02261":null,"SJAG_03724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016798","GO:0016787","GO:0140097","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidized base lesion DNA N-glycosylase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0000702","terms_by_termid":{"GO:0034039":null,"GO:0034042":null,"GO:0034043":null}}


id: PBO:0027147
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_farnesyltranstransferase_activity","termid":"PBO:0027147"}


id: MONDO:0012986
data:
  {"annotated_genes":["SJAG_02289"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85237],"is_not":false,"summary":null,"term":"MONDO:0012986"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bilateral polymicrogyria","termid":"MONDO:0017091"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02289":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"bilateral parasagittal parieto-occipital polymicrogyria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:10785","MEDGEN:862085","MESH:C567201","icd11.foundation:293410499","DOID:0080923","Orphanet:208441","OMIM:612691","UMLS:C4013648"],"synonyms":[{"name":"BTOP","type":"related"},{"name":"polymicrogyria, bilateral temporooccipital","type":"related"}],"termid":"MONDO:0012986","terms_by_termid":{"MONDO:0012986":null},"xrefs":{"Monarch":{"xref_id":"0012986"}}}


id: FYPO:0001011
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells do not contain filamentous actin structures, such as cortical patches or dots, or rings.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"altered level of macromolecular complex during vegetative growth","termid":"FYPO:0003684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"filamentous actin absent","synonyms":[{"name":"F-actin absent","type":"exact"},{"name":"actin filaments absent","type":"exact"},{"name":"filamentous actin absent during mitotic cell cycle","type":"related"},{"name":"filamentous actin absent during vegetative growth","type":"exact"}],"termid":"FYPO:0001011"}


id: PBO:0045880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 delta pseudogene 4","termid":"PBO:0045880"}


id: GO:0072715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a selenite ion stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to selenite ion","termid":"GO:0072714"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to selenite ion","termid":"GO:0072715"}


id: PATO:0001101
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001101 stiffness value (obsolete PATO:0001101)","termid":"PATO:0001101"}


id: PBO:0116296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nim1p-related protein kinase; septin-binding kinase that localizes to the bud neck septin ring and regulates the morphogenesis checkpoint; phosphorylates Hsl7p and cooperates with Elm1p to recruit Hsl7p to the mother-bud neck, as a prerequisite for the subsequent recruitment, phosphorylation, and degradation of Swe1p; phosphorylates and inhibits Pah1p, a phosphatidate phosphatase to regulate lipid synthesis; autophosphorylation enhances interactions with Hsl7p","termid":"PBO:0116296"}


id: MONDO:1010979
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hydranencephaly that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydranencephaly, non-human animal","termid":"MONDO:1010232"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydranencephaly, dog","secondary_identifiers":["OMIA:000486-9615"],"termid":"MONDO:1010979","xrefs":{"Monarch":{"xref_id":"1010979"}}}


id: PBO:0062638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily J member 7 pseudogene","termid":"PBO:0062638"}


id: FYECO:0000086
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ornithine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ornithine","termid":"FYECO:0000086"}


id: PBO:0089859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protoporphyrinogen oxidase Hem14","termid":"PBO:0089859"}


id: GO:0007448
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment, maintenance and elaboration of the anterior/posterior axis of the imaginal disc. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that rapidly develop into adult appendages during metamorphosis from larval to adult form.","definition_xrefs":["ISBN:0879694238","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imaginal disc pattern formation","termid":"GO:0007447"},{"relation_name":"is_a","term_name":"anterior/posterior pattern specification","termid":"GO:0009952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior/posterior pattern specification, imaginal disc","termid":"GO:0007448"}


id: MONDO:0010704
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The mildest form of otopalatodigital syndrome spectrum disorder that is characterized by a generalized skeletal dysplasia, mild intellectual disability, conductive hearing loss, and typical facial anomalies.","definition_xrefs":["Orphanet:90650"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"otopalatodigital syndrome","termid":"MONDO:0019027"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"otopalatodigital syndrome type 1","secondary_identifiers":["OMIM:311300","icd11.foundation:1442049882","UMLS:C0265251","NCIT:C118845","ICD9:759.89","MEDGEN:78542","DOID:0111783","SCTID:54036001","GARD:5121"],"synonyms":[{"name":"OPD 1 syndrome","type":"exact"},{"name":"OPD I syndrome","type":"exact"},{"name":"OPD syndrome","type":"related"},{"name":"OPD syndrome 1","type":"exact"},{"name":"OPD1","type":"exact"},{"name":"Taybi syndrome","type":"exact"},{"name":"frontootopalatodigital osteodysplasia","type":"related"},{"name":"oto-palato-digital syndrome type 1","type":"exact"},{"name":"otopalatodigital spectrum disorder","type":"related"},{"name":"otopalatodigital syndrome, type 1","type":"exact"},{"name":"otopalatodigital syndrome, type I","type":"exact"},{"name":"otopalatodigital syndrome, type I, X-linked dominant","type":"exact"}],"termid":"MONDO:0010704","xrefs":{"Monarch":{"xref_id":"0010704"}}}


id: PBO:0049536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A.Z histone pseudogene 7","termid":"PBO:0049536"}


id: PBO:0086216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that binds to the Rap1p C-terminus; acts synergistically with Rif1p to help control telomere length and establish telomeric silencing; deletion results in telomere elongation; RIF2 has a paralog, ORC4, that arose from the whole genome duplication","termid":"PBO:0086216"}


id: PR:O94711
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gyp2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94711"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein gyp2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1259.11c","synonyms":[{"name":"Spom972h-gyp2","type":"exact"}],"termid":"PR:O94711"}


id: MONDO:0015778
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A hypothyroidism that is part of a larger syndrome.","definition_xrefs":["MONDO:patterns/syndromic"],"gene_count":0,"genotype_count":0,"name":"obsolete syndromic hypothyroidism (obsolete MONDO:0015778)","secondary_identifiers":["Orphanet:177107"],"synonyms":[{"name":"syndrome associated with hypothyroidism","type":"exact"},{"name":"syndromic hypothyroidism","type":"exact"}],"termid":"MONDO:0015778","xrefs":{"Monarch":{"xref_id":"0015778"}}}


id: MONDO:0007454
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing type 1 diabetes mellitus in which the cause of the disease is a mutation in the INS gene.","definition_xrefs":["MONDO:patterns/inherited_susceptibility","MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"type 1 diabetes mellitus","termid":"MONDO:0005147"},{"relation_name":"is_a","term_name":"diabetes mellitus, insulin-dependent, X-linked, susceptibility to","termid":"MONDO:0010255"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 1 diabetes mellitus 2","secondary_identifiers":["DOID:0110741","MESH:C565100","MEDGEN:377588","OMIM:125852","UMLS:C1852092"],"synonyms":[{"name":"IDDM2","type":"exact"},{"name":"INS type 1 diabetes mellitus","type":"exact"},{"name":"diabetes mellitus, insulin-dependent, 2","type":"related"},{"name":"diabetes mellitus, insulin-dependent, type 2","type":"exact"},{"name":"insulin-dependent diabetes mellitus 2","type":"exact"},{"name":"type 1 diabetes mellitus caused by mutation in INS","type":"exact"}],"termid":"MONDO:0007454","xrefs":{"Monarch":{"xref_id":"0007454"}}}


id: GO:0047353
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-methylethanolamine phosphate + CTP = CDP-N-methylethanolamine + diphosphate.","definition_xrefs":["EC:2.7.7.57","RHEA:10576"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytidylyltransferase activity","termid":"GO:0070567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016779"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016779","GO:0016740"],"is_obsolete":false,"name":"N-methylphosphoethanolamine cytidylyltransferase activity","secondary_identifiers":["MetaCyc:2.7.7.57-RXN","KEGG_REACTION:R03375"],"synonyms":[{"name":"CTP:N-methylethanolamine-phosphate cytidylyltransferase activity","type":"related"},{"name":"CTP:N-methylphosphoethanolamine cytidylyltransferase activity","type":"exact"},{"name":"CTP:P-MEA cytidylyltransferase activity","type":"related"},{"name":"monomethylethanolamine phosphate cytidylyltransferase activity","type":"related"}],"termid":"GO:0047353"}


id: MONDO:0007931
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Best vitelliform macular dystrophy (BVMD) is a genetic macular dystrophy characterized by loss of central visual acuity, metamorphopsia and a decrease in the Arden ratio secondary to an egg yolk-like lesion located in the foveal or parafoveal region.","definition_xrefs":["Orphanet:1243"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitelliform macular dystrophy","termid":"MONDO:0000390"},{"relation_name":"is_a","term_name":"BEST1-related dominant retinopathy","termid":"MONDO:0700238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"vitelliform macular dystrophy 2","secondary_identifiers":["SCTID:763387005","GARD:182","ICD10CM:H35.5","NORD:853","OMIM:153700","MEDGEN:411553","UMLS:C2745945"],"synonyms":[{"name":"BEST1 retinopathy","type":"exact"},{"name":"BMD","type":"exact"},{"name":"BVMD","type":"exact"},{"name":"Best Vitelliform Macular Dystrophy","type":"exact"},{"name":"Best disease","type":"exact"},{"name":"Best macular dystrophy","type":"exact"},{"name":"Best vitelliform macular dystrophy, multifocal","type":"related"},{"name":"VMD2","type":"related"},{"name":"early-onset vitelliform macular dystrophy","type":"exact"},{"name":"juvenile-onset vitelliform macular dystrophy","type":"exact"},{"name":"macular Degeneration, polymorphic vitelline","type":"related"},{"name":"macular degeneration, polymorphic vitelline","type":"exact"},{"name":"macular dystrophy, vitelliform, 2","type":"related"},{"name":"macular dystrophy, vitelliform, type 2","type":"exact"},{"name":"polymorphic vitelline macular degeneration","type":"exact"},{"name":"vitelliform macular dystrophy type 2","type":"exact"},{"name":"vitelliform macular dystrophy, early-onset","type":"exact"},{"name":"vitelliform macular dystrophy, juvenile-onset","type":"exact"},{"name":"vitelliform macular dystrophy, type 2","type":"narrow"}],"termid":"MONDO:0007931","xrefs":{"Monarch":{"xref_id":"0007931"}}}


id: PBO:0081519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 428","termid":"PBO:0081519"}


id: PBO:0028325
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_nucleus_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0028325"}


id: MONDO:1010930
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Myotubular myopathy 1 that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myotubular myopathy 1, non-human animal","termid":"MONDO:1010202"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myotubular myopathy 1, domestic cat","secondary_identifiers":["OMIA:001508-9685"],"termid":"MONDO:1010930","xrefs":{"Monarch":{"xref_id":"1010930"}}}


id: MONDO:0008655
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vestibulocochlear dysfunction, progressive","secondary_identifiers":["MESH:C536346","OMIM:193005","MEDGEN:419730","UMLS:C2931176"],"synonyms":[{"name":"familial progressive vestibulocochlear dysfunction","type":"related"},{"name":"vestibulocochlear dysfunction, progressive","type":"exact"}],"termid":"MONDO:0008655","xrefs":{"Monarch":{"xref_id":"0008655"}}}


id: PBO:0081506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 410","termid":"PBO:0081506"}


id: MONDO:0023543
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"intellectual disability","termid":"MONDO:0001071"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"disorder of pilosebaceous unit","termid":"MONDO:0002917"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Katsantoni-Papadakou-Lagoyanni syndrome","secondary_identifiers":["MESH:C537012","UMLS:C2931394","MEDGEN:419400"],"synonyms":[{"name":"Katsantoni Papadakou Lagoyanni syndrome","type":"related"},{"name":"Trichodermal syndrome and intellectual disability","type":"related"},{"name":"Trichodermal syndrome and mental retardation","type":"related"}],"termid":"MONDO:0023543","xrefs":{"Monarch":{"xref_id":"0023543"}}}


id: FYPO:0003640
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of adenylate kinase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000707","FYPO:0001985","FYPO:0000652","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal adenylate kinase activity","termid":"FYPO:0003640"}


id: GO:0090354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"regulates","term_name":"auxin metabolic process","termid":"GO:0009850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of auxin metabolic process","synonyms":[{"name":"regulation of auxin metabolism","type":"exact"}],"termid":"GO:0090354"}


id: GO:0007191
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An adenylate cyclase-activating G protein-coupled receptor signaling pathway initiated by dopamine binding to its receptor, and ending with the regulation of a downstream cellular process.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-activating G protein-coupled receptor signaling pathway","termid":"GO:0007189"},{"relation_name":"is_a","term_name":"G protein-coupled dopamine receptor signaling pathway","termid":"GO:0007212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"adenylate cyclase-activating dopamine receptor signaling pathway","synonyms":[{"name":"activation of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"activation of adenylate cyclase activity by dopamine receptor signalling pathway","type":"related"},{"name":"dopamine receptor, adenylate cyclase activating pathway","type":"exact"},{"name":"dopamine receptor, adenylyl cyclase activating pathway","type":"exact"}],"termid":"GO:0007191"}


id: FYPO:0000223
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is longer, and has a greater length:diameter ratio, than normal, and has more than one septum.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"multiseptate vegetative cell","termid":"FYPO:0000118"},{"relation_name":"is_a","term_name":"multiseptate vegetative cell","termid":"FYPO:0000118"},{"relation_name":"is_a","term_name":"elongated septated vegetative cell","termid":"FYPO:0004750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0000005","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"elongated multiseptate vegetative cell","synonyms":[{"name":"elongated multiseptate cell during mitotic cell cycle","type":"related"},{"name":"elongated multiseptate cells during vegetative growth","type":"exact"},{"name":"long multiseptate cells","type":"exact"}],"termid":"FYPO:0000223"}


id: PBO:0088874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acylpeptide hydrolase","termid":"PBO:0088874"}


id: MONDO:0007917
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lymphedema-cerebral arteriovenous anomaly syndrome is characterized by the variable association of a cerebrovascular malformation, foot lymphoedema and primary pulmonary hypertension. It has been described in a woman and four of her children.","definition_xrefs":["Orphanet:86914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphedema-cerebral arteriovenous anomaly syndrome","secondary_identifiers":["GARD:9217","MEDGEN:322617","MESH:C563612","OMIM:152900","UMLS:C1835272"],"synonyms":[{"name":"lymphedema and cerebral arteriovenous anomaly","type":"related"},{"name":"primary pulmonary hypertension, cerebrovascular malformation and lymphedema feet","type":"related"}],"termid":"MONDO:0007917","xrefs":{"Monarch":{"xref_id":"0007917"}}}


id: PBO:0055264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2691","termid":"PBO:0055264"}


id: GO:1990322
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen homotrimer of alpha1(XXIII) chains; type XXIII collagen triple helices span the plasma membrane.","definition_xrefs":["GOC:bhm","PMID:17876790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane collagen trimer","termid":"GO:0030936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"collagen type XXIII trimer","termid":"GO:1990322"}


id: MONDO:0009708
data:
  {"annotated_genes":["SJAG_02431","SJAG_03703"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84802,84803],"is_not":false,"summary":null,"term":"MONDO:0009708"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hyaline body myopathy","termid":"MONDO:0018889"},{"relation_name":"is_a","term_name":"congenital myopathy","termid":"MONDO:0019952"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02431":null,"SJAG_03703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"myopathy, myosin storage, autosomal recessive","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C564970","DOID:0111268","GARD:15207","MEDGEN:340603","OMIM:255160","Orphanet:636970","UMLS:C1850709"],"synonyms":[{"name":"MSMB","type":"related"},{"name":"autosomal recessive myosin storage myopathy","type":"exact"},{"name":"myopathy, hyaline body, autosomal recessive","type":"related"},{"name":"myopathy, myosin storage, autosomal recessive","type":"exact"}],"termid":"MONDO:0009708","terms_by_termid":{"MONDO:0009708":null},"xrefs":{"Monarch":{"xref_id":"0009708"}}}


id: GO:0045020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. DNA repair pathways that tend to increase the endogenous mutation rate.","definition_xrefs":["GOC:jl","PMID:11459974"],"gene_count":0,"genotype_count":0,"name":"obsolete error-prone DNA repair (obsolete GO:0045020)","synonyms":[{"name":"error-prone DNA repair","type":"exact"},{"name":"mutagenic DNA repair","type":"exact"}],"termid":"GO:0045020"}


id: GO:0097308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a farnesol stimulus.","definition_xrefs":["PMID:11425711","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"response to farnesol","termid":"GO:0097307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to farnesol","termid":"GO:0097308"}


id: PBO:0017569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diacylglycerol cholinephosphotransferase/ diacylglycerol ethanolaminesphotransferase Ept1 (predicted)","termid":"PBO:0017569"}


id: PBO:0090419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ragulator complex subunit, human LAMTOR1 ortholog","termid":"PBO:0090419"}


id: GO:0035152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Ensuring that tracheal cells form and maintain tubular structures with the correct size and shape for their position in the network. This is essential for efficient flow of gases through the tracheal network.","definition_xrefs":["GOC:mtg_sensu","PMID:14570584"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"},{"relation_name":"part_of","term_name":"open tracheal system development","termid":"GO:0007424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of tube architecture, open tracheal system","synonyms":[{"name":"regulation of tracheal tube architecture","type":"exact"}],"termid":"GO:0035152"}


