# terms

id: GO:2000223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of BMP signaling pathway involved in heart jogging.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of BMP signaling pathway involved in heart jogging (obsolete GO:2000223)","synonyms":[{"name":"regulation of BMP signalling pathway involved in heart jogging pathway involved in somitogenesis","type":"exact"}],"termid":"GO:2000223"}


id: PBO:0027751
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_nucleus","termid":"PBO:0027751"}


id: GO:0010949
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of phytosterols into the blood by absorption from the small intestine.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intestinal lipid absorption","termid":"GO:1904730"},{"relation_name":"negatively_regulates","term_name":"intestinal phytosterol absorption","termid":"GO:0060752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of intestinal phytosterol absorption","termid":"GO:0010949"}


id: GO:0031573
data:
  {"annotated_genes":["SJAG_00327","SJAG_01044","SJAG_02771","SJAG_00429","SJAG_04671","SJAG_00623","SJAG_01605","SJAG_05373","SJAG_02563","SJAG_03160","SJAG_01708","SJAG_01677","SJAG_04287","SJAG_00364","SJAG_03048","SJAG_04332","SJAG_03026","SJAG_00640","SJAG_03898"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73574,74043,78593,78928,79042,88868,88913,90199,91189,94300,95773,99148,100645,102148,106418,107466,111528,111833,115872],"is_not":false,"summary":null,"term":"GO:0031573"}]},"cv_name":"biological_process","definition":"A mitotic cell cycle checkpoint that slows DNA synthesis in response to DNA damage by the prevention of new origin firing and the stabilization of slow replication fork progression.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic DNA damage checkpoint signaling","termid":"GO:0044773"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00327":null,"SJAG_00364":null,"SJAG_00429":null,"SJAG_00623":null,"SJAG_00640":null,"SJAG_01044":null,"SJAG_01605":null,"SJAG_01677":null,"SJAG_01708":null,"SJAG_02563":null,"SJAG_02771":null,"SJAG_03026":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03898":null,"SJAG_04287":null,"SJAG_04332":null,"SJAG_04671":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"mitotic intra-S DNA damage checkpoint signaling","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0072428"],"synonyms":[{"name":"S-phase checkpoint","type":"broad"},{"name":"intra-S DNA damage checkpoint","type":"exact"},{"name":"mitotic intra-S DNA damage checkpoint","type":"exact"},{"name":"signal transduction involved in intra-S DNA damage checkpoint","type":"exact"}],"termid":"GO:0031573","terms_by_termid":{"GO:0031573":null}}


id: GO:0032137
data:
  {"annotated_genes":["SJAG_02226","SJAG_02748"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105876,116252],"is_not":false,"summary":null,"term":"GO:0032137"}]},"cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing a G/T mispair.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatched DNA binding","termid":"GO:0030983"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02226":null,"SJAG_02748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003677"],"is_obsolete":false,"name":"guanine/thymine mispair binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"G/T mispair binding","type":"exact"},{"name":"T/G mispair binding","type":"exact"},{"name":"thymine/guanine mispair binding","type":"exact"}],"termid":"GO:0032137","terms_by_termid":{"GO:0032137":null}}


id: GO:0070666
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mast cell proliferation.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte proliferation","termid":"GO:0070663"},{"relation_name":"regulates","term_name":"mast cell proliferation","termid":"GO:0070662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mast cell proliferation","termid":"GO:0070666"}


id: RO:0002551
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation between a segment or subdivision of an organism and the maximal subdivision of material entities that provides structural support for that segment or subdivision.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_part","termid":"BFO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_skeleton","termid":"RO:0002551"}


id: FYPO:0002366
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 4 of histone H3 occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone methylation during vegetative growth","termid":"FYPO:0000870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002494","FYPO:0002274","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased histone H3-K4 methylation during vegetative growth","synonyms":[{"name":"decreased histone H3 K4 methylation during vegetative growth","type":"exact"},{"name":"decreased histone H3-K4 methylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K4me during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K4 methylation during vegetative growth","type":"exact"},{"name":"reduced histone H3-K4 methylation during vegetative growth","type":"exact"}],"termid":"FYPO:0002366"}


id: PBO:0110115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi Ras-interacting protein with DIL domain, human RADIL and RASIP1 ortholog (predicted), implicated in cytoskeleton organization","termid":"PBO:0110115"}


id: GO:0050923
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of a motile cell or organism towards a lower concentration in a concentration gradient of a specific chemical.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chemotaxis","termid":"GO:0050920"},{"relation_name":"regulates","term_name":"negative chemotaxis","termid":"GO:0050919"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of negative chemotaxis","termid":"GO:0050923"}


id: PBO:0046939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 66 member A","termid":"PBO:0046939"}


id: PBO:0072994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCML2 pseudogene 1","termid":"PBO:0072994"}


id: GO:1905880
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of oogenesis.","definition_xrefs":["PMID:26434723","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell development","termid":"GO:0010721"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of oogenesis","termid":"GO:1905879"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"oogenesis","termid":"GO:0048477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of oogenesis","synonyms":[{"name":"down regulation of oogenesis","type":"exact"},{"name":"down regulation of ovum development","type":"exact"},{"name":"down-regulation of oogenesis","type":"exact"},{"name":"down-regulation of ovum development","type":"exact"},{"name":"downregulation of oogenesis","type":"exact"},{"name":"downregulation of ovum development","type":"exact"},{"name":"inhibition of oogenesis","type":"narrow"},{"name":"inhibition of ovum development","type":"narrow"},{"name":"negative regulation of ovum development","type":"exact"}],"termid":"GO:1905880"}


id: PBO:0073517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain binding glutamate rich protein like 2","termid":"PBO:0073517"}


id: PBO:0051314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR2-11 (pseudogene)","termid":"PBO:0051314"}


id: MOD:00502
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes three hydrogen atoms of a residue with three iodine atoms.","definition_xrefs":["PubMed:15627961","PubMed:2026710","OMSSA:116","Unimod:131"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodinated residue","termid":"MOD:00755"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"triiodinated residue","synonyms":[{"name":"I3Res","type":"exact"},{"name":"Triiodo","type":"related"},{"name":"tri-Iodination","type":"related"},{"name":"triiodinationy","type":"exact"}],"termid":"MOD:00502"}


id: MONDO:0017960
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete CANDLE syndrome (obsolete MONDO:0017960)","termid":"MONDO:0017960","xrefs":{"Monarch":{"xref_id":"0017960"}}}


id: MONDO:0006599
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A distinct subgroup of the urticaria that are induced by an exogenous physical stimulus rather than occurring spontaneously.","definition_xrefs":["Wikipedia:Physical_urticaria"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urticaria","termid":"MONDO:0005492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"physical urticaria","secondary_identifiers":["DOID:0060220","EFO:1000754","MEDGEN:1639813","SCTID:402601007","UMLS:C4551831"],"termid":"MONDO:0006599","xrefs":{"Monarch":{"xref_id":"0006599"}}}


id: PBO:0081002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 40","termid":"PBO:0081002"}


id: PBO:0066854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 154","termid":"PBO:0066854"}


id: PBO:0089506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ mediated genome instability protein Rmi1","termid":"PBO:0089506"}


id: PBO:0063435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDE4DIP pseudogene 9","termid":"PBO:0063435"}


id: GO:0018179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The desulfurization of peptidyl-L-cysteine to yield L-alanine and elemental sulfur; peptidyl-L-cysteine persulfide is an intermediate.","definition_xrefs":["RESID:AA0269"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-cysteine desulfurization (obsolete GO:0018179)","synonyms":[{"name":"peptidyl-cysteine desulfurization","type":"exact"},{"name":"peptidyl-cysteine desulphurization","type":"exact"}],"termid":"GO:0018179"}


id: GO:0048808
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of male genitalia are generated and organized.","definition_xrefs":["GOC:ems","ISBN:0140512888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genitalia morphogenesis","termid":"GO:0035112"},{"relation_name":"is_a","term_name":"male anatomical structure morphogenesis","termid":"GO:0090598"},{"relation_name":"part_of","term_name":"male genitalia development","termid":"GO:0030539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male genitalia morphogenesis","synonyms":[{"name":"male genital morphogenesis","type":"related"}],"termid":"GO:0048808"}


id: PBO:0073148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC24 homolog A pseudogene 1","termid":"PBO:0073148"}


id: PBO:0042045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 102A","termid":"PBO:0042045"}


id: SO:0002047
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Transcription pause sites are regions of a gene where RNA polymerase may pause during transcription. The functional role of pausing may be to facilitate factor recruitment, RNA folding, and synchronization with translation. Consensus transcription pause site have been observed in E. coli.","definition_xrefs":["SO:ke","PMID:24789973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptional_cis_regulatory_region","termid":"SO:0001055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription_pause_site","synonyms":[{"name":"transcription pause site","type":"exact"}],"termid":"SO:0002047"}


id: MONDO:0001713
data:
  {"annotated_genes":["SJAG_02708","SJAG_00465","SJAG_02335","SJAG_02585","SJAG_01296","SJAG_01588","SJAG_02597","SJAG_01512","SJAG_03762","SJAG_04414","SJAG_00921","SJAG_02340","SJAG_00749","SJAG_00611","SJAG_01568","SJAG_02894","SJAG_02339","SJAG_03254","SJAG_03919","SJAG_01366","SJAG_04695","SJAG_02358","SJAG_04204","SJAG_01840","SJAG_05180","SJAG_02904","SJAG_01621","SJAG_00166","SJAG_02556","SJAG_04066","SJAG_02046","SJAG_04478","SJAG_01410","SJAG_00468","SJAG_02749","SJAG_04746","SJAG_02802","SJAG_02280","SJAG_04168","SJAG_03335"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86062],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013851"},{"annotations":[85274,85275],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007110"},{"annotations":[86048,86047],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013217"},{"annotations":[86937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013964"},{"annotations":[85572,85571],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014245"},{"annotations":[86147],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014394"},{"annotations":[85083],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010493"},{"annotations":[86176,86177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011639"},{"annotations":[86572,86571],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044309"},{"annotations":[86575],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044310"},{"annotations":[85805,85806],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032668"},{"annotations":[85807],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032669"},{"annotations":[85809,85810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032670"},{"annotations":[85526],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0031071"},{"annotations":[85605,85606],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012529"},{"annotations":[86509,86510],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012924"},{"annotations":[86507,86508],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012925"},{"annotations":[86525,86526],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012937"},{"annotations":[86524,86523],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012938"},{"annotations":[86527],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012939"},{"annotations":[86049,86050],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013216"},{"annotations":[86073],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013248"},{"annotations":[86497],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013499"},{"annotations":[84778],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014108"},{"annotations":[86752],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014986"},{"annotations":[86756],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014987"},{"annotations":[86753],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014985"}]},"cv_name":"mondo","definition":"An inborn condition characterized by deficiencies of red cell precursors that sometimes also includes leukopenia and thrombocytopenia.","definition_xrefs":["MESH:D029502"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"idiopathic aplastic anemia","termid":"MONDO:0012197"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"aplastic anemia","termid":"MONDO:0015909"}],"gene_count":40,"genes_by_uniquename":{"SJAG_00166":null,"SJAG_00465":null,"SJAG_00468":null,"SJAG_00611":null,"SJAG_00749":null,"SJAG_00921":null,"SJAG_01296":null,"SJAG_01366":null,"SJAG_01410":null,"SJAG_01512":null,"SJAG_01568":null,"SJAG_01588":null,"SJAG_01621":null,"SJAG_01840":null,"SJAG_02046":null,"SJAG_02280":null,"SJAG_02335":null,"SJAG_02339":null,"SJAG_02340":null,"SJAG_02358":null,"SJAG_02556":null,"SJAG_02585":null,"SJAG_02597":null,"SJAG_02708":null,"SJAG_02749":null,"SJAG_02802":null,"SJAG_02894":null,"SJAG_02904":null,"SJAG_03254":null,"SJAG_03335":null,"SJAG_03762":null,"SJAG_03919":null,"SJAG_04066":null,"SJAG_04168":null,"SJAG_04204":null,"SJAG_04414":null,"SJAG_04478":null,"SJAG_04695":null,"SJAG_04746":null,"SJAG_05180":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"inherited aplastic anemia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:284.0","MEDGEN:1826154","NANDO:2201275","UMLS:C5681331","Orphanet:68383","GARD:18889","SCTID:28975000","NANDO:1200302","ICD9:284.09","ICD10CM:D61.0","DOID:1342"],"synonyms":[{"name":"congenital aplastic anaemia","type":"related"},{"name":"congenital aplastic anemia","type":"related"},{"name":"congenital hypoplastic anaemia","type":"related"},{"name":"congenital hypoplastic anemia","type":"related"},{"name":"constitutional aplastic anaemia","type":"exact"},{"name":"constitutional aplastic anemia","type":"exact"},{"name":"hereditary aplastic anaemia","type":"exact"},{"name":"hereditary aplastic anemia","type":"exact"},{"name":"hypoplastic anaemia - familial","type":"related"},{"name":"hypoplastic anemia - familial","type":"related"},{"name":"rare constitutional aplastic anaemia","type":"narrow"},{"name":"rare constitutional aplastic anemia","type":"narrow"}],"termid":"MONDO:0001713","terms_by_termid":{"MONDO:0007110":null,"MONDO:0010493":null,"MONDO:0011639":null,"MONDO:0012529":null,"MONDO:0012924":null,"MONDO:0012925":null,"MONDO:0012937":null,"MONDO:0012938":null,"MONDO:0012939":null,"MONDO:0013216":null,"MONDO:0013217":null,"MONDO:0013248":null,"MONDO:0013499":null,"MONDO:0013851":null,"MONDO:0013964":null,"MONDO:0014108":null,"MONDO:0014245":null,"MONDO:0014394":null,"MONDO:0014985":null,"MONDO:0014986":null,"MONDO:0014987":null,"MONDO:0031071":null,"MONDO:0032668":null,"MONDO:0032669":null,"MONDO:0032670":null,"MONDO:0044309":null,"MONDO:0044310":null},"xrefs":{"Monarch":{"xref_id":"0001713"}}}


id: MONDO:0029131
data:
  {"annotated_genes":["SJAG_04472","SJAG_04656"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86106,86107],"is_not":false,"summary":null,"term":"MONDO:0029131"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04472":null,"SJAG_04656":null},"genotype_count":0,"is_obsolete":false,"name":"peripheral neuropathy, autosomal recessive, with or without impaired intellectual development","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4748283","OMIM:618124","MEDGEN:1648480"],"synonyms":[{"name":"PNRIID","type":"related"},{"name":"peripheral neuropathy, autosomal recessive, with or without impaired intellectual development","type":"exact"}],"termid":"MONDO:0029131","terms_by_termid":{"MONDO:0029131":null},"xrefs":{"Monarch":{"xref_id":"0029131"}}}


id: PBO:0069685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 964, pseudogene","termid":"PBO:0069685"}


id: PBO:0049926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HGH1 homolog","termid":"PBO:0049926"}


id: MONDO:0020979
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hamartoma characterized by localized pilosebaceous apparatus malformation.","definition_xrefs":["NCIT:C5565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hamartoma of skin appendage","termid":"MONDO:0021539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"pilosebaceous hamartoma","secondary_identifiers":["icd11.foundation:59912591","UMLS:C1335410","MEDGEN:277515"],"synonyms":[{"name":"pilosebaceous hamartoma","type":"exact"}],"termid":"MONDO:0020979","xrefs":{"Monarch":{"xref_id":"0020979"}}}


id: PR:Q9UUE7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cdc73 gene.","definition_xrefs":["UniProtKB:Q9UUE7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division control protein 73 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17G9.02c","synonyms":[{"name":"Spom972h-cdc73","type":"exact"}],"termid":"PR:Q9UUE7"}


id: MONDO:0009675
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive limb-girdle muscular dystrophy type 2A (LGMD2A) is a subtype of autosomal recessive limb girdle muscular dystrophy characterized by a variable age of onset of progressive, typically symmetrical and selective weakness and atrophy of proximal shoulder- and pelvic-girdle muscles (gluteus maximus, thigh adductors, and muscles of the posterior compartment of the limbs are most commonly affected) without cardiac or facial involvement. Clinical manifestations include exercise intolerance, a waddling gait, scapular winging and calf pseudo-hypertrophy.","definition_xrefs":["Orphanet:267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive limb-girdle muscular dystrophy type 2A","secondary_identifiers":["MESH:C535895","MEDGEN:358391","NCIT:C142079","GARD:1057","DOID:0110275","SCTID:715341003","OMIM:253600","UMLS:C1869123"],"synonyms":[{"name":"CAPN3 autosomal recessive limb-girdle muscular dystrophy","type":"exact"},{"name":"LGMD2","type":"related"},{"name":"LGMD2A","type":"exact"},{"name":"Leyden-Moebius muscular dystrophy","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy caused by mutation in CAPN3","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy type 2A","type":"exact"},{"name":"calpainopathy","type":"exact"},{"name":"limb-girdle muscular dystrophy due to calpain deficiency","type":"exact"},{"name":"limb-girdle muscular dystrophy type 2","type":"related"},{"name":"limb-girdle muscular dystrophy type 2A","type":"exact"},{"name":"muscular dystrophy limb girdle type 2A, erb type","type":"related"},{"name":"muscular dystrophy, Pelvofemoral","type":"related"},{"name":"muscular dystrophy, limb-girdle, autosomal recessive 1","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 2","type":"related"},{"name":"muscular dystrophy, limb-girdle, type 2A","type":"exact"},{"name":"myositis, eosinophilic","type":"related"},{"name":"pelvofemoral muscular dystrophy","type":"exact"},{"name":"primary calpainopathy","type":"exact"}],"termid":"MONDO:0009675","xrefs":{"Monarch":{"xref_id":"0009675"}}}


id: MONDO:0013012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory bowel disease that has material basis in variation in the chromosome region 13q13.3","definition_xrefs":["PMID:18246054","DOID:0110902"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory bowel disease","termid":"MONDO:0005265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004335"],"is_obsolete":false,"name":"inflammatory bowel disease 27","secondary_identifiers":["MESH:C567559","OMIM:612796","UMLS:C2748550","MEDGEN:412579"],"synonyms":[{"name":"IBD27","type":"exact"},{"name":"inflammatory bowel disease 27","type":"exact"},{"name":"inflammatory bowel disease type 27","type":"exact"}],"termid":"MONDO:0013012","xrefs":{"Monarch":{"xref_id":"0013012"}}}


id: GO:0019912
data:
  {"annotated_genes":["SJAG_01000"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91899],"is_not":false,"summary":null,"term":"GO:0019912"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; increases the activity of a cyclin-dependent protein kinase (CDK).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase activity","termid":"GO:0004672"},{"relation_name":"is_a","term_name":"protein kinase activator activity","termid":"GO:0030295"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004672"}],"interesting_parent_ids":["GO:0140677","GO:0003824","GO:0016301","GO:0004672","GO:0003674","GO:0098772","GO:0140096","GO:0016740","GO:0030234"],"is_obsolete":false,"name":"cyclin-dependent protein kinase activating kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0019913"],"synonyms":[{"name":"CAK","type":"exact"},{"name":"cdk-activating kinase activity","type":"exact"},{"name":"cyclin-dependent protein kinase activating kinase, intrinsic catalyst activity","type":"exact"}],"termid":"GO:0019912","terms_by_termid":{"GO:0019912":null}}


id: GO:0045229
data:
  {"annotated_genes":["SJAG_00218","SJAG_02718","SJAG_04073","SJAG_00974","SJAG_04620","SJAG_02446","SJAG_02649","SJAG_01017","SJAG_02733","SJAG_02192","SJAG_01171","SJAG_03631","SJAG_00667","SJAG_03444","SJAG_03013","SJAG_01181","SJAG_01290","SJAG_04462","SJAG_05001","SJAG_04868","SJAG_01321","SJAG_03646","SJAG_01835","SJAG_01888","SJAG_03295","SJAG_01453","SJAG_01227","SJAG_02590","SJAG_02845","SJAG_04595","SJAG_00163"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91527,88450,87957,89998],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030476"},{"annotations":[101734,101735,111114,107867,88023,99935,93780,88841],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904541"},{"annotations":[74188,80015,102243,70461,77613,89081,70911,75001,74858,109848,76048,70524,77580,76553,79294,75497],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031505"},{"annotations":[71237,110776,87339],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0060237"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell.","definition_xrefs":["GOC:mah","GOC:ai","GOC:jl","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00163":null,"SJAG_00218":null,"SJAG_00667":null,"SJAG_00974":null,"SJAG_01017":null,"SJAG_01171":null,"SJAG_01181":null,"SJAG_01227":null,"SJAG_01290":null,"SJAG_01321":null,"SJAG_01453":null,"SJAG_01835":null,"SJAG_01888":null,"SJAG_02192":null,"SJAG_02446":null,"SJAG_02590":null,"SJAG_02649":null,"SJAG_02718":null,"SJAG_02733":null,"SJAG_02845":null,"SJAG_03013":null,"SJAG_03295":null,"SJAG_03444":null,"SJAG_03631":null,"SJAG_03646":null,"SJAG_04073":null,"SJAG_04462":null,"SJAG_04595":null,"SJAG_04620":null,"SJAG_04868":null,"SJAG_05001":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"external encapsulating structure organization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"external encapsulating structure organisation","type":"exact"},{"name":"external encapsulating structure organization and biogenesis","type":"exact"}],"termid":"GO:0045229","terms_by_termid":{"GO:0030476":null,"GO:0031505":null,"GO:0060237":null,"GO:1904541":null}}


id: MONDO:0010732
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spastic paraparesis-deafness syndrome is a chronic neurodegenerative disorder characterized by spastic paraparesis (beginning at about 10 years of age) and hearing deficits.","definition_xrefs":["Orphanet:2815"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spastic paraparesis-deafness syndrome","secondary_identifiers":["GARD:5555","SCTID:715504003","UMLS:C2931291","MESH:C536692","MEDGEN:419037","ICD10CM:G11.4","DOID:0081100","OMIM:312910"],"synonyms":[{"name":"Wells-Jankovic syndrome","type":"exact"},{"name":"familial spastic paraparesis and deafness","type":"related"},{"name":"spastic paraparesis - deafness","type":"related"},{"name":"spastic paraparesis and deafness","type":"related"}],"termid":"MONDO:0010732","xrefs":{"Monarch":{"xref_id":"0010732"}}}


id: GO:0052447
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the ethylene-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of symbiont ethylene-mediated defense response (obsolete GO:0052447)","synonyms":[{"name":"modulation by organism of symbiont ethylene-mediated defense response","type":"exact"}],"termid":"GO:0052447"}


id: GO:0019431
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetyl-CoA from ethanol via acetaldehyde.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ethanol metabolic process","termid":"GO:0006067"},{"relation_name":"is_a","term_name":"acetyl-CoA biosynthetic process","termid":"GO:0006085"},{"relation_name":"is_a","term_name":"generation of precursor metabolites and energy","termid":"GO:0006091"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281","GO:0006091","GO:0006790"],"is_obsolete":false,"name":"acetyl-CoA biosynthetic process from ethanol","synonyms":[{"name":"acetyl-CoA anabolism from ethanol","type":"exact"},{"name":"acetyl-CoA formation from ethanol","type":"exact"},{"name":"acetyl-CoA synthesis from ethanol","type":"exact"}],"termid":"GO:0019431"}


id: PBO:0064516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II, I and III subunit L","termid":"PBO:0064516"}


id: PBO:0072697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RUN and SH3 domain containing 2","termid":"PBO:0072697"}


id: PBO:0051268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa constant","termid":"PBO:0051268"}


id: PBO:0004856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Rpn13a","termid":"PBO:0004856"}


id: MONDO:0006743
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infection of the endocrine glands with species of mycobacterium, most often mycobacterium tuberculosis.","definition_xrefs":["MESH:D014383"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocrine system disorder","termid":"MONDO:0005151"},{"relation_name":"is_a","term_name":"tuberculosis","termid":"MONDO:0018076"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endocrine tuberculosis","secondary_identifiers":["MEDGEN:52884","UMLS:C0041310"],"termid":"MONDO:0006743","xrefs":{"Monarch":{"xref_id":"0006743"}}}


id: GO:0097635
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the autophagosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:autophagy","GOC:mf"],"gene_count":0,"genotype_count":0,"name":"obsolete extrinsic component of autophagosome membrane (obsolete GO:0097635)","synonyms":[{"name":"autophagic vacuole peripheral membrane","type":"related"},{"name":"extrinsic component of autophagic vacuole membrane","type":"exact"},{"name":"extrinsic to autophagic vacuole membrane","type":"exact"}],"termid":"GO:0097635"}


id: PBO:0026680
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_arginine_level","termid":"PBO:0026680"}


id: GO:0150053
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A synapse of a climbing fiber onto the dendrites of a Purkinje cell in cerebellum. The climbing fiber originates from the inferior olivary nucleus of the medulla oblongata.","definition_xrefs":["GOC:bc","PMID:5044254","PMID:19597563","GOC:aruk","PMID:23811844"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asymmetric, glutamatergic, excitatory synapse","termid":"GO:0098985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cerebellar climbing fiber to Purkinje cell synapse","synonyms":[{"name":"cerebellar climbing fibre to Purkinje cell synapse","type":"exact"}],"termid":"GO:0150053"}


id: FYPO:0005065
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 at the mating type locus occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000871"},{"relation_name":"is_a","term_name":"abnormal histone methylation at silent mating-type cassette during vegetative growth","termid":"FYPO:0007373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0002274","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H3-K9 methylation at mating type locus during vegetative growth","synonyms":[{"name":"increased histone H3 K9 methylation at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 methylation at mating type locus during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 methylation at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone H3K9me at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 methylation at mating type locus during vegetative growth","type":"exact"}],"termid":"FYPO:0005065"}


id: GO:0006369
data:
  {"annotated_genes":["SJAG_01713","SJAG_02242","SJAG_04942","SJAG_03923","SJAG_03624","SJAG_03126","SJAG_04527","SJAG_04006","SJAG_03689","SJAG_03179","SJAG_02037","SJAG_02156"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73399,73888,73958,79182,92586,97916,107496,115798],"is_not":false,"summary":null,"term":"GO:0006369"},{"annotations":[111761],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1904595"},{"annotations":[101961,107263,97025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030847"}]},"cv_name":"biological_process","definition":"A transcription termination process that completes the production of a primary RNA polymerase II transcript.","definition_xrefs":["GOC:mah","GOC:txnOH","PMID:27371117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription termination","termid":"GO:0006353"},{"relation_name":"part_of","term_name":"transcription by RNA polymerase II","termid":"GO:0006366"}],"gene_count":12,"genes_by_uniquename":{"SJAG_01713":null,"SJAG_02037":null,"SJAG_02156":null,"SJAG_02242":null,"SJAG_03126":null,"SJAG_03179":null,"SJAG_03624":null,"SJAG_03689":null,"SJAG_03923":null,"SJAG_04006":null,"SJAG_04527":null,"SJAG_04942":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006351","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"termination of RNA polymerase II transcription","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0019224","Reactome:R-HSA-73856"],"synonyms":[{"name":"RNA 3'-end formation by RNA polymerase II","type":"exact"},{"name":"RNA polymerase II transcription termination","type":"exact"},{"name":"RNA polymerase II transcription termination factor activity","type":"related"},{"name":"transcription termination from Pol II promoter","type":"exact"},{"name":"transcription termination from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0006369","terms_by_termid":{"GO:0006369":null,"GO:0030847":null,"GO:1904595":null}}


id: GO:1901414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of tetrapyrrole biosynthetic process from glycine and succinyl-CoA.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of amide metabolic process","termid":"GO:0034249"},{"relation_name":"is_a","term_name":"negative regulation of amino acid metabolic process","termid":"GO:0045763"},{"relation_name":"is_a","term_name":"negative regulation of nucleobase-containing compound metabolic process","termid":"GO:0045934"},{"relation_name":"is_a","term_name":"negative regulation of phosphate metabolic process","termid":"GO:0045936"},{"relation_name":"is_a","term_name":"negative regulation of sulfur metabolic process","termid":"GO:0051175"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA","termid":"GO:1901413"},{"relation_name":"is_a","term_name":"negative regulation of tetrapyrrole biosynthetic process","termid":"GO:1901464"},{"relation_name":"negatively_regulates","term_name":"tetrapyrrole biosynthetic process from glycine and succinyl-CoA","termid":"GO:0033527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0033013"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"negatively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0033013"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0006790","GO:0008150","GO:0044281","GO:0033013","GO:0006520"],"is_obsolete":false,"name":"negative regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA","synonyms":[{"name":"down regulation of tetrapyrrole anabolism from glycine and succinyl-CoA","type":"exact"},{"name":"down regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA","type":"exact"},{"name":"down regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA","type":"exact"},{"name":"down regulation of tetrapyrrole formation from glycine and succinyl-CoA","type":"exact"},{"name":"down regulation of tetrapyrrole synthesis from glycine and succinyl-CoA","type":"exact"},{"name":"down-regulation of tetrapyrrole anabolism from glycine and succinyl-CoA","type":"exact"},{"name":"down-regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA","type":"exact"},{"name":"down-regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA","type":"exact"},{"name":"down-regulation of tetrapyrrole formation from glycine and succinyl-CoA","type":"exact"},{"name":"down-regulation of tetrapyrrole synthesis from glycine and succinyl-CoA","type":"exact"},{"name":"downregulation of tetrapyrrole anabolism from glycine and succinyl-CoA","type":"exact"},{"name":"downregulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA","type":"exact"},{"name":"downregulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA","type":"exact"},{"name":"downregulation of tetrapyrrole formation from glycine and succinyl-CoA","type":"exact"},{"name":"downregulation of tetrapyrrole synthesis from glycine and succinyl-CoA","type":"exact"},{"name":"inhibition of tetrapyrrole anabolism from glycine and succinyl-CoA","type":"exact"},{"name":"inhibition of tetrapyrrole biosynthesis from glycine and succinyl-CoA","type":"exact"},{"name":"inhibition of tetrapyrrole biosynthetic process from glycine and succinyl-CoA","type":"narrow"},{"name":"inhibition of tetrapyrrole formation from glycine and succinyl-CoA","type":"exact"},{"name":"inhibition of tetrapyrrole synthesis from glycine and succinyl-CoA","type":"exact"},{"name":"negative regulation of tetrapyrrole anabolism from glycine and succinyl-CoA","type":"exact"},{"name":"negative regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA","type":"exact"},{"name":"negative regulation of tetrapyrrole formation from glycine and succinyl-CoA","type":"exact"},{"name":"negative regulation of tetrapyrrole synthesis from glycine and succinyl-CoA","type":"exact"}],"termid":"GO:1901414"}


id: PR:O74748
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trs8502 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transport protein particle subunit trs85-2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1734.07c","synonyms":[{"name":"Spom972h-trs8502","type":"exact"},{"name":"TRAPP subunit trs85-2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74748"}


id: PBO:0111719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane protein involved in translation Mdm38","termid":"PBO:0111719"}


id: GO:0031148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one, also known as DIF-1, differentiation-inducing factor-1. DIF-1 is a secreted chlorinated molecule that controls cell fate during development of Dictyostelium cells.","definition_xrefs":["GOC:mah","PMID:10706822"],"direct_ancestors":[{"relation_name":"is_a","term_name":"1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one metabolic process","termid":"GO:0031147"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"DIF-1 biosynthetic process","synonyms":[{"name":"1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one anabolism","type":"exact"},{"name":"1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one biosynthesis","type":"exact"},{"name":"1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one biosynthetic process","type":"exact"},{"name":"1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one formation","type":"exact"},{"name":"1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one synthesis","type":"exact"},{"name":"DIF-1 biosynthesis","type":"exact"}],"termid":"GO:0031148"}


id: PBO:0002289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosyltransferase Imt1","termid":"PBO:0002289"}


id: GO:0052801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving bicyclic nitroimidazoles, imidazole derivatives with two rings and a nitro group attached to one ring.","definition_xrefs":["PMID:19039139","PMID:16387854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitroimidazole metabolic process","termid":"GO:0052802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bicyclic nitroimidazole metabolic process","synonyms":[{"name":"bicyclic nitroimidazole metabolism","type":"exact"}],"termid":"GO:0052801"}


id: MONDO:0000750
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tooth disease characterized by a localized collection of pus associated with a tooth.","definition_xrefs":["DOID:0060324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tooth disorder","termid":"MONDO:0006999"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dental abscess","secondary_identifiers":["MEDGEN:99235","SCTID:299709002","UMLS:C0518988"],"termid":"MONDO:0000750","xrefs":{"Monarch":{"xref_id":"0000750"}}}


id: MONDO:0005586
data:
  {"annotated_genes":["SJAG_03429","SJAG_03453","SJAG_03677"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86923],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014937"},{"annotations":[86485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009050"},{"annotations":[85639],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008097"}]},"cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the anatomic structures of the head and neck region. Representative examples of benign neoplasms include salivary gland pleomorphic adenoma and nasal cavity papilloma. Representative examples of malignant neoplasms include oral cavity squamous cell carcinoma, laryngeal squamous cell carcinoma, and salivary gland carcinoma.","definition_xrefs":["NCIT:C3077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03429":null,"SJAG_03453":null,"SJAG_03677":null},"genotype_count":0,"is_obsolete":false,"name":"head and neck neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:255055008","MEDGEN:6728","UMLS:C0018671","ICD9:239.89","EFO:0005950","ONCOTREE:HEADNECK"],"synonyms":[{"name":"craniocervical region neoplasm","type":"exact"},{"name":"craniocervical region neoplasm (disease)","type":"exact"},{"name":"craniocervical region tumor","type":"exact"},{"name":"craniocervical region tumour","type":"exact"},{"name":"head and neck neoplasm","type":"exact"},{"name":"head and neck neoplasm (excluding central nervous system)","type":"exact"},{"name":"head and neck tumor","type":"exact"},{"name":"head and neck tumour","type":"exact"},{"name":"neoplasm of craniocervical region","type":"exact"},{"name":"neoplasm of head and neck","type":"exact"},{"name":"neoplasm of the head and neck","type":"exact"},{"name":"tumor of craniocervical region","type":"exact"},{"name":"tumor of head and neck","type":"exact"},{"name":"tumor of the head and neck","type":"exact"},{"name":"tumour of craniocervical region","type":"exact"},{"name":"tumour of head and neck","type":"exact"},{"name":"tumour of the head and neck","type":"exact"}],"termid":"MONDO:0005586","terms_by_termid":{"MONDO:0008097":null,"MONDO:0009050":null,"MONDO:0014937":null},"xrefs":{"Monarch":{"xref_id":"0005586"}}}


id: PBO:0049324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIA subunit 1 like","termid":"PBO:0049324"}


id: GO:0140382
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: tryptamine + reduced acceptor + O2 = 4-hydroxytryptamine + acceptor + H2O.","definition_xrefs":["PMID:28763571"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"tryptamine 4-monooxygenase activity","secondary_identifiers":["RHEA:15865","EC:1.14.99.59"],"termid":"GO:0140382"}


id: PBO:0069126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 376, pseudogene","termid":"PBO:0069126"}


id: PBO:0061479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear respiratory factor 1","termid":"PBO:0061479"}


id: MONDO:0957997
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diabetes, deafness, developmental delay, and short stature syndrome","secondary_identifiers":["MEDGEN:1845412","OMIM:620651","UMLS:C5882732"],"termid":"MONDO:0957997","xrefs":{"Monarch":{"xref_id":"0957997"}}}


id: MOD:00215
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-serine residue to the polymer heparan sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.","definition_xrefs":["PubMed:3472204","RESID:AA0210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-serine","termid":"MOD:00002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","synonyms":[{"name":"heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","type":"exact"},{"name":"heparin","type":"exact"},{"name":"heparitin sulfate","type":"exact"},{"name":"poly[alpha-1,4-(2-sulfate D-glucopyranuronosyl)-beta-1,4-(2-sulfamino-2-deoxy-6-sulfate D-glucosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine","type":"exact"}],"termid":"MOD:00215"}


id: PBO:0077164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLE family member 5, transcriptional modulator","termid":"PBO:0077164"}


id: PBO:0045479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desmocollin 1","termid":"PBO:0045479"}


id: PBO:0041435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 9 open reading frame 24","termid":"PBO:0041435"}


id: PBO:0059165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane protein MPV17","termid":"PBO:0059165"}


id: GO:1905684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of plasma membrane repair.","definition_xrefs":["GOC:TermGenie","PMID:22940583","GO_REF:0000058","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of plasma membrane organization","termid":"GO:1903729"},{"relation_name":"regulates","term_name":"plasma membrane repair","termid":"GO:0001778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"regulation of plasma membrane repair","termid":"GO:1905684"}


id: MONDO:0005831
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tuberculosis of the lymph node.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrapulmonary tuberculosis","termid":"MONDO:0000368"},{"relation_name":"is_a","term_name":"lymph node disorder","termid":"MONDO:0004928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"lymph node tuberculosis","secondary_identifiers":["SCTID:10893003","UMLS:C0041316","NCIT:C26896","MEDGEN:11946","EFO:0007350","DOID:4889","MESH:D014388"],"synonyms":[{"name":"king's evil","type":"exact"},{"name":"lymph node tuberculosis","type":"exact"},{"name":"scrofula","type":"exact"},{"name":"tuberculous adenitis","type":"exact"},{"name":"tuberculous lymphadenopathy","type":"exact"}],"termid":"MONDO:0005831","xrefs":{"Monarch":{"xref_id":"0005831"}}}


id: GO:0046974
data:
  {"annotated_genes":["SJAG_04574"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140948"},{"annotations":[62695],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140949"},{"annotations":[110293],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140947"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 9) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 9). This reaction is the addition of up to three methyl groups to the lysine residue at position 9 of the histone H3 protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lysine N-methyltransferase activity","termid":"GO:0016279"},{"relation_name":"is_a","term_name":"histone H3 methyltransferase activity","termid":"GO:0140938"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008276"}],"interesting_parent_ids":["GO:0008276","GO:0140096","GO:0003824","GO:0016741","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"histone H3K9 methyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-427336","Reactome:R-HSA-427527"],"synonyms":[{"name":"histone H3K9 methylase activity","type":"exact"},{"name":"histone lysine N-methyltransferase activity (H3-K9 specific)","type":"exact"},{"name":"histone methylase activity (H3-K9 specific)","type":"exact"},{"name":"histone methyltransferase activity (H3-K9 specific)","type":"exact"},{"name":"histone-H3K9 methyltransferase activity","type":"exact"}],"termid":"GO:0046974","terms_by_termid":{"GO:0140947":null,"GO:0140948":null,"GO:0140949":null}}


id: PBO:0060436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NACA pseudogene 5","termid":"PBO:0060436"}


id: FYPO:0005639
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to iron ion starvation is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal RNA level during cellular response to iron ion starvation","synonyms":[{"name":"normal RNA accumulation during cellular response to iron ion starvation","type":"related"},{"name":"normal RNA level during cellular response to iron ion starvation during mitotic cell cycle","type":"related"},{"name":"normal RNA level during cellular response to iron ion starvation during vegetative growth","type":"exact"},{"name":"normal RNA level during cellular response to iron starvation","type":"exact"},{"name":"normal RNA level during iron ion starvation","type":"exact"},{"name":"normal mRNA level during cellular response to iron ion starvation","type":"narrow"},{"name":"normal transcript level during cellular response to iron ion starvation","type":"exact"}],"termid":"FYPO:0005639"}


id: GO:1990153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is maintained in a location in telomeric heterochromatin.","definition_xrefs":["PMID:21300781"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of protein location in cell","termid":"GO:0032507"},{"relation_name":"part_of","term_name":"protein localization to heterochromatin","termid":"GO:0097355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"maintenance of protein localization to heterochromatin","synonyms":[{"name":"maintenance of protein localisation to heterochromatin","type":"exact"},{"name":"maintenance of protein location in heterochromatin","type":"related"}],"termid":"GO:1990153"}


id: GO:0120322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A lipid modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to a target lipid.","definition_xrefs":["GOC:sp","PMID:34012115"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid modification","termid":"GO:0030258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"lipid modification by small protein conjugation","termid":"GO:0120322"}


id: MONDO:0044630
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rere-related neurodevelopmental syndrome (obsolete MONDO:0044630)","termid":"MONDO:0044630","xrefs":{"Monarch":{"xref_id":"0044630"}}}


id: PBO:0030914
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_response_to_chemical_stimulus_during_vegetative_growth","termid":"PBO:0030914"}


id: MONDO:1010643
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hemophilia B that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemophilia B, non-human animal","termid":"MONDO:1010075"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemophilia B, dog","secondary_identifiers":["OMIA:000438-9615"],"termid":"MONDO:1010643","xrefs":{"Monarch":{"xref_id":"1010643"}}}


id: SO:1000019
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transversion from cytidine to adenine.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine_to_purine_transversion","termid":"SO:1000018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C_to_A_transversion","synonyms":[{"name":"C to A transversion","type":"exact"}],"termid":"SO:1000019"}


id: PBO:0079794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 2 member A2","termid":"PBO:0079794"}


id: PBO:0002750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Niemann-Pick disease type C2 protein hE1 homolog (predicted)","termid":"PBO:0002750"}


id: MONDO:0030975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"premature ovarian failure 20","secondary_identifiers":["OMIM:619938","MEDGEN:1808256","UMLS:C5677011"],"synonyms":[{"name":"POF20","type":"exact"},{"name":"premature ovarian failure 20","type":"exact"}],"termid":"MONDO:0030975","xrefs":{"Monarch":{"xref_id":"0030975"}}}


id: MOD:01205
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3 hydrogen atom of a serine residue with a carbohydrate-like group composed of Hex1HexNAc1NeuAc2 linked through a glycosidic bond.","definition_xrefs":["PubMed:7949339","Unimod:160#S"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Hex1HexNAc1NeuAc2 glycosylated residue","termid":"MOD:00528"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"Hex1HexNAc1NeuAc2 O-glycosylated serine","synonyms":[{"name":"Hex(1)HexNAc(1)NeuAc(2)","type":"related"},{"name":"Hex1HexNAc1NeuAc2","type":"related"}],"termid":"MOD:01205"}


id: MONDO:0017755
data:
  {"annotated_genes":["SJAG_00938","SJAG_05213","SJAG_05194","SJAG_03363","SJAG_03785","SJAG_03011","SJAG_01344"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86288],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008822"},{"annotations":[86543],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011559"},{"annotations":[86728,86727],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030810"},{"annotations":[85632],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0031040"},{"annotations":[85060,85059,85058],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009380"},{"annotations":[86666],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011156"},{"annotations":[85298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011214"}]},"cv_name":"mondo","definition":"An instance of bilirubin metabolism disease that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of porphyrin metabolism","termid":"MONDO:0017754"},{"relation_name":"is_a","term_name":"bilirubin metabolism disease","termid":"MONDO:0024431"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00938":null,"SJAG_01344":null,"SJAG_03011":null,"SJAG_03363":null,"SJAG_03785":null,"SJAG_05194":null,"SJAG_05213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"inborn disorder of bilirubin metabolism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0349427","Orphanet:309816","GARD:21347","MEDGEN:1671515","icd11.foundation:1297666279"],"synonyms":[{"name":"bilirubin metabolism disorder","type":"related"},{"name":"disorder of bilirubin metabolism","type":"broad"},{"name":"disorder of bilirubin metabolism and excretion","type":"exact"},{"name":"hereditary bilirubin metabolism disease","type":"exact"},{"name":"inborn disorder of bilirubin metabolism and excretion","type":"exact"}],"termid":"MONDO:0017755","terms_by_termid":{"MONDO:0008822":null,"MONDO:0009380":null,"MONDO:0011156":null,"MONDO:0011214":null,"MONDO:0011559":null,"MONDO:0030810":null,"MONDO:0031040":null},"xrefs":{"Monarch":{"xref_id":"0017755"}}}


id: PBO:0065856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB13, member RAS oncogene family","termid":"PBO:0065856"}


id: GO:0018807
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA + H2O = 2,6-dihydroxycyclohexane-1-carboxyl-CoA.","definition_xrefs":["UM-BBD_reactionID:r0204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds","termid":"GO:0016822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"6-hydroxycyclohex-1-ene-1-carboxyl-CoA hydratase activity","secondary_identifiers":["RHEA:39651","EC:3.7.1.21"],"termid":"GO:0018807"}


id: PBO:0017857
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolysis rate of maltose to glucose is 14.5 (uM min-1 ml-2)","termid":"PBO:0017857"}


id: PBO:0070897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 5","termid":"PBO:0070897"}


id: GO:0030984
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a kininogen, a kinin precursor.","definition_xrefs":["GOC:mah","PMID:9520414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"kininogen binding","termid":"GO:0030984"}


id: PR:O14076
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mpp6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein UNK4.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPACUNK4.11c","synonyms":[{"name":"Spom972h-mpp6","type":"exact"}],"termid":"PR:O14076"}


id: PBO:0036374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eIF-5A-deoxyhypusine synthase Dys1 (predicted)","termid":"PBO:0036374"}


id: GO:0070808
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of Hulle cell development, a process that leads to the formation of Hulle cells. Hulle cells are specialized multinucleate cells that originate from a nest-like aggregation of hyphae during sexual development and serve as nurse cells to the developing cleistothecium, or fruiting body.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell development","termid":"GO:0060284"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"Hulle cell development","termid":"GO:0070792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of Hulle cell development","termid":"GO:0070808"}


id: PBO:0076163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfatase 1","termid":"PBO:0076163"}


id: PBO:0041105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BSN antisense RNA 1","termid":"PBO:0041105"}


id: MONDO:0003801
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A squamous cell intraepithelial neoplasia that involves the cornea.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"pre-malignant neoplasm","termid":"MONDO:0000611"},{"relation_name":"is_a","term_name":"cornea neoplasm","termid":"MONDO:0021238"},{"relation_name":"is_a","term_name":"squamous cell intraepithelial neoplasia","termid":"MONDO:0024475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"corneal intraepithelial neoplasm","secondary_identifiers":["MEDGEN:232396","DOID:6198","SCTID:420835009","NCIT:C6093","UMLS:C1333159"],"synonyms":[{"name":"cornea intraepithelial neoplasia","type":"exact"},{"name":"cornea squamous cell intraepithelial neoplasia","type":"exact"},{"name":"corneal intraepithelial neoplasia","type":"exact"},{"name":"intraepithelial neoplasia of cornea","type":"exact"},{"name":"intraepithelial neoplasia of the cornea","type":"exact"}],"termid":"MONDO:0003801","xrefs":{"Monarch":{"xref_id":"0003801"}}}


id: PBO:0048500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerophosphodiester phosphodiesterase 1","termid":"PBO:0048500"}


id: GO:0004161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dimethylallyl diphosphate + isopentenyl diphosphate = (2E)-geranyl diphosphate + diphosphate.","definition_xrefs":["RHEA:22408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyl diphosphate synthase activity","termid":"GO:0120531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016765"],"is_obsolete":false,"name":"dimethylallyltranstransferase activity","secondary_identifiers":["EC:2.5.1.1","MetaCyc:GPPSYN-RXN","Reactome:R-HSA-9717834","Reactome:R-HSA-191322"],"synonyms":[{"name":"(2E,6E)-farnesyl diphosphate synthetase activity","type":"related"},{"name":"DMAPP:IPP-dimethylallyltransferase activity","type":"related"},{"name":"dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallyltranstransferase activity","type":"related"},{"name":"dimethylallyltransferase activity","type":"exact"},{"name":"diprenyltransferase activity","type":"related"},{"name":"geranyl diphosphate synthase activity","type":"exact"},{"name":"geranyl pyrophosphate synthase activity","type":"related"},{"name":"geranyl pyrophosphate synthetase activity","type":"related"},{"name":"geranyl-diphosphate synthase activity","type":"related"},{"name":"trans-farnesyl pyrophosphate synthetase activity","type":"related"}],"termid":"GO:0004161"}


id: MONDO:0020848
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant osteopetrosis","termid":"MONDO:0020645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"osteopetrosis, autosomal dominant 3","secondary_identifiers":["UMLS:C4748197","OMIM:618107","MEDGEN:1648454"],"synonyms":[{"name":"OPTA3","type":"exact"},{"name":"OSTEOPETROSIS, autosomal dominant 3","type":"exact"}],"termid":"MONDO:0020848","xrefs":{"Monarch":{"xref_id":"0020848"}}}


id: MONDO:0010086
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Sudden infant death syndrome (SIDS) is the unexpected, sudden death of a child under age 1 which cannot be explained after a thorough investigation is conducted. Infants who are affected by the condition generally appear healthy with no suspicious signs and symptoms prior to the incident. It is the leading cause of death in infants age 1 to 12 months old. The exact underlying cause of SIDS is unknown; however, scientists suspect that it is likely a multifactorial condition (associated with the effects of multiple genes in combination with lifestyle and environmental factors). Although there is no guaranteed way to prevent SIDS, the American Academy of Pediatrics has a published list of recommendationsfor risk reduction. Please click on the link to access this resource.","gene_count":0,"genotype_count":0,"name":"obsolete sudden infant death syndrome (obsolete MONDO:0010086)","secondary_identifiers":["DOID:9007","ICD10WHO:R95","NCIT:C85173","OMIM:272120","ICD9:798.0","MedDRA:10042439","MESH:D013398","SCTID:51178009"],"synonyms":[{"name":"Crib death (context-dependent category)","type":"exact"},{"name":"SIDS","type":"exact"},{"name":"Sids","type":"related"},{"name":"cot death","type":"exact"},{"name":"cot death (context-dependent category)","type":"exact"},{"name":"crib death","type":"exact"},{"name":"sudden death of nonspecific cause in infancy","type":"exact"},{"name":"sudden infant death syndrome","type":"exact"},{"name":"sudden infant death syndrome (context-dependent category)","type":"exact"},{"name":"sudden infant death syndrome (finding)","type":"exact"},{"name":"sudden infant death syndrome NOS (context-dependent category)","type":"exact"},{"name":"sudden infant death syndrome, susceptibility to","type":"exact"}],"termid":"MONDO:0010086","xrefs":{"Monarch":{"xref_id":"0010086"}}}


id: GO:0090408
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of loading nitrate into the sieve tube or companion cell of the phloem for long distance transport from source to sink.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrate transmembrane transport","termid":"GO:0015706"},{"relation_name":"is_a","term_name":"phloem loading","termid":"GO:0110126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"phloem nitrate loading","termid":"GO:0090408"}


id: GO:0000017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of alpha-glucosides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Alpha-glucosides are glycosides in which the sugar group is a glucose residue, and the anomeric carbon of the bond is in an alpha configuration.","definition_xrefs":["PMID:9919658","GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucoside transport","termid":"GO:0042946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"alpha-glucoside transport","termid":"GO:0000017"}


id: MONDO:0003011
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A low grade carcinoma of the kidney characterized by the presence of tubules which are separated by mucinous stroma. Often the tubular structures have a spindle cell appearance. Patients are usually asymptomatic and occasionally they may present with hematuria or flank pain.","definition_xrefs":["NCIT:C39807"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal cell carcinoma","termid":"MONDO:0005086"},{"relation_name":"is_a","term_name":"renal tubule disorder","termid":"MONDO:0021568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005240"],"is_obsolete":false,"name":"mucinous tubular and spindle renal cell carcinoma","secondary_identifiers":["SCTID:764990003","GARD:21418","Orphanet:319322","ONCOTREE:MTSCC","UMLS:C4707257","DOID:4472","MEDGEN:1640204","ICDO:0000/0"],"synonyms":[{"name":"carcinoma, renal, tubular, malignant","type":"exact"},{"name":"mucinous tubular and spindle cell carcinoma of the kidney","type":"exact"},{"name":"mucinous tubular and spindle cell renal carcinoma","type":"exact"},{"name":"renal mucinous tubular spindle cell carcinoma","type":"related"}],"termid":"MONDO:0003011","xrefs":{"Monarch":{"xref_id":"0003011"}}}


id: PBO:0084312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Isopentenyl diphosphate:dimethylallyl diphosphate isomerase; catalyzes an essential activation step in the isoprenoid biosynthetic pathway; required for viability; isopentenyl diphosphate:dimethylallyl diphosphate isomerase is also known as IPP isomerase","termid":"PBO:0084312"}


id: PBO:0028448
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_substrate_specificity","termid":"PBO:0028448"}


id: PBO:0071271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL24 pseudogene 5","termid":"PBO:0071271"}


id: GO:0050212
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AH2 + O2 + progesterone = 11alpha-hydroxyprogesterone + A + H2O.","definition_xrefs":["RHEA:18205"],"direct_ancestors":[{"relation_name":"is_a","term_name":"progesterone monooxygenase activity","termid":"GO:0050214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"progesterone 11-alpha-monooxygenase activity","secondary_identifiers":["MetaCyc:PROGESTERONE-11-ALPHA-MONOOXYGENASE-RXN","EC:1.14.99.14","KEGG_REACTION:R02214"],"synonyms":[{"name":"progesterone 11-alpha-hydroxylase activity","type":"related"},{"name":"progesterone 11a-monooxygenase activity","type":"exact"},{"name":"progesterone 11alpha-hydroxylase activity","type":"related"},{"name":"progesterone 11alpha-monooxygenase activity","type":"related"},{"name":"progesterone,hydrogen-donor:oxygen oxidoreductase (11alpha-hydroxylating)","type":"related"}],"termid":"GO:0050212"}


id: MONDO:0008592
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tricho-dento-osseous dysplasia (TDO) belongs to the ectodermal dysplasias and is characterized by curly/kinky hair at birth, enamel hypoplasia with discolouration and molar taurodontism, increased overall bone mineral density (BMD) and increased thickness of the cortical bones of the skull.","definition_xrefs":["Orphanet:3352"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with increased bone density (obsolete MONDO:0019703)","termid":"MONDO:0019703"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"tricho-dento-osseous syndrome","secondary_identifiers":["GARD:7799","ICD9:759.89","DOID:0111565","MESH:C536549","NORD:1786","icd11.foundation:131993435","OMIM:190320","SCTID:38993008","MEDGEN:78555","UMLS:C0265333"],"synonyms":[{"name":"TDO","type":"exact"},{"name":"TDO syndrome","type":"exact"},{"name":"TDO syndrome 1","type":"related"},{"name":"TRICHODENTOOSSEOUS syndrome","type":"exact"},{"name":"Tricho Dento Osseous Syndrome","type":"exact"},{"name":"Tricho-dento-osseous syndrome 1","type":"related"},{"name":"enamel hypoplasia and hypocalcification with associated strikingly curly hair","type":"related"},{"name":"kinky or curly hair, dolichocephaly, enamel hypoplasia, increased dental caries, radial dense bones, and brittle nails","type":"related"},{"name":"trichodontoosseous syndrome","type":"exact"}],"termid":"MONDO:0008592","xrefs":{"Monarch":{"xref_id":"0008592"}}}


id: PBO:0044530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DACT3 antisense RNA 1","termid":"PBO:0044530"}


id: PBO:0042108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 181","termid":"PBO:0042108"}


id: PBO:0043128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIBAR1 divergent transcript","termid":"PBO:0043128"}


id: PR:O59677
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rsm23 gene.","definition_xrefs":["UniProtKB:O59677","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"37S ribosomal protein S23, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.15c","synonyms":[{"name":"Spom972h-rsm23","type":"exact"}],"termid":"PR:O59677"}


id: MONDO:1010851
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any glycogen storage disease that occurs in cats due to a mutation in the GAA gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycogen storage disease, non-human animal","termid":"MONDO:1011419"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogen storage disease, GAA-related, domestic cat","secondary_identifiers":["OMIA:000419-9685"],"synonyms":[{"name":"glycogen storage disease II, domestic cat","type":"related"}],"termid":"MONDO:1010851","xrefs":{"Monarch":{"xref_id":"1010851"}}}


id: PBO:0036459
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alternative transcript","termid":"PBO:0036459"}


id: PBO:0012233
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pombe AP-1-like gene","termid":"PBO:0012233"}


id: PBO:0054793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2207","termid":"PBO:0054793"}


id: MONDO:1011111
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cryptorchidism that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cryptorchidism, non-human animal","termid":"MONDO:1010275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptorchidism, horse","secondary_identifiers":["OMIA:000243-9796"],"termid":"MONDO:1011111","xrefs":{"Monarch":{"xref_id":"1011111"}}}


id: PBO:0059065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MOB family member 4, phocein","termid":"PBO:0059065"}


id: MONDO:0100301
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing capillary infantile hemangioma.","definition_xrefs":["MONDO:patterns/inherited_susceptibility"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemangioma, capillary infantile, susceptibility to","secondary_identifiers":["UMLS:C4016420","MEDGEN:864857"],"termid":"MONDO:0100301","xrefs":{"Monarch":{"xref_id":"0100301"}}}


id: SO:0001000
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Cytosolic 16S rRNA is an RNA component of the small subunit of cytosolic ribosomes in prokaryotes.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"cytosolic_rRNA_16S_gene","termid":"SO:0002237"},{"relation_name":"is_a","term_name":"cytosolic_SSU_rRNA","termid":"SO:0000650"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_16S_rRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/16S_ribosomal_RNA"],"synonyms":[{"name":"cytosolic 16S SSU RNA","type":"exact"},{"name":"cytosolic 16S rRNA","type":"related"},{"name":"cytosolic 16S ribosomal RNA","type":"exact"},{"name":"cytosolic rRNA 16S","type":"exact"}],"termid":"SO:0001000"}


id: GO:0010286
data:
  {"annotated_genes":["SJAG_03527","SJAG_04187"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104108,78732],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070370"}]},"cv_name":"biological_process","definition":"Any process that increases heat tolerance of an organism in response to high temperatures.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to heat","termid":"GO:0009408"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03527":null,"SJAG_04187":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"heat acclimation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"thermotolerance","type":"related"}],"termid":"GO:0010286","terms_by_termid":{"GO:0070370":null}}


id: GO:0062033
data:
  {"annotated_genes":["SJAG_01679","SJAG_02336","SJAG_01297","SJAG_04597","SJAG_00082","SJAG_02451","SJAG_03681","SJAG_04259","SJAG_03353","SJAG_00883","SJAG_02169","SJAG_03126"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99376,115709,107032,103681,111757,114072,90477,108054,113584],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902426"},{"annotations":[93959],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140499"},{"annotations":[94172,89749],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902846"}]},"cv_name":"biological_process","definition":"Any process that starts or increases the frequency, rate or extent of sister chromatid segregation during mitosis.","definition_xrefs":["PMID:12773390"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic sister chromatid segregation","termid":"GO:0033047"},{"relation_name":"is_a","term_name":"positive regulation of chromosome segregation","termid":"GO:0051984"},{"relation_name":"is_a","term_name":"positive regulation of chromosome organization","termid":"GO:2001252"},{"relation_name":"positively_regulates","term_name":"mitotic sister chromatid segregation","termid":"GO:0000070"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00883":null,"SJAG_01297":null,"SJAG_01679":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02451":null,"SJAG_03126":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04259":null,"SJAG_04597":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0000070"},{"rel_name":"regulates","termid":"GO:0000070"}],"interesting_parent_ids":["GO:0007049","GO:0000070","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mitotic sister chromatid segregation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0062033","terms_by_termid":{"GO:0140499":null,"GO:1902426":null,"GO:1902846":null}}


id: PBO:0082677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the EKC/KEOPS protein complex; EKC/KEOPS complex is required for t6A tRNA modification and telomeric TG1-3 recombination; may have role in transcription; other complex members are Kae1p, Gon7p, Bud32p, and Cgi121p","termid":"PBO:0082677"}


id: PBO:0071311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 34","termid":"PBO:0071311"}


id: PR:O94444
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S proteasome non-ATPase regulatory subunit 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01888","PANTHER:PTHR10223:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory subunit rpn10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC637.10c","secondary_identifiers":["UniProtKB:O94444"],"synonyms":[{"name":"Spom972h-PSMD4","type":"exact"}],"termid":"PR:O94444"}


id: FYPO:0003586
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which replication fork processing is abnormal. Replication fork processing is process in which a DNA replication fork that has stalled (due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes) is repaired and replication is restarted.","definition_xrefs":["PomBase:mah","GO:0031297"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA replication","termid":"FYPO:0000217"},{"relation_name":"is_a","term_name":"DNA metabolism phenotype during vegetative growth","termid":"FYPO:0001346"},{"relation_name":"is_a","term_name":"abnormal metabolic process during vegetative growth","termid":"FYPO:0001363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000293","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal replication fork processing","synonyms":[{"name":"abnormal HR-mediated fork restart","type":"related"},{"name":"abnormal collapsed replication fork processing","type":"exact"},{"name":"abnormal recovery from replication fork arrest","type":"exact"},{"name":"abnormal recovery from replication fork stalling","type":"exact"},{"name":"abnormal replication fork processing during mitotic cell cycle","type":"related"},{"name":"abnormal replication fork processing during vegetative growth","type":"exact"},{"name":"abnormal replication fork restart","type":"related"},{"name":"abnormal replication restart","type":"related"}],"termid":"FYPO:0003586"}


id: PBO:0042565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDKN1A antisense RNA 1","termid":"PBO:0042565"}


id: GO:0046063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dCMP, deoxycytidine monophosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside monophosphate metabolic process","termid":"GO:0009176"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide metabolic process","termid":"GO:0009219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"dCMP metabolic process","synonyms":[{"name":"dCMP metabolism","type":"exact"}],"termid":"GO:0046063"}


id: PATO:0002323
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A temporal distribution pattern of process occurrences within a regulation/reference process.","definition_xrefs":["PATOC:LC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality of a process","termid":"PATO:0002062"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"temporal distribution quality","termid":"PATO:0002323"}


id: FYPO:0005591
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of lysophosphatidylcholine measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased phospholipid level","termid":"FYPO:0001289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular lysophosphatidylcholine level","synonyms":[{"name":"decreased cellular lysophosphatidylcholine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular lysophosphatidylcholine level during vegetative growth","type":"exact"},{"name":"decreased lysophosphatidylcholine accumulation","type":"related"},{"name":"reduced cellular lysophosphatidylcholine level","type":"exact"}],"termid":"FYPO:0005591"}


id: MONDO:0024277
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"thrombocytopenia","termid":"MONDO:0002049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"neonatal thrombocytopenia","secondary_identifiers":["MEDGEN:526130","MESH:D054098","SCTID:82835005","UMLS:C0221028"],"synonyms":[{"name":"neonatal purpura","type":"related"},{"name":"neonatal thrombocytopenia","type":"exact"},{"name":"purpura of newborn","type":"related"}],"termid":"MONDO:0024277","xrefs":{"Monarch":{"xref_id":"0024277"}}}


id: PBO:0059158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallophosphoesterase domain containing 2","termid":"PBO:0059158"}


id: GO:0002000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the juxtaglomerular cells of the kidneys receive information about the amount of blood flowing through the arterioles and converts the information to a molecular signal.","definition_xrefs":["ISBN:0721643949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of mechanical stimulus","termid":"GO:0050982"},{"relation_name":"part_of","term_name":"renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure","termid":"GO:0001999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of renal blood flow","termid":"GO:0002000"}


id: GO:0014891
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process, occurring in striated muscle, that is characterized by a decrease in protein content, fiber diameter, force production and fatigue resistance in response to different conditions such as starvation, aging and disuse.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle adaptation","termid":"GO:0014888"},{"relation_name":"is_a","term_name":"muscle atrophy","termid":"GO:0014889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"striated muscle atrophy","termid":"GO:0014891"}


id: GO:0052473
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism stops, prevents, or reduces the frequency, rate or extent of the B-cell mediated immune response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by organism of symbiont B-cell mediated immune response (obsolete GO:0052473)","synonyms":[{"name":"negative regulation by organism of symbiont B-cell mediated immune response","type":"exact"}],"termid":"GO:0052473"}


id: PBO:0060816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-terminal EF-hand calcium binding protein 1","termid":"PBO:0060816"}


id: GO:0097136
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of members of the Bcl-2 family of anti- and proapoptotic regulators. Bcl-2 proteins respond to cues from various forms of intracellular stress, such as DNA damage or cytokine deprivation, and interact with opposing family members to determine whether or not the caspase proteolytic cascade should be unleashed.","definition_xrefs":["GOC:so","PMID:14634621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Bcl-2 family protein complex","termid":"GO:0097136"}


id: SO:0001640
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that encodes a RNase_MRP_RNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzymatic_RNA_gene","termid":"SO:0002180"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase_MRP_RNA_gene","synonyms":[{"name":"RNase MRP RNA gene","type":"related"}],"termid":"SO:0001640"}


id: GO:0072087
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the renal vesicle over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney epithelium development","termid":"GO:0072073"},{"relation_name":"part_of","term_name":"nephron epithelium development","termid":"GO:0072009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal vesicle development","termid":"GO:0072087"}


id: PBO:0083783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein involved in maturation of 18S rRNA; depletion leads to inhibited pre-rRNA processing and reduced polysome levels; localizes primarily to the nucleolus","termid":"PBO:0083783"}


id: PATO:0000177
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000177 physiological function (obsolete PATO:0000177)","termid":"PATO:0000177"}


id: GO:0043638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of puromycin, an aminonucleoside antibiotic that is a potent inhibitor of translation; produced by the bacterium Streptomyces alboniger.","definition_xrefs":["Wikipedia:Puromycin","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antibiotic biosynthetic process","termid":"GO:0017000"},{"relation_name":"is_a","term_name":"puromycin metabolic process","termid":"GO:0043637"},{"relation_name":"is_a","term_name":"purine ribonucleoside biosynthetic process","termid":"GO:0046129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"puromycin biosynthetic process","termid":"GO:0043638"}


id: GO:0060710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell-cell adhesion process in which the cells of the chorion fuse to the cells of the allantois.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion","termid":"GO:0098609"},{"relation_name":"part_of","term_name":"labyrinthine layer morphogenesis","termid":"GO:0060713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"chorio-allantoic fusion","termid":"GO:0060710"}


id: PBO:0078608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 62","termid":"PBO:0078608"}


id: PBO:0058993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTOR associated protein, LST8 homolog","termid":"PBO:0058993"}


id: GO:0043865
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of methionine from one side of a membrane to the other.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur amino acid transmembrane transporter activity","termid":"GO:0000099"},{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"methionine transmembrane transporter activity","secondary_identifiers":["GO:1990240"],"synonyms":[{"name":"methionine importer","type":"related"},{"name":"methionine importer activity","type":"narrow"},{"name":"methionine importing activity","type":"narrow"},{"name":"methionine-importing activity","type":"narrow"}],"termid":"GO:0043865"}


id: PBO:0002567
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"the sequence previously referred to as SPAC27D7.10c was a duplication caused by missassembly of the cosmid","termid":"PBO:0002567"}


id: SO:1000009
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Change of a pyrimidine nucleotide, C or T, into an other pyrimidine nucleotide, or change of a purine nucleotide, A or G, into an other purine nucleotide.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SNV","termid":"SO:0001483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transition","termid":"SO:1000009"}


id: PBO:0064060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 94","termid":"PBO:0064060"}


id: FYPO:0005819
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the neddylation of one or more specific proteins, or of specific protein sites, is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein modification during vegetative growth","termid":"FYPO:0000329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0002274","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein neddylation during vegetative growth","synonyms":[{"name":"abnormal protein neddylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005819"}


id: MONDO:0014857
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with or without anomalies of the brain, eye, or heart","secondary_identifiers":["UMLS:C4310772","EFO:0009645","GARD:17902","MEDGEN:934739","OMIM:616975","Orphanet:494344"],"synonyms":[{"name":"NEDBEH","type":"exact"},{"name":"neurodevelopmental disorder with or without anomalies of the brain, eye, or heart","type":"exact"},{"name":"neurodevelopmental disorder with or without anomalies of the brain, eye, or heart; NEDBEH","type":"exact"},{"name":"rere-related neurodevelopmental syndrome","type":"exact"}],"termid":"MONDO:0014857","xrefs":{"Monarch":{"xref_id":"0014857"}}}


id: GO:0050686
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of mRNA processing.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mRNA processing","termid":"GO:0050684"},{"relation_name":"is_a","term_name":"negative regulation of mRNA metabolic process","termid":"GO:1903312"},{"relation_name":"negatively_regulates","term_name":"mRNA processing","termid":"GO:0006397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"negatively_regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0008150","GO:0016071"],"is_obsolete":false,"name":"negative regulation of mRNA processing","synonyms":[{"name":"down regulation of mRNA processing","type":"exact"},{"name":"down-regulation of mRNA processing","type":"exact"},{"name":"downregulation of mRNA processing","type":"exact"},{"name":"inhibition of mRNA processing","type":"narrow"}],"termid":"GO:0050686"}


id: GO:0048702
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the neurocranium are generated and organized during the embryonic phase. The neurocranium is the portion of the vertebrate skull surrounding the brain.","definition_xrefs":["GOC:jid","PMID:16049113","GOC:dsf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"embryonic cranial skeleton morphogenesis","termid":"GO:0048701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic neurocranium morphogenesis","synonyms":[{"name":"embryonic braincase morphogenesis","type":"exact"},{"name":"embryonic chondrocranium morphogenesis","type":"exact"}],"termid":"GO:0048702"}


id: PBO:0091243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial D-glutamate cyclase Dgc1","termid":"PBO:0091243"}


id: GO:0098788
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The terminal swelling of an apical dendrite of a ciliated olfactory receptor neuron. Each knob gives rise to 5 to 20 long delicate nonmotile cilia, which extend into the mucus covering the sensory epithelium.","definition_xrefs":["PMID:20801626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendrite terminus","termid":"GO:0044292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dendritic knob","synonyms":[{"name":"apical dendritic knob","type":"exact"}],"termid":"GO:0098788"}


id: GO:0032462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein homooligomerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein oligomerization","termid":"GO:0032459"},{"relation_name":"regulates","term_name":"protein homooligomerization","termid":"GO:0051260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"regulation of protein homooligomerization","termid":"GO:0032462"}


id: PBO:0044081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centriolar satellite-associated tubulin polyglutamylase complex regulator 1","termid":"PBO:0044081"}


id: MONDO:0009997
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Roberts syndrome (obsolete MONDO:0009997)","termid":"MONDO:0009997","xrefs":{"Monarch":{"xref_id":"0009997"}}}


id: PBO:0058416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4785","termid":"PBO:0058416"}


id: FYPO:0007401
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is abnormal during anaphase of mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to kinetochore during mitotic M phase","termid":"FYPO:0008164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization to kinetochore during mitotic anaphase","synonyms":[{"name":"abnormal protein localisation to kinetochore during mitotic anaphase","type":"exact"},{"name":"abnormal protein localization to kinetochore during anaphase of mitosis","type":"exact"}],"termid":"FYPO:0007401"}


id: GO:0010698
data:
  {"annotated_genes":["SJAG_04179","SJAG_02920","SJAG_03045"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[69751,70207,75683],"is_not":false,"summary":null,"term":"GO:0010698"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of an acetyltransferase, an enzyme which catalyzes the transfer of an acetyl group to an acceptor molecule.","definition_xrefs":["GOC:tb","GOC:jp","PMID:23912279","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02920":null,"SJAG_03045":null,"SJAG_04179":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140677"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0030234","GO:0140677"],"is_obsolete":false,"name":"acetyltransferase activator activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"acetyltransferase stimulator activity","type":"exact"}],"termid":"GO:0010698","terms_by_termid":{"GO:0010698":null}}


id: MOD:00669
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue hydroxyl group with a octanoyloxy group.","definition_xrefs":["Unimod:426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"octanoylated residue","termid":"MOD:00666"},{"relation_name":"is_a","term_name":"O-acylated residue","termid":"MOD:00671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"O-octanoylated residue","synonyms":[{"name":"OOctRes","type":"exact"},{"name":"Octanoyl","type":"related"},{"name":"octanoyl","type":"related"}],"termid":"MOD:00669"}


id: PBO:0002826
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates pss1","termid":"PBO:0002826"}


id: PBO:0078427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (anticodon GCC) 4-1","termid":"PBO:0078427"}


id: MONDO:0013514
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hypotrichosis in which the cause of the disease is a mutation in the KRT74 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypotrichosis","termid":"MONDO:0003037"},{"relation_name":"is_a","term_name":"hypotrichosis simplex of the scalp","termid":"MONDO:0019575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypotrichosis 3","secondary_identifiers":["DOID:0110700","GARD:18094","MEDGEN:462782","OMIM:613981","UMLS:C3151432"],"synonyms":[{"name":"HTSS2","type":"exact"},{"name":"HYPT3","type":"exact"},{"name":"Htss2","type":"exact"},{"name":"KRT74 hypotrichosis","type":"exact"},{"name":"hypotrichosis 3","type":"exact"},{"name":"hypotrichosis caused by mutation in KRT74","type":"exact"},{"name":"hypotrichosis simplex of the scalp 2","type":"exact"},{"name":"hypotrichosis type 3","type":"exact"},{"name":"hypt3","type":"exact"}],"termid":"MONDO:0013514","xrefs":{"Monarch":{"xref_id":"0013514"}}}


id: MONDO:0700254
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Paraneoplastic syndrome that involves the digestive system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paraneoplastic syndrome","termid":"MONDO:0021073"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraneoplastic gastrointestinal syndrome","termid":"MONDO:0700254","xrefs":{"Monarch":{"xref_id":"0700254"}}}


id: PBO:0075161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 17","termid":"PBO:0075161"}


id: MOD:01170
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively forms a 2-ketoimine of pyruvicacid with a residue amino group.","definition_xrefs":["Unimod:422"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by chemical process","termid":"MOD:01156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvic acid iminylated residue","synonyms":[{"name":"N-pyruvic acid 2-iminyl","type":"related"},{"name":"PyruvicAcidIminyl","type":"related"}],"termid":"MOD:01170"}


id: PBO:0016926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein Mug99","termid":"PBO:0016926"}


id: GO:1901685
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving glutathione derivative.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"glutathione derivative metabolic process","synonyms":[{"name":"glutathione derivative metabolism","type":"exact"}],"termid":"GO:1901685"}


id: PBO:0041025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BPI fold containing family C","termid":"PBO:0041025"}


id: GO:0004215
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of peptide bonds, acting as an aminopeptidase (notably, cleaving Arg-Xaa bonds) as well as an endopeptidase.","definition_xrefs":["EC:3.4.22.16"],"gene_count":0,"genotype_count":0,"name":"obsolete cathepsin H activity (obsolete GO:0004215)","synonyms":[{"name":"N-benzoylarginine-beta-naphthylamide hydrolase activity","type":"related"},{"name":"aleurain activity","type":"related"},{"name":"benzoylarginine-naphthylamide (BANA) hydrolase activity","type":"related"},{"name":"cathepsin B3 activity","type":"related"},{"name":"cathepsin BA activity","type":"related"},{"name":"cathepsin Ba","type":"related"},{"name":"cathepsin H activity","type":"exact"}],"termid":"GO:0004215"}


id: PBO:0004960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. pombe specific DUF999 protein family 7","termid":"PBO:0004960"}


id: FYPO:0005216
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle pole body is normal (i.e. indistinguishable from wild type) during metaphase of mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to mitotic spindle pole body during mitosis","termid":"FYPO:0005709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to mitotic spindle pole body during metaphase","synonyms":[{"name":"normal protein localisation to mitotic spindle pole body during metaphase","type":"exact"},{"name":"normal protein localization to mitotic SPB during metaphase","type":"exact"},{"name":"normal protein localization to mitotic spindle pole body during mitotic metaphase","type":"exact"},{"name":"normal protein localization to spindle pole body during metaphase during vegetative growth","type":"exact"},{"name":"normal protein localization to spindle pole body during metaphase of mitosis","type":"exact"}],"termid":"FYPO:0005216"}


id: PBO:0003336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol-polyphosphate 5-phosphatase, synaptojanin homolog 2 (predicted)","termid":"PBO:0003336"}


id: PR:Q9UT70
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A trafficking protein particle complex subunit 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01316","PANTHER:PTHR23249:SF9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transport protein particle subunit bet5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3G9.16c","secondary_identifiers":["UniProtKB:Q9UT70"],"synonyms":[{"name":"Spom972h-TRAPPC1","type":"exact"}],"termid":"PR:Q9UT70"}


id: GO:0048256
data:
  {"annotated_genes":["SJAG_01832","SJAG_04183","SJAG_01044","SJAG_01648","SJAG_01173","SJAG_03994","SJAG_05237"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74044],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048257"},{"annotations":[74247,70990,78160,65923,72335,75438],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017108"}]},"cv_name":"molecular_function","definition":"Catalysis of the cleavage of a flap structure in DNA, but not other DNA structures; processes the ends of Okazaki fragments in lagging strand DNA synthesis.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA endonuclease activity","termid":"GO:0004520"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01044":null,"SJAG_01173":null,"SJAG_01648":null,"SJAG_01832":null,"SJAG_03994":null,"SJAG_04183":null,"SJAG_05237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0016788","GO:0003824","GO:0003674","GO:0016787","GO:0140097"],"is_obsolete":false,"name":"flap endonuclease activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0048256","terms_by_termid":{"GO:0017108":null,"GO:0048257":null}}


id: FYPO:0007884
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which Lms2-8 complex binding by a gene product (usually a protein) in a mutant does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PMID:33378677","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein complex binding","termid":"FYPO:0003591"},{"relation_name":"is_a","term_name":"abolished molecular function","termid":"FYPO:0005446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000702","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abolished Lsm2-8 complex binding","synonyms":[{"name":"Lsm2-8 complex binding abolished","type":"exact"}],"termid":"FYPO:0007884"}


id: PBO:0087480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of chromatin assembly factor I (CAF-1), with Rlf2p and Msi1p; chromatin assembly by CAF-1 is important for multiple processes including silencing at telomeres, mating type loci, and rDNA; maintenance of kinetochore structure, deactivation of the DNA damage checkpoint after DNA repair, chromatin dynamics during transcription; and repression of divergent transcription; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0087480"}


id: MOD:01257
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["PubMed:12716131","PubMed:14997490","Unimod:194#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"6-aminoquinolyl-N-hydroxysuccinimidyl carbamate","termid":"MOD:00547"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-aminoquinolyl-N-hydroxysuccinimidyl carbamate - site K","synonyms":[{"name":"6-aminoquinolyl-N-hydroxysuccinimidyl carbamate","type":"related"},{"name":"AccQTag","type":"related"}],"termid":"MOD:01257"}


id: GO:0102178
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4alpha-formyl-ergosta-7,24(241)-dien-3beta-ol + O2 + NADH = 4alpha-carboxy-ergosta-7,24(241)-dien-3beta-ol + NAD + H2O.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 4alpha-formyl-ergosta-7,24(241)-dien-3beta-ol-methyl oxidase activity (obsolete GO:0102178)","termid":"GO:0102178"}


id: PBO:0029398
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_nucleoplasm","termid":"PBO:0029398"}


id: GO:1905948
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + 3',5'-cyclic GMP(in) = ADP + phosphate + 3',5'-cyclic GMP(out).","definition_xrefs":["GOC:TermGenie","GO_REF:0000070","PMID:18310115"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanine nucleotide transmembrane transporter activity","termid":"GO:0001409"},{"relation_name":"is_a","term_name":"purine ribonucleotide transmembrane transporter activity","termid":"GO:0005346"},{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"ABC-type 3',5'-cyclic GMP transmembrane transporter activity","secondary_identifiers":["RHEA:66188"],"synonyms":[{"name":"3',5'-cyclic GMP transmembrane-transporting ATPase activity","type":"exact"},{"name":"ATP-dependent 3',5'-cyclic GMP transmembrane transporter activity","type":"exact"},{"name":"ATPase-coupled 3',5'-cyclic GMP transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled cGMP transmembrane transporter activity","type":"exact"}],"termid":"GO:1905948"}


id: MONDO:0009799
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pachydermoperiostosis (obsolete MONDO:0009799)","secondary_identifiers":["NANDO:1200642","NANDO:2100288","NANDO:2201004"],"termid":"MONDO:0009799","xrefs":{"Monarch":{"xref_id":"0009799"}}}


id: PBO:0048673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactosidase beta 1 like 3","termid":"PBO:0048673"}


id: PBO:0044727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/H-box helicase 11 like 16 (pseudogene)","termid":"PBO:0044727"}


id: PBO:0041456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 10 open reading frame 71","termid":"PBO:0041456"}


id: PBO:0079034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Val (anticodon AAC) 3-1","termid":"PBO:0079034"}


id: PBO:0070414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPA interacting protein","termid":"PBO:0070414"}


id: PBO:0001213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornithine cyclodeaminase family (predicted)","termid":"PBO:0001213"}


id: GO:0071695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure to attain its fully functional state.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental maturation","termid":"GO:0021700"},{"relation_name":"part_of","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anatomical structure maturation","termid":"GO:0071695"}


id: MONDO:0017166
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare tumor of salivary glands (obsolete MONDO:0017166)","secondary_identifiers":["Orphanet:276142"],"termid":"MONDO:0017166","xrefs":{"Monarch":{"xref_id":"0017166"}}}


id: MONDO:0011872
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Griscelli syndrome type 2 (GS2) is a rare, inherited condition that affects the skin, hair, and immune system. People with GS2 have unusually light skin and silver-colored hair. They are also prone to recurrent infections and develop an immune condition called hemophagocytic lymphohistiocytosis (HLH). HLH can damage organs and tissues throughout the body, causing life-threatening complications. GS2 is caused by changes (mutations) in the RAB27A gene and is inherited in an autosomal recessive manner. The only current treatment that can extend survival is stem cell transplantation (a bone marrow transplant). Untreated, most children with GS2 do not survive past early childhood.","direct_ancestors":[{"relation_name":"is_a","term_name":"constitutional neutropenia","termid":"MONDO:0015134"},{"relation_name":"is_a","term_name":"hereditary hemophagocytic lymphohistiocytosis","termid":"MONDO:0015541"},{"relation_name":"is_a","term_name":"Griscelli syndrome","termid":"MONDO:0018306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"Griscelli syndrome type 2","secondary_identifiers":["DOID:0060833","MEDGEN:357030","NCIT:C111814","icd11.foundation:1836541365","NANDO:2200732","Orphanet:79477","OMIM:607624","UMLS:C1868679","GARD:4483","MESH:C537302","ICD10CM:E70.3"],"synonyms":[{"name":"GS2","type":"exact"},{"name":"Griscelli disease type 2","type":"related"},{"name":"Griscelli syndrome type 2","type":"exact"},{"name":"Griscelli syndrome with hemophagocytic syndrome","type":"exact"},{"name":"Griscelli syndrome, type 2","type":"related"},{"name":"Griscelli-PruniC)ras syndrome type 2","type":"exact"},{"name":"Griscelli-Pruniéras syndrome type 2","type":"exact"},{"name":"Griscelli-Pruni��ras syndrome type 2","type":"exact"},{"name":"PAID syndrome","type":"exact"},{"name":"Paid syndrome","type":"related"},{"name":"hypopigmentation-immunodeficiency with or without neurologic impairment syndrome","type":"exact"},{"name":"partial albinism and immunodeficiency syndrome","type":"exact"}],"termid":"MONDO:0011872","xrefs":{"Monarch":{"xref_id":"0011872"}}}


id: MONDO:0018447
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An uncommon benign cartilaginous neoplasm arising from the bone. It is characterized by the presence of spindle-shaped or stellate chondrocytes, a lobulated growth pattern, myxoid stroma formation, and sometimes multinucleated giant cells. It has been associated with chromosomal rearrangement of 6q13 and 6q25 bands. The most common clinical symptom is mild, localized pain.","definition_xrefs":["NCIT:C3830"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone benign neoplasm","termid":"MONDO:0000631"},{"relation_name":"is_a","term_name":"benign chondrogenic neoplasm","termid":"MONDO:0024470"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondromyxoid fibroma","secondary_identifiers":["UMLS:C0221290","MEDGEN:66375","GARD:21720","EFO:0000332","ICDO:9241/0","Orphanet:404507"],"synonyms":[{"name":"Chondromyxoid fibroma","type":"exact"}],"termid":"MONDO:0018447","xrefs":{"Monarch":{"xref_id":"0018447"}}}


id: PR:000044734
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the cdc12 gene in Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division control protein 12 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC1F5.04c","synonyms":[{"name":"Spom-cdc12","type":"exact"}],"termid":"PR:000044734"}


id: MONDO:0008135
data:
  {"annotated_genes":["SJAG_03957"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85533],"is_not":false,"summary":null,"term":"MONDO:0008135"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary optic atrophy","termid":"MONDO:0043878"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03957":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"optic atrophy 13 with retinal and foveal abnormalities","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:165510","UMLS:C5435585","MEDGEN:1768962","MESH:C563494"],"synonyms":[{"name":"optic atrophy 13 with retinal and foveal abnormalities","type":"exact"},{"name":"optic atrophy with negative Electroretinograms","type":"exact"}],"termid":"MONDO:0008135","terms_by_termid":{"MONDO:0008135":null},"xrefs":{"Monarch":{"xref_id":"0008135"}}}


id: GO:0047126
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(5)-[1(S)-1-carboxyethyl]-L-ornithine + H2O + NADP+ = L-ornithine + H+ + NADPH + pyruvate.","definition_xrefs":["EC:1.5.1.24","RHEA:18661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"N5-(carboxyethyl)ornithine synthase activity","secondary_identifiers":["KEGG_REACTION:R00666","MetaCyc:1.5.1.24-RXN"],"synonyms":[{"name":"5-N-(L-1-carboxyethyl)-L-ornithine:NADP+ oxidoreductase (L-ornithine-forming)","type":"related"},{"name":"N5-(L-1-carboxyethyl)-L-ornithine:NADP+ oxidoreductase (L-ornithine-forming)","type":"related"}],"termid":"GO:0047126"}


id: MONDO:0005794
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Virus diseases caused by the herpesviridae.","definition_xrefs":["MESH:D006566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary viral infectious disease","termid":"MONDO:0100329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Herpesviridae infectious disease","secondary_identifiers":["SCTID:23513009","EFO:0007309"],"synonyms":[{"name":"Herpesviridae caused disease or disorder","type":"exact"},{"name":"Herpesviridae disease or disorder","type":"exact"},{"name":"Herpesviridae infection","type":"related"},{"name":"Herpesviridae infections","type":"exact"},{"name":"Herpesvirus infection","type":"related"},{"name":"Herpesvirus infections","type":"related"},{"name":"herpes infection","type":"related"},{"name":"herpesvirus infection","type":"exact"},{"name":"infection, Herpesviridae","type":"related"},{"name":"infection, Herpesvirus","type":"related"},{"name":"infections, Herpesviridae","type":"related"},{"name":"infections, Herpesvirus","type":"related"}],"termid":"MONDO:0005794","xrefs":{"Monarch":{"xref_id":"0005794"}}}


id: GO:0120046
data:
  {"annotated_genes":["SJAG_03602"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98215],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120047"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein localization to a medial cortical node.","definition_xrefs":["PMID:19474789"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to medial cortex","termid":"GO:0106011"},{"relation_name":"regulates","term_name":"protein localization to medial cortical node","termid":"GO:1902577"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03602":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein localization to medial cortical node","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120046","terms_by_termid":{"GO:0120047":null}}


id: PBO:0078784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 9-1","termid":"PBO:0078784"}


id: GO:0071965
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Locomotion in a multicellular organism, i.e. self-propelled movement of a multicellular organism from one location to another.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"locomotion","termid":"GO:0040011"},{"relation_name":"is_a","term_name":"multicellular organismal movement","termid":"GO:0050879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multicellular organismal locomotion","termid":"GO:0071965"}


id: GO:0004419
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA.","definition_xrefs":["RHEA:24404","EC:4.1.3.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"hydroxymethylglutaryl-CoA lyase activity","secondary_identifiers":["Reactome:R-HSA-6788597","KEGG_REACTION:R01360","MetaCyc:HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN","Reactome:R-HSA-74180"],"synonyms":[{"name":"(S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase (acetyl-CoA-forming)","type":"related"},{"name":"(S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase activity","type":"related"},{"name":"3-hydroxy-3-methylglutarate-CoA lyase activity","type":"related"},{"name":"3-hydroxy-3-methylglutaryl CoA cleaving enzyme","type":"related"},{"name":"3-hydroxy-3-methylglutaryl coenzyme A lyase activity","type":"related"},{"name":"3-hydroxy-3-methylglutaryl-CoA lyase activity","type":"related"},{"name":"HMG-CoA lyase activity","type":"related"},{"name":"hydroxymethylglutaryl coenzyme A lyase activity","type":"related"},{"name":"hydroxymethylglutaryl coenzyme A-cleaving enzyme","type":"related"}],"termid":"GO:0004419"}


id: PBO:0061235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP14 antisense RNA 1","termid":"PBO:0061235"}


id: PBO:0031557
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_catalytic_activity","termid":"PBO:0031557"}


id: PR:O59779
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1235.01 gene.","definition_xrefs":["UniProtKB:O59779","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1235.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.01","synonyms":[{"name":"Spom972h-SPCC1235.01","type":"exact"}],"termid":"PR:O59779"}


id: PBO:0058421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4790","termid":"PBO:0058421"}


id: GO:0002644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of tolerance induction.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tolerance induction","termid":"GO:0002643"},{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"tolerance induction","termid":"GO:0002507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of tolerance induction","synonyms":[{"name":"down regulation of tolerance induction","type":"exact"},{"name":"down-regulation of tolerance induction","type":"exact"},{"name":"downregulation of tolerance induction","type":"exact"},{"name":"inhibition of tolerance induction","type":"narrow"}],"termid":"GO:0002644"}


id: GO:0098616
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2SeO4 => diphosphate + adenylylselenate.","definition_xrefs":["PMID:2537056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016779","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"selenate adenylyltransferase (ATP) activity","secondary_identifiers":["Reactome:R-HSA-2408525"],"termid":"GO:0098616"}


id: GO:0106055
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of catalysing the hydrolysis of the terminal (1->2)-linked alpha-D-mannose residues in an oligo-mannose oligosaccharide.","definition_xrefs":["PMID:21700223","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum protein-containing complex","termid":"GO:0140534"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"endoplasmic reticulum lumen","termid":"GO:0005788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005783","GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"mannosyl-oligosaccharide 1,2-alpha-mannosidase complex","termid":"GO:0106055"}


id: GO:0075322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of oomycete sporangium development, a process that leads to the formation of oomycete sporangium, a single-celled or many-celled structure that germinates directly to form an infection hypha or differentiate, through specialized cleavage vesicles, into between 10 and 30 zoospores, which is laterally flagellated.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of asexual sporulation","termid":"GO:0034305"},{"relation_name":"is_a","term_name":"regulation of sporangium development","termid":"GO:0075310"},{"relation_name":"regulates","term_name":"oomycete sporangium development","termid":"GO:0075321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of oomycete sporangium development","termid":"GO:0075322"}


id: PBO:0074698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 70H","termid":"PBO:0074698"}


id: PBO:0066170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBIS pseudogene 3","termid":"PBO:0066170"}


id: PBO:0072342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 28","termid":"PBO:0072342"}


id: PBO:0088318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"La protein, tRNA chaperone Sla1","termid":"PBO:0088318"}


id: MONDO:0030500
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Loeys-Dietz syndrome","termid":"MONDO:0018954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Loeys-Dietz syndrome 6","secondary_identifiers":["OMIM:619656","UMLS:C5562041","MEDGEN:1794251","DOID:0060964"],"synonyms":[{"name":"LDS6","type":"exact"}],"termid":"MONDO:0030500","xrefs":{"Monarch":{"xref_id":"0030500"}}}


id: MONDO:0003888
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant testicular mixed germ cell neoplasm that occurs during childhood. It is characterized by the presence of embryonal carcinoma and teratoma components.","definition_xrefs":["NCIT:C6539"],"direct_ancestors":[{"relation_name":"is_a","term_name":"childhood testicular mixed germ cell cancer","termid":"MONDO:0003787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"childhood testicular mixed embryonal carcinoma and teratoma","secondary_identifiers":["UMLS:C1333008","DOID:6474","MEDGEN:234137"],"synonyms":[{"name":"childhood teratocarcinoma of testis","type":"related"},{"name":"childhood teratocarcinoma of the testis","type":"related"},{"name":"childhood testicular mixed embryonal carcinoma and teratoma","type":"exact"},{"name":"childhood testicular teratocarcinoma","type":"related"},{"name":"paediatric testicular teratocarcinoma","type":"exact"},{"name":"pediatric testicular teratocarcinoma","type":"exact"}],"termid":"MONDO:0003888","xrefs":{"Monarch":{"xref_id":"0003888"}}}


id: PBO:0034641
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_cell_tip,_with_protein_mislocalized_to_nucleus_and_spindle_pole_body","termid":"PBO:0034641"}


id: GO:1990609
data:
  {"annotated_genes":["SJAG_03494"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78396],"is_not":false,"summary":null,"term":"GO:1990609"}]},"cv_name":"molecular_function","definition":"Binds to and modulates the activity of glutamate-cysteine ligase.","definition_xrefs":["PMID:8103521"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase regulator activity","termid":"GO:0055103"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03494":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0030234","GO:0098772"],"is_obsolete":false,"name":"glutamate-cysteine ligase regulator activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:1990609","terms_by_termid":{"GO:1990609":null}}


id: GO:0003069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which acetylcholine signaling causes vasodilation, resulting in a change in blood pressure.","definition_xrefs":["GOC:rl","GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of systemic arterial blood pressure","termid":"GO:0003085"},{"relation_name":"is_a","term_name":"vasodilation","termid":"GO:0042311"},{"relation_name":"part_of","term_name":"regulation of systemic arterial blood pressure by acetylcholine","termid":"GO:0003068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetylcholine-mediated vasodilation involved in regulation of systemic arterial blood pressure","synonyms":[{"name":"vasodilation by acetylcholine involved in regulation of systemic arterial blood pressure","type":"exact"}],"termid":"GO:0003069"}


id: GO:0072368
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of lipid transport by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:mah","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:0072368)","synonyms":[{"name":"regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter","type":"exact"}],"termid":"GO:0072368"}


id: GO:1901151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of vistamycin.","definition_xrefs":["GOC:TermGenie","UniPathway:UPA00972","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycoside antibiotic catabolic process","termid":"GO:0030649"},{"relation_name":"is_a","term_name":"polyol catabolic process","termid":"GO:0046174"},{"relation_name":"is_a","term_name":"vistamycin metabolic process","termid":"GO:1901150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"vistamycin catabolic process","synonyms":[{"name":"ribostamycin breakdown","type":"exact"},{"name":"ribostamycin catabolic process","type":"exact"},{"name":"ribostamycin catabolism","type":"exact"},{"name":"ribostamycin degradation","type":"exact"},{"name":"vistamycin breakdown","type":"exact"},{"name":"vistamycin catabolism","type":"exact"},{"name":"vistamycin degradation","type":"exact"}],"termid":"GO:1901151"}


id: SO:0002387
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A 5' UTR variant which disrupts the translation of an upstream open reading frame because the number of nucleotides inserted or deleted is not a multiple of three.","direct_ancestors":[{"relation_name":"is_a","term_name":"5_prime_UTR_uORF_variant","termid":"SO:0002385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_prime_UTR_uORF_frameshift_variant","termid":"SO:0002387"}


id: GO:0016082
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that converts synaptic vesicles to a state of competence for calcium triggered fusion with the active zone membrane by bringing the two membranes into very close proximity. Priming typically (but not always) occurs after docking (Jahn and Fasshauer, 2012). Primed vesicles are also capable of spontaneously fusing with the active zone membrane.","definition_xrefs":["PMID:23060190","GOC:mah","PMID:15217342"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"is_a","term_name":"exocytic process","termid":"GO:0140029"},{"relation_name":"part_of","term_name":"synaptic vesicle exocytosis","termid":"GO:0016079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085","GO:0023052","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"synaptic vesicle priming","termid":"GO:0016082"}


id: GO:0072216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of metanephros development. Metanephros development is the process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is an organ that filters the blood and excretes the end products of body metabolism in the form of urine.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metanephros development","termid":"GO:0072215"},{"relation_name":"is_a","term_name":"positive regulation of kidney development","termid":"GO:0090184"},{"relation_name":"positively_regulates","term_name":"metanephros development","termid":"GO:0001656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of metanephros development","termid":"GO:0072216"}


id: MONDO:0001859
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"complex regional pain syndrome","termid":"MONDO:0019369"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"algoneurodystrophy","secondary_identifiers":["DOID:14022","ICD10CM:M89.0","UMLS:C0205930","ICD9:733.7","MEDGEN:526108"],"termid":"MONDO:0001859","xrefs":{"Monarch":{"xref_id":"0001859"}}}


id: GO:0044627
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that modulates the frequency, rate or extent of the classical pathway of complement activation, in a different organism.","definition_xrefs":["PMID:20837040","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of complement activation, classical pathway in another organism (obsolete GO:0044627)","synonyms":[{"name":"modulation of complement activation, classical pathway in other organism","type":"exact"},{"name":"regulation of complement activation, classical pathway in other organism","type":"exact"}],"termid":"GO:0044627"}


id: GO:0010215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall.","definition_xrefs":["PMID:12468730","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix organization","termid":"GO:0030198"},{"relation_name":"part_of","term_name":"plant-type cell wall assembly","termid":"GO:0071668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"cellulose microfibril organization","synonyms":[{"name":"cellulose microfibril organisation","type":"exact"}],"termid":"GO:0010215"}


id: MONDO:0018770
data:
  {"annotated_genes":["SJAG_01370"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86574],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054565"}]},"cv_name":"mondo","definition":"Jeune syndrome, also called asphyxiating thoracic dystrophy, is a short-rib dysplasia characterized by a narrow thorax, short limbs and radiological skeletal abnormalities including \\\"trident\\\" aspect of the acetabula and metaphyseal changes.","definition_xrefs":["Orphanet:474"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliopathy","termid":"MONDO:0005308"},{"relation_name":"is_a","term_name":"short rib-polydactyly syndrome","termid":"MONDO:0015461"},{"relation_name":"is_a","term_name":"inherited renal tubular disease","termid":"MONDO:0015962"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01370":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"Jeune syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C537571","OMIMPS:208500","MEDGEN:78548","MedDRA:10057621","UMLS:C0265275","DOID:0050592","icd11.foundation:554018956","GARD:3049","SCTID:75049004","NORD:1074","NCIT:C84794"],"synonyms":[{"name":"ATD","type":"related"},{"name":"Asphyxiating Thoracic Dystrophy","type":"exact"},{"name":"Chondroectodermal dysplasia-like syndrome","type":"related"},{"name":"JATD","type":"exact"},{"name":"Jeune asphyxiating thoracic dystrophy","type":"exact"},{"name":"Jeune syndrome","type":"exact"},{"name":"Jeune's syndrome","type":"related"},{"name":"asphyxiating thoracic dystrophy","type":"related"},{"name":"asphyxiating thoracic dystrophy of the newborn","type":"exact"},{"name":"infantile thoracic dystrophy","type":"related"},{"name":"short-rib thoracic dysplasia","type":"exact"},{"name":"short-rib thoracic dysplasia with or without polydactyly","type":"exact"},{"name":"thoracic pelvic phalangeal dystrophy","type":"exact"}],"termid":"MONDO:0018770","terms_by_termid":{"MONDO:0054565":null},"xrefs":{"Monarch":{"xref_id":"0018770"}}}


id: PBO:0073367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family I member 2","termid":"PBO:0073367"}


id: GO:0045282
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A multimeric complex which consists of flavoprotein (subunit A ; InterPro:IPR003952), iron-sulfur protein (subunit B) and membrane-bound cytochrome b560 (subunit C; InterPro:IPR000701). In some Archaea, the membrane-bound subunits (C or C and D) do not necessarily contain heme. Membrane-bound subunits can bind/react with quinones. Examples of this component are found in Bacterial species.","definition_xrefs":["InterPro:IPR000701","GOC:mtg_sensu","GOC:kd"],"gene_count":0,"genotype_count":0,"name":"obsolete plasma membrane succinate dehydrogenase complex (obsolete GO:0045282)","synonyms":[{"name":"succinate dehydrogenase complex","type":"broad"}],"termid":"GO:0045282"}


id: PR:Q09683
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A double-strand break repair protein MRE11A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10139:SF0","OMA:SCHPO00172","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rad32 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13C5.07","secondary_identifiers":["UniProtKB:Q09683"],"synonyms":[{"name":"Spom972h-MRE11A","type":"exact"}],"termid":"PR:Q09683"}


id: GO:0070353
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the zinc finger transcription factor GATA1, the LIM domain protein Lmo2 (RBTN2), the basic helix-loop-helix protein TAL1 and its binding partner TCF3. The complex is involved transcriptional regulation in hematopoiesis.","definition_xrefs":["PMID:7568177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"GATA1-TAL1-TCF3-Lmo2 complex","termid":"GO:0070353"}


id: MONDO:0013362
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THOC6-related developmental delay-microcephaly-facial dysmorphism syndrome","secondary_identifiers":["MEDGEN:462289","UMLS:C3150939","OMIM:613680","Orphanet:363444","GARD:17558"],"synonyms":[{"name":"BBIS","type":"exact"},{"name":"BEAULIEU-BOYCOTT-Innes syndrome","type":"related"},{"name":"Beaulieu-Boycott-Innes syndrome","type":"exact"},{"name":"microcephaly, intellectual disability, and distinctive facies, with Cardiac and genitourinary malformations","type":"related"},{"name":"microcephaly, mental retardation, and distinctive facies, with Cardiac and genitourinary malformations","type":"related"}],"termid":"MONDO:0013362","xrefs":{"Monarch":{"xref_id":"0013362"}}}


id: PBO:0066766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 64","termid":"PBO:0066766"}


id: PBO:0050500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox B13","termid":"PBO:0050500"}


id: PR:O74904
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 60S ribosomal protein L35 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L35 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC613.05c","secondary_identifiers":["UniProtKB:O74904"],"synonyms":[{"name":"Spom972h-RPL35","type":"exact"}],"termid":"PR:O74904"}


id: GO:0120199
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer segment of a vertebrate cone photoreceptor that contains membrane discs that are contiguous with the ciliary membrane and containing opsin photoreceptor proteins.","definition_xrefs":["PMID:26574505","GOC:pde","PMID:6771304","GOC:krc","PMID:19501669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photoreceptor outer segment","termid":"GO:0001750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cone photoreceptor outer segment","termid":"GO:0120199"}


id: GO:0019101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The determination of sex and sexual phenotypes in a female organism's soma.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatic sex determination","termid":"GO:0018993"},{"relation_name":"is_a","term_name":"female sex determination","termid":"GO:0030237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"female somatic sex determination","termid":"GO:0019101"}


id: PBO:0000152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-C2H2 type zinc finger protein","termid":"PBO:0000152"}


id: MONDO:0019730
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Light chain deposition disease (LCDD) is a rare condition characterized by the deposition of specific proteins (monoclonal light chains) in the kidneys and other organs. Light chains are used to make antibodies that the body needs to fight infection. People with LCDD make too many light chains, which get deposited in many body tissues. While LCDD can occur in any organ, the kidneys are always involved. Signs and symptoms of LCDD may include protein in the urine ; decreased kidney function; and/or nephrotic syndrome. Rarely, a person with LCDD may have symptoms from cardiac (heart) or liver involvement. The underlying cause of LCDD is unknown. It is often associated with multiple myeloma. LCDD may progress to multiple myeloma, or it may be present with multiple myeloma when it is first diagnosed. The goal of treating LCDD is to slow the production of light chains and their damage to organs. Treatment may include chemotherapy with a drug called Bortezomib ; autologous stem cell transplantation ; immunomodulatory drugs; and/or kidney transplant. If untreated, end-stage renal disease occurs in 70% of cases.","direct_ancestors":[{"relation_name":"is_a","term_name":"non-amyloid monoclonal immunoglobulin deposition disease","termid":"MONDO:0019463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"light chain deposition disease","secondary_identifiers":["icd11.foundation:1612001446","GARD:6906","MEDGEN:65953","NCIT:C7727","Orphanet:93558","SCTID:373604002","UMLS:C0238239"],"synonyms":[{"name":"Bence Jones myeloma","type":"exact"},{"name":"LCDD","type":"exact"},{"name":"Light chain disease","type":"exact"},{"name":"Light chain gammopathy","type":"exact"},{"name":"Light-chain deposition disease","type":"related"}],"termid":"MONDO:0019730","xrefs":{"Monarch":{"xref_id":"0019730"}}}


id: MONDO:0850066
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autoinflammatory syndrome","termid":"MONDO:0019751"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAMD9L-associated autoinflammatory syndrome","secondary_identifiers":["UMLS:C5680414","GARD:22463","Orphanet:619367","MEDGEN:1842521"],"termid":"MONDO:0850066","xrefs":{"Monarch":{"xref_id":"0850066"}}}


id: GO:0016615
data:
  {"annotated_genes":["SJAG_02176","SJAG_01753"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73726],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030060"},{"annotations":[72965],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004471"}]},"cv_name":"molecular_function","definition":"Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate.","definition_xrefs":["ISBN:0582227089","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01753":null,"SJAG_02176":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"malate dehydrogenase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0016615","terms_by_termid":{"GO:0004471":null,"GO:0030060":null}}


id: MONDO:1010965
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cauda equina syndrome that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cauda equina syndrome, non-human animal","termid":"MONDO:1010227"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cauda equina syndrome, dog","secondary_identifiers":["OMIA:000170-9615"],"termid":"MONDO:1010965","xrefs":{"Monarch":{"xref_id":"1010965"}}}


id: PR:O13830
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peptidyl-tRNA hydrolase 2, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01025","PANTHER:PTHR12649:SF6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-tRNA hydrolase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19A8.14","secondary_identifiers":["UniProtKB:O13830"],"synonyms":[{"name":"PTH 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PTRH2","type":"exact"}],"termid":"PR:O13830"}


id: MONDO:0000521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from the major or minor salivary glands. Representative examples include carcinoma ex pleomorphic adenoma, adenocarcinoma, adenoid cystic carcinoma, and mucoepidermoid carcinoma.","definition_xrefs":["NCIT:C9272"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland cancer","termid":"MONDO:0004669"},{"relation_name":"is_a","term_name":"oral cavity carcinoma","termid":"MONDO:0044925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"salivary gland carcinoma","secondary_identifiers":["UMLS:C0948750","MEDGEN:215302","DOID:0050904","ONCOTREE:SACA","NANDO:2200076"],"synonyms":[{"name":"carcinoma of saliva-secreting gland","type":"exact"},{"name":"carcinoma of salivary gland","type":"exact"},{"name":"carcinoma of the salivary gland","type":"exact"},{"name":"saliva-secreting gland carcinoma","type":"exact"},{"name":"salivary carcinoma","type":"related"},{"name":"salivary gland cancer","type":"broad"},{"name":"salivary gland carcinoma","type":"exact"}],"termid":"MONDO:0000521","xrefs":{"Monarch":{"xref_id":"0000521"}}}


id: GO:0010134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathway by which inorganic sulfate is activated, reduced and incorporated into sulfated compounds, where the activated sulfate, adenylyl-sulfate, is reduced to sulfite by the activity of adenylyl-sulfate reductase.","definition_xrefs":["MetaCyc:SULFMETII-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate assimilation","termid":"GO:0000103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"sulfate assimilation via adenylyl sulfate reduction","synonyms":[{"name":"sulphate assimilation via adenylyl sulphate reduction","type":"exact"}],"termid":"GO:0010134"}


id: PBO:0071932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 9","termid":"PBO:0071932"}


id: PBO:0073401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET pseudogene 4","termid":"PBO:0073401"}


id: PBO:0065832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB7B, member RAS oncogene family","termid":"PBO:0065832"}


id: PBO:0081679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 600","termid":"PBO:0081679"}


id: FYPO:0004955
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of phosphatidylinositol-3-phosphate binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased phosphatidylinositol binding","termid":"FYPO:0008328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"decreased phosphatidylinositol-3-phosphate binding","synonyms":[{"name":"decreased PtdIns-3-P binding","type":"exact"},{"name":"decreased phosphatidylinositol 3-phosphate binding","type":"exact"},{"name":"reduced phosphatidylinositol-3-phosphate binding","type":"exact"}],"termid":"FYPO:0004955"}


id: FYPO:0004522
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that is elongated and branched (and septated) and is curved along the long axis, and undergoes one or two rounds of cell division and then dies.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, single or double cell division, branched, elongated cell","termid":"FYPO:0004521"},{"relation_name":"is_a","term_name":"inviable after spore germination, single or double cell division, curved, elongated cell","termid":"FYPO:0004523"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0000004","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"inviable after spore germination, single or double cell division, branched, curved, elongated cell","synonyms":[{"name":"inviable after spore germination, single or double cell division, elongated, curved and branched cell","type":"exact"},{"name":"inviable following spore germination, single or double cell division, branched, curved, elongated cell","type":"exact"},{"name":"inviable germinated spore, single or double cell division, branched, curved, elongated cell","type":"exact"},{"name":"lethal after spore germination, single or double cell division, branched, curved, elongated cell","type":"exact"}],"termid":"FYPO:0004522"}


id: PBO:0076592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 13","termid":"PBO:0076592"}


id: GO:0002331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Expression of a single heavy chain allele during pre-B cell differentiation.","definition_xrefs":["GOC:add","GOC:jal","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gene expression","termid":"GO:0010468"},{"relation_name":"part_of","term_name":"pre-B cell differentiation","termid":"GO:0002329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"pre-B cell allelic exclusion","synonyms":[{"name":"pre-B lymphocyte allelic exclusion","type":"exact"}],"termid":"GO:0002331"}


id: MOD:01589
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-(2,4-diacetamido-2,4-dideoxyglucosyl)-L-serine.","definition_xrefs":["PubMed:15249686","PubMed:16949362","RESID:AA0499"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-serine","termid":"MOD:00002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-(2,4-diacetamido-2,4-dideoxyglucosyl)-L-serine","synonyms":[{"name":"(2S)-2-amino-3-[(2,4-diacetamido-2,4-dideoxy-beta-D-glucopyranosyl)oxy]propanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (DADDGlc) serine","type":"exact"},{"name":"DADDGlc","type":"exact"},{"name":"O-(2,4-diacetamido-2,4-dideoxy-D-glucosyl)-L-serine","type":"exact"},{"name":"O-(2,4-diacetamido-2,4-dideoxy-beta-D-glucopyranosyl)-L-serine","type":"exact"},{"name":"O-[2,4-bis(acetylamino)]glucosyl-L-serine","type":"exact"},{"name":"O-seryl-beta-2,4-bis(acetylamino)glucoside","type":"exact"},{"name":"O3-(2,4-diacetamido-2,4-dideoxy-beta-D-glucopyranosyl)-L-serine","type":"exact"}],"termid":"MOD:01589"}


id: GO:0006603
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phosphocreatine, a phosphagen of creatine present in high concentration in striated muscle which is synthesized and broken down by creatine phosphokinase to buffer ATP concentration. It acts as an immediate energy reserve for muscle.","definition_xrefs":["PMID:16371597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphagen metabolic process","termid":"GO:0006599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phosphocreatine metabolic process","synonyms":[{"name":"phosphocreatine metabolism","type":"exact"}],"termid":"GO:0006603"}


id: PBO:0045261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DND microRNA-mediated repression inhibitor 1 pseudogene 1","termid":"PBO:0045261"}


id: GO:0018395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydroxylation of peptidyl-lysine to peptidyl-5-hydroxy-L-lysine.","definition_xrefs":["RESID:AA0028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine hydroxylation","termid":"GO:0017185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine","termid":"GO:0018395"}


id: PBO:0040362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP5MK pseudogene 1","termid":"PBO:0040362"}


id: FYPO:0001576
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing a dipeptide such as Leu-Ala as the nitrogen source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0005447","FYPO:0002058","FYPO:0002060"],"is_obsolete":false,"name":"abolished cell population growth on dipeptide nitrogen source","synonyms":[{"name":"abolished dipeptide utilization","type":"related"},{"name":"abolished vegetative cell population growth on dipeptide nitrogen source","type":"exact"},{"name":"cell population growth on dipeptide nitrogen source abolished","type":"exact"}],"termid":"FYPO:0001576"}


id: GO:2000640
data:
  {"annotated_genes":["SJAG_01150"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78126],"is_not":false,"summary":null,"term":"GO:2000640"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the SREBP signaling pathway.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"is_a","term_name":"regulation of SREBP signaling pathway","termid":"GO:2000638"},{"relation_name":"positively_regulates","term_name":"SREBP signaling pathway","termid":"GO:0032933"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01150":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of SREBP signaling pathway","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"positive regulation of SREBP-mediated signaling pathway","type":"exact"},{"name":"positive regulation of SREBP-mediated signalling pathway","type":"exact"}],"termid":"GO:2000640","terms_by_termid":{"GO:2000640":null}}


id: PBO:0071285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 8","termid":"PBO:0071285"}


id: GO:0150013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of the process in which the anatomical structures of a neuron projection are generated and organized into branches.","definition_xrefs":["PMID:17114044","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell projection organization","termid":"GO:0031345"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of neuron projection arborization","termid":"GO:0150011"},{"relation_name":"negatively_regulates","term_name":"neuron projection arborization","termid":"GO:0140058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neuron projection arborization","synonyms":[{"name":"negative regulation of neurite arborization","type":"exact"},{"name":"negative regulation of neurite branching","type":"exact"},{"name":"negative regulation of neuron projection branching","type":"exact"}],"termid":"GO:0150013"}


id: PATO:0002011
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neoplastic","synonyms":[{"name":"tumorous","type":"exact"}],"termid":"PATO:0002011"}


id: PBO:0004059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein Ucp3 (predicted)","termid":"PBO:0004059"}


id: GO:0052066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The invasion by a symbiont of a host organism cell by utilizing the host phagocytosis mechanism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete entry of symbiont into host cell by promotion of host phagocytosis (obsolete GO:0052066)","synonyms":[{"name":"entry of organism into cell of other organism by promotion of phagocytosis in other organism during symbiotic interaction","type":"related"},{"name":"entry of organism into cell of other organism by promotion of phagocytosis in other organism involved in symbiotic interaction","type":"related"},{"name":"entry of organism into host cell by promotion of host phagocytosis","type":"exact"},{"name":"penetration of organism into host cell by promotion of host phagocytosis","type":"exact"},{"name":"penetration of symbiont into host cell by promotion of host phagocytosis","type":"exact"}],"termid":"GO:0052066"}


id: PBO:0054127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1493","termid":"PBO:0054127"}


id: MONDO:8000014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant form of antiphospholipid syndrome.","definition_xrefs":["MONDO:patterns/autosomal_dominant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"antiphospholipid syndrome","termid":"MONDO:8000010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005046"],"is_obsolete":false,"name":"familial antiphospholipid syndrome","secondary_identifiers":["UMLS:C2930802","MEDGEN:419641","MESH:C531622","OMIM:107320"],"synonyms":[{"name":"Hughes syndrome","type":"broad"},{"name":"antiphospholipid syndrome, familial","type":"exact"}],"termid":"MONDO:8000014","xrefs":{"Monarch":{"xref_id":"8000014"}}}


id: PBO:0089883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 Mms2","termid":"PBO:0089883"}


id: SO:0000052
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000052 assortment_derived_deficiency (obsolete SO:0000052)","synonyms":[{"name":"assortment-derived_deficiency","type":"related"}],"termid":"SO:0000052"}


id: PBO:0077205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane 4 L six family member 20","termid":"PBO:0077205"}


id: MONDO:0003530
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete aggressive digital papillary adenocarcinoma (obsolete MONDO:0003530)","termid":"MONDO:0003530","xrefs":{"Monarch":{"xref_id":"0003530"}}}


id: FYPO:0000897
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial fission, the division of a mitochondrion into two or more separate compartments, is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","GO:0000266"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal mitochondrial fission","synonyms":[{"name":"normal mitochondrial division","type":"exact"},{"name":"normal mitochondrial fission during mitotic cell cycle","type":"related"},{"name":"normal mitochondrial fission during vegetative growth","type":"exact"},{"name":"normal mitochondrial proliferation","type":"related"}],"termid":"FYPO:0000897"}


id: GO:1905705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a paclitaxel stimulus.","definition_xrefs":["PMID:18472094","GO_REF:0000071","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular response to paclitaxel (obsolete GO:1905705)","termid":"GO:1905705"}


id: PBO:0027297
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-fragmented_septum","termid":"PBO:0027297"}


id: PR:O94458
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1687.17c gene.","definition_xrefs":["UniProtKB:O94458","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized derlin-like protein C1687.17c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.17c","synonyms":[{"name":"Spom972h-SPAC1687.17c","type":"exact"}],"termid":"PR:O94458"}


id: PBO:0071020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 22","termid":"PBO:0071020"}


id: MONDO:0004737
data:
  {"annotated_genes":["SJAG_01880","SJAG_04042","SJAG_03712","SJAG_01466","SJAG_04459","SJAG_01199","SJAG_04425","SJAG_00582"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85082,85081],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009352"},{"annotations":[85026,85025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009353"},{"annotations":[85002,85003],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009354"},{"annotations":[85614],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009609"},{"annotations":[86434],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010184"}]},"cv_name":"mondo","definition":"An autosomal recessive inherited metabolic disorder caused by mutations in the CBS, MTHFR, MTR, and MTRR genes. It is characterized by abnormalities in the methionine metabolism and is associated with deficiency of cystathionine synthase. It results in the accumulation of homocysteine in the serum. It may affect the cardiovascular, musculoskeletal and the central nervous systems.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of amino acid metabolism","termid":"MONDO:0004736"},{"relation_name":"is_a","term_name":"inborn disorder of methionine cycle and sulfur amino acid metabolism","termid":"MONDO:0019222"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00582":null,"SJAG_01199":null,"SJAG_01466":null,"SJAG_01880":null,"SJAG_03712":null,"SJAG_04042":null,"SJAG_04425":null,"SJAG_04459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"homocystinuria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:42485","NANDO:1201038","SCTID:11282001","GARD:10770","MESH:D006712","HP:0002156","NCIT:C84765","UMLS:C0019880","NANDO:2200474","ICD10CM:E72.11","DOID:9263"],"synonyms":[{"name":"CBS deficiency","type":"narrow"},{"name":"cystathionine beta synthase deficiency","type":"narrow"},{"name":"cystathionine synthase deficiency","type":"narrow"},{"name":"homocystinuria","type":"exact"},{"name":"homocystinuria (disease)","type":"exact"}],"termid":"MONDO:0004737","terms_by_termid":{"MONDO:0009352":null,"MONDO:0009353":null,"MONDO:0009354":null,"MONDO:0009609":null,"MONDO:0010184":null},"xrefs":{"Monarch":{"xref_id":"0004737"}}}


id: MONDO:0021298
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A in situ carcinoma that involves the oropharynx.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pharynx carcinoma in situ","termid":"MONDO:0000372"},{"relation_name":"is_a","term_name":"oropharyngeal carcinoma","termid":"MONDO:0044926"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"carcinoma in situ of oropharynx","secondary_identifiers":["UMLS:C0347099","MEDGEN:83852","SCTID:92668003","icd11.foundation:364791852","NCIT:C4590"],"synonyms":[{"name":"carcinoma in situ of oropharynx","type":"exact"},{"name":"carcinoma in situ of the oropharynx","type":"exact"},{"name":"oropharyngeal cancer stage 0","type":"exact"},{"name":"oropharyngeal carcinoma in situ","type":"exact"},{"name":"oropharynx carcinoma in situ","type":"exact"},{"name":"oropharynx in situ carcinoma","type":"exact"},{"name":"stage 0 carcinoma of oropharynx","type":"exact"},{"name":"stage 0 carcinoma of the oropharynx","type":"exact"},{"name":"stage 0 oropharyngeal cancer","type":"exact"},{"name":"stage 0 oropharyngeal carcinoma","type":"exact"},{"name":"stage 0 oropharyngeal carcinoma aJCC v6","type":"exact"},{"name":"stage 0 oropharyngeal carcinoma aJCC v6 and v7","type":"exact"},{"name":"stage 0 oropharyngeal carcinoma aJCC v7","type":"exact"},{"name":"stage 0 oropharyngeal carcinoma in situ","type":"exact"},{"name":"stage 0 oropharyngeal throat cancer","type":"exact"},{"name":"stage 0 oropharynx carcinoma","type":"exact"}],"termid":"MONDO:0021298","xrefs":{"Monarch":{"xref_id":"0021298"}}}


id: MONDO:0007911
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipoprotein, variant of beta","secondary_identifiers":["UMLS:C1835357","MEDGEN:322642","OMIM:152400"],"synonyms":[{"name":"Beta-lipoprotein, Double","type":"related"},{"name":"lipoprotein, variant of beta","type":"exact"}],"termid":"MONDO:0007911","xrefs":{"Monarch":{"xref_id":"0007911"}}}


id: PBO:0108613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acidic nuclear phosphoprotein 32 family member C, pseudogene","termid":"PBO:0108613"}


id: PBO:0044381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 1 subfamily D member 1, pseudogene","termid":"PBO:0044381"}


id: MONDO:0018709
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked intellectual disability-hypotonia-movement disorder syndrome","secondary_identifiers":["Orphanet:457260","UMLS:C5681121","GARD:12715","MEDGEN:1814468"],"termid":"MONDO:0018709","xrefs":{"Monarch":{"xref_id":"0018709"}}}


id: PBO:0052623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 2","termid":"PBO:0052623"}


id: GO:0031853
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a nociceptin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"opioid receptor binding","termid":"GO:0031628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"nociceptin receptor binding","synonyms":[{"name":"nociceptin receptor ligand","type":"narrow"}],"termid":"GO:0031853"}


id: PBO:0016073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"medial cortical node protein Nod1","termid":"PBO:0016073"}


id: GO:0019493
data:
  {"annotated_genes":["SJAG_00495","SJAG_03398"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78046,113009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010121"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including proline.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine catabolic process","termid":"GO:0006527"},{"relation_name":"is_a","term_name":"proline metabolic process","termid":"GO:0006560"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00495":null,"SJAG_03398":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044248","GO:0044281"],"is_obsolete":false,"name":"arginine catabolic process to proline","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ARG-PRO-PWY"],"synonyms":[{"name":"arginine breakdown to proline","type":"exact"},{"name":"arginine degradation to proline","type":"exact"}],"termid":"GO:0019493","terms_by_termid":{"GO:0010121":null}}


id: GO:0016682
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a diphenol, or related compound, acts as a hydrogen or electron donor and reduces oxygen.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on diphenols and related substances as donors","termid":"GO:0016679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor","secondary_identifiers":["EC:1.10.3.-"],"synonyms":[{"name":"laccase activity","type":"related"}],"termid":"GO:0016682"}


id: GO:0120248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an acetylenic compound, any compound which contains a carbon-carbon triple bond (aka C#C).","definition_xrefs":["DOI:10.1007/978-1-4615-4913-0_3","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"acetylenic compound metabolic process","termid":"GO:0120246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetylenic compound catabolic process","synonyms":[{"name":"alkyne substituted compound breakdown","type":"exact"},{"name":"alkyne substituted compound catabolic process","type":"exact"},{"name":"alkyne substituted compound catabolism","type":"exact"},{"name":"alkyne substituted compound degradation","type":"exact"}],"termid":"GO:0120248"}


id: GO:0035442
data:
  {"annotated_genes":["SJAG_02139","SJAG_05182","SJAG_01983"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118155,118156],"is_not":false,"summary":null,"term":"GO:0035442"},{"annotations":[71585],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140206"}]},"cv_name":"biological_process","definition":"The directed movement of a dipeptide across a membrane by means of some agent such as a transporter or pore. A dipeptide is a combination of two amino acids linked together by a peptide (-CO-NH-) bond.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligopeptide transmembrane transport","termid":"GO:0035672"},{"relation_name":"is_a","term_name":"dipeptide transport","termid":"GO:0042938"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01983":null,"SJAG_02139":null,"SJAG_05182":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"dipeptide transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"dipeptide membrane transport","type":"exact"}],"termid":"GO:0035442","terms_by_termid":{"GO:0035442":null,"GO:0140206":null}}


id: PR:Q10585
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- spd1 gene.","definition_xrefs":["UniProtKB:Q10585","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-phase delaying protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29B12.03","synonyms":[{"name":"Spom972h-spd1","type":"exact"},{"name":"protein p14 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10585"}


id: PBO:0082211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha-1,6-mannosyltransferase localized to the ER; responsible for addition of alpha-1,6 mannose to dolichol-linked Man7GlcNAc2; acts in the dolichol pathway for N-glycosylation; human homolog ALG12 complements yeast null mutant","termid":"PBO:0082211"}


id: GO:0046712
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of GDP, guanosine 5'-diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide catabolic process","termid":"GO:0009154"},{"relation_name":"is_a","term_name":"purine ribonucleoside diphosphate catabolic process","termid":"GO:0009181"},{"relation_name":"is_a","term_name":"GDP metabolic process","termid":"GO:0046710"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"GDP catabolic process","synonyms":[{"name":"GDP breakdown","type":"exact"},{"name":"GDP catabolism","type":"exact"},{"name":"GDP degradation","type":"exact"}],"termid":"GO:0046712"}


id: PBO:0083833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Eukaryotic initiation factor eIF2A; associates specifically with both 40S subunits and 80 S ribosomes, and interacts genetically with both eIF5b and eIF4E; homologous to mammalian eIF2A","termid":"PBO:0083833"}


id: PBO:0030737
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_cycle_arrest_in_mitotic_G1_phase_during_nitrogen_starvation","termid":"PBO:0030737"}


id: PBO:0085067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nonfunctional homolog of Gpm1p phosphoglycerate mutase; if functional, would convert 3-phosphoglycerate to 2-phosphoglycerate in glycolysis; GPM2 has a paralog, GPM3, that arose from the whole genome duplication","termid":"PBO:0085067"}


id: MONDO:1011279
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Age-related macular degeneration that occurs in Rhesus monkey.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"age-related macular degeneration, non-human animal","termid":"MONDO:1010351"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"age-related macular degeneration, Rhesus monkey","secondary_identifiers":["OMIA:002142-9544"],"termid":"MONDO:1011279","xrefs":{"Monarch":{"xref_id":"1011279"}}}


id: PBO:0085545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; overproduction suppresses mutations affecting RNA polymerase III-dependent transcription; homologous to mammalian ribosomal protein S20 and bacterial S10","termid":"PBO:0085545"}


id: PBO:0031681
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_peroxisome_degradation","termid":"PBO:0031681"}


id: GO:0051261
data:
  {"annotated_genes":["SJAG_01894","SJAG_02624","SJAG_04841","SJAG_01993","SJAG_03380","SJAG_02336","SJAG_05296","SJAG_00723","SJAG_01224","SJAG_02700","SJAG_01297","SJAG_00279","SJAG_03025","SJAG_04312"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69628,73190],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030042"},{"annotations":[76037],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060172"},{"annotations":[75373,78904,79807,92083],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0051016"},{"annotations":[79417],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072318"},{"annotations":[89367,98406,117959],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007019"},{"annotations":[108066,103690],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070462"},{"annotations":[101639],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0031117"}]},"cv_name":"biological_process","definition":"The process in which protein polymers, compounds composed of a large number of component monomers, are broken down. Depolymerization occurs by the successive removal of monomers from an existing poly- or oligomeric protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex disassembly","termid":"GO:0032984"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_00723":null,"SJAG_01224":null,"SJAG_01297":null,"SJAG_01894":null,"SJAG_01993":null,"SJAG_02336":null,"SJAG_02624":null,"SJAG_02700":null,"SJAG_03025":null,"SJAG_03380":null,"SJAG_04312":null,"SJAG_04841":null,"SJAG_05296":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein depolymerization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"protein polymer breakdown","type":"exact"},{"name":"protein polymer catabolic process","type":"exact"},{"name":"protein polymer catabolism","type":"exact"},{"name":"protein polymer degradation","type":"exact"}],"termid":"GO:0051261","terms_by_termid":{"GO:0007019":null,"GO:0030042":null,"GO:0031117":null,"GO:0051016":null,"GO:0060172":null,"GO:0070462":null,"GO:0072318":null}}


id: PBO:0002173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rad54 homolog Rhp54","termid":"PBO:0002173"}


id: GO:0102682
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(6)-(dimethylallyl)adenosine 5'-phosphate + H2O = N(6)-dimethylallyladenine + D-ribose 5-phosphate.","definition_xrefs":["RHEA:48560","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing N-glycosyl compounds","termid":"GO:0016799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0016798","GO:0003824"],"is_obsolete":false,"name":"cytokinin riboside 5'-monophosphate phosphoribohydrolase activity","secondary_identifiers":["EC:3.2.2.n1","MetaCyc:RXN-4313"],"synonyms":[{"name":"N6-(Delta2-isopentenyl)-adenosine 5'-monophosphate phosphoribohydrolase activity","type":"exact"}],"termid":"GO:0102682"}


id: PBO:0090070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial copper chaperone for cytochrome c oxidase Cox16","termid":"PBO:0090070"}


id: GO:0039711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly of a helical viral capsid in the cytoplasm. Occurs by assembling around the viral genome.","definition_xrefs":["VZ:1950"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic capsid assembly","termid":"GO:0039709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoplasmic helical capsid assembly","termid":"GO:0039711"}


id: PBO:0005245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L2 (predicted)","termid":"PBO:0005245"}


id: PBO:0083825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential subunit of the Dam1 complex (aka DASH complex); couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; phosphorylated during the cell cycle by cyclin-dependent kinases; sumoylated in an Mms21p-dependent manner; protein abundance increases in response to DNA replication stress","termid":"PBO:0083825"}


id: PBO:0038775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein T3","termid":"PBO:0038775"}


id: PBO:0038374
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-related_via_exposure_to","termid":"PBO:0038374"}


id: PBO:0066542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 7","termid":"PBO:0066542"}


id: PBO:0039063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AGK divergent transcript","termid":"PBO:0039063"}


id: PATO:0000287
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000287 absolute litter size (obsolete PATO:0000287)","termid":"PATO:0000287"}


id: GO:0035486
data:
  {"annotated_genes":["SJAG_00634"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97958],"is_not":false,"summary":null,"term":"GO:0035486"}]},"cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing a C/C mispair.","definition_xrefs":["GOC:bf","GOC:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatched DNA binding","termid":"GO:0030983"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003677"],"is_obsolete":false,"name":"cytosine/cytosine mispair binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"C/C mispair binding","type":"exact"}],"termid":"GO:0035486","terms_by_termid":{"GO:0035486":null}}


id: PBO:0082405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta subunit of the translation initiation factor eIF2; involved in the identification of the start codon; proposed to be involved in mRNA binding","termid":"PBO:0082405"}


id: PBO:0042547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 11B","termid":"PBO:0042547"}


id: MONDO:0022201
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete has treatment by surgery (obsolete MONDO:0022201)","termid":"MONDO:0022201","xrefs":{"Monarch":{"xref_id":"0022201"}}}


id: GO:0045865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of genetic recombination within the DNA of the genes coding for ribosomal RNA.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of recombination within rDNA repeats (obsolete GO:0045865)","synonyms":[{"name":"regulation of recombination within rDNA repeats","type":"exact"}],"termid":"GO:0045865"}


id: PBO:0090604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wybutosine biosynthesis protein Tyw1","termid":"PBO:0090604"}


id: SOFP:reported_pr_change
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reported_pr_change","termid":"SOFP:reported_pr_change"}


id: GO:0097161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a DH (Dbl homology) domain of a protein. The DH domain contains three structurally conserved regions separated by more variable regions. It is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH (pleckstrin homology) junction site, constitute the Rho GTPase interacting pocket.","definition_xrefs":["PMID:12775584","InterPro:IPR000219","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"DH domain binding","termid":"GO:0097161"}


id: GO:0036307
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + adenine(2030) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(2030) in 23S rRNA.","definition_xrefs":["RHEA:43736","GOC:imk","PMID:22847818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA (adenine-N6-)-methyltransferase activity","termid":"GO:0008988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0140098","GO:0003674","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"23S rRNA (adenine(2030)-N(6))-methyltransferase activity","secondary_identifiers":["EC:2.1.1.266"],"termid":"GO:0036307"}


id: PR:P04910
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A.2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PMID:19965387","PomBase:MAH","PMID:15226425","PMID:21516229"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A.2","termid":"PR:000027545"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"core histone (Schizosaccharomyces pombe)","termid":"PR:000041293"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19G12.06c","secondary_identifiers":["UniProtKB:P04910","PR:000027546"],"synonyms":[{"name":"SPAC19G12.06C","type":"related"},{"name":"Spom972h-HTA2","type":"exact"}],"termid":"PR:P04910"}


id: MONDO:0003451
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete laryngeal neuroendocrine tumor (obsolete MONDO:0003451)","termid":"MONDO:0003451","xrefs":{"Monarch":{"xref_id":"0003451"}}}


id: PBO:0059547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Asn (AAU/C)","termid":"PBO:0059547"}


id: SO:0000392
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.","direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA","termid":"SO:0000274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2_snRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/U2_snRNA"],"synonyms":[{"name":"U2 small nuclear RNA","type":"exact"},{"name":"U2 snRNA","type":"exact"},{"name":"small nuclear RNA U2","type":"exact"},{"name":"snRNA U2","type":"exact"}],"termid":"SO:0000392"}


id: PBO:0070093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 7 pseudogene","termid":"PBO:0070093"}


id: PBO:0067386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 491, pseudogene","termid":"PBO:0067386"}


id: PR:O13733
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An N-terminal kinase-like protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01548","PANTHER:PTHR12984:SF3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase domain-containing protein ppk3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC15A10.13","secondary_identifiers":["UniProtKB:O13733"],"synonyms":[{"name":"Spom972h-SCYL1","type":"exact"}],"termid":"PR:O13733"}


id: GO:0005665
data:
  {"annotated_genes":["SJAG_01765","SJAG_01313","SJAG_00119","SJAG_04559","SJAG_01436","SJAG_01713","SJAG_00458","SJAG_02070","SJAG_04894","SJAG_04030","SJAG_02101","SJAG_02506","SJAG_04261"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70418,70743,72480,72899,74071,74825,75120,75363,76226,76733,77737,78596,112648],"is_not":false,"summary":null,"term":"GO:0005665"}]},"cv_name":"cellular_component","definition":"RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.","definition_xrefs":["GOC:mtg_sensu","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear DNA-directed RNA polymerase complex","termid":"GO:0055029"},{"relation_name":"part_of","term_name":"RNA polymerase II, holoenzyme","termid":"GO:0016591"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00119":null,"SJAG_00458":null,"SJAG_01313":null,"SJAG_01436":null,"SJAG_01713":null,"SJAG_01765":null,"SJAG_02070":null,"SJAG_02101":null,"SJAG_02506":null,"SJAG_04030":null,"SJAG_04261":null,"SJAG_04559":null,"SJAG_04894":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005654","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"RNA polymerase II, core complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"DNA-directed RNA polymerase II, core complex","type":"exact"},{"name":"RNA polymerase II complex","type":"broad"},{"name":"RNAP II complex","type":"broad"}],"termid":"GO:0005665","terms_by_termid":{"GO:0005665":null}}


id: PBO:0089418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L28","termid":"PBO:0089418"}


id: GO:0052772
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of brefeldin A to produce brefeldin A acid. Brefeldin A is also known as gamma,4-dihydroxy-2-(6-hydroxy-1-heptenyl)-4-cyclopentanecrotonic acid lambda-lactone.","definition_xrefs":["PMID:10201402","PMID:8106385","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"brefeldin A esterase activity","synonyms":[{"name":"BFA esterase activity","type":"broad"},{"name":"brefeldin A hydrolase activity","type":"exact"}],"termid":"GO:0052772"}


id: GO:1990310
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type-III dockerin domain of a protein. Type-III dockerin domain is the binding partner of type-III cohesin domain.","definition_xrefs":["PMID:23195689","GOC:mengo_curators","PMID:24080387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"type-III dockerin domain binding","termid":"GO:1990310"}


id: PBO:0017014
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Orc4 binds to the T-rich strand of replication origins throughout the cell cycle","termid":"PBO:0017014"}


id: MONDO:0033135
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare autosomal dominant hereditary demyelinating motor and sensory neuropathy characterized by progressive distal muscle weakness and atrophy, distal sensory impairment, and decreased or absent reflexes in the affected limbs, with an onset in the first or second decade of life. Median motor nerve conduction velocities are typically less than 38 m/s. Patients often have foot deformities. Sural nerve biopsy shows decrease in myelinated fibers, myelin abnormalities, and onion bulb formation. Fatty replacement of muscle tissue predominantly affects the anterior and lateral compartment of the lower legs.","definition_xrefs":["Orphanet:476394"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease","termid":"MONDO:0015626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0000426"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease, demyelinating, type 1G","secondary_identifiers":["GARD:17851","DOID:0111560","MEDGEN:1648290","OMIM:618279","UMLS:C4748940"],"synonyms":[{"name":"CMT1G","type":"exact"},{"name":"Charcot-Marie-Tooth disease, demyelinating, type 1G","type":"exact"},{"name":"PMP2-related Charcot-Marie-Tooth disease type 1","type":"exact"}],"termid":"MONDO:0033135","xrefs":{"Monarch":{"xref_id":"0033135"}}}


id: GO:0015858
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleobase-containing compound transport","termid":"GO:0015931"},{"relation_name":"is_a","term_name":"carbohydrate derivative transport","termid":"GO:1901264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"nucleoside transport","termid":"GO:0015858"}


id: MONDO:0018014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Transient neonatal multiple acyl-CoA dehydrogenase deficiency describes a very rare condition where a maternal riboflavin deficiency causes an infant to present with manifestations similar to those seen in multiple acyl-CoA dehydrogenase (MAD) deficiency such as poor suck, metabolic acidosis and hypoglycemia, but that resolves completely with oral riboflavin. In the one patient described haploinsufficiency of the human riboflavin transporter (hRFT1) was described in the mother.","definition_xrefs":["Orphanet:329942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA dehydrogenase deficiency","termid":"MONDO:0017714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"transient neonatal multiple acyl-CoA dehydrogenase deficiency","secondary_identifiers":["UMLS:C4509950","MEDGEN:1373921","GARD:21498","SCTID:723552005"],"synonyms":[{"name":"transient neonatal MAD deficiency","type":"exact"},{"name":"transient neonatal MADD","type":"exact"},{"name":"transient neonatal glutaric acidemia type 2","type":"exact"},{"name":"transient neonatal glutaric aciduria type 2","type":"exact"}],"termid":"MONDO:0018014","xrefs":{"Monarch":{"xref_id":"0018014"}}}


id: GO:0070959
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the directed killing of a fungal cell by a neutrophil.","definition_xrefs":["GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neutrophil mediated killing of fungus","termid":"GO:0070953"},{"relation_name":"is_a","term_name":"negative regulation of neutrophil mediated killing of symbiont cell","termid":"GO:0070955"},{"relation_name":"negatively_regulates","term_name":"neutrophil-mediated killing of fungus","termid":"GO:0070947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neutrophil mediated killing of fungus","synonyms":[{"name":"down regulation of neutrophil mediated killing of fungus","type":"exact"},{"name":"down-regulation of neutrophil mediated killing of fungus","type":"exact"},{"name":"downregulation of neutrophil mediated killing of fungus","type":"exact"},{"name":"inhibition of neutrophil mediated killing of fungus","type":"narrow"}],"termid":"GO:0070959"}


id: PBO:0018115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unconventional prefoldin chaperone involved protein complex assembly Uri1 (predicted)","termid":"PBO:0018115"}


id: FYPO:0007829
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the site of cell division begins earlier than normal.","definition_xrefs":["PomBase:mah","PMID:34133210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell division site","termid":"FYPO:0001401"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"premature protein localization to cell division site","synonyms":[{"name":"advanced protein localization to cell division site","type":"exact"},{"name":"precocious protein localization to cell division site","type":"exact"},{"name":"premature protein localisation to cell division site","type":"exact"},{"name":"premature protein localization to cell division site during mitotic cell cycle","type":"related"},{"name":"premature protein localization to cell division site during vegetative growth","type":"exact"},{"name":"premature protein recruitment to cell division site","type":"related"}],"termid":"FYPO:0007829"}


id: MONDO:0009498
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lethal Kniest-like dysplasia is a severe lethal skeletal dysplasia. It has been described in two sibs (one male and one female) born to nonconsanguineous parents. It is characterized by dumbbell-shaped long bones with markedly shortened diaphyses and metaphyseal irregularities.","definition_xrefs":["Orphanet:2347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"lethal Kniest-like dysplasia","secondary_identifiers":["MEDGEN:383721","MESH:C537208","UMLS:C1855605","GARD:3124","OMIM:245190"],"synonyms":[{"name":"Kniest like dysplasia lethal","type":"related"},{"name":"Kniest-like dysplasia, lethal","type":"related"},{"name":"arthrosis, flat face, hypotonia, short neck and macrocephaly","type":"related"}],"termid":"MONDO:0009498","xrefs":{"Monarch":{"xref_id":"0009498"}}}


id: PBO:0027258
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_chromatin_at_tRNA_genes","termid":"PBO:0027258"}


id: GO:0032030
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a light chain of a myosin I complex.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin I binding","termid":"GO:0017024"},{"relation_name":"is_a","term_name":"myosin light chain binding","termid":"GO:0032027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0008092","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"myosin I light chain binding","termid":"GO:0032030"}


id: FYPO:0003312
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR formyltransferase) activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal phosphoribosylaminoimidazolecarboxamide formyltransferase activity","termid":"FYPO:0003311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000661","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"abolished phosphoribosylaminoimidazolecarboxamide formyltransferase activity","synonyms":[{"name":"abolished AICAR formyltransferase activity","type":"exact"},{"name":"phosphoribosylaminoimidazolecarboxamide formyltransferase activity abolished","type":"exact"}],"termid":"FYPO:0003312"}


id: PBO:0057442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 559","termid":"PBO:0057442"}


id: PBO:0027641
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_caffeine_during_meiosis_II","termid":"PBO:0027641"}


id: MONDO:0032654
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hyper-IgE syndrome","termid":"MONDO:0018037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"hyper-IgE recurrent infection syndrome 3, autosomal recessive","secondary_identifiers":["MEDGEN:1648483","OMIM:618282","DOID:0080595","UMLS:C4748969"],"synonyms":[{"name":"HIES3","type":"related"},{"name":"HYPER-IgE RECURRENT INFECTION SYNDROME 3, AUTOSOMAL RECESSIVE","type":"related"}],"termid":"MONDO:0032654","xrefs":{"Monarch":{"xref_id":"0032654"}}}


id: GO:0007493
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell fate determination process in which a cell becomes capable of differentiating autonomously into an endoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["ISBN:0878932437","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate determination","termid":"GO:0001709"},{"relation_name":"part_of","term_name":"endodermal cell fate commitment","termid":"GO:0001711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endodermal cell fate determination","synonyms":[{"name":"endoderm cell fate determination","type":"exact"}],"termid":"GO:0007493"}


id: GO:0015638
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a microcin from one side of a membrane to the other.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide transmembrane transporter activity","termid":"GO:0042887"},{"relation_name":"is_a","term_name":"xenobiotic transmembrane transporter activity","termid":"GO:0042910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"microcin transmembrane transporter activity","synonyms":[{"name":"microcin uptake permease activity","type":"exact"}],"termid":"GO:0015638"}


id: MONDO:0013729
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any pregnancy loss, recurrent, susceptibility in which the cause of the disease is a mutation in the ANXA5 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pregnancy loss, recurrent, susceptibility","termid":"MONDO:0000144"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy loss, recurrent, susceptibility to, 3","secondary_identifiers":["OMIM:614391","UMLS:C3280674","MEDGEN:482304"],"synonyms":[{"name":"ANXA5 pregnancy loss, recurrent, susceptibility","type":"exact"},{"name":"RPRGL3","type":"related"},{"name":"pregnancy loss, recurrent, susceptibility caused by mutation in ANXA5","type":"exact"},{"name":"pregnancy loss, recurrent, susceptibility to, 3","type":"exact"},{"name":"pregnancy loss, recurrent, susceptibility to, type 3","type":"exact"}],"termid":"MONDO:0013729","xrefs":{"Monarch":{"xref_id":"0013729"}}}


id: PBO:0074220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 44 member 4","termid":"PBO:0074220"}


id: GO:0007298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a border cell through the nurse cells to reach the oocyte. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","PMID:10822261"],"direct_ancestors":[{"relation_name":"is_a","term_name":"follicle cell of egg chamber migration","termid":"GO:0007297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"border follicle cell migration","synonyms":[{"name":"border cell migration","type":"broad"}],"termid":"GO:0007298"}


id: SO:0000440
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A replicon that has been modified to act as a vector for foreign sequence.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"replicon","termid":"SO:0001235"},{"relation_name":"part_of","term_name":"clone","termid":"SO:0000151"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vector_replicon","secondary_identifiers":["http://en.wikipedia.org/wiki/Vector_(molecular_biology)"],"synonyms":[{"name":"vector","type":"exact"},{"name":"vector replicon","type":"exact"}],"termid":"SO:0000440"}


id: PBO:0081142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP42 zinc finger protein","termid":"PBO:0081142"}


id: PBO:0091827
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lipid Transfer at Contact site","termid":"PBO:0091827"}


id: PBO:0005664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase Gut2 (predicted)","termid":"PBO:0005664"}


id: GO:0007088
data:
  {"annotated_genes":["SJAG_02498","SJAG_03353","SJAG_01330","SJAG_04573","SJAG_04259","SJAG_02169","SJAG_03681","SJAG_02451","SJAG_00666","SJAG_01837","SJAG_02380","SJAG_01679","SJAG_01805","SJAG_03048","SJAG_02058","SJAG_04699","SJAG_01297","SJAG_04968","SJAG_04884","SJAG_00883","SJAG_04126","SJAG_04999","SJAG_03126","SJAG_02336","SJAG_01082"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110722],"is_not":false,"summary":null,"term":"GO:0007088"},{"annotations":[108054,107032,111757,113584,103681,115709,114072,99376,90477],"is_not":false,"rel_names":["regulates","is_a","negatively_regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[115363,101586,106117,99220,109708,114305],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007094"},{"annotations":[93959],"is_not":false,"rel_names":["negatively_regulates","is_a","regulates"],"summary":null,"term":"GO:0140499"},{"annotations":[116484],"is_not":false,"rel_names":["positively_regulates","regulates","is_a"],"summary":null,"term":"GO:0090267"},{"annotations":[114576,97472,111173,99926,102169,101897,93563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045842"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mitosis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic cell cycle","termid":"GO:0007346"},{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of nuclear division","termid":"GO:0051783"},{"relation_name":"regulates","term_name":"mitotic nuclear division","termid":"GO:0140014"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00666":null,"SJAG_00883":null,"SJAG_01082":null,"SJAG_01297":null,"SJAG_01330":null,"SJAG_01679":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_02058":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02380":null,"SJAG_02451":null,"SJAG_02498":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04573":null,"SJAG_04699":null,"SJAG_04884":null,"SJAG_04968":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of mitotic nuclear division","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of mitosis","type":"exact"}],"termid":"GO:0007088","terms_by_termid":{"GO:0007088":null,"GO:0007094":null,"GO:0045842":null,"GO:0090267":null,"GO:0140499":null,"GO:1902426":null}}


id: FYPO:0005870
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms a septum that does not completely bisect the cell.","definition_xrefs":["PomBase:mah","PMID:21931816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum morphology during vegetative growth","termid":"FYPO:0002023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000032","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"incomplete septum","synonyms":[{"name":"discontinuous septum","type":"exact"},{"name":"incomplete septum during mitotic cell cycle","type":"related"},{"name":"incomplete septum during vegetative growth","type":"exact"},{"name":"incomplete septum structure","type":"exact"}],"termid":"FYPO:0005870"}


id: MONDO:1010170
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Krabbe disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal storage disease, non-human animal","termid":"MONDO:1010171"},{"relation_name":"is_a","term_name":"leukodystrophy, non-human animal","termid":"MONDO:1010238"},{"relation_name":"is_a","term_name":"peripheral neuropathy, non-human animal","termid":"MONDO:1010239"},{"relation_name":"is_a","term_name":"disorder of orbital region, non-human animal","termid":"MONDO:1011315"},{"relation_name":"is_a","term_name":"disorder of visual system, non-human animal","termid":"MONDO:1011316"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Krabbe disease, non-human animal","secondary_identifiers":["OMIA:000578"],"termid":"MONDO:1010170","xrefs":{"Monarch":{"xref_id":"1010170"}}}


id: GO:0060880
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in form (cell shape and size) that occurs when a semicircular canal epithelial cell acquires the structural features that allow it to contribute to the process of semicircular canal fusion.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"semicircular canal fusion","termid":"GO:0060879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell morphogenesis involved in semicircular canal fusion","termid":"GO:0060880"}


id: MONDO:0000970
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, mesenchymal neoplasm that arises from the breast. It is surrounded by a thin capsule and composed of mature adipose tissue cells. Atypia is absent.","definition_xrefs":["NCIT:C4647"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast benign neoplasm","termid":"MONDO:0000620"},{"relation_name":"is_a","term_name":"lipoma","termid":"MONDO:0005106"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast lipoma","secondary_identifiers":["DOID:10199","UMLS:C0349565","ICD9:214.1","SCTID:276891009","MEDGEN:138103"],"synonyms":[{"name":"breast lipoma","type":"exact"},{"name":"lipoma of breast","type":"exact"},{"name":"lipoma of the breast","type":"exact"}],"termid":"MONDO:0000970","xrefs":{"Monarch":{"xref_id":"0000970"}}}


id: PBO:0056926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myo-inositol oxygenase pseudogene 1","termid":"PBO:0056926"}


id: GO:0048091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of establishment of a pattern of pigment in females.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental pigmentation","termid":"GO:0048087"},{"relation_name":"is_a","term_name":"regulation of female pigmentation","termid":"GO:0048089"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"female pigmentation","termid":"GO:0048095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of female pigmentation","synonyms":[{"name":"activation of female pigmentation","type":"narrow"},{"name":"stimulation of female pigmentation","type":"narrow"},{"name":"up regulation of female pigmentation","type":"exact"},{"name":"up-regulation of female pigmentation","type":"exact"},{"name":"upregulation of female pigmentation","type":"exact"}],"termid":"GO:0048091"}


id: MONDO:0035791
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete non-syndromic anorectal malformation with rectal stenosis (obsolete MONDO:0035791)","secondary_identifiers":["Orphanet:601023"],"termid":"MONDO:0035791","xrefs":{"Monarch":{"xref_id":"0035791"}}}


id: PBO:0080164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variable charge Y-linked 1B","termid":"PBO:0080164"}


id: PBO:0055180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2604","termid":"PBO:0055180"}


id: SO:0001932
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A terminal region of DNA sequence where the end of the region is not blunt ended and the exposed single strand terminates at the 5' end.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"restriction_enzyme_single_strand_overhang","termid":"SO:0001695"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restriction_enzyme_five_prime_single_strand_overhang","synonyms":[{"name":"restriction enzyme five prime single strand overhang","type":"exact"}],"termid":"SO:0001932"}


id: MONDO:0009319
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pantothenate kinase-associated neurodegeneration (PKAN) is the most common type of neurodegeneration with brain iron accumulation (NBIA), a rare neurodegenerative disorder characterized by progressive extrapyramidal dysfunction (dystonia, rigidity, choreoathetosis), iron accumulation on the brain and axonal spheroids in the central nervous system.","definition_xrefs":["Orphanet:157850"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroacanthocytosis","termid":"MONDO:0016987"},{"relation_name":"is_a","term_name":"disorder of phospholipids, sphingolipids and fatty acids biosynthesis","termid":"MONDO:0018117"},{"relation_name":"is_a","term_name":"neurodegeneration with brain iron accumulation","termid":"MONDO:0018307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002039","MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"pantothenate kinase-associated neurodegeneration","secondary_identifiers":["MEDGEN:6708","DOID:3981","NANDO:2200886","SCTID:2992000","NORD:1550","NCIT:C84988","OMIM:234200","UMLS:C0018523","GARD:6564","MESH:D006211","NANDO:1200534","ICD9:333.0"],"synonyms":[{"name":"Hallervorden-Spatz disease","type":"exact"},{"name":"Hallervorden-Spatz syndrome","type":"exact"},{"name":"NBIA1","type":"exact"},{"name":"PKAN","type":"exact"},{"name":"Pkan neuroaxonal dystrophy, juvenile-onset","type":"related"},{"name":"brain iron accumulation type I syndrome","type":"broad"},{"name":"neuroaxonal dystrophy, late infantile","type":"related"},{"name":"neurodegeneration with brain iron accumulation 1","type":"exact"},{"name":"neurodegeneration with brain iron accumulation type 1","type":"exact"},{"name":"pantothenate kinase-associated neurodegeneration","type":"exact"},{"name":"pigmentary pallidal degeneration","type":"exact"}],"termid":"MONDO:0009319","xrefs":{"Monarch":{"xref_id":"0009319"}}}


id: PBO:0068483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 64, pseudogene","termid":"PBO:0068483"}


id: FYPO:0001467
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell phenotype observed in the vegetative growth phase of the life cycle in which the steady-state intracellular calcium ion (Ca2+) concentration increases normally following an extracellular Ca2+ stimulus. Normally, a dose-dependent increased steady-state Ca2+ concentration is reached within 2-3 minutes of extracellular Ca2+ addition, and is sustained for several hours.","definition_xrefs":["PMID:21811607","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete normal increase in steady-state intracellular calcium level following extracellular calcium stimulus (obsolete FYPO:0001467)","synonyms":[{"name":"normal increase in steady-state intracellular calcium level following extracellular calcium stimulus","type":"exact"},{"name":"normal increase in steady-state intracellular calcium level following extracellular calcium stimulus during mitotic cell cycle","type":"related"},{"name":"normal increase in steady-state intracellular calcium level following extracellular calcium stimulus during vegetative growth","type":"exact"}],"termid":"FYPO:0001467"}


id: GO:0043669
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer part of the exine, which stains positively with basic fuchsin in optical microscopy and has higher electron density in conventionally prepared TEM sections.","definition_xrefs":["PMID:28904424"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"exine","termid":"GO:0043668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ectexine","termid":"GO:0043669"}


id: PBO:0049102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPR158 antisense RNA 1","termid":"PBO:0049102"}


id: PR:Q92371
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- btf3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q92371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nascent polypeptide-associated complex subunit beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.14c","synonyms":[{"name":"NAC-beta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-btf3","type":"exact"},{"name":"beta-NAC (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q92371"}


id: GO:0075344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The alteration by an organism of protein levels in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host protein levels (obsolete GO:0075344)","termid":"GO:0075344"}


id: GO:0140815
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-histidyl-[protein] + NAD+ = H+ + Nt-(ADP-D-ribosyl)-L-histidyl-[protein] + nicotinamide.","definition_xrefs":["PMID:35393539","RHEA:72071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NAD+-protein mono-ADP-ribosyltransferase activity","termid":"GO:1990404"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0140096","GO:0016757"],"is_obsolete":false,"name":"NAD+-protein-histidine ADP-ribosyltransferase activity","termid":"GO:0140815"}


id: PBO:0075622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sprouty related EVH1 domain containing 3","termid":"PBO:0075622"}


id: PBO:0004403
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pombe LRO 1 Homolog","termid":"PBO:0004403"}


id: MONDO:0017847
data:
  {"annotated_genes":["SJAG_16456","SJAG_01179","SJAG_00797"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85246],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012664"},{"annotations":[86812],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013354"},{"annotations":[86422],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013776"}]},"cv_name":"mondo","definition":"Autosomal recessive form of spastic ataxia.","definition_xrefs":["MONDO:patterns/autosomal_recessive"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"spastic ataxia","termid":"MONDO:0017845"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00797":null,"SJAG_01179":null,"SJAG_16456":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive spastic ataxia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:21403","MEDGEN:1826141","Orphanet:316240","UMLS:C5679900"],"synonyms":[{"name":"AR-SPAX","type":"exact"},{"name":"spastic ataxia, autosomal recessive","type":"exact"}],"termid":"MONDO:0017847","terms_by_termid":{"MONDO:0012664":null,"MONDO:0013354":null,"MONDO:0013776":null},"xrefs":{"Monarch":{"xref_id":"0017847"}}}


id: GO:0070822
data:
  {"annotated_genes":["SJAG_01110","SJAG_00349","SJAG_00581","SJAG_02439","SJAG_00441","SJAG_03255","SJAG_02981","SJAG_00868","SJAG_02846","SJAG_03230","SJAG_03867","SJAG_03884","SJAG_03441","SJAG_01804","SJAG_04758","SJAG_04576","SJAG_01230"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[80092,76998,94399,88853,102564,104825,106545,109266,114035,75514,75616,75750,78752],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033698"},{"annotations":[72465,93536,95206,76285,72602,109268],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032221"}]},"cv_name":"cellular_component","definition":"Any of a number of evolutionarily conserved histone deacetylase complexes (HDACs) containing a core consisting of a paired amphipathic helix motif protein (e.g. Sin3p in S. cerevisiae, Pst1 in S. pombe or Sin3A in mammals) at least one class I histone deacetylase (e.g. Rpd3p in S. cerevisiae, Clr6 in S. pombe, or HDAC1 and HDAC2 in mammals), and at least one WD40 repeat protein (e.g. Ume1p in S. cerevisiae, Prw1 in S. pombe, or RbAp46 and RbAp48 in mammals). These complexes also contain a variable number of other proteins that direct histone binding, DNA binding, or add other functionality to the complex.","definition_xrefs":["PMID:18292778","PMID:15565322"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deacetylase complex","termid":"GO:0000118"},{"relation_name":"part_of","term_name":"nuclear chromosome","termid":"GO:0000228"},{"relation_name":"part_of","term_name":"chromatin","termid":"GO:0000785"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00349":null,"SJAG_00441":null,"SJAG_00581":null,"SJAG_00868":null,"SJAG_01110":null,"SJAG_01230":null,"SJAG_01804":null,"SJAG_02439":null,"SJAG_02846":null,"SJAG_02981":null,"SJAG_03230":null,"SJAG_03255":null,"SJAG_03441":null,"SJAG_03867":null,"SJAG_03884":null,"SJAG_04576":null,"SJAG_04758":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005694","GO:0005575","GO:0032991","GO:0005654"],"is_obsolete":false,"name":"Sin3-type complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0070822","terms_by_termid":{"GO:0032221":null,"GO:0033698":null}}


id: PBO:0057216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR378D2 host gene","termid":"PBO:0057216"}


id: GO:1901964
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell proliferation involved in outflow tract morphogenesis.","definition_xrefs":["GOC:dph","GOC:mtg_heart","PMID:21419760","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell proliferation involved in outflow tract morphogenesis","termid":"GO:1901963"},{"relation_name":"is_a","term_name":"positive regulation of cell proliferation involved in heart morphogenesis","termid":"GO:2000138"},{"relation_name":"positively_regulates","term_name":"cell proliferation involved in outflow tract morphogenesis","termid":"GO:0061325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell proliferation involved in outflow tract morphogenesis","synonyms":[{"name":"activation of cell proliferation involved in outflow tract morphogenesis","type":"narrow"},{"name":"up regulation of cell proliferation involved in outflow tract morphogenesis","type":"exact"},{"name":"up-regulation of cell proliferation involved in outflow tract morphogenesis","type":"exact"},{"name":"upregulation of cell proliferation involved in outflow tract morphogenesis","type":"exact"}],"termid":"GO:1901964"}


id: MONDO:0004049
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neurotic reactions to unusual, severe, or overwhelming military stress.","definition_xrefs":["MESH:D003130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute stress disorder","termid":"MONDO:0003763"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"combat disorder","secondary_identifiers":["MEDGEN:40403","DOID:6950","SCTID:279611005","UMLS:C0009426"],"synonyms":[{"name":"Shocks, shell","type":"related"},{"name":"combat disorder","type":"exact"},{"name":"combat neuroses","type":"related"},{"name":"combat neurosis","type":"exact"},{"name":"combat stress disorder","type":"related"},{"name":"combat stress disorders","type":"related"},{"name":"disorder, combat","type":"related"},{"name":"disorder, combat stress","type":"related"},{"name":"disorders, combat","type":"related"},{"name":"disorders, combat stress","type":"related"},{"name":"neuroses, combat","type":"related"},{"name":"neuroses, war","type":"related"},{"name":"neurosis, combat","type":"related"},{"name":"neurosis, war","type":"related"},{"name":"shell Shocks","type":"related"},{"name":"shell shock","type":"related"},{"name":"shock, shell","type":"related"},{"name":"stress disorder, combat","type":"related"},{"name":"stress disorders, combat","type":"related"},{"name":"war neuroses","type":"related"},{"name":"war neurosis","type":"related"}],"termid":"MONDO:0004049","xrefs":{"Monarch":{"xref_id":"0004049"}}}


id: PBO:0017832
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Suppressor of Cdc Four","termid":"PBO:0017832"}


id: PBO:0042205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin H pseudogene 1","termid":"PBO:0042205"}


id: GO:1905238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclosporin A stimulus.","definition_xrefs":["PMID:24914722","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"},{"relation_name":"is_a","term_name":"response to cyclosporin A","termid":"GO:1905237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cyclosporin A","synonyms":[{"name":"cellular response to cyclophilin","type":"exact"}],"termid":"GO:1905238"}


id: MONDO:0014149
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fetal akinesia-cerebral and retinal hemorrhage syndrome is a rare, lethal, congenital myopathy syndrome characterized by decreased fetal movements and polyhydraminos in utero and the presence of akinesia, severe hypotonia with respiratory insufficiency, absent reflexes, joint contractures, skeletal abnormalities with thin ribs and bones, intracranial and retinal hemorrhages and decreased birth weight in the neonate.","definition_xrefs":["Orphanet:363409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lethal congenital contracture syndrome","termid":"MONDO:0017436"},{"relation_name":"is_a","term_name":"congenital myopathy","termid":"MONDO:0019952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"fetal akinesia-cerebral and retinal hemorrhage syndrome","secondary_identifiers":["UMLS:C4706410","SCTID:763346009","MEDGEN:1631944","OMIM:615368","GARD:17553"],"synonyms":[{"name":"LCCS5","type":"related"},{"name":"lethal congenital contracture syndrome 5","type":"related"},{"name":"lethal congenital contracture syndrome type 5","type":"exact"},{"name":"myopathy, centronuclear, lethal, autosomal recessive","type":"related"}],"termid":"MONDO:0014149","xrefs":{"Monarch":{"xref_id":"0014149"}}}


id: PBO:0059079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monoacylglycerol O-acyltransferase 2","termid":"PBO:0059079"}


id: GO:0031271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The extension of a pseudopodium from the lateral area of a cell.","definition_xrefs":["GOC:mah","GOC:pg","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudopodium assembly","termid":"GO:0031269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"lateral pseudopodium assembly","synonyms":[{"name":"lateral pseudopodium formation","type":"related"}],"termid":"GO:0031271"}


id: MONDO:1012608
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any unconjugated hyperbilirubinemia due to an increase in the bilirubin turnover/production rate and/or decreased hepatic conjugation during fasting that occurs in Bolivian squirrel monkey.","definition_xrefs":["PMID:1316506"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperbilirubinemia, non-human animal","termid":"MONDO:1012974"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fasting unconjugated hyperbilirubinemia, Bolivian squirrel monkey","secondary_identifiers":["OMIA:000496-27679"],"synonyms":[{"name":"hyperbilirubinaemia I, Bolivian squirrel monkey","type":"related"}],"termid":"MONDO:1012608","xrefs":{"Monarch":{"xref_id":"1012608"}}}


id: GO:0001963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The vesicular release of dopamine. from a presynapse, across a chemical synapse, the subsequent activation of dopamine receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse.","definition_xrefs":["GOC:dos","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemical synaptic transmission","termid":"GO:0007268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"synaptic transmission, dopaminergic","synonyms":[{"name":"dopaminergic synaptic transmission","type":"exact"}],"termid":"GO:0001963"}


id: MONDO:0012018
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete myopathy, myosin storage, autosomal dominant (obsolete MONDO:0012018)","termid":"MONDO:0012018","xrefs":{"Monarch":{"xref_id":"0012018"}}}


id: GO:0072171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a mesonephric tubule are generated and organized. A mesonephric tubule is an epithelial tube that is part of the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule morphogenesis","termid":"GO:0072078"},{"relation_name":"part_of","term_name":"mesonephric tubule development","termid":"GO:0072164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric tubule morphogenesis","termid":"GO:0072171"}


id: PBO:0066497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret finger protein like 4B","termid":"PBO:0066497"}


id: PBO:0004257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RSC complex subunit Rsc9","termid":"PBO:0004257"}


id: GO:0002117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the amphibian larva over time, from its formation to the mature structure. Amphibian larvae, sometimes called pollywogs or tadpoles, hatch from eggs and begin to grow limbs and other adult physical features at various times, depending on the species, before they metamorphose into the adult form.","definition_xrefs":["GOC:bf","PMID:27143402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"larval development","termid":"GO:0002164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amphibian larval development","termid":"GO:0002117"}


id: GO:1900613
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of F-9775B.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"polyketide catabolic process","termid":"GO:0030640"},{"relation_name":"is_a","term_name":"F-9775B metabolic process","termid":"GO:1900612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"F-9775B catabolic process","synonyms":[{"name":"F-9775B breakdown","type":"exact"},{"name":"F-9775B catabolism","type":"exact"},{"name":"F-9775B degradation","type":"exact"}],"termid":"GO:1900613"}


id: MONDO:0008831
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An asphyxiating thoracic dystrophy associated with variation in the region 15q13.","definition_xrefs":["DOID:0110085","PMID:20503315"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Jeune syndrome","termid":"MONDO:0018770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"asphyxiating thoracic dystrophy 1","secondary_identifiers":["UMLS:C4551856","OMIM:208500","GARD:15140","MEDGEN:1648057"],"synonyms":[{"name":"ATD1","type":"exact"},{"name":"Jeune syndrome","type":"related"},{"name":"SRTD1","type":"exact"},{"name":"asphyxiating thoracic dystrophy 1","type":"exact"},{"name":"asphyxiating thoracic dystrophy type 1","type":"exact"},{"name":"short-rib thoracic dysplasia 1 with or without polydactyly","type":"exact"},{"name":"thoracic-pelvic-phalangeal dystrophy","type":"related"}],"termid":"MONDO:0008831","xrefs":{"Monarch":{"xref_id":"0008831"}}}


id: GO:0031304
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the mitochondrial inner membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of mitochondrial inner membrane (obsolete GO:0031304)","synonyms":[{"name":"intrinsic to mitochondrial inner membrane","type":"narrow"}],"termid":"GO:0031304"}


id: PBO:0054197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1572","termid":"PBO:0054197"}


id: FYPO:0004129
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a cysteine-type peptidase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased peptidase activity","termid":"FYPO:0000667"},{"relation_name":"is_a","term_name":"abnormal cysteine-type peptidase activity","termid":"FYPO:0004128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0000654","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"increased cysteine-type peptidase activity","synonyms":[{"name":"increased caspase activity","type":"narrow"},{"name":"increased cysteine protease activity","type":"exact"}],"termid":"FYPO:0004129"}


id: GO:0044734
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with a resultant positive regulation in the activity of an acid-sensing ion channel (ASIC) in the bitten organism.","definition_xrefs":["PMID:23034652","GOC:jl","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation resulting in modulation of acid-sensing ion channel activity in another organism","termid":"GO:0044733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in positive regulation of acid-sensing ion channel activity in another organism","synonyms":[{"name":"envenomation resulting in positive regulation of ASIC channel activity in other organism","type":"exact"},{"name":"envenomation resulting in positive regulation of acid-sensing ion channel activity in other organism","type":"exact"}],"termid":"GO:0044734"}


id: PBO:0048276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypeptide N-acetylgalactosaminyltransferase 12","termid":"PBO:0048276"}


id: PBO:0043261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"claudin 19","termid":"PBO:0043261"}


id: PBO:0067723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 21","termid":"PBO:0067723"}


id: FYPO:0007350
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which homologous chromosome pairing during meiosis (synapsis) is decreased (i.e. occurs to a lower extent) at a cis-acting homologous chromosome pairing region on chromosome 2.","definition_xrefs":["PomBase:mah","PomBase:vw","PMID:31811152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased homologous chromosome pairing at cis-acting homologous chromosome pairing region","termid":"FYPO:0003054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000641","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"decreased homologous chromosome pairing at cis-acting homologous chromosome pairing region on chromosome 2","synonyms":[{"name":"decreased homologous chromosome pairing at meiosis at cis-acting homologous chromosome pairing region on chromosome 2","type":"exact"},{"name":"decreased homologous chromosome pairing at sme2 locus","type":"narrow"},{"name":"decreased synapsis at cis-acting homologous chromosome pairing region on chromosome 2","type":"exact"},{"name":"reduced homologous chromosome pairing at cis-acting homologous chromosome pairing region on chromosome 2","type":"exact"}],"termid":"FYPO:0007350"}


id: GO:0016751
data:
  {"annotated_genes":["SJAG_03163"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75535],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004149"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a succinyl group to a sulfur atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-acyltransferase activity","termid":"GO:0016417"},{"relation_name":"is_a","term_name":"succinyltransferase activity","termid":"GO:0016748"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03163":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016746"],"is_obsolete":false,"name":"S-succinyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0016751","terms_by_termid":{"GO:0004149":null}}


id: PBO:0113385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; binds HEATR5 protein Laa1p; has some characteristics of a transcriptional activator; may be a target of Dbf2p-Mob1p kinase; GFP-fusion protein co-localizes with clathrin-coated vesicles; YML037C is not an essential gene","termid":"PBO:0113385"}


id: PBO:0029065
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_riboflavin_binding","termid":"PBO:0029065"}


id: MONDO:0020658
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"infiltrating renal pelvis/ureter urothelial carcinoma","termid":"MONDO:0004010"},{"relation_name":"is_a","term_name":"ureter transitional cell carcinoma","termid":"MONDO:0004030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"infiltrating ureter transitional cell carcinoma","secondary_identifiers":["DOID:6845"],"termid":"MONDO:0020658","xrefs":{"Monarch":{"xref_id":"0020658"}}}


id: GO:0043269
data:
  {"annotated_genes":["SJAG_00296","SJAG_04551","SJAG_03631"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113165,90973],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905949"},{"annotations":[101934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905665"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"monoatomic ion transport","termid":"GO:0006811"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_03631":null,"SJAG_04551":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of monoatomic ion transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of ion transport","type":"broad"}],"termid":"GO:0043269","terms_by_termid":{"GO:1905665":null,"GO:1905949":null}}


id: PBO:0043298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain containing 17A","termid":"PBO:0043298"}


id: MOD:01293
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to L-aspartic acid with one (18)O.","definition_xrefs":["PubMed:8382902","OMSSA:139","Unimod:366#N"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"deamidated L-asparagine","termid":"MOD:00684"},{"relation_name":"is_a","term_name":"1x(18)O labeled deamidated residue","termid":"MOD:00852"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1x(18)O labeled deamidated L-asparagine","synonyms":[{"name":"Deamidated:18O(1)","type":"related"},{"name":"Deamidation in presence of O18","type":"related"},{"name":"oxy18","type":"exact"}],"termid":"MOD:01293"}


id: MONDO:0004088
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive variant of cervical squamous cell carcinoma characterized by the presence of nests of malignant basaloid squamous cells with scant amount of cytoplasm.","definition_xrefs":["NCIT:C40189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basaloid squamous cell carcinoma","termid":"MONDO:0003486"},{"relation_name":"is_a","term_name":"cervical squamous cell carcinoma","termid":"MONDO:0006143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cervical basaloid carcinoma","secondary_identifiers":["MEDGEN:267027","DOID:7046","UMLS:C1511063"],"synonyms":[{"name":"cervical basaloid carcinoma","type":"exact"},{"name":"cervical basaloid squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0004088","xrefs":{"Monarch":{"xref_id":"0004088"}}}


id: GO:0045197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any cellular process that results in the specification, formation or maintenance of the apicobasal polarity of an epithelial cell.","definition_xrefs":["GOC:mah","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment or maintenance of apical/basal cell polarity","termid":"GO:0035088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"establishment or maintenance of epithelial cell apical/basal polarity","termid":"GO:0045197"}


id: GO:0009743
data:
  {"annotated_genes":["SJAG_01254","SJAG_01699","SJAG_01754","SJAG_00574","SJAG_04312","SJAG_02444","SJAG_00472","SJAG_03081","SJAG_04026"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109321,105704,93987,101636,106292,106644,116370,115338,108814],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010619"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00472":null,"SJAG_00574":null,"SJAG_01254":null,"SJAG_01699":null,"SJAG_01754":null,"SJAG_02444":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to carbohydrate","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"response to carbohydrate stimulus","type":"exact"}],"termid":"GO:0009743","terms_by_termid":{"GO:0010619":null}}


id: PR:O94393
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S proteasome non-ATPase regulatory subunit 9 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02190","PANTHER:PTHR12651:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory subunit p27 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2H10.02c","secondary_identifiers":["UniProtKB:O94393"],"synonyms":[{"name":"Spom972h-PSMD9","type":"exact"}],"termid":"PR:O94393"}


id: PBO:0049229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate metabotropic receptor 3","termid":"PBO:0049229"}


id: GO:1903651
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of cytoplasmic transport.","definition_xrefs":["PMID:25049409","GO_REF:0000058","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cytoplasmic transport (obsolete GO:1903651)","synonyms":[{"name":"activation of cytoplasmic streaming","type":"narrow"},{"name":"activation of cytoplasmic transport","type":"narrow"},{"name":"positive regulation of cytoplasmic streaming","type":"narrow"},{"name":"up regulation of cytoplasmic streaming","type":"narrow"},{"name":"up regulation of cytoplasmic transport","type":"exact"},{"name":"up-regulation of cytoplasmic streaming","type":"narrow"},{"name":"up-regulation of cytoplasmic transport","type":"exact"},{"name":"upregulation of cytoplasmic streaming","type":"narrow"},{"name":"upregulation of cytoplasmic transport","type":"exact"}],"termid":"GO:1903651"}


id: MONDO:0002144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hyperuricemia (obsolete MONDO:0002144)","secondary_identifiers":["DOID:1920","MESH:D033461","SCTID:35885006","ICD9:790.6"],"synonyms":[{"name":"blood urate raized","type":"exact"},{"name":"hyperuricemia","type":"exact"},{"name":"obsolete hyperuricemia (disease)","type":"exact"},{"name":"uricacidemia","type":"exact"}],"termid":"MONDO:0002144","xrefs":{"Monarch":{"xref_id":"0002144"}}}


id: PR:Q09888
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug160 gene.","definition_xrefs":["UniProtKB:Q09888","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 160 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC584.14","synonyms":[{"name":"Spom972h-mug160","type":"exact"}],"termid":"PR:Q09888"}


id: GO:0046908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the spontaneous (nonenzymatic) formation of crystals in a solution, for example, calcium oxalate crystals in urine.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of crystal formation (obsolete GO:0046908)","synonyms":[{"name":"negative regulation of crystal formation","type":"exact"},{"name":"negative regulation of mineralization","type":"related"}],"termid":"GO:0046908"}


id: GO:0047163
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3,4-dichloroaniline + malonyl-CoA = N-(3,4-dichlorophenyl)malonamate + CoA.","definition_xrefs":["EC:2.3.1.114","RHEA:21060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-malonyltransferase activity","termid":"GO:0050735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"3,4-dichloroaniline N-malonyltransferase activity","secondary_identifiers":["KEGG_REACTION:R04050","MetaCyc:2.3.1.114-RXN"],"synonyms":[{"name":"malonyl-CoA:3,4-dichloroaniline N-malonyltransferase activity","type":"related"}],"termid":"GO:0047163"}


id: GO:0070716
data:
  {"annotated_genes":["SJAG_02039"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97898],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990516"}]},"cv_name":"biological_process","definition":"A mismatch repair process that corrects errors introduced that ensures the accuracy of DNA replication.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch repair","termid":"GO:0006298"},{"relation_name":"part_of","term_name":"DNA-templated DNA replication maintenance of fidelity","termid":"GO:0045005"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02039":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0006259","GO:0006260","GO:0008150","GO:0006281"],"is_obsolete":false,"name":"mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mismatch repair involved in maintenance of fidelity during DNA-dependent DNA replication","type":"related"}],"termid":"GO:0070716","terms_by_termid":{"GO:1990516":null}}


id: PBO:0072214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S18 pseudogene 13","termid":"PBO:0072214"}


id: PBO:0070216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 148 pseudogene","termid":"PBO:0070216"}


id: GO:0075193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of symbiont haustorium mother cell formation. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"haustorium mother cell formation","termid":"GO:0075192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of haustorium mother cell formation","synonyms":[{"name":"regulation of haustorium mother cell formation on or near host","type":"exact"}],"termid":"GO:0075193"}


id: PBO:0069577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 850, pseudogene","termid":"PBO:0069577"}


id: PBO:0084290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral subunit of SAGA histone acetyltransferase complex; regulates transcription of a subset of SAGA-regulated genes, required for the Ubp8p association with SAGA and for H2B deubiquitylation","termid":"PBO:0084290"}


id: MONDO:1010087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dermatomyositis characterized by the presence of anti-TIF1 autoantibodies.","definition_xrefs":["PMID:31279808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatomyositis","termid":"MONDO:0016367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0005093"],"is_obsolete":false,"name":"anti-TIF1 dermatomyositis","synonyms":[{"name":"anti-transcription intermediary factor 1 complex dermatomyositis","type":"exact"}],"termid":"MONDO:1010087","xrefs":{"Monarch":{"xref_id":"1010087"}}}


id: PBO:0053994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1315","termid":"PBO:0053994"}


id: GO:0008314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals generated as a consequence of an epidermal growth factor receptor binding to a ligand Gurken.","definition_xrefs":["GOC:bf","PMID:23972992"],"gene_count":0,"genotype_count":0,"name":"obsolete gurken signaling pathway (obsolete GO:0008314)","synonyms":[{"name":"gurken receptor signaling pathway","type":"exact"},{"name":"gurken receptor signalling pathway","type":"exact"},{"name":"gurken-activated signaling pathway","type":"related"},{"name":"signaling by Gurken","type":"exact"}],"termid":"GO:0008314"}


id: PBO:0109222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin gamma complex component 3","termid":"PBO:0109222"}


id: GO:0061657
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Isoenergetic transfer of UFM1 from one protein to another via the reaction X-UFM1 + Y = Y-UFM1 + X, where both the X-UFM1 and Y-UFM1 linkages are thioester bonds between the C-terminal amino acid of UFM1 and a sulfhydryl side group of a cysteine residue.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein conjugating enzyme activity","termid":"GO:0061650"},{"relation_name":"is_a","term_name":"UFM1 transferase activity","termid":"GO:0071568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0019787","GO:0140096","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"UFM1 conjugating enzyme activity","synonyms":[{"name":"E2","type":"broad"}],"termid":"GO:0061657"}


id: PBO:0075498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 45","termid":"PBO:0075498"}


id: MONDO:0004900
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"vestibular disorder","termid":"MONDO:0002643"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peripheral vertigo","secondary_identifiers":["ICD9:386.1","SCTID:50438001","DOID:9847","ICD9:386.10","UMLS:C0155501","ICD9:386.19","MEDGEN:102334"],"termid":"MONDO:0004900","xrefs":{"Monarch":{"xref_id":"0004900"}}}


id: MONDO:0005846
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A fungal infection caused by Microsporidia. It occurs in immunocompromised patients, causing diarrhea and wasting.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"opportunistic mycosis","termid":"MONDO:0002312"},{"relation_name":"is_a","term_name":"parasitic infectious disease","termid":"MONDO:0005135"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microsporidiosis","secondary_identifiers":["MESH:D016881","EFO:0007366","SCTID:699676006","DOID:4271","MEDGEN:39278","NCIT:C84891","Orphanet:2552","UMLS:C0085407","icd11.foundation:1021483422","ICD9:117.9","GARD:3655","MedDRA:10053982"],"synonyms":[{"name":"Microsporidia caused disease or disorder","type":"exact"},{"name":"Microsporidia disease or disorder","type":"exact"},{"name":"Microsporidia infection","type":"exact"},{"name":"Microsporidia infectious disease","type":"exact"},{"name":"Microsporidiasis","type":"related"},{"name":"infection by Microspora","type":"exact"},{"name":"infection by Microsporea","type":"exact"},{"name":"infection by Microsporida","type":"exact"}],"termid":"MONDO:0005846","xrefs":{"Monarch":{"xref_id":"0005846"}}}


id: GO:0034151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 6 signaling pathway.","definition_xrefs":["PMID:16551253","PMID:17328678","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pattern recognition receptor signaling pathway","termid":"GO:0062207"},{"relation_name":"regulates","term_name":"toll-like receptor 6 signaling pathway","termid":"GO:0034150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of toll-like receptor 6 signaling pathway","synonyms":[{"name":"regulation of TLR6 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 6 signalling pathway","type":"exact"}],"termid":"GO:0034151"}


id: GO:0035489
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing a G/G mispair.","definition_xrefs":["GOC:jh","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatched DNA binding","termid":"GO:0030983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0003677","GO:0005488"],"is_obsolete":false,"name":"guanine/guanine mispair binding","synonyms":[{"name":"G/G mispair binding","type":"exact"}],"termid":"GO:0035489"}


id: PBO:0004465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2-associated protein (predicted)","termid":"PBO:0004465"}


id: GO:0050231
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: carbamoyl phosphate + putrescine = N-carbamoylputrescine + H+ + phosphate.","definition_xrefs":["EC:2.1.3.6","RHEA:21936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxyl- or carbamoyltransferase activity","termid":"GO:0016743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"putrescine carbamoyltransferase activity","secondary_identifiers":["MetaCyc:PUTRESCINE-CARBAMOYLTRANSFERASE-RXN","KEGG_REACTION:R01399"],"synonyms":[{"name":"PTCase activity","type":"related"},{"name":"carbamoyl-phosphate:putrescine carbamoyltransferase activity","type":"related"},{"name":"putrescine synthase activity","type":"related"},{"name":"putrescine transcarbamylase activity","type":"related"}],"termid":"GO:0050231"}


id: PBO:0078731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Met (anticodon CAT) 4-3","termid":"PBO:0078731"}


id: PBO:0038708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 2","termid":"PBO:0038708"}


id: PBO:0082264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aminopeptidase yscII; may have a role in obtaining leucine from dipeptide substrates; APE2 has a paralog, AAP1, that arose from the whole genome duplication","termid":"PBO:0082264"}


id: MOD:01330
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because identical with MOD:01094. Remap to MOD:01094","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01330 iodoacetic acid -site K (obsolete MOD:01330)","synonyms":[{"name":"Carboxymethyl","type":"related"},{"name":"Iodoacetic acid derivative","type":"related"}],"termid":"MOD:01330"}


id: GO:0070118
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer membrane of any thylakoid within an organellar chromatophore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thylakoid membrane","termid":"GO:0042651"},{"relation_name":"is_a","term_name":"organellar chromatophore membrane","termid":"GO:0070112"},{"relation_name":"part_of","term_name":"organellar chromatophore thylakoid","termid":"GO:0070116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"organellar chromatophore thylakoid membrane","synonyms":[{"name":"Paulinella-type chromatophore thylakoid membrane","type":"exact"}],"termid":"GO:0070118"}


id: PR:Q9UST7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sfc3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UST7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor tau subunit sfc3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC336.07","synonyms":[{"name":"Spom972h-sfc3","type":"exact"},{"name":"TFIIIC subunit sfc3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"transcription factor C subunit 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UST7"}


id: MONDO:0041154
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"urinary bladder disorder","termid":"MONDO:0006026"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disorder of neck of urinary bladder","secondary_identifiers":["UMLS:C0403653","SCTID:236644005","MEDGEN:588557"],"synonyms":[{"name":"functional disorder of bladder neck and sphincter mechanism","type":"exact"}],"termid":"MONDO:0041154","xrefs":{"Monarch":{"xref_id":"0041154"}}}


id: PBO:0074193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 39 member 3","termid":"PBO:0074193"}


id: PBO:0053359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 265-2, pseudogene","termid":"PBO:0053359"}


id: GO:0044464
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cell part (obsolete GO:0044464)","synonyms":[{"name":"cellular subcomponent","type":"exact"},{"name":"protoplast","type":"related"}],"termid":"GO:0044464"}


id: MOD:00809
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O3-galactosylthreonine.","definition_xrefs":["RESID:AA0401","PubMed:2673008"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosylated residue","termid":"MOD:00476"},{"relation_name":"is_a","term_name":"monohexosylated (Hex1)","termid":"MOD:00761"},{"relation_name":"is_a","term_name":"O-hexosylated threonine","termid":"MOD:01348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-galactosyl-L-threonine","synonyms":[{"name":"(2S,3R)-2-amino-3-(alpha-D-galactopyranosyloxy)butanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (Gal) threonine","type":"exact"},{"name":"CARBOHYD O-linked (Hex)","type":"exact"},{"name":"O-galactosyl-L-threonine","type":"exact"},{"name":"O-glycosylthreonine","type":"exact"},{"name":"O3-galactosylthreonine","type":"exact"},{"name":"OGalThr","type":"exact"}],"termid":"MOD:00809"}


id: MONDO:0022545
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Barnicoat Baraitser syndrome","synonyms":[{"name":"Barnicoat-Baraitser syndrome","type":"related"},{"name":"polysyndactyly overgrowth syndrome","type":"related"}],"termid":"MONDO:0022545","xrefs":{"Monarch":{"xref_id":"0022545"}}}


id: GO:0042153
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to proteins with similar structure/function to receptor protein tyrosine phosphatases.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete RPTP-like protein binding (obsolete GO:0042153)","synonyms":[{"name":"RPTP-like protein binding","type":"exact"},{"name":"receptor protein tyrosine phosphatase-like protein binding","type":"exact"}],"termid":"GO:0042153"}


id: PBO:0000159
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.6.99.1","termid":"PBO:0000159"}


id: PBO:0068062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 367","termid":"PBO:0068062"}


id: PBO:0039088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiotensin II receptor type 2","termid":"PBO:0039088"}


id: MONDO:0957921
data:
  {"annotated_genes":["SJAG_02701"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86007],"is_not":false,"summary":null,"term":"MONDO:0957921"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Cornelia de Lange syndrome","termid":"MONDO:0016033"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02701":null},"genotype_count":0,"is_obsolete":false,"name":"Cornelia de Lange syndrome 6","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0060970","MEDGEN:1848930","UMLS:C5882712","OMIM:620568"],"termid":"MONDO:0957921","terms_by_termid":{"MONDO:0957921":null},"xrefs":{"Monarch":{"xref_id":"0957921"}}}


id: PBO:0056455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARVEL domain containing 1","termid":"PBO:0056455"}


id: GO:0102177
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 24-methylenelophenol + O2 + NADH + H+ = 4alpha-hydroxymethyl-ergosta-7,24(241)-dien-3beta-ol + NAD + H2O.","definition_xrefs":["RHEA:58872","GOC:pz","PMID:11707264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"24-methylenelophenol methyl oxidase activity","secondary_identifiers":["MetaCyc:RXN-11930","EC:1.14.18.11"],"termid":"GO:0102177"}


id: GO:0061583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a colon epithelial cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell chemotaxis","termid":"GO:0060326"},{"relation_name":"is_a","term_name":"colon epithelial cell migration","termid":"GO:0061580"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"colon epithelial cell chemotaxis","termid":"GO:0061583"}


id: MONDO:0032894
data:
  {"annotated_genes":["SJAG_04021"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86435],"is_not":false,"summary":null,"term":"MONDO:0032894"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04021":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with epilepsy, spasticity, and brain atrophy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5394027","OMIM:618741","MEDGEN:1717952"],"synonyms":[{"name":"NEDESBA","type":"related"},{"name":"NEURODEVELOPMENTAL DISORDER WITH EPILEPSY, SPASTICITY, AND BRAIN ATROPHY","type":"related"}],"termid":"MONDO:0032894","terms_by_termid":{"MONDO:0032894":null},"xrefs":{"Monarch":{"xref_id":"0032894"}}}


id: PBO:0053948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1252","termid":"PBO:0053948"}


id: SO:0000929
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An mRNA that is edited.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"edited","termid":"SO:0000116"},{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"},{"relation_name":"is_a","term_name":"edited_transcript","termid":"SO:0000873"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"edited_mRNA","synonyms":[{"name":"edited mRNA","type":"exact"}],"termid":"SO:0000929"}


id: GO:0106119
data:
  {"annotated_genes":["SJAG_02104"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93640],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010895"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of a sterol biosynthetic process.","definition_xrefs":["GOC:BHF_miRNA","PMID:16459310","GOC:rph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of steroid biosynthetic process","termid":"GO:0010894"},{"relation_name":"is_a","term_name":"regulation of sterol biosynthetic process","termid":"GO:0106118"},{"relation_name":"negatively_regulates","term_name":"sterol biosynthetic process","termid":"GO:0016126"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02104":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"negative regulation of sterol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106119","terms_by_termid":{"GO:0010895":null}}


id: GO:1990181
data:
  {"annotated_genes":["SJAG_01139"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116858],"is_not":false,"summary":null,"term":"GO:1990181"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetyl-CoA from pantothenate via phosphopantothenate and CoA.","definition_xrefs":["GOC:mah","PMID:23091701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyl-CoA biosynthetic process","termid":"GO:0006085"},{"relation_name":"is_a","term_name":"pantothenate metabolic process","termid":"GO:0015939"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01139":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0044281","GO:0006766","GO:0006790","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"acetyl-CoA biosynthetic process from pantothenate","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"acetyl-CoA anabolism from pantothenate","type":"exact"},{"name":"acetyl-CoA formation from pantothenate","type":"related"},{"name":"acetyl-CoA synthesis from pantothenate","type":"related"}],"termid":"GO:1990181","terms_by_termid":{"GO:1990181":null}}


id: GO:0061595
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction 6-deoxy-6-sulfofructose-1-phosphate = 3-sulfolactaldehyde + dihydroxyacetone phosphate.","definition_xrefs":["PMID:24463506"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"6-deoxy-6-sulfofructose-1-phosphate aldolase activity","termid":"GO:0061595"}


id: MONDO:0958097
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital anomaly of superior vena cava","termid":"MONDO:0019829"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary superior vena cava aneurysm","secondary_identifiers":["Orphanet:652668"],"termid":"MONDO:0958097","xrefs":{"Monarch":{"xref_id":"0958097"}}}


id: MONDO:0040501
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome","termid":"MONDO:0020066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ehlers-danlos syndrome, arthrochalasia type, 2","secondary_identifiers":["DOID:0080728","OMIM:617821","GARD:16256"],"synonyms":[{"name":"EDS 7B","type":"related"},{"name":"EDS VIIB","type":"related"},{"name":"EDSARTH2","type":"related"},{"name":"Ehlers-Danlos syndrome, arthrochalasia type, 2","type":"related"},{"name":"Ehlers-Danlos syndrome, type VIIb, Autosomal dominant","type":"related"}],"termid":"MONDO:0040501","xrefs":{"Monarch":{"xref_id":"0040501"}}}


id: PBO:0064112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystin 1 like 2 (gene/pseudogene)","termid":"PBO:0064112"}


id: PBO:0047891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(6)(q26)","termid":"PBO:0047891"}


id: PBO:0076026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STK24 antisense RNA 1","termid":"PBO:0076026"}


id: GO:0070853
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a class VI myosin. The myosin VI heavy chain has a single IQ motif in the neck and a tail region with a coiled coil domain followed by a unique globular domain, a unique insertion that enables myosin VI to move towards the pointed or minus end of actin filaments.","definition_xrefs":["GOC:mah","PMID:15473855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin binding","termid":"GO:0017022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0008092","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"myosin VI binding","termid":"GO:0070853"}


id: PBO:0069564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 836, pseudogene","termid":"PBO:0069564"}


id: GO:0050469
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate + H2O = diphosphate + sabinene hydrate.","definition_xrefs":["RHEA:19565","EC:4.2.3.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"sabinene-hydrate synthase activity","secondary_identifiers":["KEGG_REACTION:R02006","MetaCyc:4.2.3.11-RXN"],"synonyms":[{"name":"geranyl-diphosphate diphosphate-lyase (cyclizing, sabinene-hydrate-forming)","type":"related"},{"name":"sabinene hydrate cyclase activity","type":"related"}],"termid":"GO:0050469"}


id: PBO:0113316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in regulation of pheromone response and mating; contains transmembrane domains; involved in secretion of proteins that lack classical secretory signal sequences; component of the detergent-insoluble glycolipid-enriched complexes (DIGs); NCE102 has a paralog, FHN1, that arose from the whole genome duplication","termid":"PBO:0113316"}


id: PBO:0029111
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_cell_cycle_phase","termid":"PBO:0029111"}


id: MONDO:0970964
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare intermediate form of open dysraphism between myelomeningocele and saccular limited dorsal myeloschisis without fulfilling the characteristics of one of these two diagnosis, characterized by stretched neurulated spinal cord attached at the dome of a sac. Partial cerebral signs of open dysraphism can be observed and the meningocele is usually poorly epithelialized.","definition_xrefs":["Orphanet:645378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"saccular spinal dysraphism with a stalk to the dome","termid":"MONDO:0968988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"myelic limited dorsal malformation","secondary_identifiers":["MEDGEN:1853142","UMLS:C5816714"],"termid":"MONDO:0970964","xrefs":{"Monarch":{"xref_id":"0970964"}}}


id: FYPO:0003593
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of ubiquitin-dependent protein degradation with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome, is abolished.","definition_xrefs":["PomBase:mah","GO:0031145"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein modification during vegetative growth","termid":"FYPO:0000544"},{"relation_name":"is_a","term_name":"decreased anaphase-promoting complex-dependent protein catabolic process","termid":"FYPO:0003585"},{"relation_name":"is_a","term_name":"abolished proteolysis during vegetative growth","termid":"FYPO:0005377"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002494","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0002274"],"is_obsolete":false,"name":"abolished anaphase-promoting complex-dependent protein catabolic process","synonyms":[{"name":"abolished anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process","type":"exact"},{"name":"abolished anaphase-promoting complex-dependent protein catabolic process during mitotic cell cycle","type":"related"},{"name":"abolished anaphase-promoting complex-dependent protein catabolic process during vegetative growth","type":"exact"},{"name":"abolished anaphase-promoting complex-dependent protein degradation","type":"exact"},{"name":"anaphase-promoting complex-dependent protein catabolic process abolished","type":"exact"}],"termid":"FYPO:0003593"}


id: FYPO:0007209
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cohesion between sister chromatids is decreased along the length of the chromosome arms during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah","PMID:31483748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic sister chromatid cohesion","termid":"FYPO:0006521"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000641","FYPO:0001985","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"decreased sister chromatid cohesion along chromosome arms during mitotic interphase","synonyms":[{"name":"decreased mitotic sister chromatid cohesion along chromosome arms during interphase","type":"exact"},{"name":"decreased sister chromatid cohesion along chromosome arms during interphase of mitotic cell cycle","type":"exact"},{"name":"decreased sister chromatid cohesion along chromosome arms during mitotic interphase during vegetative growth","type":"exact"},{"name":"reduced sister chromatid cohesion along chromosome arms during mitotic interphase","type":"exact"}],"termid":"FYPO:0007209"}


id: MONDO:0011366
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm that arises from the ovary and originates from germ cells. Representative examples include teratoma, embryonal carcinoma, yolk sac tumor, and dysgerminoma.","definition_xrefs":["NCIT:C3873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germ cell tumor","termid":"MONDO:0005040"},{"relation_name":"is_a","term_name":"ovarian neoplasm","termid":"MONDO:0021068"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian germ cell tumor","secondary_identifiers":["ICD9:239.5","OMIM:603737","EFO:1000419","MEDGEN:65958","DOID:2156","ONCOTREE:OGCT","SCTID:237059008","UMLS:C0238324"],"synonyms":[{"name":"germ cell neoplasm of ovary","type":"exact"},{"name":"germ cell neoplasm of the ovary","type":"exact"},{"name":"germ cell tumor of ovary","type":"exact"},{"name":"germ cell tumor of the ovary","type":"exact"},{"name":"germ cell tumour of ovary","type":"exact"},{"name":"germ cell tumour of the ovary","type":"exact"},{"name":"ovarian germ cell cancer","type":"related"},{"name":"ovarian germ cell neoplasm","type":"exact"},{"name":"ovarian germ cell tumor","type":"exact"},{"name":"ovary germ cell tumor","type":"exact"},{"name":"ovary germ cell tumour","type":"exact"}],"termid":"MONDO:0011366","xrefs":{"Monarch":{"xref_id":"0011366"}}}


id: GO:0045281
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A multimeric complex which consists of flavoprotein (subunit A ; InterPro:IPR003952), iron-sulfur protein (subunit B) and membrane-bound cytochrome b560 (subunit C; InterPro:IPR000701). In some Archaea, the membrane-bound subunits (C or C and D) do not necessarily contain heme. Membrane-bound subunits can bind or react with quinones.","definition_xrefs":["InterPro:IPR000701","GOC:kd"],"gene_count":0,"genotype_count":0,"name":"obsolete succinate dehydrogenase complex (obsolete GO:0045281)","termid":"GO:0045281"}


id: GO:0046369
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of galactose, the aldohexose galacto-hexose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactose metabolic process","termid":"GO:0006012"},{"relation_name":"is_a","term_name":"hexose biosynthetic process","termid":"GO:0019319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"galactose biosynthetic process","synonyms":[{"name":"galactose anabolism","type":"exact"},{"name":"galactose biosynthesis","type":"exact"},{"name":"galactose formation","type":"exact"},{"name":"galactose synthesis","type":"exact"}],"termid":"GO:0046369"}


id: GO:0061470
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized T cell acquires specialized features of a mature T follicular helper cell.","definition_xrefs":["GOC:dph","PMID:21572431"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T-helper cell differentiation","termid":"GO:0042093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T follicular helper cell differentiation","synonyms":[{"name":"T-helper follicular cell differentiation","type":"exact"}],"termid":"GO:0061470"}


id: MONDO:0006266
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sex cord-stromal tumor occurring in the testis and rarely in the ovary. It is predominantly or completely composed of Leydig cells which may contain crystals of Reinke. In males it usually presents as a painless testicular enlargement and it may be associated with gynecomastia and decreased libido. The majority of the cases have a benign clinical course. Approximately 10% of the cases have a malignant clinical course and metastasize. In females it may be associated with androgenic manifestations and it follows a benign clinical course.","definition_xrefs":["NCIT:C3188"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sex cord-stromal tumor","termid":"MONDO:0006055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Leydig cell tumor","secondary_identifiers":["MEDGEN:9747","DOID:2696","UMLS:C0023601","EFO:1000321","ICDO:8650/1","MESH:D007984"],"synonyms":[{"name":"Leydig cell neoplasm","type":"exact"},{"name":"Leydig cell tumor","type":"exact"},{"name":"Leydig cell tumor, undetermined","type":"related"},{"name":"interstitial cell neoplasm","type":"exact"},{"name":"interstitial cell tumor","type":"exact"},{"name":"interstitial cell tumour","type":"exact"}],"termid":"MONDO:0006266","xrefs":{"Monarch":{"xref_id":"0006266"}}}


id: GO:0160097
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle, is driven by ATP hydrolysis.","definition_xrefs":["PMID:25013168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA topoisomerase activity","termid":"GO:0003916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0140097","GO:0003674"],"is_obsolete":false,"name":"reverse gyrase activity","secondary_identifiers":["WIKIPEDIA:Reverse_gyrase"],"termid":"GO:0160097"}


id: PATO:0001529
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatiotemporal quality inhering in a cell.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"process quality","termid":"PATO:0001236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cellular spatiotemporal quality","termid":"PATO:0001529"}


id: PBO:0051689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INMT-MINDY4 readthrough (NMD candidate)","termid":"PBO:0051689"}


id: GO:0048360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving mucilage that occur in the root cap; mucilage is normally synthesized during root growth.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucilage metabolic process","termid":"GO:0010191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root cap mucilage metabolic process","synonyms":[{"name":"root cap mucilage metabolism","type":"exact"}],"termid":"GO:0048360"}


id: GO:0030196
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: formamide = H2O + hydrogen cyanide.","definition_xrefs":["EC:4.2.1.66","RHEA:21720"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"cyanide hydratase activity","secondary_identifiers":["MetaCyc:CYANIDE-HYDRATASE-RXN","KEGG_REACTION:R01408"],"synonyms":[{"name":"formamide dehydratase activity","type":"related"},{"name":"formamide hydro-lyase (cyanide-forming)","type":"related"},{"name":"formamide hydro-lyase activity","type":"related"}],"termid":"GO:0030196"}


id: PBO:0031509
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_cycle_arrest_in_mitotic_G1_phase_in_response_to_nitrogen_starvation","termid":"PBO:0031509"}


id: GO:0102426
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: myricetin 3-O-beta-D-glucopyranoside + UDP-alpha-D-glucose = myricetin 3-O-gentiobioside + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete myricetin-3-O-glucoside 1,6-glucosyltransferase activity (obsolete GO:0102426)","termid":"GO:0102426"}


id: GO:0032130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly of a sterol-rich region of the plasma membrane at the cell surface overlying the contractile ring.","definition_xrefs":["PMID:15517003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"mitotic cytokinetic process","termid":"GO:1902410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0000281"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0000281","GO:0044085","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"medial membrane band assembly","synonyms":[{"name":"medial membrane band formation","type":"related"}],"termid":"GO:0032130"}


id: FYPO:0003076
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the autophosphorylation of one or more specific proteins, or of specific protein sites, is normal (i.e. indistinguishable from wild type). Protein autophosphorylation is the phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.","definition_xrefs":["PomBase:mah","GO:0031952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein autophosphorylation during vegetative growth","synonyms":[{"name":"normal protein autophosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003076"}


id: MOD:00580
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because entry removed from Unimod. Remap potentially to MOD:00579 propionaldehyde +40","definition_xrefs":["Unimod:257"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00580 propionaldehyde +42 (obsolete MOD:00580)","termid":"MOD:00580"}


id: PBO:0047331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"filamin binding LIM protein 1","termid":"PBO:0047331"}


id: GO:1990837
data:
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id: GO:1990569
data:
  {"annotated_genes":["SJAG_00434"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77381],"is_not":false,"summary":null,"term":"GO:1990569"}]},"cv_name":"biological_process","definition":"The process in which UDP-N-acetylglucosamine is transported across a membrane.","definition_xrefs":["PMID:10788474"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"pyrimidine nucleotide-sugar transmembrane transport","termid":"GO:0090481"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00434":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"UDP-N-acetylglucosamine transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0015788"],"synonyms":[{"name":"UDP-N-acetylglucosamine transport","type":"related"}],"termid":"GO:1990569","terms_by_termid":{"GO:1990569":null}}


id: GO:0050584
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: linoleate + O2 = (9Z,11S,12Z)-11-hydroperoxyoctadeca-9,12-dienoate.","definition_xrefs":["EC:1.13.11.45","RHEA:18993"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"linoleate 11-lipoxygenase activity","secondary_identifiers":["KEGG_REACTION:R05718","MetaCyc:1.13.11.45-RXN"],"synonyms":[{"name":"linoleate dioxygenase activity","type":"related"},{"name":"linoleate:oxygen 11S-oxidoreductase activity","type":"related"},{"name":"manganese lipoxygenase activity","type":"related"}],"termid":"GO:0050584"}


id: PBO:0053205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galectin 3 binding protein","termid":"PBO:0053205"}


id: PBO:0075943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stromal antigen 2","termid":"PBO:0075943"}


id: SO:0001099
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with manganese ions.","definition_xrefs":["EBIBS:GAR","SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_metal_contact","termid":"SO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_manganese_ion_contact_site","secondary_identifiers":["BS:00140"],"synonyms":[{"name":"Mn_contact_site","type":"exact"},{"name":"polypeptide manganese ion contact site","type":"exact"}],"termid":"SO:0001099"}


id: PBO:0082849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Copper chaperone for superoxide dismutase Sod1p; involved in oxidative stress protection; Met-X-Cys-X2-Cys motif within N-terminus is involved in insertion of copper into Sod1p under conditions of copper deprivation; required for regulation of yeast copper genes in response to DNA-damaging agents; protein abundance increases in response to DNA replication stress; human homolog CCS can complement yeast ccs1 null mutant","termid":"PBO:0082849"}


id: GO:0009499
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete monocluster bacterial-type ferredoxin (obsolete GO:0009499)","synonyms":[{"name":"monocluster bacterial-type ferredoxin","type":"exact"}],"termid":"GO:0009499"}


id: PBO:0065610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTP4A1 pseudogene 4","termid":"PBO:0065610"}


id: FYPO:0003641
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of adenylate kinase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal adenylate kinase activity","termid":"FYPO:0003640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0000661","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased adenylate kinase activity","termid":"FYPO:0003641"}


id: PBO:0080515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASP family member 2","termid":"PBO:0080515"}


id: PBO:0064297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"perilipin 5","termid":"PBO:0064297"}


id: PBO:0056751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"METTL5 pseudogene 2","termid":"PBO:0056751"}


id: MONDO:0023124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial pulmonary arterial hypertension leucopenia and atrial septal defect","synonyms":[{"name":"familial PAH, leucopenia and ASD","type":"related"},{"name":"familial pulmonary arterial hypertension, leucopenia and ASD","type":"related"}],"termid":"MONDO:0023124","xrefs":{"Monarch":{"xref_id":"0023124"}}}


id: PBO:0088642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum EF hand protein","termid":"PBO:0088642"}


id: GO:0022012
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of subpallium cells in the forebrain, resulting in the expansion of a cell population.","definition_xrefs":["GOC:dph","GOC:jid","GO_REF:0000021","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell proliferation in forebrain","termid":"GO:0021846"},{"relation_name":"part_of","term_name":"subpallium development","termid":"GO:0021544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"subpallium cell proliferation in forebrain","termid":"GO:0022012"}


id: MONDO:0023221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gaucher ichthyosis restrictive dermopathy","termid":"MONDO:0023221","xrefs":{"Monarch":{"xref_id":"0023221"}}}


id: GO:0004352
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamate + H2O + NAD+ = 2-oxoglutarate + NH3 + NADH + H+.","definition_xrefs":["EC:1.4.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate dehydrogenase [NAD(P)+] activity","termid":"GO:0004353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"glutamate dehydrogenase (NAD+) activity","secondary_identifiers":["MetaCyc:GLUTAMATE-DEHYDROGENASE-RXN","RHEA:15133"],"synonyms":[{"name":"L-glutamate dehydrogenase","type":"broad"},{"name":"L-glutamate:NAD+ oxidoreductase (deaminating)","type":"related"},{"name":"NAD-dependent glutamate dehydrogenase activity","type":"related"},{"name":"NAD-dependent glutamic dehydrogenase activity","type":"related"},{"name":"NAD-glutamate dehydrogenase activity","type":"related"},{"name":"NAD-linked glutamate dehydrogenase activity","type":"related"},{"name":"NAD-linked glutamic dehydrogenase activity","type":"related"},{"name":"NAD-specific glutamate dehydrogenase activity","type":"related"},{"name":"NAD-specific glutamic dehydrogenase activity","type":"related"},{"name":"NAD:glutamate oxidoreductase activity","type":"related"},{"name":"NADH-linked glutamate dehydrogenase activity","type":"related"},{"name":"glutamate dehydrogenase (NAD)","type":"related"},{"name":"glutamate oxidoreductase activity","type":"related"},{"name":"glutamic acid dehydrogenase","type":"broad"},{"name":"glutamic dehydrogenase activity","type":"broad"}],"termid":"GO:0004352"}


id: PBO:0077232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane channel like 8","termid":"PBO:0077232"}


id: PBO:0076632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBL1XR1 antisense RNA 1","termid":"PBO:0076632"}


id: PBO:0080834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosyl-tRNA synthetase 2","termid":"PBO:0080834"}


id: GO:0009546
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The space between the plasma membrane and the desmotubule of a plasmodesma.","definition_xrefs":["PMID:29880547"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"},{"relation_name":"part_of","term_name":"plasmodesma","termid":"GO:0009506"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575"],"is_obsolete":false,"name":"plasmodesmatal cytoplasmic sleeve","synonyms":[{"name":"plasmodesmatal cytoplasmic annulus","type":"exact"}],"termid":"GO:0009546"}


id: PR:Q10719
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fus1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10719"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell fusion protein fus1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20G4.02c","synonyms":[{"name":"Spom972h-fus1","type":"exact"}],"termid":"PR:Q10719"}


id: MONDO:0011960
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A schizophrenia that has material basis in a mutation on chromosome 10q22.3.","definition_xrefs":["DOID:0070087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"schizophrenia","termid":"MONDO:0005090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039"],"is_obsolete":false,"name":"schizophrenia 11","secondary_identifiers":["MEDGEN:334205","OMIM:608078","UMLS:C1842605"],"synonyms":[{"name":"SCZD11","type":"exact"},{"name":"Sczd11","type":"related"},{"name":"schizophrenia 11","type":"exact"},{"name":"schizophrenia susceptibility locus, chromosome 10Q-related","type":"related"},{"name":"schizophrenia type 11","type":"exact"}],"termid":"MONDO:0011960","xrefs":{"Monarch":{"xref_id":"0011960"}}}


id: PBO:0072499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 28","termid":"PBO:0072499"}


id: PBO:0029666
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_phosphorylation_during_vegetative_growth","termid":"PBO:0029666"}


id: PBO:0073703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SKI proto-oncogene","termid":"PBO:0073703"}


id: MONDO:0019344
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Antisynthetase (AS) syndrome is a clinically heterogeneous form of idiopathic inflammatory myopathy characterized by myositis, arthralgia, Raynaud phenomenon, mechanic hands, interstitial lung disease (ILD), and serum autoantibodies to aminoacyl transfer RNA synthetases (anti-ARS).","definition_xrefs":["Orphanet:81"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acquired idiopathic inflammatory myopathy","termid":"MONDO:0020122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"antisynthetase syndrome","secondary_identifiers":["NORD:1926","UMLS:C2609059","EFO:1001982","GARD:735","icd11.foundation:1572057936","ICD9:279.49","DOID:0080744","MEDGEN:388567","MESH:C537778","SCTID:445187004","MedDRA:10068801"],"synonyms":[{"name":"AS syndrome","type":"exact"},{"name":"anti-Jo1 syndrome","type":"exact"}],"termid":"MONDO:0019344","xrefs":{"Monarch":{"xref_id":"0019344"}}}


id: FYPO:0005701
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the interphase microtubule organizing center does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000934"},{"relation_name":"is_a","term_name":"abnormal protein localization to microtubule organizing center","termid":"FYPO:0005702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to iMTOC","synonyms":[{"name":"abolished protein localisation to iMTOC","type":"exact"},{"name":"abolished protein localization to iMTOC during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to iMTOC during vegetative growth","type":"exact"},{"name":"abolished protein localization to interphase microtubule organizing center","type":"exact"},{"name":"protein absent from iMTOC","type":"related"},{"name":"protein localization to iMTOC abolished","type":"exact"}],"termid":"FYPO:0005701"}


id: GO:0090075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which the extent of muscle contraction is reduced. Muscle relaxation can involve a number of processes including the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases. In some muscles, calcium-independent pathways also play a role in muscle relaxation by decreasing the phosphorylation state of myosin light chain.","definition_xrefs":["PMID:19996365","GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle system process","termid":"GO:0003012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"relaxation of muscle","termid":"GO:0090075"}


id: GO:0004612
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + oxaloacetate = ADP + CO2 + H+ + phosphoenolpyruvate.","definition_xrefs":["RHEA:18617","EC:4.1.1.49"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoenolpyruvate carboxykinase activity","termid":"GO:0004611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"phosphoenolpyruvate carboxykinase (ATP) activity","secondary_identifiers":["MetaCyc:PEPCARBOXYKIN-RXN","KEGG_REACTION:R00341"],"synonyms":[{"name":"ATP:oxaloacetate carboxy-lyase (transphosphorylating)","type":"related"},{"name":"ATP:oxaloacetate carboxy-lyase (transphosphorylating; phosphoenolpyruvate-forming)","type":"related"},{"name":"PEPCK (ATP)","type":"related"},{"name":"PEPK","type":"related"},{"name":"phosphoenolpyruvate carboxylase (ATP)","type":"related"},{"name":"phosphoenolpyruvic carboxykinase","type":"broad"},{"name":"phosphopyruvate carboxykinase","type":"broad"},{"name":"phosphopyruvate carboxykinase (adenosine triphosphate)","type":"related"},{"name":"phosphopyruvate carboxylase (ATP)","type":"related"}],"termid":"GO:0004612"}


id: PBO:0063874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class F","termid":"PBO:0063874"}


id: GO:1901584
data:
  {"annotated_genes":["SJAG_00922"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107785],"is_not":false,"summary":null,"term":"GO:1901584"}]},"cv_name":"molecular_function","definition":"Enables the transfer of tetrapeptide from one side of a membrane to the other.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligopeptide transmembrane transporter activity","termid":"GO:0035673"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00922":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"tetrapeptide transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1901584","terms_by_termid":{"GO:1901584":null}}


id: PBO:0083167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps verified ORF PAD1/YDR538W","termid":"PBO:0083167"}


id: PBO:0054280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1671","termid":"PBO:0054280"}


id: MONDO:1011546
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Intervertebral disc disease that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intervertebral disc disease, non-human animal","termid":"MONDO:1011452"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intervertebral disc disease, dog","secondary_identifiers":["OMIA:000157-9615"],"termid":"MONDO:1011546","xrefs":{"Monarch":{"xref_id":"1011546"}}}


id: PBO:0031541
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-developmental_process_phenotype","termid":"PBO:0031541"}


id: GO:0018607
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-indanone + NADPH + 1/2 O2 = NADP+ + 3,4-dihydrocoumarin.","definition_xrefs":["UM-BBD_reactionID:r0417"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-indanone monooxygenase activity (obsolete GO:0018607)","termid":"GO:0018607"}


id: PBO:0041428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 8 open reading frame 74","termid":"PBO:0041428"}


id: PBO:0039793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1","termid":"PBO:0039793"}


id: MONDO:0019658
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete sporadic idiopathic steroid-resistant nephrotic syndrome with diffuse mesangial proliferation (obsolete MONDO:0019658)","secondary_identifiers":["Orphanet:93222"],"termid":"MONDO:0019658","xrefs":{"Monarch":{"xref_id":"0019658"}}}


id: GO:0102687
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose + dihydrozeatin = H+ + dihydrozeatin-7-N-glucose + UDP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete UDP-glucose:dihydrozeatin 7-N-glucosyltransferase activity (obsolete GO:0102687)","termid":"GO:0102687"}


id: MONDO:0032745
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"developmental delay with variable intellectual impairment and behavioral abnormalities","secondary_identifiers":["MEDGEN:1676192","GARD:18517","OMIM:618430","UMLS:C5193092"],"synonyms":[{"name":"DDVIBA","type":"related"},{"name":"DEVELOPMENTAL DELAY WITH VARIABLE INTELLECTUAL IMPAIRMENT AND BEHAVIORAL ABNORMALITIES","type":"related"},{"name":"developmental delay with variable intellectual impairment and behavioral abnormalities","type":"exact"}],"termid":"MONDO:0032745","xrefs":{"Monarch":{"xref_id":"0032745"}}}


id: MONDO:0010868
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited rippling muscle disease","termid":"MONDO:0020704"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"rippling muscle disease 1","secondary_identifiers":["DOID:0070308","MEDGEN:324987","GARD:9165","OMIM:600332","UMLS:C1838254"],"synonyms":[{"name":"RMD1","type":"exact"},{"name":"rippling muscle disease 1","type":"exact"},{"name":"rippling muscle disease, 1","type":"related"},{"name":"rippling muscle disease-1","type":"exact"}],"termid":"MONDO:0010868","xrefs":{"Monarch":{"xref_id":"0010868"}}}


id: MONDO:0033533
data:
  {"annotated_genes":["SJAG_05218"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85122],"is_not":false,"summary":null,"term":"MONDO:0033533"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined oxidative phosphorylation deficiency","termid":"MONDO:0000732"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05218":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"combined oxidative phosphorylation deficiency 45","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5436461","OMIM:618951","DOID:0112113","MEDGEN:1731010"],"synonyms":[{"name":"COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 45","type":"related"},{"name":"COXPD45","type":"related"}],"termid":"MONDO:0033533","terms_by_termid":{"MONDO:0033533":null},"xrefs":{"Monarch":{"xref_id":"0033533"}}}


id: SO:0001386
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A post translationally modified glycine amino acid feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_amino_acid_feature","termid":"SO:0001385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_glycine","secondary_identifiers":["MOD:00908"],"synonyms":[{"name":"ModGly","type":"exact"},{"name":"modified glycine","type":"exact"}],"termid":"SO:0001386"}


id: MONDO:0032910
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex I deficiency, nuclear type","termid":"MONDO:0100223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 1 deficiency, nuclear type 34","secondary_identifiers":["MEDGEN:1720533","GARD:16378","UMLS:C5394053","DOID:0112091","OMIM:618776"],"synonyms":[{"name":"MC1DN34","type":"related"},{"name":"MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 34","type":"related"}],"termid":"MONDO:0032910","xrefs":{"Monarch":{"xref_id":"0032910"}}}


id: FYPO:0000354
data:
  {"alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119011],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006433"},{"annotations":[119290,119302,119305,119293,119291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001784"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the endoplasmic reticulum is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endomembrane system morphology","termid":"FYPO:0000353"},{"relation_name":"output_of","term_name":"abnormal endoplasmic reticulum organization","termid":"FYPO:0000805"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00426":null,"SJAG_01906":null,"SJAG_02763":null,"SJAG_03940":null},"genotype_count":6,"genotypes_by_uniquename":{"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]},"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]},"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]},"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]},"nem1delta":{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]},"nem2delta":{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal endoplasmic reticulum morphology","references_by_uniquename":{"PMID:25318672":null,"PMID:26774782":null},"single_locus_annotated_genes":["SJAG_00426","SJAG_03940","SJAG_01906","SJAG_02763"],"single_locus_genotype_uniquenames":["nem1delta","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","nem2delta","ned1delta","ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal ER morphology","type":"exact"},{"name":"abnormal endoplasmic reticulum morphology during mitotic cell cycle","type":"related"},{"name":"abnormal endoplasmic reticulum morphology during vegetative growth","type":"exact"},{"name":"endoplasmic reticulum morphology: abnormal","type":"related"}],"termid":"FYPO:0000354","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000162":null,"FYPO:0001784":null,"FYPO:0006433":null,"FYPO_EXT:0000001":null}}


id: GO:0045177
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue.","definition_xrefs":["GOC:mah","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"apical part of cell","synonyms":[{"name":"apical region of cell","type":"exact"}],"termid":"GO:0045177"}


id: GO:0180041
data:
  {"annotated_genes":["SJAG_03115"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[102830],"is_not":false,"summary":null,"term":"GO:0180041"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an alpha-D-mannosyl residue from GDP-mannose into lipid-linked oligosaccharide, forming an alpha-(1->4)-D-mannosyl-D-mannose linkage.","definition_xrefs":["PMID:15635094","PMID:11226175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolipid mannosyltransferase activity","termid":"GO:0004376"},{"relation_name":"is_a","term_name":"alpha-1,4-mannosyltransferase activity","termid":"GO:0051751"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03115":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"glycolipid 1,4-alpha-mannosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"GPI-MT-I activity","type":"exact"},{"name":"glycosylphosphatidylinositol-mannosyltransferase I","type":"exact"}],"termid":"GO:0180041","terms_by_termid":{"GO:0180041":null}}


id: PBO:0031238
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_osmotic_stress","termid":"PBO:0031238"}


id: PBO:0082503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of DNA polymerase zeta; involved in translesion synthesis during post-replication repair; required for mutagenesis induced by DNA damage; involved in double-strand break repair; may be involved in meiosis; forms a complex with Rev7p, Pol31p and Pol32p","termid":"PBO:0082503"}


id: PBO:0038867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase tRNA specific 1","termid":"PBO:0038867"}


id: PATO:0002043
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An anterior-posterior diameter quality which is relatively large.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"increased diameter","termid":"PATO:0001714"},{"relation_name":"is_a","term_name":"anterior-posterior diameter","termid":"PATO:0002041"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased anterior-posterior diameter","synonyms":[{"name":"high anterior-posterior diameter","type":"exact"}],"termid":"PATO:0002043"}


id: GO:0003866
data:
  {"annotated_genes":["SJAG_00337"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72013],"is_not":false,"summary":null,"term":"GO:0003866"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate.","definition_xrefs":["RHEA:21256","EC:2.5.1.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00337":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016765"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016765"],"is_obsolete":false,"name":"3-phosphoshikimate 1-carboxyvinyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R03460","MetaCyc:2.5.1.19-RXN"],"synonyms":[{"name":"3-enol-pyruvoylshikimate-5-phosphate synthase activity","type":"related"},{"name":"5-enolpyruvylshikimate-3-phosphate synthase activity","type":"related"},{"name":"EPSP synthase activity","type":"related"},{"name":"phosphoenolpyruvate:3-phosphoshikimate 5-O-(1-carboxyvinyl)-transferase activity","type":"related"}],"termid":"GO:0003866","terms_by_termid":{"GO:0003866":null}}


id: MONDO:0002123
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Deposition of calcium in the tissues. It may be the result of a metabolic disorder or long-standing infection, or it may be associated with the presence of cancer.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium metabolic disease","termid":"MONDO:0005557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"calcinosis","secondary_identifiers":["ICD9:275.49","SCTID:6595006","HP:0003761","MEDGEN:709","icd11.foundation:1374802956","MESH:D002114","NCIT:C3672","UMLS:C0006663","DOID:182"],"synonyms":[{"name":"calcification","type":"exact"},{"name":"calcium deposit(s)","type":"exact"},{"name":"deposit(s), calcium","type":"exact"},{"name":"macrocalcification","type":"exact"},{"name":"pathologic calcification","type":"exact"},{"name":"pathologically calcified structure","type":"exact"}],"termid":"MONDO:0002123","xrefs":{"Monarch":{"xref_id":"0002123"}}}


