# terms

id: GO:0098904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in an atrioventricular node myocyte. This typically occurs via modulation of the activity or expression of voltage-gated ion channels.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell communication","termid":"GO:0010646"},{"relation_name":"is_a","term_name":"regulation of cardiac muscle cell action potential","termid":"GO:0098901"},{"relation_name":"regulates","term_name":"AV node cell action potential","termid":"GO:0086016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of AV node cell action potential","synonyms":[{"name":"regulation of AV node cardiac muscle cell action potential","type":"exact"},{"name":"regulation of atrioventricular node cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0098904"}


id: PBO:0048067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 16","termid":"PBO:0048067"}


id: GO:0098935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of organelles or molecules along microtubules in dendrites.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axo-dendritic transport","termid":"GO:0008088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"dendritic transport","synonyms":[{"name":"dendrite cargo transport","type":"exact"}],"termid":"GO:0098935"}


id: PBO:0083588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; YGR051C is not an essential gene","termid":"PBO:0083588"}


id: PBO:0081366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 204, pseudogene","termid":"PBO:0081366"}


id: GO:1990739
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of granulosa cells, resulting in the expansion of the granulosa cells population. A granulosa cell is a supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge.","definition_xrefs":["PMID:22383759"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell proliferation","termid":"GO:0050673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"granulosa cell proliferation","termid":"GO:1990739"}


id: PBO:0050763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 25","termid":"PBO:0050763"}


id: PBO:0070299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY1 pseudogene 5","termid":"PBO:0070299"}


id: PR:O74507
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC594.04c gene.","definition_xrefs":["UniProtKB:O74507","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C594.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC594.04c","synonyms":[{"name":"Spom972h-SPCC594.04c","type":"exact"}],"termid":"PR:O74507"}


id: GO:0018325
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transient phosphorylation of peptidyl-cysteine to form S-phospho-L-cysteine.","definition_xrefs":["RESID:AA0034"],"gene_count":0,"genotype_count":0,"name":"obsolete enzyme active site formation via S-phospho-L-cysteine (obsolete GO:0018325)","termid":"GO:0018325"}


id: PBO:0057792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3118-1","termid":"PBO:0057792"}


id: GO:0042933
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the directed movement of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine) from one side of a membrane to the other.","definition_xrefs":["PMID:8837459","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"siderophore-iron transmembrane transporter activity","termid":"GO:0015343"},{"relation_name":"is_a","term_name":"alcohol transmembrane transporter activity","termid":"GO:0015665"},{"relation_name":"is_a","term_name":"dipeptide transmembrane transporter activity","termid":"GO:0071916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"chrysobactin transmembrane transporter activity","synonyms":[{"name":"chrysobactin transporter activity","type":"related"}],"termid":"GO:0042933"}


id: MONDO:0007314
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chemodectoma, intraabdominal, with cutaneous angiolipomas","secondary_identifiers":["UMLS:C2930928","MESH:C535552","MEDGEN:443934","OMIM:118350"],"synonyms":[{"name":"abdominal chemodectomas with cutaneous angiolipomas","type":"related"},{"name":"chemodectoma, intraabdominal, with cutaneous angiolipomas","type":"exact"}],"termid":"MONDO:0007314","xrefs":{"Monarch":{"xref_id":"0007314"}}}


id: PBO:0081344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 146","termid":"PBO:0081344"}


id: MONDO:0032887
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with microcephaly, cortical malformations, and spasticity","secondary_identifiers":["MEDGEN:1684695","OMIM:618730","UMLS:C5231480"],"synonyms":[{"name":"NEDMCMS","type":"related"},{"name":"NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, CORTICAL MALFORMATIONS, AND SPASTICITY","type":"related"},{"name":"Vandervore-Schot Syndrome","type":"related"}],"termid":"MONDO:0032887","xrefs":{"Monarch":{"xref_id":"0032887"}}}


id: GO:0098966
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the extracellular matrix that lies within the perisynaptic space.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagen-containing extracellular matrix","termid":"GO:0062023"},{"relation_name":"part_of","term_name":"synapse-associated extracellular matrix","termid":"GO:0099535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"perisynaptic extracellular matrix","synonyms":[{"name":"extrasynaptic extracellular matrix","type":"exact"},{"name":"perisynaptic ECM","type":"exact"}],"termid":"GO:0098966"}


id: GO:1903459
data:
  {"annotated_genes":["SJAG_05197","SJAG_04190","SJAG_04877","SJAG_02818","SJAG_03495","SJAG_00814"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94996,102615,104015,104730,108910,117996],"is_not":false,"summary":null,"term":"GO:1903459"}]},"cv_name":"biological_process","definition":"Any lagging strand elongation that is involved in mitotic cell cycle DNA replication.","definition_xrefs":["GO_REF:0000060","PMID:1234","GOC:TermGenie","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lagging strand elongation","termid":"GO:0006273"},{"relation_name":"is_a","term_name":"DNA strand elongation involved in mitotic DNA replication","termid":"GO:1902983"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00814":null,"SJAG_02818":null,"SJAG_03495":null,"SJAG_04190":null,"SJAG_04877":null,"SJAG_05197":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006260","GO:0007049"],"is_obsolete":false,"name":"mitotic DNA replication lagging strand elongation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"lagging strand elongation involved in DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"lagging strand elongation involved in DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"lagging strand elongation involved in DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"lagging strand elongation involved in mitotic DNA replication","type":"exact"},{"name":"lagging strand elongation involved in mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"lagging strand elongation involved in nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"}],"termid":"GO:1903459","terms_by_termid":{"GO:1903459":null}}


id: MONDO:1010749
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Ehlers-Danlos syndrome in sheep in which the cause of the disease is a mutation in the ADAMTS2 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome, sheep","termid":"MONDO:1011497"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ehlers-Danlos syndrome, dermatosparaxis type, ADAMTS2-related, sheep","secondary_identifiers":["OMIA:000328-9940"],"synonyms":[{"name":"dEDS","type":"exact"}],"termid":"MONDO:1010749","xrefs":{"Monarch":{"xref_id":"1010749"}}}


id: PBO:0062937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P4HA2 antisense RNA 1","termid":"PBO:0062937"}


id: PBO:0045859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 49","termid":"PBO:0045859"}


id: PBO:0083645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin; EFT2 has a paralog, EFT1, that arose from the whole genome duplication","termid":"PBO:0083645"}


id: MONDO:0010161
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tyrosinemia type 1 (HTI) is an inborn error of tyrosine catabolism caused by defective activity of fumarylacetoacetate hydrolase (FAH) and is characterized by progressive liver disease, renal tubular dysfunction, porphyria-like crises and a dramatic improvement in prognosis following treatment with nitisinone.","definition_xrefs":["Orphanet:882"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"excluded_subClassOf","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"},{"relation_name":"is_a","term_name":"tyrosinemia","termid":"MONDO:0004741"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"tyrosinemia type I","secondary_identifiers":["OMIM:276700","SCTID:410056006","MedDRA:10069462","NANDO:1200788","GARD:2658","icd11.foundation:2029519782","MEDGEN:75688","UMLS:C0268490","NCIT:C98641","DOID:0050726","NANDO:2200468","NORD:1811"],"synonyms":[{"name":"FAH deficiency","type":"exact"},{"name":"Fah deficiency","type":"related"},{"name":"TYRSN1","type":"related"},{"name":"Tyrosinemia Type 1","type":"exact"},{"name":"fumarylacetoacetase deficiency","type":"exact"},{"name":"fumarylacetoacetate hydrolase deficiency","type":"exact"},{"name":"hepatorenal tyrosinemia","type":"exact"},{"name":"type I tyrosinemia","type":"exact"},{"name":"tyrosinemia type 1","type":"related"},{"name":"tyrosinemia type I","type":"exact"},{"name":"tyrosinemia, type 1","type":"related"},{"name":"tyrosinemia, type I","type":"related"}],"termid":"MONDO:0010161","xrefs":{"Monarch":{"xref_id":"0010161"}}}


id: PBO:0085758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase involved in oxidative stress response; promotes pseudohyphal growth via activation of Ubp3p phosphorylation; identified as suppressor of S. pombe cell cycle checkpoint mutations; RCK1 has a paralog, RCK2, that arose from the whole genome duplication","termid":"PBO:0085758"}


id: PBO:0073359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family E member 3","termid":"PBO:0073359"}


id: PATO:0002363
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A medium brown color with a metallic sheen, resembles the actual alloy bronze.","definition_xrefs":["PATO:LC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brown","termid":"PATO:0000952"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bronze","termid":"PATO:0002363"}


id: PBO:0040477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATXN1 antisense RNA 1","termid":"PBO:0040477"}


id: GO:0038112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-8 binding to its receptor on the surface of a cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:nhn","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to interleukin-8","termid":"GO:0098759"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"interleukin-8-mediated signaling pathway","synonyms":[{"name":"IL-8-mediated signaling pathway","type":"exact"},{"name":"interleukin-8-mediated signalling pathway","type":"exact"}],"termid":"GO:0038112"}


id: PBO:0005763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene wtf element Wtf22","termid":"PBO:0005763"}


id: SO:0000417
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A structurally or functionally defined protein region. In proteins with multiple domains, the combination of the domains determines the function of the protein. A region which has been shown to recur throughout evolution.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_structural_region","termid":"SO:0001070"},{"relation_name":"is_a","term_name":"polypeptide_conserved_region","termid":"SO:0100021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_domain","secondary_identifiers":["BS:00012","BS:00134","SO:0001069"],"synonyms":[{"name":"domain","type":"broad"},{"name":"polypeptide domain","type":"exact"},{"name":"polypeptide_structural_domain","type":"exact"},{"name":"structural domain","type":"broad"}],"termid":"SO:0000417"}


id: GO:0070590
data:
  {"annotated_genes":["SJAG_03483","SJAG_01321","SJAG_00974","SJAG_04238","SJAG_03057","SJAG_04184","SJAG_04236","SJAG_03587","SJAG_03013","SJAG_04868","SJAG_04483"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94222],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034413"},{"annotations":[87957,89998,91527,88450],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030476"},{"annotations":[72696],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034412"},{"annotations":[108873,103958,113886,117602,117594],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070591"}]},"cv_name":"biological_process","definition":"A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a spore wall. A spore wall is the specialized cell wall lying outside the cell membrane of a spore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall biogenesis","termid":"GO:0042546"},{"relation_name":"part_of","term_name":"sporulation resulting in formation of a cellular spore","termid":"GO:0030435"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00974":null,"SJAG_01321":null,"SJAG_03013":null,"SJAG_03057":null,"SJAG_03483":null,"SJAG_03587":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04238":null,"SJAG_04483":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0071554","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"spore wall biogenesis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0070590","terms_by_termid":{"GO:0030476":null,"GO:0034412":null,"GO:0034413":null,"GO:0070591":null}}


id: PATO:0002178
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position around a central point or axis.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalised","termid":"PATO:0000628"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mislocalised radially","termid":"PATO:0002178"}


id: PBO:0039010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AFF4 divergent transcript","termid":"PBO:0039010"}


id: GO:1903657
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of type IV pilus biogenesis.","definition_xrefs":["GOC:TermGenie","PMID:25049409","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell projection organization","termid":"GO:0031345"},{"relation_name":"is_a","term_name":"regulation of type IV pilus biogenesis","termid":"GO:1903656"},{"relation_name":"negatively_regulates","term_name":"type IV pilus assembly","termid":"GO:0043683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of type IV pilus biogenesis","synonyms":[{"name":"down regulation of TFP biogenesis","type":"exact"},{"name":"down regulation of type 4 pilus biogenesis","type":"exact"},{"name":"down regulation of type IV fimbria assembly","type":"exact"},{"name":"down regulation of type IV fimbria biogenesis","type":"exact"},{"name":"down regulation of type IV fimbriae assembly","type":"exact"},{"name":"down regulation of type IV fimbriae biogenesis","type":"exact"},{"name":"down regulation of type IV fimbrial assembly","type":"exact"},{"name":"down regulation of type IV fimbrial biogenesis","type":"exact"},{"name":"down regulation of type IV fimbrium assembly","type":"exact"},{"name":"down regulation of type IV fimbrium biogenesis","type":"exact"},{"name":"down regulation of type IV pilus biogenesis","type":"exact"},{"name":"down regulation of type IV pilus biosynthesis","type":"exact"},{"name":"down-regulation of TFP biogenesis","type":"exact"},{"name":"down-regulation of type 4 pilus biogenesis","type":"exact"},{"name":"down-regulation of type IV fimbria assembly","type":"exact"},{"name":"down-regulation of type IV fimbria biogenesis","type":"exact"},{"name":"down-regulation of type IV fimbriae assembly","type":"exact"},{"name":"down-regulation of type IV fimbriae biogenesis","type":"exact"},{"name":"down-regulation of type IV fimbrial assembly","type":"exact"},{"name":"down-regulation of type IV fimbrial biogenesis","type":"exact"},{"name":"down-regulation of type IV fimbrium assembly","type":"exact"},{"name":"down-regulation of type IV fimbrium biogenesis","type":"exact"},{"name":"down-regulation of type IV pilus biogenesis","type":"exact"},{"name":"down-regulation of type IV pilus biosynthesis","type":"exact"},{"name":"downregulation of TFP biogenesis","type":"exact"},{"name":"downregulation of type 4 pilus biogenesis","type":"exact"},{"name":"downregulation of type IV fimbria assembly","type":"exact"},{"name":"downregulation of type IV fimbria biogenesis","type":"exact"},{"name":"downregulation of type IV fimbriae assembly","type":"exact"},{"name":"downregulation of type IV fimbriae biogenesis","type":"exact"},{"name":"downregulation of type IV fimbrial assembly","type":"exact"},{"name":"downregulation of type IV fimbrial biogenesis","type":"exact"},{"name":"downregulation of type IV fimbrium assembly","type":"exact"},{"name":"downregulation of type IV fimbrium biogenesis","type":"exact"},{"name":"downregulation of type IV pilus biogenesis","type":"exact"},{"name":"downregulation of type IV pilus biosynthesis","type":"exact"},{"name":"inhibition of TFP biogenesis","type":"narrow"},{"name":"inhibition of type 4 pilus biogenesis","type":"narrow"},{"name":"inhibition of type IV fimbria assembly","type":"narrow"},{"name":"inhibition of type IV fimbria biogenesis","type":"narrow"},{"name":"inhibition of type IV fimbriae assembly","type":"narrow"},{"name":"inhibition of type IV fimbriae biogenesis","type":"narrow"},{"name":"inhibition of type IV fimbrial assembly","type":"narrow"},{"name":"inhibition of type IV fimbrial biogenesis","type":"narrow"},{"name":"inhibition of type IV fimbrium assembly","type":"narrow"},{"name":"inhibition of type IV fimbrium biogenesis","type":"narrow"},{"name":"inhibition of type IV pilus biogenesis","type":"narrow"},{"name":"inhibition of type IV pilus biosynthesis","type":"narrow"},{"name":"negative regulation of TFP biogenesis","type":"exact"},{"name":"negative regulation of type 4 pilus biogenesis","type":"exact"},{"name":"negative regulation of type IV fimbria assembly","type":"exact"},{"name":"negative regulation of type IV fimbria biogenesis","type":"exact"},{"name":"negative regulation of type IV fimbriae assembly","type":"exact"},{"name":"negative regulation of type IV fimbriae biogenesis","type":"exact"},{"name":"negative regulation of type IV fimbrial assembly","type":"exact"},{"name":"negative regulation of type IV fimbrial biogenesis","type":"exact"},{"name":"negative regulation of type IV fimbrium assembly","type":"exact"},{"name":"negative regulation of type IV fimbrium biogenesis","type":"exact"},{"name":"negative regulation of type IV pilus biosynthesis","type":"exact"}],"termid":"GO:1903657"}


id: GO:0018340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-serine to peptidyl-O-(sn-1-glycerophosphoryl)-L-serine.","definition_xrefs":["RESID:AA0264"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-O-(sn-1-glycerophosphoryl)-L-serine biosynthetic process from peptidyl-serine (obsolete GO:0018340)","synonyms":[{"name":"peptidyl-O-(sn-1-glycerophosphoryl)-L-serine anabolism from peptidyl-serine","type":"exact"},{"name":"peptidyl-O-(sn-1-glycerophosphoryl)-L-serine formation from peptidyl-serine","type":"exact"},{"name":"peptidyl-O-(sn-1-glycerophosphoryl)-L-serine synthesis from peptidyl-serine","type":"exact"}],"termid":"GO:0018340"}


id: MONDO:0021577
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mediastinal neural neoplasm","termid":"MONDO:0003098"},{"relation_name":"is_a","term_name":"mediastinal cancer","termid":"MONDO:0005843"},{"relation_name":"is_a","term_name":"peripheral nervous system cancer","termid":"MONDO:0021089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant mediastinal neural neoplasm","secondary_identifiers":["UMLS:C0349665","SCTID:278044006","MEDGEN:578863"],"synonyms":[{"name":"malignant neuroma of mediastinum","type":"exact"}],"termid":"MONDO:0021577","xrefs":{"Monarch":{"xref_id":"0021577"}}}


id: PBO:0046877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 8 member A2, pseudogene","termid":"PBO:0046877"}


id: PBO:0040126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and SOCS box containing 12","termid":"PBO:0040126"}


id: PBO:0082477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAP (cyclase-associated protein); N-terminus binds adenylate cyclase and facilitates activation by RAS; N-terminus forms novel hexameric star-shaped shuriken structures that directly catalyze cofilin-mediated severing of actin filaments; C-terminus binds and recycles cofilin bound, ADP-actin monomers, facilitating regulation of actin dynamics and cell morphogenesis; N- and C-termini can function as physically separate proteins; mCAP1 is the mouse homolog","termid":"PBO:0082477"}


id: GO:0043287
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a poly(3-hydroxyalkanoate), a polyester of 3-hydroxyacids produced as intracellular granules by a large variety of bacteria.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule binding","termid":"GO:0036094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"poly(3-hydroxyalkanoate) binding","synonyms":[{"name":"PHA binding","type":"exact"}],"termid":"GO:0043287"}


id: PBO:0056779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mex-3 RNA binding family member A","termid":"PBO:0056779"}


id: GO:2000774
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cellular senescence.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"regulation of cellular senescence","termid":"GO:2000772"},{"relation_name":"positively_regulates","term_name":"cellular senescence","termid":"GO:0090398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cellular senescence","termid":"GO:2000774"}


id: PBO:0004905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GET complex subunit Get1 (predicted)","termid":"PBO:0004905"}


id: PBO:0025445
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purine-pyrimidine metabolism disorders","termid":"PBO:0025445"}


id: PBO:0086812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YJR115W has a paralog, ECM13, that arose from the whole genome duplication","termid":"PBO:0086812"}


id: GO:0033867
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + Fas-activated serine/threonine protein = ADP + Fas-activated serine/threonine phosphoprotein.","definition_xrefs":["EC:2.7.11.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0004672","GO:0140096","GO:0016301","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"Fas-activated serine/threonine kinase activity","secondary_identifiers":["MetaCyc:2.7.11.8-RXN"],"synonyms":[{"name":"ATP:Fas-activated serine/threonine protein phosphotransferase activity","type":"related"},{"name":"FAST","type":"related"},{"name":"FASTK","type":"related"},{"name":"STK10","type":"related"}],"termid":"GO:0033867"}


id: PBO:0077682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNFSF12-TNFSF13 readthrough","termid":"PBO:0077682"}


id: PBO:0075775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRSF3 pseudogene 4","termid":"PBO:0075775"}


id: GO:0043700
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A tissue-specific, membrane-bounded cytoplasmic organelle within which pteridine pigments are synthesized and stored. Pterinosomes are synthesized in xanthophores and erythrophore cells and are yellow, orange or red in appearance.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment granule","termid":"GO:0048770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"pterinosome","termid":"GO:0043700"}


id: MONDO:0035525
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"blepharophimosis, ptosis, and epicanthus inversus syndrome","termid":"MONDO:0007201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005047","MONDO:0000426"],"is_obsolete":false,"name":"blepharophimosis-ptosis-epicanthus inversus syndrome type 2","secondary_identifiers":["MEDGEN:1842581","Orphanet:572361","UMLS:C5680363","GARD:10213"],"synonyms":[{"name":"BPES type 2","type":"exact"},{"name":"blepharophimosis-ptosis-epicanthus inversus syndrome without premature ovarian failure","type":"exact"}],"termid":"MONDO:0035525","xrefs":{"Monarch":{"xref_id":"0035525"}}}


id: MONDO:0002165
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the rectum. Representative examples of benign neoplasms include lipoma and leiomyoma. Representative examples of malignant neoplasms include carcinoma, lymphoma, and sarcoma. Rectal adenomas always exhibit epithelial dysplasia and are considered premalignant neoplasms.","definition_xrefs":["NCIT:C3350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rectal disorder","termid":"MONDO:0001593"},{"relation_name":"is_a","term_name":"colorectal neoplasm","termid":"MONDO:0005335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"rectal neoplasm","secondary_identifiers":["MEDGEN:11148","MESH:D012004","SCTID:126847008","UMLS:C0034885","DOID:1984"],"synonyms":[{"name":"neoplasm of rectum","type":"exact"},{"name":"neoplasm of the rectum","type":"exact"},{"name":"rectal neoplasm","type":"exact"},{"name":"rectal tumor","type":"exact"},{"name":"rectal tumour","type":"exact"},{"name":"rectum neoplasm","type":"exact"},{"name":"rectum neoplasm (disease)","type":"exact"},{"name":"rectum tumor","type":"exact"},{"name":"rectum tumour","type":"exact"},{"name":"tumor of rectum","type":"exact"},{"name":"tumor of the rectum","type":"exact"},{"name":"tumour of rectum","type":"exact"},{"name":"tumour of the rectum","type":"exact"}],"termid":"MONDO:0002165","xrefs":{"Monarch":{"xref_id":"0002165"}}}


id: GO:0032118
data:
  {"annotated_genes":["SJAG_00368","SJAG_04143","SJAG_03073"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101219,106387,111023],"is_not":false,"summary":null,"term":"GO:0032118"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the horsetail-astral array, a structure of astral microtubules that emanates from the spindle pole body during meiosis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization","termid":"GO:0000226"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"dynein-driven meiotic oscillatory nuclear movement","termid":"GO:0030989"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00368":null,"SJAG_03073":null,"SJAG_04143":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0140013","GO:0007010","GO:0000226","GO:0006810","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"horsetail-astral microtubule organization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"horsetail-astral microtubule array organization","type":"exact"},{"name":"horsetail-astral microtubule organisation","type":"exact"},{"name":"horsetail-astral microtubule organization and biogenesis","type":"related"}],"termid":"GO:0032118","terms_by_termid":{"GO:0032118":null}}


id: GO:1990371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A response that results in a state of tolerance to phenol.","definition_xrefs":["PMID:23356676","GOC:mengo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete process resulting in tolerance to phenol (obsolete GO:1990371)","termid":"GO:1990371"}


id: PBO:0087146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding subunit of the TRAMP nuclear RNA surveillance complex; involved in nuclear RNA processing and degradation; involved in TRAMP complex assembly as a bridge between Mtr4p and Trf4p; stimulates the poly(A) polymerase activity of Pap2p in vitro; has 5 zinc knuckle motifs; AIR2 has a paralog, AIR1, that arose from the whole genome duplication; Air2p and Air1p have nonredundant roles in regulation of substrate specificity of the exosome","termid":"PBO:0087146"}


id: PR:Q10487
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mfs1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10487"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transporter mfs1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.16c","synonyms":[{"name":"Spom972h-mfs1","type":"exact"}],"termid":"PR:Q10487"}


id: GO:0033602
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of dopamine.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dopamine secretion","termid":"GO:0014059"},{"relation_name":"is_a","term_name":"negative regulation of catecholamine secretion","termid":"GO:0033604"},{"relation_name":"negatively_regulates","term_name":"dopamine secretion","termid":"GO:0014046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of dopamine secretion","synonyms":[{"name":"down regulation of dopamine secretion","type":"exact"},{"name":"down-regulation of dopamine secretion","type":"exact"},{"name":"downregulation of dopamine secretion","type":"exact"},{"name":"inhibition of dopamine secretion","type":"narrow"}],"termid":"GO:0033602"}


id: PBO:0062804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxysterol binding protein like 3","termid":"PBO:0062804"}


id: PBO:0066565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhomboid 5 homolog 1","termid":"PBO:0066565"}


id: PBO:0004418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclease","termid":"PBO:0004418"}


id: FYPO:0006802
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which filamentous actin (F-actin) is present in a dispersed form in the cell. Normal F-actin structures (cables and cortical patches) may or may not also be present.","definition_xrefs":["PomBase:mah","PMID:9786952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton morphology during vegetative growth","termid":"FYPO:0000350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0004803"],"is_obsolete":false,"name":"dispersed filamentous actin","synonyms":[{"name":"delocalised F-actin","type":"exact"},{"name":"delocalised actin","type":"related"},{"name":"delocalized F-actin","type":"exact"},{"name":"dispersed F-actin","type":"exact"},{"name":"dispersed actin localization during vegetative growth","type":"exact"},{"name":"dispersed filamentous actin during mitotic cell cycle","type":"related"},{"name":"dispersed filamentous actin during vegetative growth","type":"exact"},{"name":"dispersed filamentous actin in cell","type":"exact"}],"termid":"FYPO:0006802"}


id: PBO:0056067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"latexin","termid":"PBO:0056067"}


id: PBO:0074036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC25A21 antisense RNA 1","termid":"PBO:0074036"}


id: PR:000050220
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3.3, initiator methionine removed form (Schizosaccharomyces pombe) that has been ubiquitinated on Lys-15. Example: UniProtKB:P10651, 2-136, Lys-15, MOD:01148.","definition_xrefs":["PRO:CNA","PMID:31468675","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fungal histone H3.3, initiator methionine removed form (Schizosaccharomyces pombe)","termid":"PR:000027598"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hht3/Ubiq:(K14)","pombase_gene_id":"SPBC1105.11c","synonyms":[{"name":"H3K14ub","type":"related"},{"name":"PomBase_original_PRO_term_name: histone H3.3, initiator methionine removed K14-ubiquitinated form (Schizosaccharomyces pombe)","type":"exact"},{"name":"hht3/InitMet-/Ubiq:(K15)","type":"exact"},{"name":"hht3/Ubiq:(K14)","type":"exact"}],"termid":"PR:000050220"}


id: GO:0021751
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a salivary nucleus over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph","GOC:cls","GO_REF:0000021","GOC:curators","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural nucleus development","termid":"GO:0048857"},{"relation_name":"part_of","term_name":"pons development","termid":"GO:0021548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"salivary nucleus development","termid":"GO:0021751"}


id: MONDO:1012072
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dystrophic epidermolysis bullosa, non-human animal","termid":"MONDO:1011737"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystrophic epidermolysis bullosa, sheep","secondary_identifiers":["OMIA:000341-9940"],"termid":"MONDO:1012072","xrefs":{"Monarch":{"xref_id":"1012072"}}}


id: PBO:0076015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STK4 divergent transcript","termid":"PBO:0076015"}


id: PBO:0086470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative mitochondrial protein of unknown function","termid":"PBO:0086470"}


id: MONDO:0006981
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Subacute inflammation of the endocardium. Streptococcus viridans is the usual etiologic agent of subacute bacterial endocarditis. The distinction between \\\"acute\\\" and \\\"subacute\\\" endocarditis has traditionally been made based on the pathogenic organism and clinical presentation.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infective endocarditis","termid":"MONDO:0000565"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"subacute bacterial endocarditis","secondary_identifiers":["EFO:1001193","NCIT:C34583","SCTID:73774007","MESH:D004698","UMLS:C0014122","DOID:4562","MEDGEN:41780","icd11.foundation:933942548","MedDRA:10042271"],"synonyms":[{"name":"SBE","type":"exact"},{"name":"SBE - Subacute bacterial endocarditis","type":"exact"},{"name":"Subacute bacterial endocarditis","type":"exact"},{"name":"Subacute endocarditis, lenta","type":"exact"},{"name":"endocarditis lenta","type":"exact"}],"termid":"MONDO:0006981","xrefs":{"Monarch":{"xref_id":"0006981"}}}


id: PR:Q09170
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase Chk2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"serine/threonine-protein kinase cds1 (Schizosaccharomyces pombe)","termid":"PR:000030002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase cds1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18B5.11c","secondary_identifiers":["UniProtKB:Q09170"],"synonyms":[{"name":"Spom972h-CHEK2","type":"exact"}],"termid":"PR:Q09170"}


id: PBO:0001596
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"destabilized in the absence of Pcf1","termid":"PBO:0001596"}


id: GO:0030068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete lytic viral life cycle (obsolete GO:0030068)","synonyms":[{"name":"lytic viral life cycle","type":"exact"}],"termid":"GO:0030068"}


id: MONDO:0031447
data:
  {"annotated_genes":["SJAG_02509","SJAG_04003","SJAG_04387"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86391],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0800047"},{"annotations":[86710,86709],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030827"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited thrombocytopenia","termid":"MONDO:0100241"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02509":null,"SJAG_04003":null,"SJAG_04387":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"macrothrombocytopenia, isolated","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIMPS:613112"],"termid":"MONDO:0031447","terms_by_termid":{"MONDO:0030827":null,"MONDO:0800047":null},"xrefs":{"Monarch":{"xref_id":"0031447"}}}


id: GO:0015660
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of formate from the inside of the cell to the outside of the cell across a membrane.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formate transmembrane transporter activity","termid":"GO:0015499"},{"relation_name":"is_a","term_name":"efflux transmembrane transporter activity","termid":"GO:0015562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"formate efflux transmembrane transporter activity","secondary_identifiers":["GO:0015509"],"synonyms":[{"name":"formate efflux permease activity","type":"related"}],"termid":"GO:0015660"}


id: PBO:0050054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, U (pseudogene)","termid":"PBO:0050054"}


id: MONDO:1012745
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant cystinuria that occurs in dogs due to a mutation in the SLC7A9 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal disease, dog","termid":"MONDO:1012235"},{"relation_name":"is_a","term_name":"cystinuria, non-human animal","termid":"MONDO:1012968"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autosomal dominant cystinuria, SLC7A9-related, dog","secondary_identifiers":["OMIA:001880-9615"],"synonyms":[{"name":"cystinuria, type II - B, dog","type":"related"}],"termid":"MONDO:1012745","xrefs":{"Monarch":{"xref_id":"1012745"}}}


id: GO:1901432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of response to cycloalkane.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of response to cycloalkane","termid":"GO:1901431"},{"relation_name":"negatively_regulates","term_name":"response to cycloalkane","termid":"GO:0014071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of response to cycloalkane","synonyms":[{"name":"down regulation of response to cycloalkane","type":"exact"},{"name":"down-regulation of response to cycloalkane","type":"exact"},{"name":"downregulation of response to cycloalkane","type":"exact"},{"name":"inhibition of response to cycloalkane","type":"narrow"}],"termid":"GO:1901432"}


id: PR:O94364
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wpl1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wings apart-like protein homolog 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC428.17c","synonyms":[{"name":"Spom972h-wpl1","type":"exact"}],"termid":"PR:O94364"}


id: GO:1903502
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of translation repressor activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000088","PMID:14723848","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"translation repressor complex","termid":"GO:1903502"}


id: GO:0045961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the consistent predetermined time point at which an integrated living unit or organism progresses from an initial condition to a later condition and decreases the rate at which this time point is reached.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of development, heterochronic","termid":"GO:0040034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of development, heterochronic","synonyms":[{"name":"down regulation of development, heterochronic","type":"exact"},{"name":"down-regulation of development, heterochronic","type":"exact"},{"name":"downregulation of development, heterochronic","type":"exact"},{"name":"inhibition of development, heterochronic","type":"narrow"}],"termid":"GO:0045961"}


id: PBO:0030653
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_methylamine","termid":"PBO:0030653"}


id: PR:O13807
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA damage-binding protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00829","PANTHER:PTHR10644:SF3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA damage-binding protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.10c","secondary_identifiers":["UniProtKB:O13807"],"synonyms":[{"name":"Spom972h-DDB1","type":"exact"},{"name":"damage-specific DNA-binding protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13807"}


id: MONDO:0015615
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic gastroenterological disease (obsolete MONDO:0015615)","secondary_identifiers":["Orphanet:165652"],"synonyms":[{"name":"rare genetic gastrointestinal system disease","type":"exact"}],"termid":"MONDO:0015615","xrefs":{"Monarch":{"xref_id":"0015615"}}}


id: MONDO:0024281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of conditions used to describe polyarthritis occurring in children.","definition_xrefs":["NCIT:C26979"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyarticular arthritis","termid":"MONDO:0024280"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"juvenile chronic polyarthritis","secondary_identifiers":["MEDGEN:140816","UMLS:C0409667"],"synonyms":[{"name":"juvenile chronic polyarthritis","type":"exact"}],"termid":"MONDO:0024281","xrefs":{"Monarch":{"xref_id":"0024281"}}}


id: PR:O14169
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pgc1 gene.","definition_xrefs":["UniProtKB:O14169","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylglycerol phospholipase C (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4D7.02c","synonyms":[{"name":"Spom972h-pgc1","type":"exact"}],"termid":"PR:O14169"}


id: GO:0046872
data:
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id: PBO:0090744
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id: GO:0045196
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id: PBO:0057312
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id: PBO:0047451
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id: MONDO:0004865
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id: PR:O13775
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id: SO:0001847
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id: MONDO:0042902
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id: SO:1000085
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id: PBO:0034609
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id: GO:0086065
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id: FYPO:0004228
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id: GO:0035672
data:
  {"annotated_genes":["SJAG_02139","SJAG_05182","SJAG_05213","SJAG_02602","SJAG_03577","SJAG_03497","SJAG_01344","SJAG_01983","SJAG_01660","SJAG_00922"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71585],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140206"},{"annotations":[118155,118156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035442"},{"annotations":[95284],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098709"},{"annotations":[112938],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160007"},{"annotations":[95832,96823,118014],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071996"},{"annotations":[75272],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090374"},{"annotations":[95833,96824,118015],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036246"},{"annotations":[107784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901583"},{"annotations":[102800],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140207"}]},"cv_name":"biological_process","definition":"The process in which an oligopeptide is transported across a membrane. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.","definition_xrefs":["GOC:vw","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligopeptide transport","termid":"GO:0006857"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00922":null,"SJAG_01344":null,"SJAG_01660":null,"SJAG_01983":null,"SJAG_02139":null,"SJAG_02602":null,"SJAG_03497":null,"SJAG_03577":null,"SJAG_05182":null,"SJAG_05213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"oligopeptide transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"oligopeptide membrane transport","type":"exact"}],"termid":"GO:0035672","terms_by_termid":{"GO:0035442":null,"GO:0036246":null,"GO:0071996":null,"GO:0090374":null,"GO:0098709":null,"GO:0140206":null,"GO:0140207":null,"GO:0160007":null,"GO:1901583":null}}


id: MONDO:0007782
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperthermia, cutaneous, with headaches and nausea","secondary_identifiers":["MEDGEN:374453","MESH:C564156","OMIM:145590","UMLS:C1840373"],"synonyms":[{"name":"farmer syndrome","type":"related"},{"name":"hyperthermia, cutaneous, with headaches and nausea","type":"exact"}],"termid":"MONDO:0007782","xrefs":{"Monarch":{"xref_id":"0007782"}}}


id: PR:O14289
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- leu2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-isopropylmalate dehydratase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9E9.03","synonyms":[{"name":"IPMI (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-leu2","type":"exact"},{"name":"alpha-IPM isomerase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"isopropylmalate isomerase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14289"}


id: GO:0018636
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phenanthrene + O2 + NADH + H+ = H2O + NAD+ + phenanthrene-9,10-oxide.","definition_xrefs":["PMID:1599252","UM-BBD_reactionID:r0495"],"gene_count":0,"genotype_count":0,"name":"obsolete phenanthrene 9,10-monooxygenase activity (obsolete GO:0018636)","termid":"GO:0018636"}


id: PBO:0064904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 3 catalytic subunit gamma","termid":"PBO:0064904"}


id: GO:0046461
data:
  {"annotated_genes":["SJAG_02089","SJAG_02100","SJAG_02543","SJAG_03604","SJAG_01036"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74097],"is_not":false,"summary":null,"term":"GO:0046461"},{"annotations":[117397,71055,91651,98252],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019433"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of neutral lipids, lipids only soluble in solvents of very low polarity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutral lipid metabolic process","termid":"GO:0006638"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01036":null,"SJAG_02089":null,"SJAG_02100":null,"SJAG_02543":null,"SJAG_03604":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"neutral lipid catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"neutral lipid breakdown","type":"exact"},{"name":"neutral lipid catabolism","type":"exact"},{"name":"neutral lipid degradation","type":"exact"}],"termid":"GO:0046461","terms_by_termid":{"GO:0019433":null,"GO:0046461":null}}


id: RO:0001025
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"a relation between two independent continuants, the target and the location, in which the target is entirely within the location","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"located_in","termid":"RO:0001025"}


id: GO:0035247
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of a methyl group onto a terminal nitrogen (omega nitrogen) atom of an arginine residue in a protein.","definition_xrefs":["RESID:AA0068","RESID:AA0069","PMID:14705965","RESID:AA0067"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-arginine N-methylation","termid":"GO:0035246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-arginine omega-N-methylation","termid":"GO:0035247"}


id: FYPO:0007490
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a mannosyltransferase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal mannosyltransferase activity","termid":"FYPO:0007490"}


id: FYPO:0006481
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cohesin ssDNA (lagging strand) loading is increased during the mitotic cell cycle. Cohesin ssDNA (lagging strand) loading is the topological linking of a cohesin ring complex to single-stranded DNA, i.e. the lagging strand, in chromatin.","definition_xrefs":["PomBase:mah","GO:0062022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of molecular function","termid":"FYPO:0000682"},{"relation_name":"is_a","term_name":"increased protein localization to chromatin during vegetative growth","termid":"FYPO:0003011"},{"relation_name":"is_a","term_name":"abnormal cohesin loading","termid":"FYPO:0006479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000641"],"is_obsolete":false,"name":"increased mitotic cohesin ssDNA (lagging strand) loading","synonyms":[{"name":"increased cohesin ssDNA (lagging strand) loading during mitotic cell cycle","type":"exact"},{"name":"increased cohesin ssDNA (lagging strand) loading during vegetative growth","type":"exact"},{"name":"increased mitotic cohesin association with ssDNA (lagging strand) chromatin","type":"exact"},{"name":"increased mitotic cohesin localization to ssDNA (lagging strand) chromatin","type":"exact"},{"name":"increased second-DNA capture","type":"exact"}],"termid":"FYPO:0006481"}


id: GO:0071795
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein upon poly-ubiquitination formed by linkages between lysine residues at position 11 in the target protein.","definition_xrefs":["PMID:18775313","GOC:sp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyubiquitin modification-dependent protein binding","termid":"GO:0031593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"K11-linked polyubiquitin modification-dependent protein binding","termid":"GO:0071795"}


id: MONDO:0004233
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare aggressive rhabdomyosarcoma occurring in children. The neoplasm is characterized by the presence of bizarre round, spindle, and polygonal cells.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"childhood malignant neoplasm","termid":"MONDO:0006517"},{"relation_name":"is_a","term_name":"pleomorphic rhabdomyosarcoma","termid":"MONDO:0017386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"childhood pleomorphic rhabdomyosarcoma","secondary_identifiers":["UMLS:C0279614","MEDGEN:76002","DOID:7463","NCIT:C7959"],"synonyms":[{"name":"Pleomorphic rhabdomyosarcoma","type":"exact"},{"name":"childhood anaplastic rhabdomyosarcoma","type":"exact"},{"name":"paediatric pleomorphic rhabdomyosarcoma","type":"exact"},{"name":"pediatric pleomorphic rhabdomyosarcoma","type":"exact"},{"name":"pleomorphic childhood rhabdomyosarcoma","type":"exact"},{"name":"pleomorphic rhabdomyosarcoma of childhood","type":"exact"}],"termid":"MONDO:0004233","xrefs":{"Monarch":{"xref_id":"0004233"}}}


id: PBO:0083185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the Ty2 LTR YBLWdelta2; YBL107W-A has a paralog, YER138W-A, that arose from a single-locus duplication","termid":"PBO:0083185"}


id: GO:0061263
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a glomerular mesangial cell in the mesonephros over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular mesangial cell development","termid":"GO:0072144"},{"relation_name":"part_of","term_name":"mesonephric glomerular mesangial cell differentiation","termid":"GO:0061259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric glomerular mesangial cell development","termid":"GO:0061263"}


id: MONDO:0016979
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"MRCS syndrome is a rare, genetic retinal dystrophy disorder characterized by bilateral microcornea, rod-cone dystrophy, cataracts and posterior staphyloma, in the absence of other systemic features. Night blindness is typically the presenting manifestation and nystagmus, strabismus, astigmatism and angle closure glaucoma may be associated findings. Progressive visual acuity deterioration, due to pulverulent-like cataracts, results in poor vision ranging from no light perception to 20/400.","definition_xrefs":["Orphanet:263347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"MRCS syndrome","secondary_identifiers":["icd11.foundation:392681472","MEDGEN:1666962","UMLS:C4749856","GARD:17255"],"synonyms":[{"name":"microcornea-rod-cone dystrophy-cataract-posterior staphyloma syndrome","type":"exact"}],"termid":"MONDO:0016979","xrefs":{"Monarch":{"xref_id":"0016979"}}}


id: GO:0047021
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + prostaglandin E(1) = 15-dehydro-prostaglandin E1 + H+ + NADPH.","definition_xrefs":["EC:1.1.1.197","RHEA:11636"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"15-hydroxyprostaglandin dehydrogenase (NADP+) activity","secondary_identifiers":["MetaCyc:1.1.1.197-RXN","KEGG_REACTION:R04552"],"synonyms":[{"name":"(13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate:NADP+ 15-oxidoreductase activity","type":"related"},{"name":"NADP-dependent 15-hydroxyprostaglandin dehydrogenase","type":"broad"},{"name":"NADP-linked 15-hydroxyprostaglandin dehydrogenase","type":"broad"},{"name":"NADP-specific 15-hydroxyprostaglandin dehydrogenase","type":"broad"},{"name":"type II 15-hydroxyprostaglandin dehydrogenase activity","type":"related"}],"termid":"GO:0047021"}


id: FYPO:0002184
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of ungerminated spores, germinated spores and tapered vegetative cells. The tapered cells arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including spores, germinated spores and tapered cells (obsolete FYPO:0002184)","synonyms":[{"name":"inviable mixed population including spores, germinated spores and bottle/skittle cells","type":"exact"},{"name":"inviable mixed population including spores, germinated spores and skittle-shaped cells","type":"exact"}],"termid":"FYPO:0002184"}


id: PBO:0116220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-oxoprolinase (ATP-hydrolyzing), Oxp2","termid":"PBO:0116220"}


id: GO:0044806
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process by which G-quadruplex (also known as G4) DNA, which is a four-stranded DNA structure held together by guanine base pairing, is unwound or 'melted'.","definition_xrefs":["GOC:jl","PMID:23657261","GOC:se"],"gene_count":0,"genotype_count":0,"name":"obsolete G-quadruplex DNA unwinding (obsolete GO:0044806)","termid":"GO:0044806"}


id: PBO:0088398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin Snx3","termid":"PBO:0088398"}


id: PATO:0002303
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of an object that has a value that is decreased compared to normal or average.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"physical object quality","termid":"PATO:0001241"},{"relation_name":"is_a","term_name":"decreased quality","termid":"PATO:0002301"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased object quality","termid":"PATO:0002303"}


id: PBO:0090380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial [2Fe-2S] cluster assembly frataxin Fxn1","termid":"PBO:0090380"}


id: PBO:0056982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 30b","termid":"PBO:0056982"}


id: FYPO:0003371
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the actomyosin contractile ring is abolished, and the protein is present in the cytoplasm instead.","definition_xrefs":["PomBase:mah","PMID:18256290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to actomyosin contractile ring","termid":"FYPO:0002561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000631","FYPO:0000032","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to actomyosin contractile ring, with protein mislocalized to cytoplasm","synonyms":[{"name":"abolished protein localisation to actomyosin contractile ring, with protein mislocalized to cytoplasm","type":"exact"},{"name":"abolished protein localization to actomyosin contractile ring, with protein mislocalized to cytoplasm during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to actomyosin contractile ring, with protein mislocalized to cytoplasm, during vegetative growth","type":"exact"},{"name":"abolished protein localization to contractile ring, with protein mislocalized to cytoplasm","type":"exact"},{"name":"abolished protein localization to cytokinetic contractile ring, with protein mislocalized to cytoplasm","type":"exact"},{"name":"abolished protein localization to mitotic contractile ring, with protein mislocalized to cytoplasm","type":"exact"},{"name":"abolished protein recruitment to actomyosin contractile ring, with protein mislocalized to cytoplasm","type":"related"},{"name":"protein localization to actomyosin contractile ring abolished, with protein mislocalized to cytoplasm","type":"exact"}],"termid":"FYPO:0003371"}


id: MONDO:0003988
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare lymphoma that arises from the bone or soft tissue of the sternum.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sternum cancer","termid":"MONDO:0003273"},{"relation_name":"is_a","term_name":"primary bone lymphoma","termid":"MONDO:0017814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"sternum lymphoma","secondary_identifiers":["MEDGEN:277770","DOID:6762","NCIT:C6716","UMLS:C1336504"],"synonyms":[{"name":"lymphoma of sternum","type":"exact"},{"name":"lymphoma of the sternum","type":"exact"},{"name":"primary sternal lymphoma","type":"exact"},{"name":"sternal lymphoma","type":"exact"},{"name":"sternum lymphoma","type":"exact"}],"termid":"MONDO:0003988","xrefs":{"Monarch":{"xref_id":"0003988"}}}


id: GO:1990053
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: DNA containing 5-methylcytosine + H2O = DNA with abasic site + 5-methylcytosine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the DNA 5-methylcytosine and the deoxyribose sugar to remove the 5-methylcytosine, leaving an abasic site.","definition_xrefs":["PMID:23316050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkylbase DNA N-glycosylase activity","termid":"GO:0003905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016787","GO:0016798","GO:0003674","GO:0003824","GO:0140097"],"is_obsolete":false,"name":"DNA-5-methylcytosine glycosylase activity","termid":"GO:1990053"}


id: FYPO:0003458
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity does not increase as a result of a salt stress stimulus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal alpha,alpha-trehalase activity","termid":"FYPO:0001479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0001985","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"alpha,alpha-trehalase activity increase abolished during cellular response to salt stress","synonyms":[{"name":"absent increase in trehalase activity in response to salt stress","type":"exact"},{"name":"neutral trehalase activity increase abolished during cellular response to salt stress","type":"exact"},{"name":"trehalase activity increase abolished during cellular response to salt stress","type":"broad"}],"termid":"FYPO:0003458"}


id: PBO:0017875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GID complex subunit Gid9 (predicted)","termid":"PBO:0017875"}


id: PATO:0002129
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplastic","termid":"PATO:0002011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neoplastic, invasive","termid":"PATO:0002129"}


id: MONDO:0018303
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete generalized isolated dystonia (obsolete MONDO:0018303)","termid":"MONDO:0018303","xrefs":{"Monarch":{"xref_id":"0018303"}}}


id: GO:0047835
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-tryptophan + acetyl-CoA = N-acetyl-D-tryptophan + CoA + H+.","definition_xrefs":["RHEA:10060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-amino-acid N-acetyltransferase activity","termid":"GO:0047812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"D-tryptophan N-acetyltransferase activity","secondary_identifiers":["KEGG_REACTION:R02481","EC:2.3.1.34","MetaCyc:D-TRYPTOPHAN-N-ACETYLTRANSFERASE-RXN"],"synonyms":[{"name":"D-tryptophan acetyltransferase activity","type":"related"},{"name":"acetyl-CoA-D-tryptophan-alpha-N-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:D-tryptophan N-acetyltransferase activity","type":"related"}],"termid":"GO:0047835"}


id: GO:0102531
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + an ecdysteroid 22-phosphate = phosphate + an ecdysteroid. Also has activity towards other ecdysteriod phosphates including 20-hydroxyecdysone 22-phosphate (20E22P) and 2-deoxyecdysone 22-phosphate (2dE22P).","definition_xrefs":["MetaCyc:RXN-14734","PMID:12721294"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"ecdysteroid-phosphate phosphatase activity","synonyms":[{"name":"ecdysone-phosphate phosphatase activity","type":"narrow"}],"termid":"GO:0102531"}


id: GO:1901014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of 3alpha(S)-strictosidine.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete 3alpha(S)-strictosidine catabolic process (obsolete GO:1901014)","synonyms":[{"name":"3alpha(S)-strictosidine breakdown","type":"exact"},{"name":"3alpha(S)-strictosidine catabolism","type":"exact"},{"name":"3alpha(S)-strictosidine degradation","type":"exact"}],"termid":"GO:1901014"}


id: PBO:0030229
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_steady-state_intracellular_calcium_level_following_extracellular_calcium_stimulus","termid":"PBO:0030229"}


id: MONDO:0010915
data:
  {"annotated_genes":["SJAG_03703","SJAG_02431"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86502,86503],"is_not":false,"summary":null,"term":"MONDO:0010915"}]},"cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the MYH14 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02431":null,"SJAG_03703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 4A","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0110573","UMLS:C1833503","GARD:18100","MEDGEN:322209","MESH:C563460","OMIM:600652"],"synonyms":[{"name":"DFNA4A","type":"narrow"},{"name":"MYH14 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"autosomal dominant deafness 4A","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 4A","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in MYH14","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 4A","type":"narrow"},{"name":"deafness, autosomal dominant 4","type":"narrow"},{"name":"deafness, autosomal dominant 4A","type":"narrow"},{"name":"deafness, autosomal dominant 4a","type":"narrow"},{"name":"deafness, autosomal dominant type 4A","type":"narrow"}],"termid":"MONDO:0010915","terms_by_termid":{"MONDO:0010915":null},"xrefs":{"Monarch":{"xref_id":"0010915"}}}


id: PBO:0060873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neural EGFL like 1","termid":"PBO:0060873"}


id: PR:Q9USW1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A basic salivary proline-rich protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C21B10.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21B10.03c","secondary_identifiers":["UniProtKB:Q9USW1"],"synonyms":[{"name":"Spom972h-PRB1","type":"exact"}],"termid":"PR:Q9USW1"}


id: GO:1990009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a retinal cell.","definition_xrefs":["GOC:mtg_apoptosis","PMID:24664675","PMID:15558487"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process","termid":"GO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal cell apoptotic process","secondary_identifiers":["GO:0046674"],"synonyms":[{"name":"induction of retinal programmed cell death","type":"related"}],"termid":"GO:1990009"}


id: FYPO:0001810
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of guanine into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal guanine import","termid":"FYPO:0001809"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased guanine import","synonyms":[{"name":"decreased guanine import across plasma membrane","type":"exact"},{"name":"decreased guanine import during mitotic cell cycle","type":"related"},{"name":"decreased guanine import during vegetative growth","type":"exact"},{"name":"decreased guanine import into cell","type":"exact"},{"name":"decreased guanine uptake","type":"exact"},{"name":"reduced guanine import","type":"exact"}],"termid":"FYPO:0001810"}


id: PR:O42995
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mis19 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein SPBC27B12.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC27B12.02","synonyms":[{"name":"Spom972h-mis19","type":"exact"}],"termid":"PR:O42995"}


id: FYPO:0004795
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the meiotic nuclear divisions are normal (i.e. indistinguishable from wild type) during a cycle of zygotic meiosis and sporulation. Zygotic meiosis and sporulation take place under conditions of continuous nitrogen starvation, in which haploid cells of the opposite mating types conjugate to form diploid zygotes that proceed immediately to undergo meiosis and sporulation.","definition_xrefs":["PMID:25891897","PomBase:mah","PMID:22558440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiosis","termid":"FYPO:0000478"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal zygotic meiosis","synonyms":[{"name":"normal meiosis during zygotic meiosis","type":"exact"},{"name":"normal zygotic meiotic nuclear division","type":"exact"}],"termid":"FYPO:0004795"}


id: PR:Q9Y7Q7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC297.05 gene.","definition_xrefs":["UniProtKB:Q9Y7Q7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENN domain-containing protein C297.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC297.05","synonyms":[{"name":"Spom972h-SPCC297.05","type":"exact"}],"termid":"PR:Q9Y7Q7"}


id: MONDO:0043472
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by abnormal secretion of adrenocorticotrophic hormone in conjunction with neoplastic growth occurring anywhere in the body. The most common associations are tumors of the bronchus (oat cell or carcinoid), thymic tumors (epithelial or carcinoid), and pancreatic endocrine tumor. (DeVita et al. Cancer, p 1364. 4th edition. Lippincott)","definition_xrefs":["NCIT:C4387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adrenal gland disorder","termid":"MONDO:0005495"},{"relation_name":"is_a","term_name":"neoplastic syndrome","termid":"MONDO:0021058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectopic ACTH secretion syndrome","secondary_identifiers":["MEDGEN:103","SCTID:626004","NANDO:2200351","MESH:D000182","UMLS:C0001231"],"synonyms":[{"name":"ACTH syndromes, ectopic","type":"related"},{"name":"ectopic ACTH secretion","type":"exact"},{"name":"ectopic ACTH secretion causing Cushing's syndrome","type":"related"},{"name":"ectopic ACTH secretion syndrome","type":"exact"},{"name":"ectopic ACTH syndrome","type":"exact"},{"name":"ectopic ACTH syndromes","type":"related"},{"name":"hypercortisolism due to nonpituitary tumor","type":"exact"},{"name":"hypercortisolism due to nonpituitary tumour","type":"exact"},{"name":"syndrome, ectopic ACTH","type":"related"},{"name":"syndromes, ectopic ACTH","type":"related"}],"termid":"MONDO:0043472","xrefs":{"Monarch":{"xref_id":"0043472"}}}


id: PBO:0028723
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_actomyosin_contractile_ring","termid":"PBO:0028723"}


id: PBO:0058563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6505","termid":"PBO:0058563"}


id: PR:O74473
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cdc11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74473"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septation initiation network scaffold protein cdc11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.11c","synonyms":[{"name":"SIN scaffold protein cdc11 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cdc11","type":"exact"},{"name":"cell division control protein 11 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74473"}


id: GO:0090718
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An adaptive immune response that involves one or more immune effector processes and takes place during the effector phase of the adaptive immune response.","definition_xrefs":["ISBN:1405196831","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adaptive immune response","termid":"GO:0002250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adaptive immune effector response","termid":"GO:0090718"}


id: GO:0060979
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The differentiation of endothelial cells from progenitor cells that contributes to blood vessel development in the heart, and the de novo formation of blood vessels and tubes.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vasculogenesis","termid":"GO:0001570"},{"relation_name":"part_of","term_name":"coronary vasculature morphogenesis","termid":"GO:0060977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vasculogenesis involved in coronary vascular morphogenesis","synonyms":[{"name":"coronary vasculogenesis","type":"exact"},{"name":"vasculogenesis involved in coronary blood vessel morphogenesis","type":"exact"}],"termid":"GO:0060979"}


id: PBO:0030014
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_caspofungin","termid":"PBO:0030014"}


id: PR:P49777
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tigger transposable element-derived protein 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03736","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARS-binding protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1105.04c","secondary_identifiers":["UniProtKB:P49777"],"synonyms":[{"name":"Spom972h-TIGD4","type":"exact"}],"termid":"PR:P49777"}


id: PBO:0116627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF GTPase 4","termid":"PBO:0116627"}


id: MONDO:0060550
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"postaxial polydactyly type A","termid":"MONDO:0019673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly, postaxial, type a7","secondary_identifiers":["UMLS:C4539976","MEDGEN:1627079","OMIM:617642"],"synonyms":[{"name":"PAPA7","type":"related"},{"name":"polydactyly, postaxial, type A7","type":"related"}],"termid":"MONDO:0060550","xrefs":{"Monarch":{"xref_id":"0060550"}}}


id: GO:0033769
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: 2-dimethylallyl-(6aS,11aS)-3,6a,9-trihydroxypterocarpan + NADPH + H+ + O2 = glyceollin II or glyceollin III + NADP+ + 2 H2O, and 4-dimethylallyl-(6aS,11aS)-3,6a,9-trihydroxypterocarpan + NADPH + H+ + O2 = glyceollin I + NADP+ + 2 H2O.","definition_xrefs":["EC:1.14.14.135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"glyceollin synthase activity","synonyms":[{"name":"dimethylallyl-3,6a,9-trihydroxypterocarpan cyclase activity","type":"exact"}],"termid":"GO:0033769"}


id: GO:0003241
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Developmental growth that contributes to the shaping of the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"},{"relation_name":"part_of","term_name":"heart morphogenesis","termid":"GO:0003007"},{"relation_name":"part_of","term_name":"heart growth","termid":"GO:0060419"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"growth involved in heart morphogenesis","termid":"GO:0003241"}


id: MONDO:0010155
data:
  {"annotated_genes":["SJAG_04323"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84764],"is_not":false,"summary":null,"term":"MONDO:0010155"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete autosomal ichthyosis syndrome (obsolete MONDO:0017270)","termid":"MONDO:0017270"},{"relation_name":"is_a","term_name":"neutral lipid storage disease","termid":"MONDO:0015611"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04323":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525","MONDO:0002561"],"is_obsolete":false,"name":"Dorfman-Chanarin disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0268238","MEDGEN:82780","NANDO:1200622","NANDO:2200997","OMIM:275630","SCTID:19604005","NANDO:1200623","Orphanet:98907","GARD:3979","icd11.foundation:690728790","NORD:1283"],"synonyms":[{"name":"CDS","type":"related"},{"name":"Chanarin-Dorfman Syndrome","type":"exact"},{"name":"Chanarin-Dorfman disease","type":"related"},{"name":"Chanarin-Dorfman syndrome","type":"exact"},{"name":"DCs","type":"related"},{"name":"Dorfman Chanarin syndrome","type":"related"},{"name":"Dorfman-Chanarin syndrome","type":"related"},{"name":"NLSDI","type":"exact"},{"name":"disorder of cornification 12 (neutral lipid storage type)","type":"related"},{"name":"ichthyosiform erythroderma with leukocyte vacuolation","type":"related"},{"name":"ichthyotic neutral Lipid storage disease","type":"related"},{"name":"neutral Lipid storage disease with ichthyosis","type":"related"},{"name":"neutral lipid storage disease with ichthyosis","type":"exact"},{"name":"neutral lipid storage disease with ichthyotic","type":"related"},{"name":"triglyceride storage disease with impaired long-chain fatty acid oxidation","type":"related"}],"termid":"MONDO:0010155","terms_by_termid":{"MONDO:0010155":null},"xrefs":{"Monarch":{"xref_id":"0010155"}}}


id: PBO:0043012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHKA divergent transcript","termid":"PBO:0043012"}


id: GO:0034901
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: endosulfan hydroxyether = endosulfan lactone + 2 H+ + 2 e-.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete endosulfan hydroxyether dehydrogenase activity (obsolete GO:0034901)","termid":"GO:0034901"}


id: GO:0003339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the metanephros.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000696"},{"relation_name":"regulates","term_name":"mesenchymal to epithelial transition involved in metanephros morphogenesis","termid":"GO:0003337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis","termid":"GO:0003339"}


id: MONDO:0021096
data:
  {"annotated_genes":["SJAG_01144"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85914],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0003789"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial neoplasm","termid":"MONDO:0005626"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01144":null},"genotype_count":0,"is_obsolete":false,"name":"papillary epithelial neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:235456","UMLS:C1335324","NCIT:C8429"],"synonyms":[{"name":"papillary epithelial neoplasm","type":"exact"}],"termid":"MONDO:0021096","terms_by_termid":{"MONDO:0003789":null},"xrefs":{"Monarch":{"xref_id":"0021096"}}}


id: PBO:0070494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 29","termid":"PBO:0070494"}


id: GO:0070278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretion by cell","termid":"GO:0032940"},{"relation_name":"part_of","term_name":"extracellular matrix organization","termid":"GO:0030198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"extracellular matrix constituent secretion","synonyms":[{"name":"ECM constituent secretion","type":"exact"},{"name":"ECM secretion","type":"exact"}],"termid":"GO:0070278"}


id: PBO:0026643
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_kinetochore_during_mitotic_spindle_assembly_checkpoint_signaling","termid":"PBO:0026643"}


id: PBO:0085754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase; stabilizes several plasma membrane amino acid transporters by antagonizing their ubiquitin-mediated degradation; phosphorylates Aly2p; negatively regulates Ldb19p-mediated endocytosis by phosphorylating Ldb19p; positively regulates activity of the three Mep ammonium transport proteins; mediates inhibitory phosphorylation of Mep2p and Par32p; TOR complex negatively regulates Npr1p activity; NPR1 has a paralog, PRR2, that arose from the whole genome duplication","termid":"PBO:0085754"}


id: MONDO:0010103
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"teeth, fused","secondary_identifiers":["UMLS:C0016873","MESH:D005671","MEDGEN:4808","OMIM:273000","SCTID:1744008"],"synonyms":[{"name":"teeth, fused","type":"exact"}],"termid":"MONDO:0010103","xrefs":{"Monarch":{"xref_id":"0010103"}}}


id: PBO:0052266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 4A","termid":"PBO:0052266"}


id: GO:0021554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the optic nerve over time, from its formation to the mature structure. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dgh","GOC:jid","ISBN:0838580343","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve development","termid":"GO:0021545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"optic nerve development","synonyms":[{"name":"CN II development","type":"related"},{"name":"cranial nerve 2 development","type":"exact"},{"name":"cranial nerve II development","type":"exact"}],"termid":"GO:0021554"}


id: MONDO:0005854
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mixed connective tissue disease (MCTD) is a rare autoimmune disorder that is characterized by features commonly seen in three different connective tissue disorders: systemic lupus erythematosus, scleroderma, and polymyositis. Some affected people may also have symptoms of rheumatoid arthritis. Although MCTD can affect people of all ages, it appears to be most common in women under age 30. Signs and symptoms vary but may include Raynaud's phenomenon ; arthritis; heart, lung and skin abnormalities; kidney disease; muscle weakness, and dysfunction of the esophagus. The cause of MCTD is currently unknown. There is no cure but certain medications such as nonsteroidal anti-inflammatory drugs (NSAIDs), corticosteroids and immunosuppresivedrugsmay help manage the symptoms.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"skeletal system disorder","termid":"MONDO:0005172"},{"relation_name":"excluded_subClassOf","term_name":"obsolete secondary glomerular disease (obsolete MONDO:0019724)","termid":"MONDO:0019724"},{"relation_name":"is_a","term_name":"rheumatic disorder","termid":"MONDO:0005554"},{"relation_name":"is_a","term_name":"overlapping connective tissue disease","termid":"MONDO:0016663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"mixed connective tissue disease","secondary_identifiers":["Orphanet:809","DOID:3492","NCIT:C84892","MedDRA:10027754","NORD:1451","SCTID:398049005","NANDO:2200430","icd11.foundation:891652224","EFO:0007374","GARD:7051","MEDGEN:10069","MESH:D008947","NANDO:1200278","UMLS:C0026272"],"synonyms":[{"name":"MCTD","type":"exact"},{"name":"connective tissue disease overlap syndrome","type":"exact"},{"name":"mixed collagen vascular disease","type":"exact"},{"name":"sharp syndrome","type":"exact"}],"termid":"MONDO:0005854","xrefs":{"Monarch":{"xref_id":"0005854"}}}


id: MONDO:0006066
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A variant of acinar prostate adenocarcinoma characterized by the presence of malignant cells with abundant xanthomatous appearing cytoplasm.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostatic acinar adenocarcinoma","termid":"MONDO:0002493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"acinar prostate adenocarcinoma, foamy gland variant","secondary_identifiers":["NCIT:C39882","EFO:1000064","UMLS:C5787290","MEDGEN:1835068"],"termid":"MONDO:0006066","xrefs":{"Monarch":{"xref_id":"0006066"}}}


id: PBO:0075683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"steroid receptor RNA activator 1","termid":"PBO:0075683"}


id: GO:0043991
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H2B by the addition of an phosphate group to a serine residue at position 14 of the histone.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2B-S14 phosphorylation (obsolete GO:0043991)","synonyms":[{"name":"histone H2B phosphorylation at S14","type":"exact"},{"name":"histone H2BS14 phosphorylation","type":"exact"}],"termid":"GO:0043991"}


id: PBO:0062941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolyl 4-hydroxylase, transmembrane","termid":"PBO:0062941"}


id: PBO:0043897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich protein 1 pseudogene 4","termid":"PBO:0043897"}


id: PBO:0065021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 3","termid":"PBO:0065021"}


id: PBO:0005254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M phase inhibitor protein kinase Wee1","termid":"PBO:0005254"}


id: GO:0060802
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from an epiblast cell to an extraembryonic ectoderm cell.","definition_xrefs":["PMID:14511481","GOC:dph","GOC:tb","PMID:31391456"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"epiblast cell-extraembryonic ectoderm cell signaling","termid":"GO:0060802"}


id: PBO:0067366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 466, pseudogene","termid":"PBO:0067366"}


id: MONDO:0000490
data:
  {"annotated_genes":["SJAG_04621","SJAG_04001","SJAG_00118","SJAG_01143"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011303"},{"annotations":[85693],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013589"},{"annotations":[86627,86628],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014462"}]},"cv_name":"mondo","definition":"A hardening of the kidney glomerulus caused by scarring of the blood vessels.","definition_xrefs":["NCIT:C120888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular disorder","termid":"MONDO:0019722"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00118":null,"SJAG_01143":null,"SJAG_04001":null,"SJAG_04621":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"glomerulosclerosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:197661001","icd11.foundation:2068645853","DOID:0050851","MEDGEN:61248","UMLS:C0178664"],"synonyms":[{"name":"glomerular sclerosis","type":"exact"}],"termid":"MONDO:0000490","terms_by_termid":{"MONDO:0011303":null,"MONDO:0013589":null,"MONDO:0014462":null},"xrefs":{"Monarch":{"xref_id":"0000490"}}}


id: GO:0106214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of vesicle fusion with Golgi apparatus.","definition_xrefs":["PMID:26195667","GOC:se"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vesicle fusion","termid":"GO:0031338"},{"relation_name":"is_a","term_name":"regulation of Golgi organization","termid":"GO:1903358"},{"relation_name":"regulates","term_name":"vesicle fusion with Golgi apparatus","termid":"GO:0048280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810","GO:0061024"],"is_obsolete":false,"name":"regulation of vesicle fusion with Golgi apparatus","termid":"GO:0106214"}


id: PBO:0011505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anthranilate synthase component II, multifunctional enzyme (predicted)","termid":"PBO:0011505"}


id: GO:0032105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of a response to an extracellular stimulus.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of response to extracellular stimulus (obsolete GO:0032105)","synonyms":[{"name":"down regulation of response to extracellular stimulus","type":"exact"},{"name":"down-regulation of response to extracellular stimulus","type":"exact"},{"name":"downregulation of response to extracellular stimulus","type":"exact"},{"name":"inhibition of response to extracellular stimulus","type":"narrow"}],"termid":"GO:0032105"}


id: PBO:0051383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda locus","termid":"PBO:0051383"}


id: MOD:00493
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with a formyl group.","definition_xrefs":["PubMed:15799070","DeltaMass:0","Unimod:122"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylated residue","termid":"MOD:00649"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formylated residue","synonyms":[{"name":"FoRes","type":"exact"},{"name":"Formyl","type":"related"},{"name":"Formylation","type":"related"},{"name":"Formylation (CHO)","type":"exact"}],"termid":"MOD:00493"}


id: GO:2000969
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of AMPA selective glutamate receptor activity.","definition_xrefs":["PMID:21423165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ion transmembrane transporter activity","termid":"GO:0032414"},{"relation_name":"is_a","term_name":"positive regulation of signaling receptor activity","termid":"GO:2000273"},{"relation_name":"is_a","term_name":"regulation of AMPA receptor activity","termid":"GO:2000311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0023052"],"is_obsolete":false,"name":"positive regulation of AMPA receptor activity","synonyms":[{"name":"positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity","type":"broad"}],"termid":"GO:2000969"}


id: GO:0046075
data:
  {"annotated_genes":["SJAG_04657","SJAG_04627","SJAG_04665"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68119,92197,70518],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving dTTP, deoxyribosylthymine triphosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside triphosphate metabolic process","termid":"GO:0009211"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide metabolic process","termid":"GO:0009219"}],"gene_count":3,"genes_by_uniquename":{"SJAG_04627":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"dTTP metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"dTTP metabolism","type":"exact"}],"termid":"GO:0046075","terms_by_termid":{"GO:0006235":null}}


id: PBO:0001368
data:
  {"annotation_feature_type":"gene","cv_name":"DNA_binding_specificity","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complex binds 5'-CCAAT-3'","termid":"PBO:0001368"}


id: PBO:0070063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 20, pseudogene","termid":"PBO:0070063"}


id: PBO:0085634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in histone H2B ubiquitination; acts as cofactor for Bre1p; null mutant forms abnormally large cells, and homozygous diploid null mutant displays delayed premeiotic DNA synthesis and reduced efficiency of meiotic nuclear division","termid":"PBO:0085634"}


id: PBO:0083194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified gene GAS1/YMR307W","termid":"PBO:0083194"}


id: PBO:0001580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S14 (predicted)","termid":"PBO:0001580"}


id: GO:1990080
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the biogenic amine 2-phenylethylamine to initiate a change in cell activity.","definition_xrefs":["PMID:16878137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled amine receptor activity","termid":"GO:0008227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"2-phenylethylamine receptor activity","synonyms":[{"name":"beta-phenylethylamine receptor activity","type":"exact"}],"termid":"GO:1990080"}


id: MONDO:0010814
data:
  {"annotated_genes":["SJAG_04337"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85965],"is_not":false,"summary":null,"term":"MONDO:0010814"}]},"cv_name":"mondo","definition":"Chondrodysplasia - disorder of sex development is an extremely rare disorder of sex development, reported in only two siblings (one terminated in pregnancy) to date, characterized by the clinical features of 46,XY complete gonadal dysgenesis (normal external female genitalia, lack of pubertal development, primary amenorrhea, and hypergonadotrophic hypogonadism) in association with severe dwarfism with generalized chondrodysplasia (bell-shaped thorax, micromelia, brachydactyly). Other reported features in the live sibling included eye anomalies (hypoplastic irides, myopia, coloboma of optic disks), dysmorphic features (deep-set eyes, upslanting palpebral fissures, puffy eyelids, large ears and mouth, mild prognathism), muscular hypoplasia, mild intellectual deficiency and severe microcephaly with cerebellar vermis hypoplasia. An autosomal recessive inheritance has been suggested.","definition_xrefs":["Orphanet:1422"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with micromelia (obsolete MONDO:0018232)","termid":"MONDO:0018232"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"46,XY disorder of sex development","termid":"MONDO:0020040"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04337":null},"genotype_count":0,"is_obsolete":false,"name":"chondrodysplasia-pseudohermaphroditism syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:720851007","DOID:0060644","MEDGEN:333149","OMIM:600092","UMLS:C1838654","GARD:16565","MESH:C536123"],"synonyms":[{"name":"Nivelon-Nivelon-Mabille syndrome","type":"exact"},{"name":"chondrodysplasia-disorder of sex development syndrome","type":"exact"},{"name":"chondrodysplasia-pseudohermaphroditism syndrome","type":"exact"}],"termid":"MONDO:0010814","terms_by_termid":{"MONDO:0010814":null},"xrefs":{"Monarch":{"xref_id":"0010814"}}}


id: PBO:0054671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2077","termid":"PBO:0054671"}


id: PBO:0044048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSRP1 antisense RNA 1","termid":"PBO:0044048"}


id: GO:0120324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphological, biochemical and genetic changes that induce the differentiation of bloodstream form trypomastigotes into procyclic trypomastigotes in some of the Trypanosomatidae species such as Trypanosoma brucei. This process occurs inside the midgut of the tsetse fly vectors in T. brucei.","definition_xrefs":["PMID:3194362","PMID:1698624","GOC:ach","PMID:10593184","PMID:17997129","PMID:3194363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"development of symbiont in host","termid":"GO:0044114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"procyclogenesis","termid":"GO:0120324"}


id: PBO:0068922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 165, pseudogene","termid":"PBO:0068922"}


id: GO:0001050
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a single subunit RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6.","definition_xrefs":["PMID:20701995","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase binding","termid":"GO:0070063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"single-subunit type RNA polymerase binding","synonyms":[{"name":"SP6-type RNA polymerase binding","type":"exact"},{"name":"T3-type RNA polymerase binding","type":"exact"},{"name":"T3/T7 type RNA polymerase binding","type":"exact"},{"name":"T7-type RNA polymerase binding","type":"exact"}],"termid":"GO:0001050"}


id: PR:O74422
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A charged multivesicular body protein 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04731","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C162.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC162.06c","secondary_identifiers":["UniProtKB:O74422"],"synonyms":[{"name":"Spom972h-CHMP5","type":"exact"}],"termid":"PR:O74422"}


id: GO:0099151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of postsynaptic density assembly, the aggregation, arrangement and bonding together of a set of components to form a postsynaptic density.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of postsynaptic specialization assembly","termid":"GO:0099150"},{"relation_name":"is_a","term_name":"regulation of excitatory synapse assembly","termid":"GO:1904889"},{"relation_name":"is_a","term_name":"regulation of postsynaptic density organization","termid":"GO:1905874"},{"relation_name":"regulates","term_name":"postsynaptic density assembly","termid":"GO:0097107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of postsynaptic density assembly","termid":"GO:0099151"}


id: PBO:0069497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 764, pseudogene","termid":"PBO:0069497"}


id: GO:0098926
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Signal transduction in which the initial step occurs in a postsynapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"},{"relation_name":"part_of","term_name":"synaptic signaling","termid":"GO:0099536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"postsynaptic signal transduction","synonyms":[{"name":"postsynaptic signaling pathway","type":"exact"}],"termid":"GO:0098926"}


id: MOD:00033
data:
  {"annotated_genes":["SJAG_04067","SJAG_00784","SJAG_02504","SJAG_02260","SJAG_01626","SJAG_02435","SJAG_02388","SJAG_04953","SJAG_02827","SJAG_04238","SJAG_02694","SJAG_04125","SJAG_00096","SJAG_00109","SJAG_04553","SJAG_02489","SJAG_03032","SJAG_03290","SJAG_01029","SJAG_01970","SJAG_04789","SJAG_01162","SJAG_00288","SJAG_00254"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[80317,80293,80318,80258,80341,80335,80432,80302,80281,80280,80207,80354,80329,80292,80343,80319,80342,80209,80279,80195,80466,80294,80214,80321,80439,80462,80196,80322,80235,80336,80360,80410,80393,80506,80507,80463,80464,80350,80328,80330,80331,80405,80197,80194,80208],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00689"}]},"cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two or more amino acid residues with covalent bonds.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by chemical process","termid":"MOD:01156"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00096":null,"SJAG_00109":null,"SJAG_00254":null,"SJAG_00288":null,"SJAG_00784":null,"SJAG_01029":null,"SJAG_01162":null,"SJAG_01626":null,"SJAG_01970":null,"SJAG_02260":null,"SJAG_02388":null,"SJAG_02435":null,"SJAG_02489":null,"SJAG_02504":null,"SJAG_02694":null,"SJAG_02827":null,"SJAG_03032":null,"SJAG_03290":null,"SJAG_04067":null,"SJAG_04125":null,"SJAG_04238":null,"SJAG_04553":null,"SJAG_04789":null,"SJAG_04953":null},"genotype_count":0,"is_obsolete":false,"name":"crosslinked residues","references_by_uniquename":{"PMID:36408920":null},"synonyms":[{"name":"XLNK-Res-Res","type":"exact"}],"termid":"MOD:00033","terms_by_termid":{"MOD:00689":null}}


id: GO:1905931
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of vascular smooth muscle cell differentiation involved in phenotypic switching.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:BHF_miRNA","PMID:25089138","GOC:rph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of vascular associated smooth muscle cell differentiation","termid":"GO:1905064"},{"relation_name":"is_a","term_name":"negative regulation of cell differentiation involved in phenotypic switching","termid":"GO:1905916"},{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching","termid":"GO:1905930"},{"relation_name":"negatively_regulates","term_name":"vascular associated smooth muscle cell differentiation involved in phenotypic switching","termid":"GO:1905420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching","synonyms":[{"name":"down regulation of VSMC differentiation involved in phenotypic dimorphism","type":"related"},{"name":"down regulation of VSMC differentiation involved in phenotypic switching","type":"exact"},{"name":"down regulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism","type":"related"},{"name":"down regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching","type":"exact"},{"name":"down regulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism","type":"related"},{"name":"down regulation of vascular smooth muscle cell differentiation involved in phenotypic switching","type":"exact"},{"name":"down-regulation of VSMC differentiation involved in phenotypic dimorphism","type":"related"},{"name":"down-regulation of VSMC differentiation involved in phenotypic switching","type":"exact"},{"name":"down-regulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism","type":"related"},{"name":"down-regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching","type":"exact"},{"name":"down-regulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism","type":"related"},{"name":"down-regulation of vascular smooth muscle cell differentiation involved in phenotypic switching","type":"exact"},{"name":"downregulation of VSMC differentiation involved in phenotypic dimorphism","type":"related"},{"name":"downregulation of VSMC differentiation involved in phenotypic switching","type":"exact"},{"name":"downregulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism","type":"related"},{"name":"downregulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching","type":"exact"},{"name":"downregulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism","type":"related"},{"name":"downregulation of vascular smooth muscle cell differentiation involved in phenotypic switching","type":"exact"},{"name":"inhibition of VSMC differentiation involved in phenotypic dimorphism","type":"related"},{"name":"inhibition of VSMC differentiation involved in phenotypic switching","type":"narrow"},{"name":"inhibition of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism","type":"related"},{"name":"inhibition of vascular associated smooth muscle cell differentiation involved in phenotypic switching","type":"narrow"},{"name":"inhibition of vascular smooth muscle cell differentiation involved in phenotypic dimorphism","type":"related"},{"name":"inhibition of vascular smooth muscle cell differentiation involved in phenotypic switching","type":"narrow"},{"name":"negative regulation of VSMC differentiation involved in phenotypic dimorphism","type":"related"},{"name":"negative regulation of VSMC differentiation involved in phenotypic switching","type":"exact"},{"name":"negative regulation of vascular associated smooth muscle cell differentiation involved in phenotypic dimorphism","type":"related"},{"name":"negative regulation of vascular smooth muscle cell differentiation involved in phenotypic dimorphism","type":"related"},{"name":"negative regulation of vascular smooth muscle cell differentiation involved in phenotypic switching","type":"exact"}],"termid":"GO:1905931"}


id: PBO:0058353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4726","termid":"PBO:0058353"}


id: MONDO:0015910
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare constitutional hemolytic anemia (obsolete MONDO:0015910)","secondary_identifiers":["Orphanet:182043"],"synonyms":[{"name":"rare familial constitutional hemolytic anemia","type":"related"},{"name":"rare genetic constitutional hemolytic anemia","type":"related"}],"termid":"MONDO:0015910","xrefs":{"Monarch":{"xref_id":"0015910"}}}


id: FYPO:0000466
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype in which the occurrence of invasive growth is decreased.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased invasive growth (obsolete FYPO:0000466)","synonyms":[{"name":"invasive growth: decreased","type":"related"},{"name":"reduced invasive growth","type":"exact"}],"termid":"FYPO:0000466"}


id: MONDO:0019959
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Glucagonoma is a rare, functioning type of pancreatic neuroendocrine tumor (PNET) that hypersecretes glucagon, leading to a syndrome comprised of necrolytic migratory erythema, diabetes mellitus, anemia, weight loss, mucosal abnormalities, thromboembolism, gastrointestinal and neuropsychiatric symptoms.","definition_xrefs":["Orphanet:97280"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pancreatic neuroendocrine tumor","termid":"MONDO:0019954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"glucagonoma","secondary_identifiers":["GARD:2496","MESH:D005935","NANDO:2100142","SCTID:16424000","icd11.foundation:1918063179","MedDRA:10018404","MEDGEN:4908","UMLS:C0017689","NANDO:2200397","NCIT:C95597"],"synonyms":[{"name":"glucagonoma","type":"exact"},{"name":"glucagonoma syndrome","type":"exact"},{"name":"pancreatic glucagonoma","type":"exact"}],"termid":"MONDO:0019959","xrefs":{"Monarch":{"xref_id":"0019959"}}}


id: GO:2000673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of motor neuron apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neuron apoptotic process","termid":"GO:0043525"},{"relation_name":"is_a","term_name":"regulation of motor neuron apoptotic process","termid":"GO:2000671"},{"relation_name":"positively_regulates","term_name":"motor neuron apoptotic process","termid":"GO:0097049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of motor neuron apoptotic process","synonyms":[{"name":"positive regulation of motoneuron apoptosis","type":"exact"},{"name":"positive regulation of motor neuron apoptosis","type":"narrow"}],"termid":"GO:2000673"}


id: PBO:0058938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MISP family member 3","termid":"PBO:0058938"}


id: PBO:0059917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 3","termid":"PBO:0059917"}


id: PBO:0087409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Substrate-specific adaptor protein involved in apo-Rli1p maturation; subunit of the Yae1-Lto1 complex, recruiting apo-Rli1p to the CIA targeting complex, facilitating the insertion of an Fe/S cluster by the Fe-S biosynthetic machinery; deca-GX3 motif crucial for complex formation; essential for aerobic but not anaerobic growth; homolog of human YAE1D1, which is overexpressed in oral cancers; co-expression of YAE1D1 and LTO1 homolog ORAOV1 restores growth and Rli1p maturation after YAE1 depletion","termid":"PBO:0087409"}


id: PBO:0045422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"divergent-paired related homeobox pseudogene 2","termid":"PBO:0045422"}


id: PBO:0073792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 5 member 12","termid":"PBO:0073792"}


id: MOD:00111
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-farnesyl-L-cysteine.","definition_xrefs":["PubMed:1872463","OMSSA:42","DeltaMass:293","PubMed:15609361","RESID:AA0102","PubMed:1409665","PubMed:2684976","Unimod:44#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"farnesylated residue","termid":"MOD:00437"},{"relation_name":"is_a","term_name":"isoprenylated cysteine","termid":"MOD:01110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"},{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:01155","MOD:00905"],"is_obsolete":false,"name":"S-farnesyl-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid","type":"exact"},{"name":"2-amino-3-(3,7,11-trimethyl-2,6,10-dodecatrienylthio)propanoic acid","type":"exact"},{"name":"Farnesyl","type":"related"},{"name":"Farnesylation","type":"related"},{"name":"LIPID S-farnesyl cysteine","type":"exact"},{"name":"S-farnesyl Cystenyl","type":"exact"},{"name":"S-farnesyl-L-cysteine","type":"exact"},{"name":"SFarnCys","type":"exact"},{"name":"farnesylationc","type":"exact"}],"termid":"MOD:00111"}


id: MONDO:0011557
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"radiation sensitivity/chromosome instability syndrome, autosomal dominant","secondary_identifiers":["OMIM:605463","UMLS:C1854244","MEDGEN:343082","MESH:C565326"],"synonyms":[{"name":"radiation sensitivity/chromosome instability syndrome, autosomal dominant","type":"exact"}],"termid":"MONDO:0011557","xrefs":{"Monarch":{"xref_id":"0011557"}}}


id: PBO:0042713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell migration inducing hyaluronidase 1","termid":"PBO:0042713"}


id: PBO:0083725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential 113 kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis prior to SNARE-mediated fusion; interacts with and functions as a downstream effector of active, GTP-bound Sec4p, a Rab family GTPase","termid":"PBO:0083725"}


id: PBO:0082138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Activator of anaphase-promoting complex/cyclosome (APC/C); antagonist of the spindle assembly checkpoint; directs ubiquitination of cyclins resulting in mitotic exit; targets the APC/C to specific substrates including: Cdc20p, Ase1p, Cin8p, Fin1p and Clb5p; partially active in metaphase, and fully active in anaphase; cell-cycle regulated","termid":"PBO:0082138"}


id: GO:0090171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structures of a chondrocyte are generated and organized. This process occurs while the initially relatively unspecialized cell is acquiring the specialized features of a chondrocyte.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"part_of","term_name":"chondrocyte development","termid":"GO:0002063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chondrocyte morphogenesis","termid":"GO:0090171"}


id: GO:0033902
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of the phosphodiester linkage between guanosine and adenosine residues at one specific position in 28S rRNA from rat ribosomes.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA nuclease activity","termid":"GO:0004540"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0140098","GO:0016788"],"is_obsolete":false,"name":"rRNA endonuclease activity","secondary_identifiers":["EC:4.6.1.23","MetaCyc:3.1.27.10-RXN"],"synonyms":[{"name":"alpha-sarcin","type":"related"}],"termid":"GO:0033902"}


id: PBO:0064957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 9","termid":"PBO:0064957"}


id: MONDO:0022872
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corpus callosum dysgenesis X-linked recessive","termid":"MONDO:0022872","xrefs":{"Monarch":{"xref_id":"0022872"}}}


id: MONDO:0044079
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder of the heart and kidneys in which dysfunction of one of the organs induces dysfunction of the other organ.","definition_xrefs":["NCIT:C123225"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"heart failure","termid":"MONDO:0005252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cardio-renal syndrome","secondary_identifiers":["MESH:D059347","UMLS:C2242703","MEDGEN:453248","SCTID:445236007"],"synonyms":[{"name":"Reno Cardiac syndrome","type":"related"},{"name":"Reno-Cardiac syndrome","type":"related"},{"name":"Reno-Cardiac syndromes","type":"related"},{"name":"Renocardiac syndrome","type":"related"},{"name":"Renocardiac syndromes","type":"related"},{"name":"cardio renal syndrome","type":"related"},{"name":"cardio-renal syndromes","type":"related"},{"name":"cardiorenal syndrome","type":"exact"},{"name":"cardiorenal syndromes","type":"related"},{"name":"syndrome, Reno-Cardiac","type":"related"},{"name":"syndrome, Renocardiac","type":"related"},{"name":"syndrome, cardio-renal","type":"related"},{"name":"syndrome, cardiorenal","type":"related"},{"name":"syndromes, Reno-Cardiac","type":"related"},{"name":"syndromes, Renocardiac","type":"related"},{"name":"syndromes, cardio-renal","type":"related"},{"name":"syndromes, cardiorenal","type":"related"}],"termid":"MONDO:0044079","xrefs":{"Monarch":{"xref_id":"0044079"}}}


id: GO:1904347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of small intestine smooth muscle contraction.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:11991626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gastro-intestinal system smooth muscle contraction","termid":"GO:1904304"},{"relation_name":"regulates","term_name":"small intestine smooth muscle contraction","termid":"GO:1990770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of small intestine smooth muscle contraction","termid":"GO:1904347"}


id: PBO:0078142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 21","termid":"PBO:0078142"}


id: GO:1900048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hemostasis.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"is_a","term_name":"regulation of hemostasis","termid":"GO:1900046"},{"relation_name":"positively_regulates","term_name":"hemostasis","termid":"GO:0007599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hemostasis","synonyms":[{"name":"activation of hemostasis","type":"narrow"},{"name":"up regulation of hemostasis","type":"exact"},{"name":"up-regulation of hemostasis","type":"exact"},{"name":"upregulation of hemostasis","type":"exact"}],"termid":"GO:1900048"}


id: FYPO:0004750
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is elongated and has one or more septa.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"elongated vegetative cell","termid":"FYPO:0001122"},{"relation_name":"has_part","term_name":"septated vegetative cell","termid":"FYPO:0002342"},{"relation_name":"is_a","term_name":"elongated vegetative cell","termid":"FYPO:0001122"},{"relation_name":"is_a","term_name":"septated vegetative cell","termid":"FYPO:0002342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"elongated septated vegetative cell","synonyms":[{"name":"elongated septated cell during mitotic cell cycle","type":"related"},{"name":"elongated septated cells during vegetative growth","type":"exact"},{"name":"long septated cells","type":"exact"}],"termid":"FYPO:0004750"}


id: GO:0008123
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cholesterol + O2 + reduced [NADPH--hemoprotein reductase] = 7alpha-hydroxycholesterol + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:21812"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid 7-alpha-hydroxylase activity","termid":"GO:0008387"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"cholesterol 7-alpha-monooxygenase activity","secondary_identifiers":["MetaCyc:CHOLESTEROL-7-ALPHA-MONOOXYGENASE-RXN","EC:1.14.14.23","Reactome:R-HSA-192051"],"synonyms":[{"name":"cholesterol 7-alpha-hydroxylase activity","type":"exact"},{"name":"cholesterol 7alpha-hydroxylase activity","type":"related"},{"name":"cholesterol 7alpha-monooxygenase activity","type":"related"},{"name":"cholesterol,NADPH:oxygen oxidoreductase (7alpha-hydroxylating)","type":"related"},{"name":"cytochrome P450 CYP7A1","type":"narrow"}],"termid":"GO:0008123"}


id: PBO:0063941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PIN1 divergent transcript","termid":"PBO:0063941"}


id: MONDO:0006758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mycobacterium infections of the female reproductive tract (genitalia, female).","definition_xrefs":["MESH:D014384"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"female genital tuberculosis","secondary_identifiers":["MedDRA:10061150","EFO:1000935","MEDGEN:21724","SCTID:74181004","UMLS:C0041311"],"termid":"MONDO:0006758","xrefs":{"Monarch":{"xref_id":"0006758"}}}


id: GO:0044242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular lipid catabolic process (obsolete GO:0044242)","synonyms":[{"name":"cellular lipid breakdown","type":"exact"},{"name":"cellular lipid catabolism","type":"exact"},{"name":"cellular lipid degradation","type":"exact"}],"termid":"GO:0044242"}


id: GO:2000771
data:
  {"annotated_genes":["SJAG_00661","SJAG_01799","SJAG_00845","SJAG_02536","SJAG_04522","SJAG_04461"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116393,107413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000784"},{"annotations":[105155,99963,93500],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000247"},{"annotations":[103489],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061361"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of establishment or maintenance of cell polarity regulating cell shape.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of cell polarity regulating cell shape","termid":"GO:2000769"},{"relation_name":"positively_regulates","term_name":"establishment or maintenance of cell polarity regulating cell shape","termid":"GO:0071963"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00661":null,"SJAG_00845":null,"SJAG_01799":null,"SJAG_02536":null,"SJAG_04461":null,"SJAG_04522":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"positive regulation of establishment or maintenance of cell polarity regulating cell shape","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:2000771","terms_by_termid":{"GO:0061361":null,"GO:2000247":null,"GO:2000784":null}}


id: PBO:0113289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Positive regulator of the Gcn2p kinase activity; important for disaggregation of ordered and disordered protein aggregates; forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA; suppresses frameshifting at stalled ribosomes","termid":"PBO:0113289"}


id: PBO:0087008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribokinase, phosphorylates ribose to ribose-5-phosphate; required for recycling ribose during nucleotide metabolism","termid":"PBO:0087008"}


id: PBO:0038449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alanyl-tRNA synthetase 1 pseudogene 1","termid":"PBO:0038449"}


id: PBO:0083939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma-adaptin; large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in vesicle mediated transport","termid":"PBO:0083939"}


id: MONDO:0004519
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare hemangioma arising from synovium lining surfaces.","definition_xrefs":["NCIT:C6525"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"deep hemangioma","termid":"MONDO:0003096"},{"relation_name":"is_a","term_name":"hemangioma","termid":"MONDO:0006500"},{"relation_name":"is_a","term_name":"benign synovial neoplasm","termid":"MONDO:0024715"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synovial angioma","secondary_identifiers":["DOID:8274","MEDGEN:234375","UMLS:C1336546"],"synonyms":[{"name":"angioma of synovium","type":"exact"},{"name":"angioma of the synovium","type":"exact"},{"name":"hemangioma of layer of synovial tissue","type":"exact"},{"name":"hemangioma of synovium","type":"exact"},{"name":"hemangioma of the synovium","type":"exact"},{"name":"layer of synovial tissue hemangioma","type":"exact"},{"name":"synovial hemangioma","type":"exact"}],"termid":"MONDO:0004519","xrefs":{"Monarch":{"xref_id":"0004519"}}}


id: PBO:0110461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional coactivator for ribosomal proteins via TOR signaling pathway Ifh1","termid":"PBO:0110461"}


id: GO:0005723
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small, compact region of heterochromatin located in the middle of the polytene chromosome chromocenter, which undergoes little or no replication during polytenization.","definition_xrefs":["PMID:8878678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pericentric heterochromatin","termid":"GO:0005721"},{"relation_name":"part_of","term_name":"polytene chromosome chromocenter","termid":"GO:0005701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005694"],"is_obsolete":false,"name":"alpha-heterochromatin","termid":"GO:0005723"}


id: PR:Q9C0X1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC18E5.14c gene.","definition_xrefs":["UniProtKB:Q9C0X1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C18E5.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18E5.14c","synonyms":[{"name":"Spom972h-SPBC18E5.14c","type":"exact"}],"termid":"PR:Q9C0X1"}


id: GO:0046609
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + solute(in) = solute(in) + sulfate(out), by a channel in a cell membrane whose opening is governed by the membrane potential.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete voltage-gated sulfate antiporter activity (obsolete GO:0046609)","synonyms":[{"name":"prestin","type":"narrow"},{"name":"voltage gated sulfate antiporter activity","type":"exact"},{"name":"voltage-dependent sulfate antiporter activity","type":"exact"},{"name":"voltage-sensitive sulfate antiporter activity","type":"exact"},{"name":"voltage-sensitive sulphate antiporter activity","type":"exact"}],"termid":"GO:0046609"}


id: PBO:0004867
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.4.16.6","termid":"PBO:0004867"}


id: PBO:0062083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 14 pseudogene","termid":"PBO:0062083"}


id: GO:0071388
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisone stimulus. Cortisone is a natural glucocorticoid steroid hormone that is metabolically convertible to cortisol. Cortisone is synthesized from cholesterol in the cortex of the adrenal gland under the stimulation of adrenocorticotropin hormone (ACTH). The main physiological effect of cortisone is on carbohydrate metabolism; it can stimulate increased glucose release from the liver, increased liver glycogen synthesis, and decreased utilization of glucose by the tissues.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cortisone","termid":"GO:0051413"},{"relation_name":"is_a","term_name":"cellular response to glucocorticoid stimulus","termid":"GO:0071385"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cortisone stimulus","termid":"GO:0071388"}


id: MONDO:0044211
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"urticaria","termid":"MONDO:0005492"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"idiopathic urticaria","secondary_identifiers":["SCTID:42265009","UMLS:C0157741","ICD10CM:L50.1","ICD9:708.1","MEDGEN:510411"],"synonyms":[{"name":"idiopathic angioedema-urticaria","type":"related"}],"termid":"MONDO:0044211","xrefs":{"Monarch":{"xref_id":"0044211"}}}


id: PBO:0080638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WDR86 antisense RNA 1","termid":"PBO:0080638"}


id: PBO:0041681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium dependent secretion activator 2","termid":"PBO:0041681"}


id: MONDO:0006701
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An epithelial neoplasm of the anterior pituitary gland in which the neoplastic cells do not stain with acidic or basic dyes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pituitary gland adenoma","termid":"MONDO:0006373"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromophobe adenoma","secondary_identifiers":["MESH:D000238","UMLS:C0001432","EFO:1000867","ICDO:8270/0","MEDGEN:1747","DOID:3828","NCIT:C2857"],"synonyms":[{"name":"chromophobe adenoma of pituitary gland","type":"exact"},{"name":"chromophobe adenoma of the pituitary gland","type":"exact"},{"name":"pituitary chromophobe adenoma","type":"exact"},{"name":"pituitary gland chromophobe adenoma","type":"exact"}],"termid":"MONDO:0006701","xrefs":{"Monarch":{"xref_id":"0006701"}}}


id: PBO:0053898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1186","termid":"PBO:0053898"}


id: GO:0052603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-chloro-4-nitrosobenzene + NADPH + H+ = 1-chloro-4-hydroxylaminobenzene + NADP+ + H2O.","definition_xrefs":["MetaCyc:RXN-8834"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-chloro-4-nitrosobenzene nitroreductase activity (obsolete GO:0052603)","termid":"GO:0052603"}


id: MOD:01469
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to L-selenocysteinyl tungsten bis(molybdopterin guanine dinucleotide) (not known as a natural, post-translational modification process).","definition_xrefs":["PubMed:11372198","PubMed:12220497","RESID:AA0376#CYS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tungsten containing modified residue","termid":"MOD:00746"},{"relation_name":"is_a","term_name":"pterin modified residue","termid":"MOD:00748"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-selenocysteine residue","termid":"MOD:02073"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-selenocysteinyl tungsten bis(molybdopterin guanine dinucleotide) (Cys)","termid":"MOD:01469"}


id: PBO:0030846
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_cell_tip,_with_protein_distributed_in_plasma_membrane_or_cortex","termid":"PBO:0030846"}


id: PBO:0003695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swi five-dependent recombination repair protein Sfr1","termid":"PBO:0003695"}


id: MONDO:0000432
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A clonal neoplasm of small B-lymphocytes, lymphoplasmacytoid cells, and plasma cells involving the bone marrow, lymph nodes, and the spleen. The majority of patients have a serum IgM paraprotein.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B-cell neoplasm","termid":"MONDO:0004095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"lymphoplasmacytic lymphoma","secondary_identifiers":["MEDGEN:473052","NCIT:C3212","DOID:0050747","UMLS:C0334633","ONCOTREE:LPL","ICDO:9671/3","ICDO:9761/3","ICD9:273.3","SCTID:190817009","icd11.foundation:2058944823"],"synonyms":[{"name":"Immunocytoma, lymphoplasmacytic type","type":"exact"},{"name":"lymphoma, lymphoplasmacytic, malignant","type":"exact"},{"name":"lymphoma, plasmacytic","type":"exact"},{"name":"lymphoplasmacytic lymphoma","type":"exact"},{"name":"lymphoplasmacytic lymphoma (Waldenstrom macroglobulinemia)","type":"exact"},{"name":"lymphoplasmacytoid lymphoma","type":"exact"}],"termid":"MONDO:0000432","xrefs":{"Monarch":{"xref_id":"0000432"}}}


id: PBO:0060572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 8","termid":"PBO:0060572"}


id: MONDO:0018573
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"diabetes mellitus","termid":"MONDO:0005015"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intrauterine growth restriction-short stature-early adult-onset diabetes syndrome","secondary_identifiers":["Orphanet:436144","UMLS:C5681180","GARD:21818","MEDGEN:1801791"],"termid":"MONDO:0018573","xrefs":{"Monarch":{"xref_id":"0018573"}}}


id: PBO:0040715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAF chromatin remodeling complex subunit BCL7A","termid":"PBO:0040715"}


id: MONDO:0007747
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"hereditary epidermal appendage anomaly","termid":"MONDO:0021026"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0006025"],"is_obsolete":false,"name":"isolated hyperchlorhidrosis","secondary_identifiers":["DOID:0111371","Orphanet:542657","OMIM:143860","GARD:17984","SCTID:709413001","MEDGEN:333560","UMLS:C1840437","ICD9:276.9"],"synonyms":[{"name":"hyperchlorhidrosis, isolated","type":"exact"},{"name":"isolated hyperchlorhidrosis","type":"exact"}],"termid":"MONDO:0007747","xrefs":{"Monarch":{"xref_id":"0007747"}}}


id: GO:0034933
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-hydroxy-6-methoxypyrene + XCH3 = 1,6-dimethoxypyrene + HX.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-hydroxy-6-methoxypyrene methyltransferase activity (obsolete GO:0034933)","termid":"GO:0034933"}


id: MONDO:0006263
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Langerhans cell histiocytosis (obsolete MONDO:0006263)","termid":"MONDO:0006263","xrefs":{"Monarch":{"xref_id":"0006263"}}}


id: PBO:0046253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongator acetyltransferase complex subunit 2","termid":"PBO:0046253"}


id: MONDO:0009811
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoma of middle ear","secondary_identifiers":["UMLS:C1850142","MEDGEN:342425","OMIM:259650","MESH:C564917"],"synonyms":[{"name":"osteoma of middle ear","type":"exact"}],"termid":"MONDO:0009811","xrefs":{"Monarch":{"xref_id":"0009811"}}}


id: MONDO:0003567
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inner ear disorder","termid":"MONDO:0002467"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bilateral hypoactive labyrinth","secondary_identifiers":["UMLS:C0155518","DOID:565","MEDGEN:510004","ICD9:386.54","SCTID:194375009"],"synonyms":[{"name":"hypoactive bilateral labyrinthine dysfunction","type":"exact"},{"name":"hypoactive labyrinth, bilateral","type":"exact"}],"termid":"MONDO:0003567","xrefs":{"Monarch":{"xref_id":"0003567"}}}


id: GO:0032274
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of a gonadotropin, any hormone that stimulates the gonads, especially follicle-stimulating hormone and luteinizing hormone.","definition_xrefs":["ISBN:0721662544","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocrine hormone secretion","termid":"GO:0060986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052","GO:0051179"],"is_obsolete":false,"name":"gonadotropin secretion","synonyms":[{"name":"gonadotrophin secretion","type":"exact"}],"termid":"GO:0032274"}


id: PBO:0034489
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_reverse_centromeric_outer_repeat_transcript_level","termid":"PBO:0034489"}


id: PBO:0072978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretoglobin family 2B member 2","termid":"PBO:0072978"}


id: GO:1905192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chloroplast fission.","definition_xrefs":["PMID:26862170","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle organization","termid":"GO:0033043"},{"relation_name":"regulates","term_name":"chloroplast fission","termid":"GO:0010020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of chloroplast fission","synonyms":[{"name":"regulation of chloroplast division","type":"exact"}],"termid":"GO:1905192"}


id: PBO:0084061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein (GAP) for yeast Rab family member Ypt6p; involved in vesicle mediated protein transport","termid":"PBO:0084061"}


id: PBO:0002387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gfo/idh/mocA family oxidoreductase (predicted)","termid":"PBO:0002387"}


id: GO:0043207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external biotic stimulus, an external stimulus caused by, or produced by living things.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to external stimulus","termid":"GO:0009605"},{"relation_name":"is_a","term_name":"response to biotic stimulus","termid":"GO:0009607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to external biotic stimulus","termid":"GO:0043207"}


id: PBO:0114115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex/TATA-binding protein associated factor/transcription factor TFIID complex WD repeat subunit Taf5","termid":"PBO:0114115"}


id: GO:1900791
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving shamixanthone.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"},{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"shamixanthone metabolic process","synonyms":[{"name":"shamixanthone metabolism","type":"exact"}],"termid":"GO:1900791"}


id: PR:O74810
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin-conjugating enzyme E2 K that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR24067:SF28","OMA:SCHPO03517","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-conjugating enzyme E2 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2D10.20","secondary_identifiers":["UniProtKB:O74810"],"synonyms":[{"name":"E2 ubiquitin-conjugating enzyme 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-UBE2K","type":"exact"},{"name":"ubiquitin carrier protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-protein ligase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74810"}


id: MONDO:0016941
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of chromosome 4","termid":"MONDO:0016924"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial duplication of the short arm of chromosome 4","secondary_identifiers":["icd11.foundation:1245616284","GARD:20861","UMLS:C5679719","Orphanet:262716","MEDGEN:1826041"],"synonyms":[{"name":"partial duplication of chromosome 4p","type":"exact"},{"name":"partial duplication of the short arm of chromosome type 4","type":"exact"},{"name":"partial trisomy of chromosome 4p","type":"exact"},{"name":"partial trisomy of the short arm of chromosome 4","type":"exact"}],"termid":"MONDO:0016941","xrefs":{"Monarch":{"xref_id":"0016941"}}}


id: PR:P36582
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pck1 gene.","definition_xrefs":["UniProtKB:P36582","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase C-like 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G8.14c","synonyms":[{"name":"Spom972h-pck1","type":"exact"}],"termid":"PR:P36582"}


id: MONDO:0006233
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A teratoma that arises from the testis or ovary.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"teratoma","termid":"MONDO:0002601"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gonadal teratoma","secondary_identifiers":["EFO:1000282","MEDGEN:475575","UMLS:C3273942","NCIT:C98291"],"synonyms":[{"name":"gonadal teratoma","type":"exact"},{"name":"teratoma, gonads","type":"exact"}],"termid":"MONDO:0006233","xrefs":{"Monarch":{"xref_id":"0006233"}}}


id: PBO:0090974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase Alg3","termid":"PBO:0090974"}


id: PBO:0109940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase, spliceosomal Prp43","termid":"PBO:0109940"}


id: FYPO:0003542
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the meiotic spindle pole body is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to meiotic spindle pole body","termid":"FYPO:0002771"},{"relation_name":"is_a","term_name":"abolished protein localization to microtubule cytoskeleton","termid":"FYPO:0004091"},{"relation_name":"is_a","term_name":"abolished protein localization during meiotic cell cycle","termid":"FYPO:0005208"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0000054","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to meiotic spindle pole body","synonyms":[{"name":"abolished protein localisation to meiotic spindle pole body","type":"exact"},{"name":"abolished protein localization to meiotic SPB","type":"exact"},{"name":"protein localization to meiotic spindle pole body abolished","type":"exact"}],"termid":"FYPO:0003542"}


id: MONDO:0001047
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete adrenal cortical hypofunction (obsolete MONDO:0001047)","termid":"MONDO:0001047","xrefs":{"Monarch":{"xref_id":"0001047"}}}


id: PBO:0027937
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_oxygen_consumption_during_vegetative_growth","termid":"PBO:0027937"}


id: GO:0038097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An Fc-epsilon receptor signaling pathway that results in the change in morphology and behavior of a mast cell resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the mast cell has specifically bound via IgE bound to Fc-epsilonRI receptors.","definition_xrefs":["GOC:phg","PMID:12413516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fc receptor mediated stimulatory signaling pathway","termid":"GO:0002431"},{"relation_name":"is_a","term_name":"positive regulation of mast cell activation","termid":"GO:0033005"},{"relation_name":"is_a","term_name":"Fc-epsilon receptor signaling pathway","termid":"GO:0038095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mast cell activation by Fc-epsilon receptor signaling pathway","synonyms":[{"name":"Fc epsilon RI-dependent mast cell activation","type":"exact"},{"name":"Fc epsilon RI-mediated mast cell activation","type":"exact"},{"name":"positive regulation of mast cell activation by Fc-epsilon receptor signalling pathway","type":"exact"}],"termid":"GO:0038097"}


id: SO:0000594
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.","direct_ancestors":[{"relation_name":"derives_from","term_name":"H_ACA_box_snoRNA_primary_transcript","termid":"SO:0000596"},{"relation_name":"is_a","term_name":"snoRNA","termid":"SO:0000275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H_ACA_box_snoRNA","synonyms":[{"name":"H ACA box snoRNA","type":"exact"},{"name":"H/ACA box snoRNA","type":"exact"},{"name":"SNORA","type":"exact"},{"name":"box H/ACA snoRNA","type":"exact"}],"termid":"SO:0000594"}


id: PBO:0085303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pho85p cyclin of the Pho80p subfamily; forms a functional kinase complex with Pho85p which phosphorylates Mmr1p and is regulated by Pho81p; involved in glycogen metabolism, expression is cell-cycle regulated; PCL7 has a paralog, PCL6, that arose from the whole genome duplication","termid":"PBO:0085303"}


id: GO:0051515
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of monopolar cell growth, polarized growth from one end of a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of unidimensional cell growth","termid":"GO:0051512"},{"relation_name":"is_a","term_name":"regulation of monopolar cell growth","termid":"GO:0051513"},{"relation_name":"positively_regulates","term_name":"monopolar cell growth","termid":"GO:0042814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of monopolar cell growth","synonyms":[{"name":"stimulation of monopolar cell growth","type":"narrow"},{"name":"up regulation of monopolar cell growth","type":"exact"},{"name":"up-regulation of monopolar cell growth","type":"exact"},{"name":"upregulation of monopolar cell growth","type":"exact"}],"termid":"GO:0051515"}


id: GO:0006100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving intermediates of the tricarboxylic acid cycle.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete tricarboxylic acid cycle intermediate metabolic process (obsolete GO:0006100)","synonyms":[{"name":"Krebs cycle intermediate metabolic process","type":"exact"},{"name":"Krebs cycle intermediate metabolism","type":"exact"},{"name":"TCA intermediate metabolic process","type":"exact"},{"name":"TCA intermediate metabolism","type":"exact"},{"name":"citric acid cycle intermediate metabolic process","type":"exact"},{"name":"citric acid cycle intermediate metabolism","type":"exact"},{"name":"tricarboxylic acid cycle intermediate metabolic process","type":"exact"},{"name":"tricarboxylic acid cycle intermediate metabolism","type":"exact"}],"termid":"GO:0006100"}


id: FYPO:0005239
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-tyrosine measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular amino acid level","termid":"FYPO:0003986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular tyrosine level","synonyms":[{"name":"increased cellular L-tyrosine level","type":"exact"},{"name":"increased cellular tyrosine level during mitotic cell cycle","type":"related"},{"name":"increased cellular tyrosine level during vegetative growth","type":"exact"},{"name":"increased tyrosine accumulation","type":"related"}],"termid":"FYPO:0005239"}


id: PBO:0042902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement factor I","termid":"PBO:0042902"}


id: PBO:0034369
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-commensually_interacts_with","termid":"PBO:0034369"}


id: MONDO:0012862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"excluded_subClassOf","term_name":"attention deficit-hyperactivity disorder","termid":"MONDO:0007743"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"attention deficit-hyperactivity disorder, susceptibility to, 5","secondary_identifiers":["UMLS:C2676741","MEDGEN:394114","OMIM:612311"],"synonyms":[{"name":"ADHD5","type":"exact"},{"name":"attention Deficit-hyperactivity disorder, susceptibility to, type 5","type":"exact"},{"name":"attention deficit-hyperactivity disorder, susceptibility to, 5","type":"exact"},{"name":"motor timing quantitative trait locus","type":"related"}],"termid":"MONDO:0012862","xrefs":{"Monarch":{"xref_id":"0012862"}}}


id: MONDO:0009725
data:
  {"annotated_genes":["SJAG_03379"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86477],"is_not":false,"summary":null,"term":"MONDO:0009725"}]},"cv_name":"mondo","definition":"An autosomal recessive inherited myopathy caused by mutations in the NEB gene. It is characterized by generalized hypotonia and skeletal muscle weakness.","definition_xrefs":["NCIT:C118784"],"direct_ancestors":[{"relation_name":"is_a","term_name":"severe congenital nemaline myopathy","termid":"MONDO:0015735"},{"relation_name":"is_a","term_name":"intermediate nemaline myopathy","termid":"MONDO:0015736"},{"relation_name":"is_a","term_name":"typical nemaline myopathy","termid":"MONDO:0015737"},{"relation_name":"is_a","term_name":"childhood-onset nemaline myopathy","termid":"MONDO:0015738"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03379":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"nemaline myopathy 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C538349","DOID:0110928","OMIM:256030","UMLS:C1850569","GARD:15209","MEDGEN:342534"],"synonyms":[{"name":"NEB nemaline myopathy","type":"exact"},{"name":"NEM2","type":"exact"},{"name":"nemaline myopathy 2","type":"exact"},{"name":"nemaline myopathy 2, autosomal recessive","type":"exact"},{"name":"nemaline myopathy caused by mutation in NEB","type":"exact"},{"name":"nemaline myopathy type 2","type":"exact"}],"termid":"MONDO:0009725","terms_by_termid":{"MONDO:0009725":null},"xrefs":{"Monarch":{"xref_id":"0009725"}}}


id: MONDO:0004442
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare malignant germ cell tumor that arises from the testis and is characterized by the presence of embryoid bodies.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant testicular germ cell tumor","termid":"MONDO:0003510"},{"relation_name":"is_a","term_name":"polyembryoma","termid":"MONDO:0015863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"testis polyembryoma","secondary_identifiers":["MEDGEN:271324","UMLS:C1514200","DOID:8042","NCIT:C40962"],"synonyms":[{"name":"polyembryoma of testis","type":"exact"},{"name":"polyembryoma of the testis","type":"exact"},{"name":"testicular polyembryoma","type":"exact"}],"termid":"MONDO:0004442","xrefs":{"Monarch":{"xref_id":"0004442"}}}


id: MONDO:0008136
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary optic neuropathy","termid":"MONDO:0020249"},{"relation_name":"is_a","term_name":"PAX6-related ocular dysgenesis","termid":"MONDO:0800183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0005328","MONDO:0004992"],"is_obsolete":false,"name":"isolated optic nerve hypoplasia","secondary_identifiers":["MEDGEN:322281","icd11.foundation:609162974","NORD:1528","Orphanet:637061","UMLS:C1833797","Orphanet:137902","SCTID:724999003","OMIM:165550","DOID:0111531","GARD:8419"],"synonyms":[{"name":"Optic Nerve Hypoplasia","type":"exact"},{"name":"familial bilateral optic nerve hypoplasia","type":"exact"},{"name":"isolated optic nerve hypoplasia/aplasia","type":"related"},{"name":"optic nerve aplasia, bilateral","type":"related"},{"name":"optic nerve hypoplasia","type":"related"},{"name":"optic nerve hypoplasia, bilateral","type":"exact"},{"name":"optic nerve hypoplasia, familial bilateral","type":"exact"}],"termid":"MONDO:0008136","xrefs":{"Monarch":{"xref_id":"0008136"}}}


id: GO:0010129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cyclohexane-1-carboxylate, a alicyclic acid, in the absence of oxygen.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anaerobic cyclohexane-1-carboxylate catabolic process","secondary_identifiers":["MetaCyc:PWY-301"],"synonyms":[{"name":"anaerobic cyclohexane-1-carboxylate breakdown","type":"exact"},{"name":"anaerobic cyclohexane-1-carboxylate catabolism","type":"exact"},{"name":"anaerobic cyclohexane-1-carboxylate degradation","type":"exact"}],"termid":"GO:0010129"}


id: GO:0019785
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A thiol-dependent isopeptidase activity that cleaves ISG15 from a target protein to which it is conjugated.","definition_xrefs":["GOC:mah","PMID:30213559"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysteine-type peptidase activity","termid":"GO:0008234"},{"relation_name":"is_a","term_name":"ubiquitin-like protein peptidase activity","termid":"GO:0019783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0003824","GO:0008233","GO:0016787"],"is_obsolete":false,"name":"ISG15-specific peptidase activity","secondary_identifiers":["Reactome:R-HSA-9729725","Reactome:R-HSA-1678841","Reactome:R-HSA-9755244","Reactome:R-HSA-5653786"],"synonyms":[{"name":"ISG15-specific protease activity","type":"exact"}],"termid":"GO:0019785"}


id: GO:0075343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The alteration by an organism of the levels of abscisic acid in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of abscisic acid levels in host (obsolete GO:0075343)","termid":"GO:0075343"}


id: PBO:0063943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl cis/trans isomerase, NIMA-interacting 4","termid":"PBO:0063943"}


id: PBO:0039502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain containing 26","termid":"PBO:0039502"}


id: GO:0018028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The myristoylation of peptidyl-lysine to form peptidyl-N6-myristoyl-L-lysine.","definition_xrefs":["RESID:AA0078"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-lysine myristoylation (obsolete GO:0018028)","synonyms":[{"name":"peptidyl-lysine myristylation","type":"exact"}],"termid":"GO:0018028"}


id: PBO:0076528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 41","termid":"PBO:0076528"}


id: PBO:0085021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nicotinic acid mononucleotide adenylyltransferase; catalyzes the transfer of the adenylyl moiety of ATP to nicotinamide mononucleotide to form NAD; involved in de novo and salvage synthesis of NAD(+); homolog of human NMNAT; NMA2 has a paralog, NMA1, that arose from the whole genome duplication","termid":"PBO:0085021"}


id: PBO:0044214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cortactin","termid":"PBO:0044214"}


id: PBO:0040558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B3GNTL1 pseudogene 1","termid":"PBO:0040558"}


id: SO:0001454
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A negatively charged, hydorophilic amino acid encoded by the codons GAA and GAG.","direct_ancestors":[{"relation_name":"is_a","term_name":"amino_acid","termid":"SO:0001237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamic_acid","synonyms":[{"name":"E","type":"exact"},{"name":"Glu","type":"exact"},{"name":"glutamic acid","type":"exact"}],"termid":"SO:0001454"}


id: PBO:0075291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNX30 divergent transcript","termid":"PBO:0075291"}


id: PBO:0087978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNAHis guanylyltransferase; adds a guanosine residue to the 5' end of tRNAH is after transcription and RNase P cleavage; can also catalyze reverse (3'-5') polymerization with certain substrates in a template-dependent reaction; couples nuclear division and migration to cell budding and cytokinesis; essential enzyme conserved among eukaryotes","termid":"PBO:0087978"}


id: GO:0002040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The extension of new blood vessels from existing vessels into avascular tissues, this process includes the specialization of endothelial cells into leading tip and stalk cells, proliferation and migration of the endothelial cells and cell adhesion resulting in angiogenic sprout fusion or lumen formation.","definition_xrefs":["PMID:16391003","PMID:23031691"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angiogenesis","termid":"GO:0001525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sprouting angiogenesis","termid":"GO:0002040"}


id: MONDO:0005942
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute and potentially fatal metabolic disorder characterized by cerebral edema, fatty liver and hypoglycemia. It occurs primarily in children and has been associated with the use of aspirin for the treatment of viral infections. However, it can also occur in the absence of aspirin use.","definition_xrefs":["NCIT:C34983"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"rheumatic disorder","termid":"MONDO:0005554"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Reye syndrome","secondary_identifiers":["MESH:D012202","EFO:0007467","MEDGEN:19772","UMLS:C0035400","ICD9:331.81","Orphanet:3096","GARD:7570","SCTID:74351001","DOID:14525","icd11.foundation:649014905","MedDRA:10039012"],"synonyms":[{"name":"Reye's syndrome","type":"exact"}],"termid":"MONDO:0005942","xrefs":{"Monarch":{"xref_id":"0005942"}}}


id: PBO:0109002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary microtubule associated protein 2","termid":"PBO:0109002"}


id: GO:0055022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle growth.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardiac muscle tissue growth","termid":"GO:0055021"},{"relation_name":"is_a","term_name":"negative regulation of heart growth","termid":"GO:0061117"},{"relation_name":"negatively_regulates","term_name":"cardiac muscle tissue growth","termid":"GO:0055017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cardiac muscle tissue growth","synonyms":[{"name":"down regulation of cardiac muscle growth","type":"exact"},{"name":"down-regulation of cardiac muscle growth","type":"exact"},{"name":"downregulation of cardiac muscle growth","type":"exact"},{"name":"inhibition of cardiac muscle growth","type":"narrow"},{"name":"negative regulation of heart muscle growth","type":"related"}],"termid":"GO:0055022"}


id: PBO:0058998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malonyl-CoA decarboxylase","termid":"PBO:0058998"}


id: GO:0008075
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate.","definition_xrefs":["EC:4.6.1.2"],"gene_count":0,"genotype_count":0,"name":"obsolete receptor guanylate cyclase activity (obsolete GO:0008075)","synonyms":[{"name":"receptor guanylate cyclase activity","type":"exact"}],"termid":"GO:0008075"}


id: GO:0060344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of creating a trabecula in the liver. A trabecula is a tissue element in the form of a small beam, strut or rod.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trabecula formation","termid":"GO:0060343"},{"relation_name":"part_of","term_name":"liver development","termid":"GO:0001889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"liver trabecula formation","synonyms":[{"name":"liver trabecula biogenesis","type":"related"},{"name":"liver trabeculation","type":"exact"}],"termid":"GO:0060344"}


id: GO:0070587
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of attachment of a cell to another cell affecting gastrulation.","definition_xrefs":["GOC:dsf","PMID:19091770"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-cell adhesion","termid":"GO:0022407"},{"relation_name":"regulates","term_name":"cell-cell adhesion involved in gastrulation","termid":"GO:0070586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"regulation of cell-cell adhesion involved in gastrulation","termid":"GO:0070587"}


id: PBO:0041516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 15 open reading frame 48","termid":"PBO:0041516"}


id: PBO:0083090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA binding transcriptional activator; mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain","termid":"PBO:0083090"}


id: GO:0061386
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The closure of the temporary ventral gap in the optic cup that contributes to its shaping.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelial sheet","termid":"GO:0002011"},{"relation_name":"part_of","term_name":"optic cup morphogenesis involved in camera-type eye development","termid":"GO:0002072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"closure of optic fissure","synonyms":[{"name":"closure or choriod fissure","type":"related"}],"termid":"GO:0061386"}


id: PBO:0060465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NALF1 intronic transcript 1","termid":"PBO:0060465"}


id: PBO:0060751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B3 pseudogene 1","termid":"PBO:0060751"}


id: GO:0015994
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin-containing compound metabolic process","termid":"GO:0006778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"chlorophyll metabolic process","synonyms":[{"name":"chlorophyll metabolism","type":"exact"}],"termid":"GO:0015994"}


id: PBO:0031805
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_G1/S_phase_transition","termid":"PBO:0031805"}


id: GO:0106157
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyzes the reaction: 2-oxoglutarate + [protein]-L-arginine + O2 = [protein]-(3R)-3-hydroxy-L-arginine + CO2 + succinate.","definition_xrefs":["PMID:29563586"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0140096","GO:0016491"],"is_obsolete":false,"name":"peptidyl-arginine 3-dioxygenase activity","secondary_identifiers":["EC:1.14.11.73","Reactome:R-HSA-9629869","Reactome:R-HSA-9629888","RHEA:56744","GO:0140554"],"synonyms":[{"name":"L-arginine 3-hydroxylase activity","type":"exact"}],"termid":"GO:0106157"}


id: GO:0002123
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Aggressive behavior induced by frustration and directed against an available target.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aggressive behavior","termid":"GO:0002118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"irritable aggressive behavior","synonyms":[{"name":"irritable aggression","type":"exact"}],"termid":"GO:0002123"}


id: MONDO:0007920
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A frequent form of late-onset, primary lymphedema characterized by lower limb lymphedema typically developing during puberty.","definition_xrefs":["Orphanet:90186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"craniofacial dystonia","termid":"MONDO:0000486"},{"relation_name":"is_a","term_name":"lymphatic malformation","termid":"MONDO:0019313"},{"relation_name":"is_a","term_name":"neurovascular disorder","termid":"MONDO:0043218"},{"relation_name":"is_a","term_name":"inherited dystonia","termid":"MONDO:0044807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0003441","MONDO:0005046"],"is_obsolete":false,"name":"lymphatic malformation 5","secondary_identifiers":["SCTID:230325003","GARD:3324","MESH:C562467","SCTID:400040008","MedDRA:10027138","UMLS:C4746631","MEDGEN:1648463","DOID:0070213","OMIM:153200"],"synonyms":[{"name":"LMPH2","type":"exact"},{"name":"Meige disease","type":"exact"},{"name":"Meige lymphedema","type":"exact"},{"name":"hereditary lymphedema type II","type":"exact"},{"name":"late-onset lymphedema","type":"exact"},{"name":"late-onset primary lymphedema","type":"exact"},{"name":"lymphedema hereditary type 2","type":"related"},{"name":"lymphedema praecox","type":"related"},{"name":"lymphedema preacox","type":"exact"},{"name":"lymphedema, hereditary, II","type":"related"},{"name":"lymphedema, late-onset","type":"related"}],"termid":"MONDO:0007920","xrefs":{"Monarch":{"xref_id":"0007920"}}}


id: PBO:0088586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial cytosine-mismatch binding protein 1, candidate TFAM ortholog","termid":"PBO:0088586"}


id: PBO:0031465
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_nigericin","termid":"PBO:0031465"}


id: GO:0008229
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binds to microorganisms or other particulate material (for example, foreign erythrocytes) to increase the susceptibility of the latter to phagocytosis.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete opsonin activity (obsolete GO:0008229)","synonyms":[{"name":"opsonin activity","type":"exact"}],"termid":"GO:0008229"}


id: PATO:0001754
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A peramorphic growth quality which is due to an earlier onset.","definition_xrefs":["PATOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peramorphic growth","termid":"PATO:0001752"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"predisplaced growth","synonyms":[{"name":"precocious growth","type":"exact"}],"termid":"PATO:0001754"}


id: PBO:0068377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 170","termid":"PBO:0068377"}


id: FYPO:0003556
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the termination of RNA transcription from a DNA template is abnormal.","definition_xrefs":["PomBase:mah","GO:0006353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transcription during vegetative growth","termid":"FYPO:0004064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000294","FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal transcription termination","synonyms":[{"name":"abnormal DNA-templated transcription, termination","type":"exact"},{"name":"abnormal termination of transcription","type":"exact"},{"name":"abnormal transcription termination during mitotic cell cycle","type":"related"},{"name":"abnormal transcription termination during vegetative growth","type":"exact"}],"termid":"FYPO:0003556"}


id: PBO:0114295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein, possible cell surface protein Mug4","termid":"PBO:0114295"}


id: PBO:0116540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial protein Lcl3","termid":"PBO:0116540"}


id: PBO:0051997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jumonji and AT-rich interaction domain containing 2","termid":"PBO:0051997"}


id: MONDO:0017313
data:
  {"annotated_genes":["SJAG_03712","SJAG_01466","SJAG_01616","SJAG_03447"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85096],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009238"},{"annotations":[85026,85025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009353"},{"annotations":[85858],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032705"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of vitamin and non-protein cofactor absorption and transport","termid":"MONDO:0017758"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01466":null,"SJAG_01616":null,"SJAG_03447":null,"SJAG_03712":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"disorder of folate metabolism and transport","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:21131","MEDGEN:1842423","icd11.foundation:2081529009","Orphanet:285657","UMLS:C5681010"],"termid":"MONDO:0017313","terms_by_termid":{"MONDO:0009238":null,"MONDO:0009353":null,"MONDO:0032705":null},"xrefs":{"Monarch":{"xref_id":"0017313"}}}


id: PBO:0075213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntrophin gamma 1","termid":"PBO:0075213"}


id: PBO:0000643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease (predicted)","termid":"PBO:0000643"}


id: PATO:0001801
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Dehydrated"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"water composition","termid":"PATO:0001800"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased water composition","synonyms":[{"name":"dehydrated","type":"exact"},{"name":"dry","type":"related"}],"termid":"PATO:0001801"}


id: PBO:0082420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase; NADPH-dependent 1-acyl dihydroxyacetone phosphate reductase involved in phosphatidic acid biosynthesis; lipid droplet triacylglycerol lipase involved in mobilization of non-polar lipids; found in lipid particles, endoplasmic reticulum and mitochondrial outer membrane; forms NADPH-regulated channel in mitochondrial outer membrane; required for spore germination; role in cell wall biosynthesis; capable of metabolizing steroid hormones","termid":"PBO:0082420"}


id: PBO:0040465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP13A5 antisense RNA 1","termid":"PBO:0040465"}


id: GO:0050133
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(6)-hydroxy-L-lysine + acetyl-CoA = N(6)-acetyl-N(6)-hydroxy-L-lysine + CoA.","definition_xrefs":["EC:2.3.1.102","RHEA:22388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"N6-hydroxylysine O-acetyltransferase activity","secondary_identifiers":["MetaCyc:N6-HYDROXYLYSINE-O-ACETYLTRANSFERASE-RXN","KEGG_REACTION:R03168"],"synonyms":[{"name":"N(6)-hydroxylysine acetylase activity","type":"related"},{"name":"N6-hydroxylysine acetylase activity","type":"related"},{"name":"N6-hydroxylysine:acetyl CoA N6-transacetylase activity","type":"related"},{"name":"acetyl-CoA:6-N-hydroxy-L-lysine 6-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:N6-hydroxy-L-lysine 6-acetyltransferase activity","type":"related"}],"termid":"GO:0050133"}


id: PBO:0057828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3147","termid":"PBO:0057828"}


id: GO:0033307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that generates phytol, (2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-ol, from derivatives of it without de novo synthesis.","definition_xrefs":["MetaCyc:PWY-5107","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phytol biosynthetic process","termid":"GO:0033520"},{"relation_name":"is_a","term_name":"cellular metabolic compound salvage","termid":"GO:0043094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"phytol salvage","synonyms":[{"name":"phytol salvage pathway","type":"exact"}],"termid":"GO:0033307"}


id: GO:0038065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by collagen binding to a cell surface receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:bf","GOC:uh","PMID:21568710"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"collagen-activated signaling pathway","synonyms":[{"name":"collagen-activated signalling pathway","type":"exact"}],"termid":"GO:0038065"}


id: PBO:0040874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bone morphogenetic protein 2","termid":"PBO:0040874"}


id: GO:1990730
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex between the ATPase VCP (p97) and its cofactor p47 (NSFL1C). In human, the protein complex consists of one homotrimer of NSFL1C/p47 per homohexamer of VCP/p97.","definition_xrefs":["GOC:bf","PMID:9214505","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"VCP-NSFL1C complex","synonyms":[{"name":"p97-p47 complex","type":"exact"}],"termid":"GO:1990730"}


id: GO:0080054
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of nitrate ions (NO3-) from one side of a membrane to the other. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations.","definition_xrefs":["PMID:19050168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrate transmembrane transporter activity","termid":"GO:0015112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"low-affinity nitrate transmembrane transporter activity","synonyms":[{"name":"low affinity nitrate transmembrane transporter activity","type":"exact"}],"termid":"GO:0080054"}


id: PBO:0069563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 835, pseudogene","termid":"PBO:0069563"}


id: GO:0097636
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the autophagosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:mf","GOC:autophagy"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of autophagosome membrane (obsolete GO:0097636)","synonyms":[{"name":"intrinsic component of autophagic vacuole membrane","type":"exact"},{"name":"intrinsic to autophagic vacuole membrane","type":"narrow"}],"termid":"GO:0097636"}


id: MONDO:1012262
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"stringhalt, non-human animal","termid":"MONDO:1011631"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stringhalt, cattle","secondary_identifiers":["OMIA:000950-9913"],"termid":"MONDO:1012262","xrefs":{"Monarch":{"xref_id":"1012262"}}}


id: GO:0060502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of epithelial cells, resulting in the expansion of a cell population that contributes to the shaping of the lung.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell proliferation","termid":"GO:0050673"},{"relation_name":"part_of","term_name":"lung morphogenesis","termid":"GO:0060425"},{"relation_name":"part_of","term_name":"lung epithelium development","termid":"GO:0060428"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell proliferation involved in lung morphogenesis","termid":"GO:0060502"}


id: PBO:0054581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1983","termid":"PBO:0054581"}


id: PBO:0052840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 2-5, pseudogene","termid":"PBO:0052840"}


id: PR:O74461
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug123 gene.","definition_xrefs":["UniProtKB:O74461","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 123 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.17","synonyms":[{"name":"Spom972h-mug123","type":"exact"}],"termid":"PR:O74461"}


id: FYECO:0000415
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which tea tree oil was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ tea tree oil","synonyms":[{"name":"tea tree oil added","type":"exact"}],"termid":"FYECO:0000415"}


id: GO:0009111
data:
  {"annotated_genes":["SJAG_01543"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100658],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042820"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body, carried out by individual cells.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin metabolic process","termid":"GO:0006766"},{"relation_name":"is_a","term_name":"small molecule catabolic process","termid":"GO:0044282"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01543":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006766"],"is_obsolete":false,"name":"vitamin catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"vitamin breakdown","type":"exact"},{"name":"vitamin catabolism","type":"exact"},{"name":"vitamin degradation","type":"exact"}],"termid":"GO:0009111","terms_by_termid":{"GO:0042820":null}}


id: PBO:0083550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized ORF YJL181W","termid":"PBO:0083550"}


id: MONDO:0019929
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The 49,XXXXY syndrome represents a chromosomal anomaly of the aneuploidic type characterized by the presence of three extra X chromosomes in males.","definition_xrefs":["Orphanet:96264"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"sex chromosome disorder of sex development","termid":"MONDO:0017975"},{"relation_name":"is_a","term_name":"chromosome X disorder","termid":"MONDO:0700027"},{"relation_name":"is_a","term_name":"pentasomy","termid":"MONDO:0700085"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"49,XXXXY syndrome","secondary_identifiers":["GARD:5679","NCIT:C185635","SCTID:38847009","UMLS:C0265499","MESH:D007713","ICD9:758.81","MEDGEN:75573"],"synonyms":[{"name":"49,XXXXY","type":"related"},{"name":"XXXXY syndrome","type":"related"}],"termid":"MONDO:0019929","xrefs":{"Monarch":{"xref_id":"0019929"}}}


id: PBO:0066512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulatory factor X8","termid":"PBO:0066512"}


id: GO:0016672
data:
  {"annotated_genes":["SJAG_02599"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070224"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces quinone or a related compound.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors","termid":"GO:0016667"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02599":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:1.8.5.-"],"synonyms":[{"name":"oxidoreductase activity, acting on sulphur group of donors, quinone or similar compound as acceptor","type":"exact"}],"termid":"GO:0016672","terms_by_termid":{"GO:0070224":null}}


id: GO:0018776
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: trans-3-chloroacrylic acid + H2O = H+ + malonate semialdehyde.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete trans-chloroacrylic acid dehalogenase activity (obsolete GO:0018776)","termid":"GO:0018776"}


id: GO:0140013
data:
  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id: PBO:0031293
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id: GO:1901845
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id: GO:1990323
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id: GO:1904155
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id: _global:capable_of
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id: PBO:0052968
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id: MONDO:0019824
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id: PBO:0042829
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id: MONDO:0013839
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id: PBO:0078360
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id: PBO:0034594
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id: PBO:0061884
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id: PR:P10989
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id: MONDO:0010919
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id: PBO:0065023
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 3 pseudogene 2","termid":"PBO:0065023"}


id: PBO:0052225
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id: PR:P87316
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id: PBO:0087080
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id: PBO:0063912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha","termid":"PBO:0063912"}


id: PBO:0060320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myoneurin","termid":"PBO:0060320"}


id: PBO:0089116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation factor EF2 methyltransferase Efm3","termid":"PBO:0089116"}


id: GO:0080115
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the tail region of a myosin XI heavy chain.","definition_xrefs":["PMID:18703495"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin tail binding","termid":"GO:0032029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008092","GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"myosin XI tail binding","termid":"GO:0080115"}


id: PBO:0059033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"matrix metallopeptidase 23A (pseudogene)","termid":"PBO:0059033"}


id: PBO:0049975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIG1 hypoxia inducible domain family member 2A","termid":"PBO:0049975"}


id: PBO:0060357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYOCD antisense RNA 1","termid":"PBO:0060357"}


id: MONDO:0014812
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete metabolic encephalomyopathic crises, recurrent, with rhabdomyolysis, cardiac arrhythmias, and neurodegeneration (obsolete MONDO:0014812)","termid":"MONDO:0014812","xrefs":{"Monarch":{"xref_id":"0014812"}}}


id: PBO:0001066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Erv25 (predicted)","termid":"PBO:0001066"}


id: FYPO:0005037
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the phosphorylation of the serine residue at position 5 within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II normal (i.e. indistinguishable from wild type) when the cell is subject to nitrogen starvation.","definition_xrefs":["PMID:22144909","GO:0071620","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during nitrogen starvation","termid":"FYPO:0005035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during nitrogen starvation","synonyms":[{"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during nitrogen deprivation","type":"exact"},{"name":"decreased phosphorylation of RNA polymerase II CTD serine 5 residues during nitrogen depletion","type":"exact"},{"name":"reduced phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during nitrogen starvation","type":"exact"}],"termid":"FYPO:0005037"}


id: PBO:0088367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Arv1-like family protein Arv1","termid":"PBO:0088367"}


id: FYPO:0002668
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of peptide-serine-N-acetyltransferase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal peptide alpha-N-acetyltransferase activity","termid":"FYPO:0007838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal peptide-serine-N-acetyltransferase activity","termid":"FYPO:0002668"}


id: PBO:0002014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amidohydrolase","termid":"PBO:0002014"}


id: RO:0002009
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation that applies between a cell(c) and a gene(g) , where the process of 'transcription, DNA templated (GO_0006351)' is occuring in in cell c and that process has input gene g.","direct_ancestors":[{"relation_name":"is_a","term_name":"expresses","termid":"RO:0002292"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell_expresses","termid":"RO:0002009"}


id: PATO:0000143
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000143 addictive substance (obsolete PATO:0000143)","termid":"PATO:0000143"}


id: GO:0102482
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-deoxy-D-glucuronate = 5-dehydro-2-deoxy-D-gluconate.","definition_xrefs":["RHEA:25840","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"5-deoxy-D-glucuronate isomerase activity","secondary_identifiers":["MetaCyc:RXN-14150","EC:5.3.1.30"],"termid":"GO:0102482"}


id: FYPO:0004469
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a phosphatase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal phosphatase activity","termid":"FYPO:0004469"}


id: GO:1904031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cyclin-dependent protein kinase activity.","definition_xrefs":["GOC:TermGenie","PMID:22995177","GO_REF:0000059","GOC:als"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein kinase activity","termid":"GO:0045860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cyclin-dependent protein kinase activity","synonyms":[{"name":"activation of cyclin-dependent protein kinase activity","type":"narrow"},{"name":"up regulation of cyclin-dependent protein kinase activity","type":"exact"},{"name":"up-regulation of cyclin-dependent protein kinase activity","type":"exact"},{"name":"upregulation of cyclin-dependent protein kinase activity","type":"exact"}],"termid":"GO:1904031"}


id: GO:1904961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the quiescent center. This process pertains to the physical shaping of a rudimentary structure.","definition_xrefs":["GO_REF:0000084","PMID:21233333","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"quiescent center organization","synonyms":[{"name":"quiescent center structural organization","type":"exact"}],"termid":"GO:1904961"}


id: MONDO:0004492
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory process affecting the mediastinum.","definition_xrefs":["NCIT:C26827"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"connective tissue disorder","termid":"MONDO:0003900"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediastinitis","secondary_identifiers":["MESH:D008480","UMLS:C0025064","ICD10CM:J98.51","MEDGEN:9921","SCTID:47597000","ICD9:519.2","DOID:819","icd11.foundation:1612791605"],"termid":"MONDO:0004492","xrefs":{"Monarch":{"xref_id":"0004492"}}}


id: SO:0001868
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A candidate gene whose association with a trait is based on the gene's location on a chromosome.","definition_xrefs":["GMOD:ea"],"direct_ancestors":[{"relation_name":"is_a","term_name":"candidate_gene","termid":"SO:0001867"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"positional_candidate_gene","synonyms":[{"name":"positional candidate gene","type":"exact"},{"name":"positional target gene","type":"related"}],"termid":"SO:0001868"}


id: PBO:0001081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snoRNP pseudouridylase box H/ACA snoRNP complex protein (predicted)","termid":"PBO:0001081"}


id: PBO:0049644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 47","termid":"PBO:0049644"}


id: FYPO:0008249
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at one or more protein-coding genes is decreased.","definition_xrefs":["PMID:25356590","PomBase:pc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to chromatin during vegetative growth","termid":"FYPO:0002909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to chromatin at protein coding gene","termid":"FYPO:0008249"}


id: FYPO:0008111
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which snRNA modification is abnormal. All snRNA modification may be abnormal, or one or more specific snRNA modifications may be selectively affected.","definition_xrefs":["PMID:37403782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA modification","termid":"FYPO:0000370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000294","FYPO:0001320"],"is_obsolete":false,"name":"abnormal snRNA modification","termid":"FYPO:0008111"}


id: PBO:0087505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of G protein involved in pheromone response; GTP-binding alpha subunit of heterotrimeric G protein; negatively regulates mating pathway by sequestering G(beta)gamma and triggering an adaptive response; activates Vps34p at endosome; protein abundance increases in response to DNA replication stress; mutations in human homolog GNAS associated with McCune-Albright syndrome","termid":"PBO:0087505"}


id: PBO:0086912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative Y' element ATP-dependent helicase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YML133C contains an intron","termid":"PBO:0086912"}


id: PBO:0001038
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter contains RLM1 element","termid":"PBO:0001038"}


id: MONDO:0003625
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0003625 (obsolete MONDO:0003625)","termid":"MONDO:0003625","xrefs":{"Monarch":{"xref_id":"0003625"}}}


id: GO:0004148
data:
  {"annotated_genes":["SJAG_03290"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71356],"is_not":false,"summary":null,"term":"GO:0004148"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+.","definition_xrefs":["EC:1.8.1.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor","termid":"GO:0016668"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"dihydrolipoyl dehydrogenase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:1.8.1.4-RXN","Reactome:R-HSA-5694018","Reactome:R-HSA-9861616","Reactome:R-HSA-9858589","Reactome:R-HSA-1222412","Reactome:R-HSA-9853499","Reactome:R-HSA-9907572","RHEA:15045","Reactome:R-HSA-9859172"],"synonyms":[{"name":"E3 component of alpha-ketoacid dehydrogenase complexes activity","type":"related"},{"name":"L-protein activity","type":"related"},{"name":"LDP-Glc activity","type":"narrow"},{"name":"LDP-Val activity","type":"narrow"},{"name":"dehydrolipoate dehydrogenase activity","type":"related"},{"name":"diaphorase activity","type":"related"},{"name":"dihydrolipoamide dehydrogenase activity","type":"related"},{"name":"dihydrolipoamide reduction","type":"related"},{"name":"dihydrolipoamide:NAD+ oxidoreductase","type":"related"},{"name":"dihydrolipoic dehydrogenase activity","type":"related"},{"name":"dihydrolipoylprotein reduction","type":"related"},{"name":"dihydrothioctic dehydrogenase activity","type":"related"},{"name":"glycine-cleavage system L-protein activity","type":"related"},{"name":"lipoamide dehydrogenase (NADH) activity","type":"related"},{"name":"lipoamide oxidoreductase (NADH) activity","type":"related"},{"name":"lipoamide reductase (NADH) activity","type":"related"},{"name":"lipoamide reductase activity","type":"related"},{"name":"lipoate dehydrogenase activity","type":"related"},{"name":"lipoic acid dehydrogenase activity","type":"related"},{"name":"lipoyl dehydrogenase activity","type":"related"},{"name":"protein-6-N-(dihydrolipoyl)lysine:NAD+ oxidoreductase","type":"related"},{"name":"protein-N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase","type":"related"}],"termid":"GO:0004148","terms_by_termid":{"GO:0004148":null}}


id: PBO:0070168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 82 pseudogene","termid":"PBO:0070168"}


id: PBO:0071106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 108","termid":"PBO:0071106"}


id: PBO:0059999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 19","termid":"PBO:0059999"}


id: PBO:0067794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 96","termid":"PBO:0067794"}


id: FYPO:0001464
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell phenotype observed in the vegetative growth phase of the life cycle in which the intracellular calcium ion (Ca2+) concentration briefly increases to a greater extent than normal immediately following an extracellular Ca2+ stimulus. Normally, the intracellular Ca2+ concentration increases to a peak in a \\\"burst\\\" within one minute, and then decreases to a new steady-state concentration.","definition_xrefs":["PomBase:mah","PMID:21811607"],"gene_count":0,"genotype_count":0,"name":"obsolete increased immediate intracellular calcium spike following extracellular calcium stimulus (obsolete FYPO:0001464)","synonyms":[{"name":"increased immediate intracellular calcium spike following extracellular calcium stimulus during mitotic cell cycle","type":"related"},{"name":"increased immediate intracellular calcium spike following extracellular calcium stimulus during vegetative growth","type":"exact"}],"termid":"FYPO:0001464"}


id: PATO:0001366
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"punctiform","termid":"PATO:0001366"}


id: GO:0032177
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Two separate septin rings that are formed from the septin collar at the time of cytokinesis in cells that divide by budding. These two rings are thought to delineate a special compartment in which factors involved in cytokinesis are concentrated.","definition_xrefs":["GOC:krc","PMID:16009555"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular bud neck septin structure","termid":"GO:0000399"},{"relation_name":"is_a","term_name":"cleavage apparatus septin structure","termid":"GO:0032161"},{"relation_name":"is_a","term_name":"split septin rings","termid":"GO:0032176"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005938","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"cellular bud neck split septin rings","termid":"GO:0032177"}


id: MONDO:0020191
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete eyebrow/eyelashes pigmentation anomaly (obsolete MONDO:0020191)","secondary_identifiers":["Orphanet:98601"],"termid":"MONDO:0020191","xrefs":{"Monarch":{"xref_id":"0020191"}}}


id: PBO:0070654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 25","termid":"PBO:0070654"}


id: GO:2000721
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any positive regulation of transcription from RNA polymerase II promoter that is involved in smooth muscle cell differentiation.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation (obsolete GO:2000721)","synonyms":[{"name":"activation of global transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"related"},{"name":"activation of transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"exact"},{"name":"activation of transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"exact"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter of nonstriated muscle cell differentiation","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter of smooth muscle cell differentiation","type":"related"},{"name":"positive regulation of transcription from Pol II promoter of nonstriated muscle cell differentiation","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter of smooth muscle cell differentiation","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter, global of nonstriated muscle cell differentiation","type":"related"},{"name":"positive regulation of transcription from RNA polymerase II promoter, global of smooth muscle cell differentiation","type":"related"},{"name":"stimulation of global transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"related"},{"name":"stimulation of global transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"related"},{"name":"stimulation of transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"exact"},{"name":"up regulation of global transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"exact"},{"name":"up-regulation of global transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"exact"},{"name":"upregulation of global transcription from RNA polymerase II promoter of nonstriated muscle cell differentiation","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter of smooth muscle cell differentiation","type":"exact"}],"termid":"GO:2000721"}


id: GO:0014829
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process, occurring in the vascular tissue, whereby actin/myosin complex activity generates force through ATP hydrolysis resulting in a change in smooth muscle geometry. This process is always coupled to chemo-mechanical energy conversion.","definition_xrefs":["MA:0002718","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smooth muscle contraction","termid":"GO:0006939"},{"relation_name":"is_a","term_name":"vasoconstriction","termid":"GO:0042310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vascular associated smooth muscle contraction","synonyms":[{"name":"vascular smooth muscle contraction","type":"exact"}],"termid":"GO:0014829"}


id: PBO:0088674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin-related substrate adaptor Rod1","termid":"PBO:0088674"}


id: GO:0046064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dCMP, deoxycytidine monophosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside monophosphate biosynthetic process","termid":"GO:0009177"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide biosynthetic process","termid":"GO:0009221"},{"relation_name":"is_a","term_name":"dCMP metabolic process","termid":"GO:0046063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"dCMP biosynthetic process","synonyms":[{"name":"dCMP anabolism","type":"exact"},{"name":"dCMP biosynthesis","type":"exact"},{"name":"dCMP formation","type":"exact"},{"name":"dCMP synthesis","type":"exact"}],"termid":"GO:0046064"}


id: GO:0086060
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a sodium ion by a voltage-gated channel through the plasma membrane of an AV node cardiac muscle cell contributing to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated sodium channel activity involved in cardiac muscle cell action potential","termid":"GO:0086006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"voltage-gated sodium channel activity involved in AV node cell action potential","synonyms":[{"name":"voltage-gated sodium channel activity involved in AV node cardiac muscle cell action potential","type":"exact"},{"name":"voltage-gated sodium channel activity involved in atrioventricular node cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0086060"}


id: GO:0042805
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to actinin, any member of a family of proteins that crosslink F-actin.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeletal protein binding","termid":"GO:0008092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0008092","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"actinin binding","secondary_identifiers":["GO:0051406"],"synonyms":[{"name":"beta-actinin binding","type":"narrow"},{"name":"capZ binding","type":"exact"}],"termid":"GO:0042805"}


id: MONDO:0016974
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An epithelial neoplasm arising from the thymus. It may be associated with myasthenia gravis, pure red cell aplasia, and hypogammaglobulinemia. It includes thymoma type B1 which is a thymoma of low grade malignant potential, thymoma type B2 which is a thymoma of moderate malignancy, and thymoma type B3 which is also known as well differentiated thymic carcinoma.","definition_xrefs":["NCIT:C7114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte disorder","termid":"MONDO:0004805"},{"relation_name":"is_a","term_name":"thymoma","termid":"MONDO:0006456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"thymoma type B","secondary_identifiers":["GARD:20893","DOID:3282","ICD10CM:D15.0","Orphanet:263317","UMLS:C1328042","MEDGEN:231253"],"synonyms":[{"name":"Dendritic cell thymoma","type":"exact"},{"name":"dendritic cell thymoma","type":"exact"},{"name":"dendritic cell thymoma (disease)","type":"exact"},{"name":"epithelioid thymoma","type":"exact"},{"name":"plump cell thymoma","type":"exact"},{"name":"primary thymic epithelial neoplasm type B","type":"exact"},{"name":"primary thymic epithelial tumor type B","type":"exact"},{"name":"primary thymic epithelial tumour type B","type":"exact"},{"name":"thymoma type B","type":"exact"}],"termid":"MONDO:0016974","xrefs":{"Monarch":{"xref_id":"0016974"}}}


id: MOD:00768
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Oxidation of methionine to methionine sulfone with neutral loss of CH3SO2H.","definition_xrefs":["PubMed:9004526","PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue with a secondary neutral loss","termid":"MOD:00431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine oxidation with neutral loss of 80 Da","termid":"MOD:00768"}


id: PR:O74791
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A guanine nucleotide-binding protein-like 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03930"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase grn1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC26H8.08c","secondary_identifiers":["UniProtKB:O74791"],"synonyms":[{"name":"GTPase in ribosomal export from the nucleolus protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GNL3","type":"exact"},{"name":"nuclear GTP-binding protein grn1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74791"}


id: PBO:0005064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTP-glucose-1-phosphate uridylyltransferase (predicted)","termid":"PBO:0005064"}


id: GO:0005951
data:
  {"annotated_genes":["SJAG_00392","SJAG_00412"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70013,106313],"is_not":false,"summary":null,"term":"GO:0005951"}]},"cv_name":"cellular_component","definition":"A protein complex that catalyzes the formation of carbamoyl phosphate; comprises a small subunit that binds and cleaves glutamine, and a large subunit that accepts the ammonia group cleaved from glutamine, binds all of the remaining substrates and effectors, and carries out all of the other catalytic events.","definition_xrefs":["PMID:8626695"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00392":null,"SJAG_00412":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"carbamoyl-phosphate synthase complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"arginine-specific carbamoyl phosphate synthetase complex","type":"narrow"},{"name":"carbamoyl phosphate synthase complex","type":"exact"},{"name":"carbamoyl-phosphate synthase arginine-specific complex","type":"narrow"}],"termid":"GO:0005951","terms_by_termid":{"GO:0005951":null}}


id: MONDO:0006027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A synovial sarcoma (disease) that involves the breast.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast sarcoma","termid":"MONDO:0002490"},{"relation_name":"is_a","term_name":"synovial sarcoma","termid":"MONDO:0010434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"breast synovial sarcoma","synonyms":[{"name":"breast synovial sarcoma (disease)","type":"exact"}],"termid":"MONDO:0006027","xrefs":{"Monarch":{"xref_id":"0006027"}}}


id: GO:1990875
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side of the nuclear pore complex (NPC) that faces the nucleoplasm.","definition_xrefs":["PMID:8422679"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nuclear pore","termid":"GO:0005643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005643"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634","GO:0005643"],"is_obsolete":false,"name":"nucleoplasmic side of nuclear pore","synonyms":[{"name":"nucleoplasmic side of NPC","type":"exact"},{"name":"nucleoplasmic side of nuclear pore complex","type":"exact"},{"name":"nucleoplasmic side of nucleopore","type":"exact"}],"termid":"GO:1990875"}


id: PBO:0064938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pancreatic polypeptide 2, pseudogene","termid":"PBO:0064938"}


id: PBO:0085217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication; any of several human homologs encoding DHHC-type zinc fingers (ZDHHC) can complement temperature sensitivity of yeast akr1 null mutant","termid":"PBO:0085217"}


id: PR:O13815
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC17H9.18c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13815"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 52 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.18c","synonyms":[{"name":"Spom972h-SPAC17H9.18c","type":"exact"}],"termid":"PR:O13815"}


id: MONDO:0007421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Deafness-ear malformation-facial palsy syndrome is characterized by profound conductive deafness due to stapedial abnormalities associated with variable malformations of the external ears and facial paralysis. It has been described in three sibs and their mother. Inheritance is autosomal dominant.","definition_xrefs":["Orphanet:3232"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deafness-ear malformation-facial palsy syndrome","secondary_identifiers":["MESH:C565123","UMLS:C1852292","OMIM:124490","GARD:1684","MEDGEN:338900","SCTID:716243005"],"synonyms":[{"name":"Sellars-Beighton syndrome","type":"exact"},{"name":"deafness, conductive stapedial, with EAR malformation and facial palsy","type":"related"}],"termid":"MONDO:0007421","xrefs":{"Monarch":{"xref_id":"0007421"}}}


id: GO:0050037
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-xylose + NADP+ = H+ + L-xylono-1,4-lactone + NADPH.","definition_xrefs":["RHEA:15789"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"L-xylose 1-dehydrogenase activity","secondary_identifiers":["EC:1.1.1.113","KEGG_REACTION:R03586","MetaCyc:L-XYLOSE-1-DEHYDROGENASE-RXN"],"synonyms":[{"name":"L-xylose dehydrogenase activity","type":"related"},{"name":"L-xylose:NADP+ 1-oxidoreductase activity","type":"related"},{"name":"NADPH-xylose reductase activity","type":"related"}],"termid":"GO:0050037"}


id: MONDO:0017249
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital pulmonary airway malformation","termid":"MONDO:0016580"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital pulmonary airway malformation type 1","secondary_identifiers":["UMLS:C5437763","GARD:21094","Orphanet:280832","icd11.foundation:1455719613","MEDGEN:1760964"],"synonyms":[{"name":"CCAM type 1","type":"exact"},{"name":"CPAM type 1","type":"exact"},{"name":"congenital cystic adenomatoid malformation of the lung type 1","type":"exact"},{"name":"congenital cystic adenomatous malformation of the lung type 1","type":"exact"},{"name":"congenital cystic disease of the lung type 1","type":"exact"}],"termid":"MONDO:0017249","xrefs":{"Monarch":{"xref_id":"0017249"}}}


id: PBO:0041985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCDC28A antisense RNA 1","termid":"PBO:0041985"}


id: MONDO:0018638
data:
  {"annotated_genes":["SJAG_04335"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86430],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013782"}]},"cv_name":"mondo","definition":"An inherited or acquired disorder of electrolyte metabolism, characterized by the inability of the renal tubules to respond to aldosterone. It is manifested by hyperkalemic metabolic acidosis, urinary salt wasting, normal or increased aldosterone secretion and normal glomerular filtration rate.","definition_xrefs":["NCIT:C85034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal tubular transport disease","termid":"MONDO:0006510"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04335":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"pseudohypoaldosteronism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:21861","MESH:D011546","UMLS:C0033805","ICD9:255.8","MEDGEN:18721","DOID:4479","NANDO:2200367","Orphanet:444916","NANDO:2100133","SCTID:77098009"],"termid":"MONDO:0018638","terms_by_termid":{"MONDO:0013782":null},"xrefs":{"Monarch":{"xref_id":"0018638"}}}


id: PBO:0087681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the mitochondrial (mt) i-AAA protease supercomplex; i-AAA degrades misfolded mitochondrial proteins; forms a subcomplex with Mgr3p that binds to substrates to facilitate proteolysis; required for growth of cells lacking mtDNA","termid":"PBO:0087681"}


id: SO:0000299
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A location where recombination or occurs during mitosis or meiosis.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_rearrangement_feature","termid":"SO:0000669"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"specific_recombination_site","synonyms":[{"name":"specific recombination site","type":"exact"}],"termid":"SO:0000299"}


id: PBO:0081672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 594","termid":"PBO:0081672"}


id: PBO:0090394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Urb2","termid":"PBO:0090394"}


id: PR:O94682
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mis20 gene.","definition_xrefs":["UniProtKB:O94682","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C776.16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.16","synonyms":[{"name":"Spom972h-mis20","type":"exact"}],"termid":"PR:O94682"}


id: MONDO:0006856
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm arising from mesothelial cells. Mesothelial cells are the lining cells of the pleura and peritoneum. -- 2003","definition_xrefs":["NCIT:C3786"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesothelial neoplasm","secondary_identifiers":["MESH:D018301","EFO:1001044","UMLS:C3714739","MEDGEN:811450","ICD10CM:C45-C49"],"synonyms":[{"name":"mesothelial neoplasm","type":"exact"},{"name":"mesothelial tumor","type":"exact"},{"name":"mesothelial tumour","type":"exact"}],"termid":"MONDO:0006856","xrefs":{"Monarch":{"xref_id":"0006856"}}}


id: GO:0005007
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a fibroblast growth factor receptor ligand and transmitting the signal across the plasma membrane to initiate a change in cell activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane receptor protein tyrosine kinase activity","termid":"GO:0004714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0004672"}],"interesting_parent_ids":["GO:0016301","GO:0004672","GO:0003674","GO:0140096","GO:0003824","GO:0038023","GO:0016740"],"is_obsolete":false,"name":"fibroblast growth factor receptor activity","synonyms":[{"name":"FGF receptor activity","type":"exact"},{"name":"FGF-activated receptor activity","type":"exact"},{"name":"FGFR","type":"exact"},{"name":"fibroblast growth factor-activated receptor activity","type":"exact"}],"termid":"GO:0005007"}


id: GO:0140525
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The pole of the kinetoplast associated with kinetoplast DNA replication. The antipodal sites flank the kinetoplast DNA disk and are positioned approximately 180 degrees apart. In Trypanosoma brucei and Crithidia fasciculata, minicircles are attached at antipodal sites and they contain enzymes that catalyse some of the later reactions in minicircle replication.","definition_xrefs":["PMID:12455998","PMID:17462016","PMID:8045928"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinetoplast","termid":"GO:0020023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005739","GO:0005575"],"is_obsolete":false,"name":"antipodal site","synonyms":[{"name":"antipodal zone","type":"exact"}],"termid":"GO:0140525"}


id: PBO:0024846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Smc5-6 complex SMC P-loop ATPase subunit Smc5","termid":"PBO:0024846"}


id: GO:0004966
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with galanin to initiate a change in cell activity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor activity","termid":"GO:0008188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"galanin receptor activity","termid":"GO:0004966"}


id: GO:0070668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of mast cell proliferation.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte proliferation","termid":"GO:0070665"},{"relation_name":"is_a","term_name":"regulation of mast cell proliferation","termid":"GO:0070666"},{"relation_name":"positively_regulates","term_name":"mast cell proliferation","termid":"GO:0070662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mast cell proliferation","synonyms":[{"name":"activation of mast cell proliferation","type":"narrow"},{"name":"stimulation of mast cell proliferation","type":"narrow"},{"name":"up regulation of mast cell proliferation","type":"exact"},{"name":"up-regulation of mast cell proliferation","type":"exact"},{"name":"upregulation of mast cell proliferation","type":"exact"}],"termid":"GO:0070668"}


id: PBO:0050675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 8 pseudogene 2","termid":"PBO:0050675"}


id: GO:0008413
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 8-oxo-7,8-dihydroguanosine triphosphate (8-oxo-GTP) + H2O = 8-oxo-7,8-dihydroguanosine diphosphate (8-oxo-GDP) + phosphate. 8-oxo-7,8-dihydroguanosine triphosphate (8-oxo-GTP) is the oxidised form of the free guanine nucleotide and can act as a potent mutagenic substrate for transcription.","definition_xrefs":["RHEA:60032","PMID:15878881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate diphosphatase activity","termid":"GO:0047429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0047429"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0047429","GO:0016787"],"is_obsolete":false,"name":"8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity","secondary_identifiers":["EC:3.6.1.69"],"synonyms":[{"name":"7,8-dihydro-8-oxoguanine-triphosphatase activity","type":"exact"},{"name":"8-oxo-7,8-dihydroguanine triphosphatase activity","type":"exact"},{"name":"8-oxo-7,8-dihydroguanosine triphosphatase activity","type":"exact"},{"name":"8-oxo-GTPase activity","type":"exact"}],"termid":"GO:0008413"}


id: PBO:0060620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCK adaptor protein 1","termid":"PBO:0060620"}


id: RO:0002558
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of is evidence for","direct_ancestors":[{"relation_name":"is_a","term_name":"related_via_evidence_or_inference_to","termid":"RO:0002616"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_evidence","termid":"RO:0002558"}


id: MOD:01499
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with the Applied Biosystems iTRAQ4plex-116 reporter+balance group.","definition_xrefs":["Unimod:214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(13)C isotope tagged reagent","termid":"MOD:01428"},{"relation_name":"is_a","term_name":"(15)N isotope tagged reagent","termid":"MOD:01429"},{"relation_name":"is_a","term_name":"modifications with monoisotopic mass differences that are nominally equal at 144.102062 Da","termid":"MOD:01517"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent acylated residue","termid":"MOD:01518"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ4plex-116 reporter+balance reagent acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 116 & 117","type":"related"},{"name":"iTRAQ","type":"related"},{"name":"iTRAQ4plex","type":"related"}],"termid":"MOD:01499"}


id: GO:0042414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine.","definition_xrefs":["ISBN:0192801023","GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catecholamine metabolic process","termid":"GO:0006584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epinephrine metabolic process","synonyms":[{"name":"adrenaline metabolic process","type":"exact"},{"name":"adrenaline metabolism","type":"exact"},{"name":"epinephrine metabolism","type":"exact"}],"termid":"GO:0042414"}


id: GO:0031643
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the formation of a myelin sheath around nerve axons.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myelination","termid":"GO:0031641"},{"relation_name":"is_a","term_name":"positive regulation of nervous system process","termid":"GO:0031646"},{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"positively_regulates","term_name":"myelination","termid":"GO:0042552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myelination","synonyms":[{"name":"activation of myelination","type":"narrow"},{"name":"stimulation of myelination","type":"narrow"},{"name":"up regulation of myelination","type":"exact"},{"name":"up-regulation of myelination","type":"exact"},{"name":"upregulation of myelination","type":"exact"}],"termid":"GO:0031643"}


id: PBO:0053522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 517","termid":"PBO:0053522"}


id: FYPO:0000627
data:
  {"alleles_by_uniquename":{"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_01143:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"711-723","gene_uniquename":"SJAG_01143","name":"mid1-delta(711-723 a.a.)","uniquename":"SJAG_01143:allele-2"},"SJAG_01355:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01355","name":"cox6delta","uniquename":"SJAG_01355:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"},"SJAG_04883:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04883","name":"ptp4delta","uniquename":"SJAG_04883:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[119398,119397],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006989"}],"single_locus_phenotype":[{"annotations":[119390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006989"},{"annotations":[118953],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001007"},{"annotations":[119025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000644"},{"annotations":[119103,119100],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000579"},{"annotations":[119099,119102],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000590"},{"annotations":[119388],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000596"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a specific cellular process is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process phenotype","termid":"FYPO:0000114"},{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00601":null,"SJAG_01143":null,"SJAG_01355":null,"SJAG_02621":null,"SJAG_03118":null,"SJAG_03689":null,"SJAG_04883":null},"genotype_count":7,"genotypes_by_uniquename":{"ago1delta__leo1delta":{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"cox6delta":{"display_name":"cox6delta","display_uniquename":"cox6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01355:allele-1","expression":"Null"}]}]},"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},"dcr1delta__leo1delta":{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"mid1-delta(711-723 a.a.)(aa)","display_uniquename":"mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-2","expression":"Not assayed or wild type"}]}]},"ptp4delta":{"display_name":"ptp4delta","display_uniquename":"ptp4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04883:allele-1","expression":"Null"}]}]},"rip1delta":{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_03118","SJAG_02621","SJAG_03689"],"name":"normal cellular process","references_by_uniquename":{"PMID:25866389":null,"PMID:35226668":null,"PMID:36695178":null,"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_01355","SJAG_03689","SJAG_04883","SJAG_00601","SJAG_01143"],"single_locus_genotype_uniquenames":["dcr1delta","cox6delta","mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","rip1delta","ptp4delta"],"termid":"FYPO:0000627","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0000579":null,"FYPO:0000590":null,"FYPO:0000596":null,"FYPO:0000644":null,"FYPO:0001007":null,"FYPO:0006989":null,"FYPO_EXT:0000001":null}}


id: PBO:0072924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 5","termid":"PBO:0072924"}


id: GO:0072157
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of epithelial cells within a renal tubule that contributes to distal tubule morphogenesis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration involved in nephron tubule morphogenesis","termid":"GO:0072155"},{"relation_name":"part_of","term_name":"distal tubule morphogenesis","termid":"GO:0072156"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell migration involved in distal tubule morphogenesis","termid":"GO:0072157"}


id: GO:0048167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that modulates synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers.","definition_xrefs":["PMID:11891290","GOC:tb","GOC:jid","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"},{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of synaptic plasticity","termid":"GO:0048167"}


id: PBO:0072392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 18","termid":"PBO:0072392"}


id: MONDO:0021513
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that involves the tonsil.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system benign neoplasm","termid":"MONDO:0000382"},{"relation_name":"is_a","term_name":"tonsil neoplasm","termid":"MONDO:0021250"},{"relation_name":"is_a","term_name":"benign neoplasm of pharynx","termid":"MONDO:0021523"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"benign neoplasm of tonsil","secondary_identifiers":["UMLS:C0153936","NCIT:C3594","MEDGEN:57804","SCTID:92263001","ICD10CM:D10.4","icd11.foundation:2132438112","ICD9:210.5"],"synonyms":[{"name":"benign neoplasm of the tonsil","type":"exact"},{"name":"benign tonsil neoplasm","type":"exact"},{"name":"benign tonsil tumor","type":"exact"},{"name":"benign tonsil tumour","type":"exact"},{"name":"benign tonsillar neoplasm","type":"exact"},{"name":"benign tonsillar tumor","type":"exact"},{"name":"benign tonsillar tumour","type":"exact"},{"name":"benign tumor of the tonsil","type":"exact"},{"name":"benign tumor of tonsil","type":"exact"},{"name":"benign tumour of the tonsil","type":"exact"},{"name":"benign tumour of tonsil","type":"exact"},{"name":"tonsil benign neoplasm","type":"exact"},{"name":"tonsillar neoplasm, benign","type":"exact"}],"termid":"MONDO:0021513","xrefs":{"Monarch":{"xref_id":"0021513"}}}


id: FYPO:0003033
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell when the cell is subject to glucose starvation is higher than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level","termid":"FYPO:0001890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased RNA level during glucose starvation","synonyms":[{"name":"increased RNA accumulation during glucose starvation","type":"related"},{"name":"increased RNA level during glucose depletion","type":"exact"},{"name":"increased RNA level during glucose deprivation","type":"exact"},{"name":"increased RNA level during glucose limitation","type":"related"},{"name":"increased transcript level during glucose starvation","type":"exact"}],"termid":"FYPO:0003033"}


id: PBO:0005384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chk1 protein kinase","termid":"PBO:0005384"}


id: PBO:0065685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTTG1IP family member 2","termid":"PBO:0065685"}


id: RO:0002610
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship that holds between two entities, where the entities exhibit a statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes.","direct_ancestors":[{"relation_name":"is_a","term_name":"related_via_dependence_to","termid":"RO:0002609"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"correlated_with","termid":"RO:0002610"}


id: MONDO:1012096
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hemolytic anemia, non-human animal","termid":"MONDO:1011689"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemolytic anemia, cattle","secondary_identifiers":["OMIA:000430-9913"],"termid":"MONDO:1012096","xrefs":{"Monarch":{"xref_id":"1012096"}}}


id: GO:0034696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin F stimulus.","definition_xrefs":["GOC:BHF","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to prostaglandin","termid":"GO:0034694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to prostaglandin F","synonyms":[{"name":"response to prostaglandin F stimulus","type":"exact"}],"termid":"GO:0034696"}


id: PBO:0072579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RRN3 pseudogene 2","termid":"PBO:0072579"}


id: PBO:0005471
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"localizes to double-strand breaks","termid":"PBO:0005471"}


id: MONDO:0006729
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type of constriction that is caused by the presence of a fibrous ring (discrete type) below the aortic valve, anywhere between the aortic valve and the mitral valve. It is characterized by restricted outflow from the left ventricle into the aorta.","definition_xrefs":["MESH:D021922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subvalvular aortic stenosis","termid":"MONDO:0006987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"discrete subaortic stenosis","secondary_identifiers":["DOID:5804","MEDGEN:3867","UMLS:C0012628"],"termid":"MONDO:0006729","xrefs":{"Monarch":{"xref_id":"0006729"}}}


id: GO:0008776
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + acetate = ADP + acetyl phosphate.","definition_xrefs":["EC:2.7.2.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, carboxyl group as acceptor","termid":"GO:0016774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016301","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"acetate kinase activity","secondary_identifiers":["RHEA:11352","MetaCyc:ACETATEKIN-RXN"],"synonyms":[{"name":"AK activity","type":"related"},{"name":"ATP:acetate phosphotransferase activity","type":"related"},{"name":"AckA","type":"related"},{"name":"acetate kinase (phosphorylating) activity","type":"related"},{"name":"acetic kinase activity","type":"related"},{"name":"acetokinase activity","type":"related"}],"termid":"GO:0008776"}


id: GO:1990262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of anti-Mullerian hormone to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription. Upon ligand binding, the receptor  forms a complex consisting of two type II and two type I transmembrane serine/threonine kinases. Type II receptors phosphorylate and activate type I receptors which autophosphorylate, then bind and activate SMAD transcriptional regulators.","definition_xrefs":["GOC:hjd","PMID:23624077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein serine/threonine kinase signaling pathway","termid":"GO:0007178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"anti-Mullerian hormone receptor signaling pathway","synonyms":[{"name":"anti-Mullerian hormone signaling pathway","type":"exact"}],"termid":"GO:1990262"}


id: PBO:0053329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 160","termid":"PBO:0053329"}


id: PBO:0004327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-ATPase delta subunit (predicted)","termid":"PBO:0004327"}


id: MONDO:0014778
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lamb-Shaffer syndrome","secondary_identifiers":["OMIM:616803","Orphanet:530983","UMLS:C4225202","GARD:22211","MEDGEN:903542"],"synonyms":[{"name":"LAMSHF","type":"exact"},{"name":"Lamb-Shaffer syndrome","type":"exact"},{"name":"Lamb-Shaffer syndrome; LAMSHF","type":"exact"}],"termid":"MONDO:0014778","xrefs":{"Monarch":{"xref_id":"0014778"}}}


id: PR:O94580
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- udp7 gene.","definition_xrefs":["UniProtKB:O94580","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1442.07c","synonyms":[{"name":"Spom972h-udp7","type":"exact"}],"termid":"PR:O94580"}


id: PBO:0011067
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved in bacteria","termid":"PBO:0011067"}


id: FYPO:0006153
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which DNA binding at a STREP motif by a gene product does not occur, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished DNA binding","termid":"FYPO:0000659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000653","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"abolished DNA binding at STREP motif","synonyms":[{"name":"DNA binding at STREP motif abolished","type":"exact"},{"name":"STREP motif binding abolished","type":"exact"},{"name":"abolished DNA binding at stress-starvation response element of Schizosaccharomyces pombe","type":"exact"}],"termid":"FYPO:0006153"}


id: GO:0160197
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a di-trans,poly-cis-dolichal+ H+ + NAD(P)+ = a di-trans,poly-cis-dolichal + NAD(P)H.","definition_xrefs":["PMID:38821050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"dolichal reductase [NAD(P)+] activity","termid":"GO:0160197"}


id: FYPO:0001203
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype that reflects increased occurrence of coflocculation. In coflocculation, yeast cells coaggregate with cells of another species, usually bacteria.","definition_xrefs":["PMID:11472912","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased flocculation","termid":"FYPO:0000155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"coflocculating cells","synonyms":[{"name":"co-flocculating cells","type":"exact"},{"name":"increased coflocculation","type":"exact"}],"termid":"FYPO:0001203"}


id: GO:1905022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of threonine-tRNA ligase activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","PMID:8049265"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of threonine-tRNA ligase activity (obsolete GO:1905022)","synonyms":[{"name":"down regulation of L-threonine:tRNAThr ligase (AMP-forming)","type":"exact"},{"name":"down regulation of TRS","type":"related"},{"name":"down regulation of threonine translase activity","type":"exact"},{"name":"down regulation of threonine-tRNA ligase activity","type":"exact"},{"name":"down regulation of threonine-transfer ribonucleate synthetase activity","type":"exact"},{"name":"down regulation of threonyl ribonucleic synthetase activity","type":"exact"},{"name":"down regulation of threonyl-tRNA synthetase activity","type":"exact"},{"name":"down regulation of threonyl-transfer RNA synthetase activity","type":"exact"},{"name":"down regulation of threonyl-transfer ribonucleate synthetase activity","type":"exact"},{"name":"down regulation of threonyl-transfer ribonucleic acid synthetase activity","type":"exact"},{"name":"down-regulation of L-threonine:tRNAThr ligase (AMP-forming)","type":"exact"},{"name":"down-regulation of TRS","type":"related"},{"name":"down-regulation of threonine translase activity","type":"exact"},{"name":"down-regulation of threonine-tRNA ligase activity","type":"exact"},{"name":"down-regulation of threonine-transfer ribonucleate synthetase activity","type":"exact"},{"name":"down-regulation of threonyl ribonucleic synthetase activity","type":"exact"},{"name":"down-regulation of threonyl-tRNA synthetase activity","type":"exact"},{"name":"down-regulation of threonyl-transfer RNA synthetase activity","type":"exact"},{"name":"down-regulation of threonyl-transfer ribonucleate synthetase activity","type":"exact"},{"name":"down-regulation of threonyl-transfer ribonucleic acid synthetase activity","type":"exact"},{"name":"downregulation of L-threonine:tRNAThr ligase (AMP-forming)","type":"exact"},{"name":"downregulation of TRS","type":"related"},{"name":"downregulation of threonine translase activity","type":"exact"},{"name":"downregulation of threonine-tRNA ligase activity","type":"exact"},{"name":"downregulation of threonine-transfer ribonucleate synthetase activity","type":"exact"},{"name":"downregulation of threonyl ribonucleic synthetase activity","type":"exact"},{"name":"downregulation of threonyl-tRNA synthetase activity","type":"exact"},{"name":"downregulation of threonyl-transfer RNA synthetase activity","type":"exact"},{"name":"downregulation of threonyl-transfer ribonucleate synthetase activity","type":"exact"},{"name":"downregulation of threonyl-transfer ribonucleic acid synthetase activity","type":"exact"},{"name":"inhibition of L-threonine:tRNAThr ligase (AMP-forming)","type":"narrow"},{"name":"inhibition of TRS","type":"related"},{"name":"inhibition of threonine translase activity","type":"narrow"},{"name":"inhibition of threonine-tRNA ligase activity","type":"narrow"},{"name":"inhibition of threonine-transfer ribonucleate synthetase activity","type":"narrow"},{"name":"inhibition of threonyl ribonucleic synthetase activity","type":"narrow"},{"name":"inhibition of threonyl-tRNA synthetase activity","type":"narrow"},{"name":"inhibition of threonyl-transfer RNA synthetase activity","type":"narrow"},{"name":"inhibition of threonyl-transfer ribonucleate synthetase activity","type":"narrow"},{"name":"inhibition of threonyl-transfer ribonucleic acid synthetase activity","type":"narrow"},{"name":"negative regulation of L-threonine:tRNAThr ligase (AMP-forming)","type":"exact"},{"name":"negative regulation of TRS","type":"related"},{"name":"negative regulation of threonine translase activity","type":"exact"},{"name":"negative regulation of threonine-transfer ribonucleate synthetase activity","type":"exact"},{"name":"negative regulation of threonyl ribonucleic synthetase activity","type":"exact"},{"name":"negative regulation of threonyl-tRNA synthetase activity","type":"exact"},{"name":"negative regulation of threonyl-transfer RNA synthetase activity","type":"exact"},{"name":"negative regulation of threonyl-transfer ribonucleate synthetase activity","type":"exact"},{"name":"negative regulation of threonyl-transfer ribonucleic acid synthetase activity","type":"exact"}],"termid":"GO:1905022"}


id: FYECO:0000151
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which manganese ions were added to the assay buffer in excess compared to standard assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ ions","termid":"FYECO:0000030"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ Mn ions","synonyms":[{"name":"Mn2+ added","type":"related"},{"name":"manganese ions added","type":"exact"}],"termid":"FYECO:0000151"}


id: PBO:0049337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTF2H2 family member C, copy 2","termid":"PBO:0049337"}


id: GO:0019254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving carnitine, where metabolism is linked to CoA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carnitine metabolic process","termid":"GO:0009437"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carnitine metabolic process, CoA-linked","secondary_identifiers":["MetaCyc:CARNMET-PWY"],"synonyms":[{"name":"carnitine metabolism, CoA-linked","type":"exact"}],"termid":"GO:0019254"}


id: PBO:0051948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol-trisphosphate 3-kinase B","termid":"PBO:0051948"}


id: PBO:0028968
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_superoxide_dismutase_activity","termid":"PBO:0028968"}


id: PBO:0051533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 3 receptor subunit alpha","termid":"PBO:0051533"}


id: GO:0043651
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving linoleic acid, an unsaturated omega-6 fatty acid that has the molecular formula C18H32O2.","definition_xrefs":["Wikipedia:Linoleic_Acid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid metabolic process","termid":"GO:0001676"},{"relation_name":"is_a","term_name":"unsaturated fatty acid metabolic process","termid":"GO:0033559"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"linoleic acid metabolic process","secondary_identifiers":["Reactome:R-HSA-2046105","Wikipedia:Linoleic_acid"],"synonyms":[{"name":"linoleic acid metabolism","type":"exact"}],"termid":"GO:0043651"}


id: MONDO:0018469
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lung disorder","termid":"MONDO:0005275"},{"relation_name":"is_a","term_name":"mycobacterial infectious disease","termid":"MONDO:0020590"},{"relation_name":"is_a","term_name":"respiratory tract infectious disorder","termid":"MONDO:0024355"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pulmonary non-tuberculous mycobacterial infection","secondary_identifiers":["NORD:1887","MEDGEN:758704","Orphanet:411703","UMLS:C3472679","GARD:12829","icd11.foundation:1798822437"],"synonyms":[{"name":"Nontuberculous Mycobacterial Lung Disease","type":"exact"},{"name":"non-tuberculous mycobacterial lung disease","type":"exact"},{"name":"nontuberculous mycobacterial lung disease","type":"related"}],"termid":"MONDO:0018469","xrefs":{"Monarch":{"xref_id":"0018469"}}}


id: PBO:0054084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1435","termid":"PBO:0054084"}


id: GO:0010024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phytochromobilin, which involves the oxidative cleavage of heme by a heme oxygenase(HO) to form biliverdin IX alpha.","definition_xrefs":["PMID:11402195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetrapyrrole biosynthetic process","termid":"GO:0033014"},{"relation_name":"is_a","term_name":"dicarboxylic acid biosynthetic process","termid":"GO:0043650"},{"relation_name":"is_a","term_name":"phytochromobilin metabolic process","termid":"GO:0051202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0033013"],"is_obsolete":false,"name":"phytochromobilin biosynthetic process","synonyms":[{"name":"phytochromobilin anabolism","type":"exact"},{"name":"phytochromobilin biosynthesis","type":"exact"},{"name":"phytochromobilin formation","type":"exact"},{"name":"phytochromobilin synthesis","type":"exact"}],"termid":"GO:0010024"}


id: PBO:0062229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily B member 2","termid":"PBO:0062229"}


id: MONDO:0021631
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A astrocytoma (excluding glioblastoma) that involves the brain.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"astrocytoma (excluding glioblastoma)","termid":"MONDO:0019781"},{"relation_name":"is_a","term_name":"primary brain neoplasm","termid":"MONDO:0021632"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain astrocytoma","secondary_identifiers":["SCTID:254938000","NCIT:C60780","UMLS:C3695127","MEDGEN:811330"],"synonyms":[{"name":"astrocytoma (excluding glioblastoma) of brain","type":"exact"},{"name":"brain astrocytoma","type":"exact"},{"name":"brain astrocytoma (excluding glioblastoma)","type":"exact"}],"termid":"MONDO:0021631","xrefs":{"Monarch":{"xref_id":"0021631"}}}


id: PBO:0048781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit alpha 12","termid":"PBO:0048781"}


id: PR:O14018
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine--tRNA ligase, cytoplasmic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02129","PANTHER:PTHR11778:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29A4.15","secondary_identifiers":["UniProtKB:O14018"],"synonyms":[{"name":"SerRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SARS","type":"exact"},{"name":"seryl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"seryl-tRNA(Ser/Sec) synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14018"}


id: MONDO:0013227
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital plasminogen activator inhibitor type 1 (PAI-1) deficiency is a rare genetic bleeding disorder characterized by premature lysis of hemostatic clots and a moderate bleeding tendency.","definition_xrefs":["Orphanet:465"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coagulation protein disease","termid":"MONDO:0002242"},{"relation_name":"is_a","term_name":"hemorrhagic disease","termid":"MONDO:0002243"},{"relation_name":"is_a","term_name":"congenital hematological disorder","termid":"MONDO:0009332"},{"relation_name":"is_a","term_name":"inherited blood coagulation disorder","termid":"MONDO:0021181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"congenital plasminogen activator inhibitor type 1 deficiency","secondary_identifiers":["GARD:4381","NCIT:C133884","OMIM:613329","MEDGEN:412870","icd11.foundation:428643962","NANDO:2200688","MESH:C567640","UMLS:C2750067","SCTID:717407006"],"synonyms":[{"name":"congenital PAI-1 deficiency","type":"exact"},{"name":"congenital plasminogen activator inhibitor type 1 deficiency","type":"exact"},{"name":"hyperfibrinolysis due to Pai1 deficiency","type":"related"},{"name":"plasminogen activator INHIBITOR-1 deficiency","type":"related"},{"name":"plasminogen activator inhibitor type 1 deficiency","type":"related"}],"termid":"MONDO:0013227","xrefs":{"Monarch":{"xref_id":"0013227"}}}


id: PBO:0024834
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta Glucan Synthase","termid":"PBO:0024834"}


id: GO:0002812
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of an antibacterial peptide with activity against Gram-negative bacteria.","definition_xrefs":["GOC:add","PMID:11807545"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antibacterial peptide biosynthetic process","termid":"GO:0002780"},{"relation_name":"part_of","term_name":"defense response to Gram-negative bacterium","termid":"GO:0050829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"biosynthetic process of antibacterial peptides active against Gram-negative bacteria","termid":"GO:0002812"}


id: MONDO:0018015
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"rheumatic disorder","termid":"MONDO:0005554"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intermittent hydrarthrosis","secondary_identifiers":["Orphanet:329967","ICD10CM:M12.4","MEDGEN:508453","SCTID:711286009","UMLS:C0149910","GARD:21499","icd11.foundation:1855039383"],"termid":"MONDO:0018015","xrefs":{"Monarch":{"xref_id":"0018015"}}}


id: PBO:0091121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial glutamyl-tRNA amidotransferase complex subunit Gta3","termid":"PBO:0091121"}


id: PR:O14248
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tea3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14248"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tip elongation aberrant protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6G10.02c","synonyms":[{"name":"Spom972h-tea3","type":"exact"},{"name":"cell polarity protein tea3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14248"}


id: CHEBI:27365
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc ion","termid":"CHEBI:27365"}


id: PBO:0057392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548e","termid":"PBO:0057392"}


id: GO:0099159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of modification of postsynaptic structure.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of modification of synaptic structure","termid":"GO:1905244"},{"relation_name":"regulates","term_name":"modification of postsynaptic structure","termid":"GO:0099010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of modification of postsynaptic structure","synonyms":[{"name":"regulation of postsynapse remodelling","type":"exact"}],"termid":"GO:0099159"}


id: PATO:0002466
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keyhole shaped","termid":"PATO:0002466"}


id: PBO:0062847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteocrin","termid":"PBO:0062847"}


id: PBO:0054378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1774","termid":"PBO:0054378"}


id: MONDO:0012982
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Episodic ataxia type 6 (EA6) is an exceedingly rare form of hereditary episodic ataxia with varying degrees of ataxia and associated findings including slurred speech, headache, confusion and hemiplegia.","definition_xrefs":["Orphanet:209967"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary episodic ataxia","termid":"MONDO:0016227"},{"relation_name":"is_a","term_name":"inborn disorder of amino acid transport","termid":"MONDO:0019216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"episodic ataxia type 6","secondary_identifiers":["GARD:17107","MESH:C567207","OMIM:612656","UMLS:C2675211","MEDGEN:390739","DOID:0050994","icd11.foundation:1493336901","SCTID:718753002"],"synonyms":[{"name":"EA6","type":"related"},{"name":"SLC1A3 hereditary episodic ataxia","type":"exact"},{"name":"episodic ataxia type 6","type":"exact"},{"name":"episodic ataxia, type 6","type":"related"},{"name":"hereditary episodic ataxia caused by mutation in SLC1A3","type":"exact"}],"termid":"MONDO:0012982","xrefs":{"Monarch":{"xref_id":"0012982"}}}


id: PBO:0069016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 260, pseudogene","termid":"PBO:0069016"}


id: PBO:0042724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENPB DNA-binding domains containing 2, pseudogene","termid":"PBO:0042724"}


id: MONDO:0005862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. An acquired disorder characterized by recurrent symptoms, referable to multiple organ systems, occurring in response to demonstrable exposure to many chemically unrelated compounds at doses below those established in the general population to cause harmful effects. (Cullen mr. The worker with multiple chemical sensitivities: an overview. Occup Med 1987;2(4):655-61)","definition_xrefs":["MESH:D018777"],"gene_count":0,"genotype_count":0,"name":"obsolete multiple chemical sensitivity (obsolete MONDO:0005862)","secondary_identifiers":["SCTID:702772003","DOID:4661"],"synonyms":[{"name":"20th century disease","type":"related"},{"name":"chemical AIDS","type":"related"},{"name":"environmental illness","type":"related"},{"name":"idiopathic environmental illness","type":"exact"},{"name":"total allergy syndrome","type":"exact"}],"termid":"MONDO:0005862","xrefs":{"Monarch":{"xref_id":"0005862"}}}


id: GO:2000539
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein geranylgeranylation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macromolecule biosynthetic process","termid":"GO:0010556"},{"relation_name":"is_a","term_name":"regulation of protein modification process","termid":"GO:0031399"},{"relation_name":"regulates","term_name":"protein geranylgeranylation","termid":"GO:0018344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein geranylgeranylation","synonyms":[{"name":"regulation of C-terminal protein geranylgeranylation","type":"related"},{"name":"regulation of protein amino acid geranylgeranylation","type":"exact"}],"termid":"GO:2000539"}


id: GO:0006544
data:
  {"annotated_genes":["SJAG_02901","SJAG_03861","SJAG_03914","SJAG_03290","SJAG_02450","SJAG_01766","SJAG_01271","SJAG_03641"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71689],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006545"},{"annotations":[71662,73085],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019264"},{"annotations":[97639],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006546"},{"annotations":[87171,96169,77699,73936],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019464"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving glycine, aminoethanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine family amino acid metabolic process","termid":"GO:0009069"},{"relation_name":"is_a","term_name":"proteinogenic amino acid metabolic process","termid":"GO:0170039"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01271":null,"SJAG_01766":null,"SJAG_02450":null,"SJAG_02901":null,"SJAG_03290":null,"SJAG_03641":null,"SJAG_03861":null,"SJAG_03914":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"glycine metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"glycine metabolism","type":"exact"}],"termid":"GO:0006544","terms_by_termid":{"GO:0006545":null,"GO:0006546":null,"GO:0019264":null,"GO:0019464":null}}


id: MONDO:0015273
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Complete atrioventricular canal (CAVC), also referred to as complete atrioventricular septal defect, is characterized by an ostium primum atrial septal defect, a common atrioventricular valve and a variable deficiency of the ventricular septum inflow.","definition_xrefs":["Orphanet:1329"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial atrioventricular septal defect","termid":"MONDO:0020290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"complete atrioventricular canal","secondary_identifiers":["UMLS:C0221215","ICD9:745.69","MEDGEN:65132","GARD:1454","MESH:C535974","NANDO:2100086","NANDO:2200269","SCTID:360481003"],"synonyms":[{"name":"CAVC","type":"exact"},{"name":"complete atrioventricular septal defect","type":"exact"}],"termid":"MONDO:0015273","xrefs":{"Monarch":{"xref_id":"0015273"}}}


id: PBO:0047627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FOXO induced long non-coding RNA 1","termid":"PBO:0047627"}


id: SO:0000849
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A component of the three-prime long terminal repeat.","definition_xrefs":["PMID:8649407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"LTR_component","termid":"SO:0000848"},{"relation_name":"part_of","term_name":"three_prime_LTR","termid":"SO:0000426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_LTR_component","synonyms":[{"name":"3' long terminal repeat component","type":"exact"},{"name":"three prime LTR component","type":"exact"}],"termid":"SO:0000849"}


id: PBO:0090406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATOR2-SEACAT complex/COPII-coated vesicle component/nuclear pore outer ring WD repeat protein Sec13","termid":"PBO:0090406"}


id: GO:0140220
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane-bound intracellular compartment that is formed upon internalization of a pathogen into a host cell, and in which the pathogen resides.","definition_xrefs":["PMID:26842840","PMID:10560000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"pathogen-containing vacuole","synonyms":[{"name":"pathogen inclusion","type":"related"},{"name":"pathogen-containing compartment","type":"related"}],"termid":"GO:0140220"}


id: PBO:0048958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycoprotein Ib platelet subunit beta","termid":"PBO:0048958"}


id: PBO:0080814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-ray repair cross complementing 6 pseudogene 4","termid":"PBO:0080814"}


id: PBO:0072958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCEL antisense RNA 1","termid":"PBO:0072958"}


id: PBO:0056321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP3K5 antisense RNA 1","termid":"PBO:0056321"}


id: PBO:0075443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spartin","termid":"PBO:0075443"}


id: GO:0052613
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: canthaxanthin + a reduced electron acceptor + oxygen = adonirubin + an oxidized electron acceptor + H2O.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete canthaxanthin 3-hydroxylase activity (obsolete GO:0052613)","synonyms":[{"name":"beta-carotene hydroxylase activity","type":"broad"},{"name":"carotene beta-ring hydroxylase activity","type":"broad"}],"termid":"GO:0052613"}


id: GO:0046052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of UTP, uridine (5'-)triphosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside triphosphate catabolic process","termid":"GO:0009210"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide catabolic process","termid":"GO:0009222"},{"relation_name":"is_a","term_name":"UTP metabolic process","termid":"GO:0046051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"UTP catabolic process","synonyms":[{"name":"UTP breakdown","type":"exact"},{"name":"UTP catabolism","type":"exact"},{"name":"UTP degradation","type":"exact"},{"name":"UTP hydrolysis","type":"exact"}],"termid":"GO:0046052"}


id: GO:1900862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cordyol C biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"negative regulation of secondary metabolite biosynthetic process","termid":"GO:1900377"},{"relation_name":"is_a","term_name":"regulation of cordyol C biosynthetic process","termid":"GO:1900861"},{"relation_name":"negatively_regulates","term_name":"cordyol C biosynthetic process","termid":"GO:1900799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"negative regulation of cordyol C biosynthetic process","synonyms":[{"name":"down regulation of cordyol C biosynthetic process","type":"exact"},{"name":"down-regulation of cordyol C biosynthetic process","type":"exact"},{"name":"downregulation of cordyol C biosynthetic process","type":"exact"}],"termid":"GO:1900862"}


id: GO:0061465
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The part of the plasma membrane that contributes to the structure of a hemidesmosome.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete plasma membrane part of hemidesmosome (obsolete GO:0061465)","termid":"GO:0061465"}


id: GO:0034569
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: monodemethylisoproturon + H2O = hydroxymonodemethylisoproturon + 2 H+ + 2 e-.","definition_xrefs":["UM-BBD_reactionID:r0893"],"gene_count":0,"genotype_count":0,"name":"obsolete monodemethylisoproturon dehydrogenase activity (obsolete GO:0034569)","termid":"GO:0034569"}


id: PBO:0053030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal protein transmembrane 4 beta pseudogene 1","termid":"PBO:0053030"}


id: MONDO:0019159
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Loeffler's endocarditis is a rare restrictive cardiomyopathy characterized by hypereosinophilia and fibrous thickening of the endocardium, with usually large thrombi against the ventricle walls, that can lead to cardiovascular complications such as heart failure and thromboembolism. It manifests with symptoms like edema, fatigue and shortness of breath. It is usually secondary to eosinophil-associated tissue damage and is associated with idiopathic hypereosinophilic syndrome, chronic eosinophilic leukemia, carcinoma, or lymphoma.","definition_xrefs":["Orphanet:75566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-familial restrictive cardiomyopathy","termid":"MONDO:0016345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Loeffler endocarditis","secondary_identifiers":["MEDGEN:104788","UMLS:C0206143","icd11.foundation:1223390562","DOID:396","MedDRA:10052841","SCTID:449829009","GARD:18929","NCIT:C27044"],"synonyms":[{"name":"eosinophilic endocarditis","type":"exact"},{"name":"eosinophilic endomyocardial disease","type":"exact"}],"termid":"MONDO:0019159","xrefs":{"Monarch":{"xref_id":"0019159"}}}


id: PBO:0052445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kruppel like factor 2 pseudogene 2","termid":"PBO:0052445"}


id: PBO:0004949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Spf38","termid":"PBO:0004949"}


id: PBO:0079555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 8","termid":"PBO:0079555"}


id: PBO:0063506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene","termid":"PBO:0063506"}


id: GO:0005046
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a KDEL sequence, the C terminus tetrapeptide sequence Lys-Asp-Glu-Leu found in proteins that are to be retained in the endoplasmic reticulum.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ER retention sequence binding","termid":"GO:0046923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005048"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005048"],"is_obsolete":false,"name":"KDEL sequence binding","synonyms":[{"name":"KDEL receptor activity","type":"narrow"}],"termid":"GO:0005046"}


id: GO:0090461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of glutamate within a cell.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular amino acid homeostasis","termid":"GO:0080144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular glutamate homeostasis","synonyms":[{"name":"cellular glutamate homeostasis","type":"exact"},{"name":"glutamate homeostasis","type":"exact"}],"termid":"GO:0090461"}


id: MONDO:0010276
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radioulnar synostosis, radial ray abnormalities, and severe malformations in the male","secondary_identifiers":["MESH:C564557","UMLS:C1846147","OMIM:300233","MEDGEN:335349"],"synonyms":[{"name":"radioulnar synostosis, radial RAY abnormalities, and severe malformations in the MALE","type":"related"}],"termid":"MONDO:0010276","xrefs":{"Monarch":{"xref_id":"0010276"}}}


id: MONDO:0014321
data:
  {"annotated_genes":["SJAG_03418","SJAG_03698"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86354,86355],"is_not":false,"summary":null,"term":"MONDO:0014321"}]},"cv_name":"mondo","definition":"Any primary ovarian failure in which the cause of the disease is a mutation in the STAG3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03418":null,"SJAG_03698":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"premature ovarian failure 8","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:615723","UMLS:C3810367","MEDGEN:816697","DOID:0080865"],"synonyms":[{"name":"POF8","type":"related"},{"name":"STAG3 primary ovarian failure","type":"exact"},{"name":"premature ovarian failure 8","type":"exact"},{"name":"premature ovarian failure type 8","type":"exact"},{"name":"primary ovarian failure caused by mutation in STAG3","type":"exact"}],"termid":"MONDO:0014321","terms_by_termid":{"MONDO:0014321":null},"xrefs":{"Monarch":{"xref_id":"0014321"}}}


id: GO:0052346
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of the production of nitric oxide as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of defense-related symbiont nitric oxide production (obsolete GO:0052346)","synonyms":[{"name":"positive regulation by organism of defense-related symbiont NO production","type":"exact"},{"name":"positive regulation by organism of defense-related symbiont nitric oxide production","type":"exact"}],"termid":"GO:0052346"}


id: PBO:0076827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomerase associated protein 1","termid":"PBO:0076827"}


id: FYPO:0000666
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a peptidase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0000654","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"abnormal peptidase activity","synonyms":[{"name":"abnormal protease activity","type":"exact"}],"termid":"FYPO:0000666"}


id: PBO:0041916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellin 4 precursor","termid":"PBO:0041916"}


id: MONDO:0700062
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease characteristic in which the cause of the disease is present in some of the cells of the organism.","definition_xrefs":["PMID:7847381"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mosaic vs complete","termid":"MONDO:0700061"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mosaic","termid":"MONDO:0700062","xrefs":{"Monarch":{"xref_id":"0700062"}}}


id: PBO:0039699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apoptosis inhibitor 5","termid":"PBO:0039699"}


