# terms

id: GO:0071261
data:
  {"annotated_genes":["SJAG_00959"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[98040],"is_not":false,"summary":null,"term":"GO:0071261"}]},"cv_name":"cellular_component","definition":"A translocon complex that contains a core heterotrimer of alpha, beta and gamma subunits, and may contain additional proteins (translocon-associated proteins or TRAPs); in budding yeast the core proteins are Ssh1p, Sbh2p, and Sss1p. The Ssh1 translocon complex is involved in the cotranslational pathway of protein transport across the ER membrane, and recognizes proteins bearing strongly hydrophobic signal sequences.","definition_xrefs":["GOC:mah","PMID:8612571","PMID:12134063"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translocon complex","termid":"GO:0071256"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00959":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005789"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005783","GO:0005737","GO:0005789","GO:0005575"],"is_obsolete":false,"name":"Ssh1 translocon complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Ssh1p-Sss1p-Sbh2p complex","type":"narrow"}],"termid":"GO:0071261","terms_by_termid":{"GO:0071261":null}}


id: GO:0002417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"B cell antigen processing and presentation which is initiated by uptake of antigen bound to the B cell receptor.","definition_xrefs":["PMID:15771591","ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell antigen processing and presentation","termid":"GO:0002450"},{"relation_name":"is_a","term_name":"antigen processing and presentation following receptor mediated endocytosis","termid":"GO:0002751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"B cell antigen processing and presentation mediated by B cell receptor uptake of antigen","synonyms":[{"name":"B lymphocyte antigen processing and presentation mediated by B cell receptor uptake of antigen","type":"exact"},{"name":"B-cell antigen processing and presentation mediated by B cell receptor uptake of antigen","type":"exact"},{"name":"B-lymphocyte antigen processing and presentation mediated by B cell receptor uptake of antigen","type":"exact"}],"termid":"GO:0002417"}


id: MONDO:0056820
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the nasal cavity or paranasal sinuses. Representative examples of benign neoplasms include Schneiderian papilloma and salivary gland-type adenoma. Representative examples of malignant neoplasms include carcinoma and lymphoma.","definition_xrefs":["NCIT:C7336"],"direct_ancestors":[{"relation_name":"is_a","term_name":"head and neck neoplasm","termid":"MONDO:0005586"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nasal cavity and paranasal sinus neoplasm","secondary_identifiers":["UMLS:C1334925","MEDGEN:235362"],"synonyms":[{"name":"nasal cavity and paranasal sinus neoplasm","type":"exact"}],"termid":"MONDO:0056820","xrefs":{"Monarch":{"xref_id":"0056820"}}}


id: PBO:0066961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 263","termid":"PBO:0066961"}


id: GO:0010673
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as part of the meiotic cell cycle.","definition_xrefs":["GOC:tb","PMID:8618927","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle (obsolete GO:0010673)","synonyms":[{"name":"activation of meiosis by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"positive regulation of meiosis by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"positive regulation of transcription from RNA polymerase II promoter, meiotic","type":"exact"},{"name":"stimulation of meiosis by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"up regulation of meiosis by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"up-regulation of meiosis by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"upregulation of meiosis by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"}],"termid":"GO:0010673"}


id: PBO:0065056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRELI domain containing 3B pseudogene 10","termid":"PBO:0065056"}


id: PBO:0051175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-64","termid":"PBO:0051175"}


id: PBO:0017587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFS myo-inositol transmembrane transporter","termid":"PBO:0017587"}


id: GO:0141033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host actin cytoskeleton by polymerizing the host filamentous actin. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:18331467","PMID:25293534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host actin cytoskeleton","termid":"GO:0141027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host actin cytoskeleton via actin polymerization","synonyms":[{"name":"perturbation by symbiont of host actin cytoskeleton via actin polymerization","type":"exact"}],"termid":"GO:0141033"}


id: PBO:0083604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame unlikely to encode a functional protein; overlaps 3' end of essential PRP19 gene encoding an RNA splicing factor","termid":"PBO:0083604"}


id: PR:Q9P7T7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC694.03 gene.","definition_xrefs":["UniProtKB:Q9P7T7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinamide mononucleotide adenylyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC694.03","synonyms":[{"name":"NMN adenylyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"NMN-specific adenylyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"NMNAT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPAC694.03","type":"exact"},{"name":"protein POF1 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7T7"}


id: GO:0090462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of orthinine within a cell.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular amino acid homeostasis","termid":"GO:0080144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular ornithine homeostasis","synonyms":[{"name":"cellular ornithine homeostasis","type":"exact"},{"name":"ornithine homeostasis","type":"exact"}],"termid":"GO:0090462"}


id: PBO:0079014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-SeC (anticodon TCA) 2-1","termid":"PBO:0079014"}


id: GO:1903091
data:
  {"annotated_genes":["SJAG_03652","SJAG_02152","SJAG_03808","SJAG_02962"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90099,90100,117499,118779],"is_not":false,"summary":null,"term":"GO:1903091"}]},"cv_name":"biological_process","definition":"The process in which pyridoxamine is transported across a membrane.","definition_xrefs":["PMID:15701794","GO_REF:0000069","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridoxamine transport","termid":"GO:0031922"},{"relation_name":"is_a","term_name":"vitamin transmembrane transport","termid":"GO:0035461"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02152":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"pyridoxamine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1903091","terms_by_termid":{"GO:1903091":null}}


id: PBO:0050882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IDI2 antisense RNA 1","termid":"PBO:0050882"}


id: PBO:0059538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded transcription factor binding site X","termid":"PBO:0059538"}


id: PBO:0078381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"triggering receptor expressed on myeloid cells like 5, pseudogene","termid":"PBO:0078381"}


id: PBO:0018141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L20, Mrpl20 (predicted)","termid":"PBO:0018141"}


id: PR:P14965
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ura4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P14965"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orotidine 5'-phosphate decarboxylase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.05c","synonyms":[{"name":"OMP decarboxylase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"OMPDCase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"OMPdecase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ura4","type":"exact"},{"name":"UMP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"uridine 5'-monophosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P14965"}


id: PBO:0077751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"target of myb1 like 1 membrane trafficking protein","termid":"PBO:0077751"}


id: GO:0055051
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex for the transport of metabolites out of the cell, consisting of 4 domains: two ATP-binding domains and two membrane spanning domains. In some cases, all 4 domains are contained on 1 polypeptide, while in others one ATP-binding domain and one membrane spanning domain are together on one polypeptide in what is called a half transporter. Two half-transporters come together to form a functional transporter. Transport of the substrate across the membrane is driven by the hydrolysis of ATP.","definition_xrefs":["GOC:mlg","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-binding cassette (ABC) transporter complex","termid":"GO:0043190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"ATP-binding cassette (ABC) transporter complex, integrated substrate binding","termid":"GO:0055051"}


id: PBO:0044809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 106B","termid":"PBO:0044809"}


id: PBO:0087860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator involved in regulating lysine biosynthesis; involved in the regulation of genes of the lysine biosynthesis pathway; requires 2-aminoadipate semialdehyde as co-inducer","termid":"PBO:0087860"}


id: PBO:0070420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribulose-5-phosphate-3-epimerase","termid":"PBO:0070420"}


id: PBO:0027243
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_polyadenylated_5S_rRNA_level","termid":"PBO:0027243"}


id: GO:0047311
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1D-1-guanidino-3-amino-1,3-dideoxy-scyllo-inositol + pyruvate = 1D-1-guanidino-1-deoxy-3-dehydro-scyllo-inositol + L-alanine.","definition_xrefs":["RHEA:15497","EC:2.6.1.56"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016769","GO:0003824"],"is_obsolete":false,"name":"1D-1-guanidino-3-amino-1,3-dideoxy-scyllo-inositol transaminase activity","secondary_identifiers":["MetaCyc:2.6.1.56-RXN","KEGG_REACTION:R03502"],"synonyms":[{"name":"1D-1-guanidino-3-amino-1,3-dideoxy-scyllo-inositol aminotransferase activity","type":"exact"},{"name":"1D-1-guanidino-3-amino-1,3-dideoxy-scyllo-inositol:pyruvate aminotransferase activity","type":"related"},{"name":"L-alanine-N-amidino-3-(or 5-)keto-scyllo-inosamine transaminase activity","type":"related"},{"name":"guanidinoaminodideoxy-scyllo-inositol-pyruvate aminotransferase activity","type":"related"}],"termid":"GO:0047311"}


id: SO:0000782
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a feature that occurs in nature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_attribute","termid":"SO:0000733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"natural","termid":"SO:0000782"}


id: PBO:0065587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 3","termid":"PBO:0065587"}


id: PBO:0004836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur ATPase involved in ribosome biogenesis Rli1 (predicted)","termid":"PBO:0004836"}


id: GO:0099517
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of synaptic vesicles along microtubules within a cell, powered by molecular motors.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle transport along microtubule","termid":"GO:0047496"},{"relation_name":"is_a","term_name":"synaptic vesicle cytoskeletal transport","termid":"GO:0099514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"synaptic vesicle transport along microtubule","termid":"GO:0099517"}


id: PBO:0052513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 26","termid":"PBO:0052513"}


id: PBO:0038446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAR2 splicing factor","termid":"PBO:0038446"}


id: PBO:0003559
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paroxysmal nocturnal haemoglobinuri","termid":"PBO:0003559"}


id: PBO:0078205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 6-7 (non-functional)","termid":"PBO:0078205"}


id: PATO:0001760
data:
  {"annotation_feature_type":"gene","cv_name":"quality","direct_ancestors":[{"relation_name":"is_a","term_name":"semi-fertile","termid":"PATO:0001767"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"female semi-fertile","termid":"PATO:0001760"}


id: MONDO:0032710
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0005027"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 72","secondary_identifiers":["UMLS:C5193063","MEDGEN:1681879","OMIM:618374","DOID:0112208"],"synonyms":[{"name":"DEE72","type":"exact"},{"name":"EIEE72","type":"exact"},{"name":"EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 72","type":"exact"},{"name":"developmental and epileptic encephalopathy 72","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 72","type":"exact"}],"termid":"MONDO:0032710","xrefs":{"Monarch":{"xref_id":"0032710"}}}


id: GO:0003871
data:
  {"annotated_genes":["SJAG_02290"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64086],"is_not":false,"summary":null,"term":"GO:0003871"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-methyltetrahydropteroyltri-L-glutamate + L-homocysteine = L-methionine + tetrahydropteroyltri-L-glutamate.","definition_xrefs":["RHEA:21196","EC:2.1.1.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-methyltransferase activity","termid":"GO:0008172"},{"relation_name":"is_a","term_name":"5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity","termid":"GO:0042085"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["MetaCyc:HOMOCYSMET-RXN","KEGG_REACTION:R04405"],"synonyms":[{"name":"5-methyltetrahydropteroyltri-L-glutamate:L-homocysteine S-methyltransferase activity","type":"related"},{"name":"MetE","type":"related"},{"name":"cobalamin-independent methionine synthase activity","type":"related"},{"name":"homocysteine methylase activity","type":"related"},{"name":"methionine synthase (cobalamin-independent) activity","type":"related"},{"name":"methyltetrahydropteroylpolyglutamate:homocysteine methyltransferase activity","type":"related"},{"name":"methyltransferase, tetrahydropteroylglutamate-homocysteine transmethylase activity","type":"related"},{"name":"tetrahydropteroylglutamate-homocysteine transmethylase activity","type":"related"},{"name":"tetrahydropteroyltriglutamate methyltransferase activity","type":"related"}],"termid":"GO:0003871","terms_by_termid":{"GO:0003871":null}}


id: PATO:0001370
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A coating quality which is sticky or clammy.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coating","termid":"PATO:0002012"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"viscid","termid":"PATO:0001370"}


id: PBO:0078396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Phe (anticodon GAA) 6-1","termid":"PBO:0078396"}


id: MONDO:0020517
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A clinical variant of Langerhans cell histiocytosis characterized by unifocal involvement of a bone (most often), skin, or lung. Patients are usually older children or adults usually presenting with a lytic bone lesion. The etiology is unknown. Morphologically, eosinophilic granuloma is characterized by the presence of Langerhans cells in a characteristic milieu which includes histiocytes, eosinophils, neutrophils, and small, mature lymphocytes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"is_a","term_name":"Langerhans cell histiocytosis","termid":"MONDO:0018310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"eosinophilic granuloma","secondary_identifiers":["NCIT:C3016","ICD9:277.89","icd11.foundation:1377407737","Orphanet:99871","UMLS:C0014461","ICDO:9752/1","MedDRA:10014956","SCTID:129000002","MEDGEN:4979","MESH:D004803"],"synonyms":[{"name":"Monostotic Langerhans cell histiocytosis","type":"exact"},{"name":"chronic and localised Langerhans cell histiocytosis","type":"exact"},{"name":"chronic and localized Langerhans cell histiocytosis","type":"exact"},{"name":"chronic unifocal Langerhans cell histiocytosis","type":"exact"},{"name":"eosinophilic granuloma","type":"exact"},{"name":"eosinophilic xanthomatous granuloma","type":"exact"},{"name":"unifocal Langerhans cell histiocytosis","type":"exact"}],"termid":"MONDO:0020517","xrefs":{"Monarch":{"xref_id":"0020517"}}}


id: PBO:0066580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of hemoglobinization and erythroid cell expansion","termid":"PBO:0066580"}


id: GO:1902735
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of receptor-mediated virion attachment to host cell.","definition_xrefs":["GOC:als","PMID:18385238","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biological process","termid":"GO:0048519"},{"relation_name":"is_a","term_name":"regulation of receptor-mediated virion attachment to host cell","termid":"GO:1902734"},{"relation_name":"negatively_regulates","term_name":"receptor-mediated virion attachment to host cell","termid":"GO:0046813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of receptor-mediated virion attachment to host cell","synonyms":[{"name":"down regulation of receptor-mediated virion attachment to host cell","type":"exact"},{"name":"down regulation of virion attachment, binding of host cell surface receptor","type":"exact"},{"name":"down-regulation of receptor-mediated virion attachment to host cell","type":"exact"},{"name":"down-regulation of virion attachment, binding of host cell surface receptor","type":"exact"},{"name":"downregulation of receptor-mediated virion attachment to host cell","type":"exact"},{"name":"downregulation of virion attachment, binding of host cell surface receptor","type":"exact"},{"name":"inhibition of receptor-mediated virion attachment to host cell","type":"narrow"},{"name":"inhibition of virion attachment, binding of host cell surface receptor","type":"narrow"},{"name":"negative regulation of virion attachment, binding of host cell surface receptor","type":"exact"}],"termid":"GO:1902735"}


id: PBO:0057983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3910-1","termid":"PBO:0057983"}


id: PR:Q9P3V8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of any of the following genes in Schizosaccharomyces pombe 972h-: SPAC977.01/SPBC1348.02/SPBPB2B2.19c.","definition_xrefs":["UniProtKB:Q9P3V8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C977.01/C1348.02/PB2B2.19c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB2B2.19c","synonyms":[{"name":"Spom972h-SPBPB2B2.19c","type":"exact"}],"termid":"PR:Q9P3V8"}


id: PBO:0075680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfide quinone oxidoreductase","termid":"PBO:0075680"}


id: MONDO:1010944
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mycosis fungoides that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mycosis fungoides, non-human animal","termid":"MONDO:1010211"},{"relation_name":"is_a","term_name":"non-hodgkin lymphoma, domestic cat","termid":"MONDO:1010949"},{"relation_name":"is_a","term_name":"cancer, domestic cat","termid":"MONDO:1012571"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mycosis fungoides, domestic cat","secondary_identifiers":["OMIA:001109-9685"],"termid":"MONDO:1010944","xrefs":{"Monarch":{"xref_id":"1010944"}}}


id: MONDO:0018222
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete X-linked intellectual disability due to GRIA3 anomalies (obsolete MONDO:0018222)","secondary_identifiers":["Orphanet:364028"],"termid":"MONDO:0018222","xrefs":{"Monarch":{"xref_id":"0018222"}}}


id: SO:0000063
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An interchromosomal transposition whereby a translocation in which one of the four broken ends loses a segment before re-joining.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interchromosomal_transposition","termid":"SO:1000155"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deficient_interchromosomal_transposition","synonyms":[{"name":"deficient interchromosomal transposition","type":"exact"}],"termid":"SO:0000063"}


id: GO:0030625
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a U11 small nuclear RNA (U11 snRNA).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA binding","termid":"GO:0017069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"U11 snRNA binding","termid":"GO:0030625"}


id: PBO:0039695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apurinic/apyrimidinic endodeoxyribonuclease 1","termid":"PBO:0039695"}


id: GO:0080088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates.","definition_xrefs":["PMID:19077165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spermidine hydroxycinnamate conjugate biosynthetic process","termid":"GO:0080088"}


id: PR:O13702
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glycerol dehydrogenase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00898","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol dehydrogenase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13F5.03c","secondary_identifiers":["UniProtKB:O13702"],"synonyms":[{"name":"GDH (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GLDH (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-gldA","type":"exact"}],"termid":"PR:O13702"}


id: PBO:0072819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAMD12 antisense RNA 1","termid":"PBO:0072819"}


id: FYPO:0006554
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the nucleus is normal (i.e. indistinguishable from wild type) when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to nucleus","termid":"FYPO:0006553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to nucleus during nitrogen starvation","synonyms":[{"name":"normal protein localisation to nucleus during nitrogen starvation","type":"exact"},{"name":"normal protein localization to nucleus during nitrogen depletion","type":"exact"},{"name":"normal protein localization to nucleus during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0006554"}


id: PBO:0066189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 11 pseudogene 1","termid":"PBO:0066189"}


id: GO:0047679
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arginine = D-arginine.","definition_xrefs":["EC:5.1.1.9","MetaCyc:ARGININE-RACEMASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"arginine racemase activity","secondary_identifiers":["RHEA:18069"],"termid":"GO:0047679"}


id: PBO:0082374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog); regulates the unfolded protein response, via UPRE binding, and membrane biogenesis; ER stress-induced splicing pathway triggers efficient Hac1p translation; two functional forms of Hac1p are produced; translation initiation is repressed under non-stress conditions; protein abundance increases in response to DNA replication stress","termid":"PBO:0082374"}


id: GO:0102445
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3',4',5,7-tetrahydroxy-3-methoxyflavone + S-adenosyl-L-methionine = 3,3'-O-dimethylquercetin + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:74715"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"3-methylquercetin 3'-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13930"],"termid":"GO:0102445"}


id: MONDO:0022495
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete arthritis short stature deafness (obsolete MONDO:0022495)","termid":"MONDO:0022495","xrefs":{"Monarch":{"xref_id":"0022495"}}}


id: MONDO:0017815
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of porencephaly that is acquired during the lifetime of the individual.","definition_xrefs":["MONDO:patterns/acquired"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porencephaly","termid":"MONDO:0017410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acquired porencephaly","secondary_identifiers":["GARD:21386","SCTID:38837006","UMLS:C0151860","MEDGEN:508833","Orphanet:314697"],"synonyms":[{"name":"acquired porencephaly","type":"exact"}],"termid":"MONDO:0017815","xrefs":{"Monarch":{"xref_id":"0017815"}}}


id: PBO:0035706
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cytoplasmic_microtubule_nucleation_during_mitotic_interphase","termid":"PBO:0035706"}


id: GO:0016567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which one or more ubiquitin groups are added to a protein.","definition_xrefs":["PMID:26906419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification by small protein conjugation","termid":"GO:0032446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"protein ubiquitination","secondary_identifiers":["Reactome:R-HSA-8852135"],"synonyms":[{"name":"protein ubiquitinylation","type":"exact"},{"name":"protein ubiquitylation","type":"exact"}],"termid":"GO:0016567"}


id: MONDO:0020276
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pigmentation disorder with eye involvement, excluding albinism (obsolete MONDO:0020276)","secondary_identifiers":["Orphanet:98708"],"termid":"MONDO:0020276","xrefs":{"Monarch":{"xref_id":"0020276"}}}


id: PBO:0085330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatidylinositol transfer protein; has a potential role in regulating lipid and fatty acid metabolism under heme-depleted conditions; interacts specifically with thioredoxin peroxidase; may have a role in oxidative stress resistance; protein abundance increases in response to DNA replication stress","termid":"PBO:0085330"}


id: MONDO:0033649
data:
  {"annotated_genes":["SJAG_04348"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85705],"is_not":false,"summary":null,"term":"MONDO:0033649"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex IV deficiency, nuclear-type","termid":"MONDO:0033885"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04348":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 4 deficiency, nuclear type 14","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070499","GARD:16411","MEDGEN:1763505","OMIM:619058","UMLS:C5436710"],"synonyms":[{"name":"MC4DN14","type":"exact"},{"name":"mitochondrial complex IV deficiency, nuclear type 14","type":"exact"}],"termid":"MONDO:0033649","terms_by_termid":{"MONDO:0033649":null},"xrefs":{"Monarch":{"xref_id":"0033649"}}}


id: GO:1902232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of positive thymic T cell selection.","definition_xrefs":["PMID:22080863","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell differentiation in thymus","termid":"GO:0033081"},{"relation_name":"regulates","term_name":"positive thymic T cell selection","termid":"GO:0045059"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of positive thymic T cell selection","synonyms":[{"name":"regulation of positive thymic T lymphocyte selection","type":"exact"},{"name":"regulation of positive thymic T-cell selection","type":"exact"},{"name":"regulation of positive thymic T-lymphocyte selection","type":"exact"}],"termid":"GO:1902232"}


id: GO:0045596
data:
  {"annotated_genes":["SJAG_04140","SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111214],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0075297"},{"annotations":[90689],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051517"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"negatively_regulates","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02169":null,"SJAG_04140":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell differentiation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of cell differentiation","type":"exact"},{"name":"down-regulation of cell differentiation","type":"exact"},{"name":"downregulation of cell differentiation","type":"exact"},{"name":"inhibition of cell differentiation","type":"narrow"}],"termid":"GO:0045596","terms_by_termid":{"GO:0051517":null,"GO:0075297":null}}


id: PBO:0001155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat protein, implicated in meiosis","termid":"PBO:0001155"}


id: GO:0034788
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,3-dihydroxy-2'-carboxybiphenyl + O2 = 2-hydroxy-6-oxo-6-(2-carboxyphenyl)-hexa-2,4-dienoate + H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,3-dihydroxy-2'-carboxybiphenyl 1,2-dioxygenase activity (obsolete GO:0034788)","termid":"GO:0034788"}


id: PBO:0072461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 25","termid":"PBO:0072461"}


id: PBO:0053586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 609","termid":"PBO:0053586"}


id: PBO:0027893
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-incomplete_mitotic_sister_chromatid_segregation,_with_unseparated_DNA_and_centromeric_DNA_dissociated_from_spindle","termid":"PBO:0027893"}


id: GO:0051184
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a cofactor from one side of a membrane to the other. A cofactor is a substance that is required for the activity of an enzyme or other protein.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cofactor transmembrane transporter activity (obsolete GO:0051184)","synonyms":[{"name":"cofactor transporter activity","type":"related"},{"name":"vitamin or cofactor transporter activity","type":"broad"}],"termid":"GO:0051184"}


id: MONDO:0022872
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corpus callosum dysgenesis X-linked recessive","termid":"MONDO:0022872","xrefs":{"Monarch":{"xref_id":"0022872"}}}


id: PBO:0066857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 157","termid":"PBO:0066857"}


id: PBO:0077143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tight junction protein 3","termid":"PBO:0077143"}


id: PBO:0115008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper-binding protein involved in cytochrome c oxidase assembly, Cmc1","termid":"PBO:0115008"}


id: GO:0060262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate frequency or extent of the covalent attachment of a palmitoyl group to the N-terminal amino acid residue of a protein.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of N-terminal protein palmitoylation","termid":"GO:0060254"},{"relation_name":"is_a","term_name":"negative regulation of protein lipidation","termid":"GO:1903060"},{"relation_name":"negatively_regulates","term_name":"N-terminal protein palmitoylation","termid":"GO:0006500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of N-terminal protein palmitoylation","termid":"GO:0060262"}


id: FYPO:0007867
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to one or both poles of the meiotic spindle is normal (i.e. indistinguishable from wild type) during the first meiotic nuclear division.","definition_xrefs":["PMID:34346498","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to meiotic spindle","termid":"FYPO:0007866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to meiotic spindle pole during meiosis I","synonyms":[{"name":"normal protein localisation to meiotic spindle pole during meiosis I","type":"exact"},{"name":"normal protein localisation to spindle pole during meiosis I","type":"exact"},{"name":"normal protein localization to meiosis I spindle pole","type":"exact"},{"name":"normal protein localization to spindle pole during first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0007867"}


id: MONDO:0044224
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete apocrine gland secretion, variation 1n (obsolete MONDO:0044224)","secondary_identifiers":["OMIM:117800"],"synonyms":[{"name":"Ear wax, wet/dry","type":"related"},{"name":"apocrine gland secretion, variation IN","type":"related"},{"name":"axillary odor, variation 1N","type":"related"},{"name":"axillary odor, variation in","type":"exact"},{"name":"cerumen, variation 1N","type":"related"},{"name":"colostrum secretion, variation 1N","type":"related"},{"name":"colostrum secretion, variation in","type":"exact"},{"name":"earwax, wet/dry","type":"exact"},{"name":"wet wax","type":"related"}],"termid":"MONDO:0044224","xrefs":{"Monarch":{"xref_id":"0044224"}}}


id: MONDO:0018391
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete male infertility with spermatogenesis disorder (obsolete MONDO:0018391)","secondary_identifiers":["Orphanet:399775"],"termid":"MONDO:0018391","xrefs":{"Monarch":{"xref_id":"0018391"}}}


id: MONDO:0100378
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute myeloid leukemia that has the chromosomal anomaly t(10;11)(p11.2;q23). (A cytogenetic abnormality that refers to the translocation of the short arm (p11.2) of chromosome 10 and the long arm (q23) of chromosome 11. It is associated with KMT2A (MLL)/ABI1 fusions and acute myeloid leukemia.)","definition_xrefs":["NCIT:C168758"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"acute myeloid leukemia, t(10;11)(p11.2;q23)","synonyms":[{"name":"AML, t(10;11)(p11.2;q23)","type":"exact"}],"termid":"MONDO:0100378","xrefs":{"Monarch":{"xref_id":"0100378"}}}


id: MONDO:0000308
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A systemic mycosis that arises from infection in an immunologically normal host.","direct_ancestors":[{"relation_name":"is_a","term_name":"systemic mycosis","termid":"MONDO:0000256"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary systemic mycosis","secondary_identifiers":["DOID:0050292"],"termid":"MONDO:0000308","xrefs":{"Monarch":{"xref_id":"0000308"}}}


id: FYPO:0001015
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-4-phosphate measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered cellular phosphoinositide level","termid":"FYPO:0001290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"altered cellular phosphatidylinositol-4-phosphate level","synonyms":[{"name":"abnormal cellular phosphatidylinositol-4-phosphate level","type":"exact"},{"name":"altered PI-4-P accumulation","type":"related"},{"name":"altered cellular PI(4)P level","type":"exact"},{"name":"altered cellular PI-4-P level","type":"exact"},{"name":"altered cellular phosphatidylinositol-4-phosphate level during mitotic cell cycle","type":"related"},{"name":"altered cellular phosphatidylinositol-4-phosphate level during vegetative growth","type":"exact"}],"termid":"FYPO:0001015"}


id: PBO:0066113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS guanyl releasing protein 4","termid":"PBO:0066113"}


id: PBO:0029996
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-small_P-bodies_during_glucose_starvation","termid":"PBO:0029996"}


id: PBO:0078601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 14","termid":"PBO:0078601"}


id: PBO:0089778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiosis specific serine/threonine protein kinase (NDR family) Mug27/Slk1","termid":"PBO:0089778"}


id: GO:0046396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-galacturonate, the D-enantiomer of galacturonate, the anion of galacturonic acid. D-galacturonic acid is a component of plant gums and bacterial cell walls.","definition_xrefs":["GOC:jsg","GOC:ai","ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide metabolic process","termid":"GO:0005996"},{"relation_name":"is_a","term_name":"galacturonate metabolic process","termid":"GO:0019586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"D-galacturonate metabolic process","synonyms":[{"name":"D-galacturonate metabolism","type":"exact"}],"termid":"GO:0046396"}


id: MONDO:0000298
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease caused by infection with Dioctophyme renale.","definition_xrefs":["MONDO:patterns/infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Enoplea infectious disease","termid":"MONDO:0005745"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dioctophymiasis","secondary_identifiers":["MEDGEN:4326","SCTID:40410004","UMLS:C0012482","DOID:0050260"],"synonyms":[{"name":"Dioctophyme renale caused disease or disorder","type":"exact"},{"name":"Dioctophyme renale disease or disorder","type":"exact"},{"name":"Dioctophyme renale infection","type":"exact"},{"name":"Dioctophyme renale infectious disease","type":"exact"},{"name":"dioctophyma renale infection","type":"related"},{"name":"dioctophymosis","type":"related"},{"name":"giant kidney worm disease","type":"related"}],"termid":"MONDO:0000298","xrefs":{"Monarch":{"xref_id":"0000298"}}}


id: GO:0033757
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sucrose + acceptor = 3-dehydro-alpha-D-glucosyl-beta-D-fructofuranoside + reduced acceptor.","definition_xrefs":["EC:1.1.99.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"glucoside 3-dehydrogenase activity","secondary_identifiers":["MetaCyc:GLUCOSIDE-3-DEHYDROGENASE-RXN","Wikipedia:Glucoside_3-dehydrogenase","RHEA:16589"],"synonyms":[{"name":"D-aldohexopyranoside dehydrogenase","type":"related"},{"name":"D-aldohexoside:(acceptor) 3-oxidoreductase","type":"related"},{"name":"D-aldohexoside:acceptor 3-oxidoreductase","type":"related"},{"name":"D-aldohexoside:cytochrome c oxidoreductase","type":"related"},{"name":"hexopyranoside-cytochrome c oxidoreductase","type":"related"}],"termid":"GO:0033757"}


id: GO:1990974
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whereby the centrosome is held at the cell center while the nucleus moves to the cell rear by actin retrograde flow resulting in the position of the centrosome between the nucleus and the leading edge of the cell.","definition_xrefs":["PMID:21173262","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear migration","termid":"GO:0007097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"actin-dependent nuclear migration","synonyms":[{"name":"actin-dependent nuclear movement","type":"related"}],"termid":"GO:1990974"}


id: MONDO:0011405
data:
  {"annotated_genes":["SJAG_01798"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86746],"is_not":false,"summary":null,"term":"MONDO:0011405"}]},"cv_name":"mondo","definition":"A skin disease characterized by poikiloderma, hyperkeratotic nails, generalized hyperkeratosis on palms and soles, neutropenia, short stature, and recurrent pulmonary infections. It has material basis in mutation in the C16ORF57 gene on chromosome 16q13.","definition_xrefs":["DOID:0060551","PMID:20734427"],"direct_ancestors":[{"relation_name":"is_a","term_name":"constitutional neutropenia","termid":"MONDO:0015134"},{"relation_name":"is_a","term_name":"hereditary poikiloderma","termid":"MONDO:0016382"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01798":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0005093"],"is_obsolete":false,"name":"poikiloderma with neutropenia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:388129","Orphanet:221046","UMLS:C1858723","NORD:2022","NCIT:C177535","NANDO:2200749","OMIM:604173","GARD:4085"],"synonyms":[{"name":"Clericuzio type poikiloderma with neutropenia","type":"related"},{"name":"PN","type":"related"},{"name":"Prurigo Nodularis","type":"exact"},{"name":"poikiloderma with neutropenia","type":"exact"},{"name":"poikiloderma with neutropenia Clericuzio type","type":"related"},{"name":"poikiloderma with neutropenia, Clericuzio type","type":"exact"},{"name":"poikiloderma with neutropenia, Clericuzio-type","type":"related"}],"termid":"MONDO:0011405","terms_by_termid":{"MONDO:0011405":null},"xrefs":{"Monarch":{"xref_id":"0011405"}}}


id: PBO:0045700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain Tctex-type family member 5","termid":"PBO:0045700"}


id: PBO:0041262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q B chain","termid":"PBO:0041262"}


id: MONDO:0001650
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute infection of the bladder. It is usually caused by bacteria. Signs and symptoms include increased frequency of urination, pain or burning during urination, fever, cloudy or bloody urine, and suprapubic pain.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"cystitis","termid":"MONDO:0006032"},{"relation_name":"is_a","term_name":"bacterial urinary tract infection","termid":"MONDO:0005247"},{"relation_name":"is_a","term_name":"cystitis","termid":"MONDO:0006032"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute cystitis","secondary_identifiers":["ICD10CM:N30.0","NCIT:C26934","DOID:13148","SCTID:68226007","UMLS:C0149523","ICD9:595.0","MEDGEN:57429"],"synonyms":[{"name":"acute cystitis","type":"exact"},{"name":"acute cystitis (disease)","type":"exact"},{"name":"cystitis, acute","type":"exact"}],"termid":"MONDO:0001650","xrefs":{"Monarch":{"xref_id":"0001650"}}}


id: PBO:0005033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biotin synthase","termid":"PBO:0005033"}


id: PBO:0039256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase 5 family member A1","termid":"PBO:0039256"}


id: MONDO:0006803
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Myocardial infarction in which the inferior wall of the heart is involved. It is often caused by occlusion of the right coronary artery.","definition_xrefs":["MESH:D056989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myocardial infarction","termid":"MONDO:0005068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"inferior myocardial infarction","secondary_identifiers":["MedDRA:10057546","MEDGEN:83305","UMLS:C0340305","DOID:5850","EFO:1000983"],"termid":"MONDO:0006803","xrefs":{"Monarch":{"xref_id":"0006803"}}}


id: PBO:0079220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tau tubulin kinase 2","termid":"PBO:0079220"}


id: PBO:0046144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 5 pseudogene 2","termid":"PBO:0046144"}


id: GO:0007506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the gonadal mesoderm over time, from its formation to the mature structure. The gonadal mesoderm is the middle layer of the three primary germ layers of the embryo which will go on to form the gonads of the organism.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"mesoderm development","termid":"GO:0007498"},{"relation_name":"is_a","term_name":"mesenchyme development","termid":"GO:0060485"},{"relation_name":"part_of","term_name":"gonad development","termid":"GO:0008406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gonadal mesoderm development","termid":"GO:0007506"}


id: PBO:0064680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 16","termid":"PBO:0064680"}


id: CHEBI:29108
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A calcium cation that has formula Ca.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium(2+)","termid":"CHEBI:29108"}


id: PBO:0053493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 471","termid":"PBO:0053493"}


id: GO:1905322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mesenchymal stem cell migration.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:26846297"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell migration","termid":"GO:0030335"},{"relation_name":"is_a","term_name":"regulation of mesenchymal stem cell migration","termid":"GO:1905320"},{"relation_name":"positively_regulates","term_name":"mesenchymal stem cell migration","termid":"GO:1905319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mesenchymal stem cell migration","synonyms":[{"name":"activation of mesenchymal stem cell migration","type":"narrow"},{"name":"up regulation of mesenchymal stem cell migration","type":"exact"},{"name":"up-regulation of mesenchymal stem cell migration","type":"exact"},{"name":"upregulation of mesenchymal stem cell migration","type":"exact"}],"termid":"GO:1905322"}


id: PBO:0045388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPP9 antisense RNA 1","termid":"PBO:0045388"}


id: MONDO:0016812
data:
  {"annotated_genes":["SJAG_03275","SJAG_03098"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85414],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012994"},{"annotations":[85024],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007495"}]},"cv_name":"mondo","definition":"Dopa-responsive dystonia (DRD) describes a group of neurometabolic disorders characterized by dystonia that typically shows diurnal fluctuations, that responds excellently to levodopa (L-dopa) and that is comprised of autosomal dominant dopa-responsive dystonia (DYT5a), autosomal recessive dopa-responsive dystonia (DYT5b) and dopa responsive dystonia due to sepiapterin reductase (SR) deficiency.","definition_xrefs":["Orphanet:255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic disease","termid":"MONDO:0005066"},{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03098":null,"SJAG_03275":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"dopa-responsive dystonia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:230332007","GARD:12144","NANDO:2200885","NCIT:C116719","MESH:C538007","icd11.foundation:1534901505","NANDO:1200516"],"synonyms":[{"name":"DYT-GCH1 (subtype)","type":"related"},{"name":"DYT-SPR (subtype)","type":"related"},{"name":"DYT-TH (subtype)","type":"related"},{"name":"DYT5","type":"related"},{"name":"DYT5 dystonia","type":"exact"},{"name":"HPD with diurnal fluctuation","type":"exact"},{"name":"Segawa's disease","type":"exact"},{"name":"dopa-responsive dystonia","type":"exact"},{"name":"hereditary progressive dystonia with diurnal fluctuation","type":"exact"}],"termid":"MONDO:0016812","terms_by_termid":{"MONDO:0007495":null,"MONDO:0012994":null},"xrefs":{"Monarch":{"xref_id":"0016812"}}}


id: PBO:0085885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; involved in invasive and pseudohyphal growth","termid":"PBO:0085885"}


id: MONDO:0001480
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"testicular cancer","termid":"MONDO:0005447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant tumor of undescended testis","secondary_identifiers":["DOID:12276","ICD9:186.0","MEDGEN:509335","SCTID:188219004","UMLS:C0153595"],"synonyms":[{"name":"malignant neoplasm of retained testis","type":"exact"},{"name":"malignant neoplasm of undescended testis","type":"exact"},{"name":"malignant tumor of retained testis","type":"exact"},{"name":"malignant tumour of retained testis","type":"exact"}],"termid":"MONDO:0001480","xrefs":{"Monarch":{"xref_id":"0001480"}}}


id: GO:0004860
data:
  {"annotated_genes":["SJAG_03974","SJAG_01245","SJAG_01210","SJAG_01118","SJAG_03931","SJAG_01821"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75826,107029],"is_not":false,"summary":null,"term":"GO:0004860"},{"annotations":[70933],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004862"},{"annotations":[108912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004861"},{"annotations":[118067,108426],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030291"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of a protein kinase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase inhibitor activity","termid":"GO:0019210"},{"relation_name":"is_a","term_name":"protein kinase regulator activity","termid":"GO:0019887"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01118":null,"SJAG_01210":null,"SJAG_01245":null,"SJAG_01821":null,"SJAG_03931":null,"SJAG_03974":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0004857","GO:0140678","GO:0030234","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"protein kinase inhibitor activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0004860","terms_by_termid":{"GO:0004860":null,"GO:0004861":null,"GO:0004862":null,"GO:0030291":null}}


id: PBO:0076607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 26","termid":"PBO:0076607"}


id: PR:O94627
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1347.08c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94627"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease H2 subunit B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1347.08c","synonyms":[{"name":"RNase H(202) (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNase H2 subunit B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Rnh2B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPBC1347.08c","type":"exact"},{"name":"ribonuclease HI subunit B (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94627"}


id: GO:1990002
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: hydroxyacetone + NADP+ = H+ + methylglyoxal + NADPH.","definition_xrefs":["PMID:16077126","RHEA:27986"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"methylglyoxal reductase (NADPH) (acetol producing) activity","secondary_identifiers":["MetaCyc:RXN0-4281"],"synonyms":[{"name":"methylglyoxal reductase (NADPH-dependent, acetol producing)","type":"exact"}],"termid":"GO:1990002"}


id: PBO:0001749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione synthetase large subunit Gsa1","termid":"PBO:0001749"}


id: PBO:0044398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily C member 59, pseudogene","termid":"PBO:0044398"}


id: PBO:0077942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 2-2","termid":"PBO:0077942"}


id: FYPO:0000525
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which pexophagy does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal autophagy","termid":"FYPO:0008082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished peroxisome degradation","synonyms":[{"name":"absent pexophagy","type":"exact"},{"name":"peroxisome degradation abolished","type":"exact"},{"name":"pexophagy abolished","type":"exact"},{"name":"pexophagy: absent","type":"related"}],"termid":"FYPO:0000525"}


id: PBO:0086100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for 20S pre-rRNA processing; involved in processing of the 20S pre-rRNA at site D to generate mature 18S rRNA; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0086100"}


id: GO:0003694
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Interacting selectively with a plasmid, an extrachromosomal genetic element usually characterized as a covalently continuous double stranded DNA molecule found in bacteria and some other microorganisms.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete plasmid binding (obsolete GO:0003694)","synonyms":[{"name":"plasmid binding","type":"exact"},{"name":"plasmid-associated protein","type":"related"}],"termid":"GO:0003694"}


id: PBO:0077593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane serine protease 4","termid":"PBO:0077593"}


id: GO:0044589
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to pectin.","definition_xrefs":["GOC:tt","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galacturonan binding","termid":"GO:0048028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"pectin binding","termid":"GO:0044589"}


id: MONDO:0009560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oculotrichoanal syndrome","secondary_identifiers":["ICD9:759.89","MESH:C536022","SCTID:703539006","UMLS:C1855425","Orphanet:2717","OMIM:248450","GARD:3395","MEDGEN:383680"],"synonyms":[{"name":"MANITOBA oculotrichoanal syndrome","type":"related"},{"name":"MOTA","type":"related"},{"name":"MOTA syndrome","type":"exact"},{"name":"Manitoba Trichoanal syndrome","type":"related"},{"name":"Manitoba oculotrichoanal syndrome","type":"exact"},{"name":"Marles syndrome","type":"exact"},{"name":"Marles-Greenberg-Persaud syndrome","type":"exact"},{"name":"unilateral upper eyelid coloboma, aberrant anterior hairline pattern, and anal anomalies","type":"related"}],"termid":"MONDO:0009560","xrefs":{"Monarch":{"xref_id":"0009560"}}}


id: PBO:0064973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 29, pseudogene","termid":"PBO:0064973"}


id: GO:0070234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of T cell death by apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of lymphocyte apoptotic process","termid":"GO:0070230"},{"relation_name":"is_a","term_name":"regulation of T cell apoptotic process","termid":"GO:0070232"},{"relation_name":"positively_regulates","term_name":"T cell apoptotic process","termid":"GO:0070231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T cell apoptotic process","synonyms":[{"name":"activation of T cell apoptosis","type":"narrow"},{"name":"positive regulation of T cell apoptosis","type":"narrow"},{"name":"positive regulation of T lymphocyte apoptosis","type":"exact"},{"name":"positive regulation of T-cell apoptosis","type":"exact"},{"name":"positive regulation of T-lymphocyte apoptosis","type":"exact"},{"name":"positive regulation of programmed cell death of T cells by apoptosis","type":"exact"},{"name":"stimulation of T cell apoptosis","type":"narrow"},{"name":"up regulation of T cell apoptosis","type":"exact"},{"name":"up-regulation of T cell apoptosis","type":"exact"},{"name":"upregulation of T cell apoptosis","type":"exact"}],"termid":"GO:0070234"}


id: PBO:0068725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4atac small nuclear 14, pseudogene","termid":"PBO:0068725"}


id: GO:0050683
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an AF-1 protein domain, a ligand-independent transactivation domain which is required for the full transcriptional activity of the receptor.","definition_xrefs":["PMID:9682036"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"AF-1 domain binding","termid":"GO:0050683"}


id: PBO:0069794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1080, pseudogene","termid":"PBO:0069794"}


id: PBO:0018191
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Neuromyotonia","termid":"PBO:0018191"}


id: MONDO:0015768
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Trisomy 5p is a chromosomal abnormality resulting from the duplication of a segment of variable size of the short arm of chromosome 5, which usually involves the distal band 5p15. The clinical presentation is variable but is always associated with severe intellectual deficit.","definition_xrefs":["Orphanet:1742"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete chromosomal anomaly with cataract (obsolete MONDO:0020226)","termid":"MONDO:0020226"},{"relation_name":"is_a","term_name":"partial trisomy/tetrasomy of the short arm of chromosome 5","termid":"MONDO:0016942"},{"relation_name":"is_a","term_name":"overgrowth syndrome","termid":"MONDO:0019716"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trisomy 5p","secondary_identifiers":["MEDGEN:1672500","UMLS:C0812464","NORD:957","GARD:6093"],"synonyms":[{"name":"5p duplication","type":"related"},{"name":"5p trisomy","type":"related"},{"name":"Chromosome 5, Trisomy 5p","type":"exact"},{"name":"Duplication 5p","type":"exact"},{"name":"Duplication of the short arm of chromosome 5","type":"exact"},{"name":"chromosome 5p duplication","type":"related"},{"name":"partial trisomy 5p","type":"related"},{"name":"trisomy of the short arm of chromosome 5","type":"exact"},{"name":"trisomy type 5p","type":"exact"}],"termid":"MONDO:0015768","xrefs":{"Monarch":{"xref_id":"0015768"}}}


id: PBO:0081245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 16","termid":"PBO:0081245"}


id: MOD:00810
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O3-mannosylserine.","definition_xrefs":["RESID:AA0402","PubMed:391559"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-serine","termid":"MOD:00002"},{"relation_name":"is_a","term_name":"mannosylated residue","termid":"MOD:00595"},{"relation_name":"is_a","term_name":"monohexosylated (Hex1)","termid":"MOD:00761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-mannosyl-L-serine","synonyms":[{"name":"(2S)-2-amino-3-(alpha-D-mannopyranosyloxy)propanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (Hex)","type":"exact"},{"name":"CARBOHYD O-linked (Man) serine","type":"exact"},{"name":"O-glycosylserine","type":"exact"},{"name":"O-mannopyranosylserine","type":"exact"},{"name":"O-mannosyl-L-serine","type":"exact"},{"name":"O3-mannosylserine","type":"exact"},{"name":"OManSer","type":"exact"}],"termid":"MOD:00810"}


id: PBO:0085444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Porphobilinogen deaminase; catalyzes the conversion of 4-porphobilinogen to hydroxymethylbilane, the third step in heme biosynthesis; localizes to the cytoplasm and nucleus; expression is regulated by Hap2p-Hap3p, but not by levels of heme; human homolog HMBS can complement yeast mutant and allow growth of haploid null after sporulation of a heterozygous diploid","termid":"PBO:0085444"}


id: PBO:0040317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit beta pseudogene 1","termid":"PBO:0040317"}


id: PBO:0078719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon TAA) 4-1","termid":"PBO:0078719"}


id: MOD:01111
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a dimethoxybenzhydryl group for a hydrogen atom.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dimethoxybenzhydryl modified residue","synonyms":[{"name":"4,4'-dimethoxybenzhydryl","type":"exact"},{"name":"Mbh","type":"exact"},{"name":"bis(4-methoxyphenyl)methyl","type":"exact"}],"termid":"MOD:01111"}


id: MONDO:0018961
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial melanoma (FM) is a rare inherited form of melanoma characterized by development of histologically confirmed melanoma in two first degrees relatives or more relatives in an affected family.","definition_xrefs":["Orphanet:618"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete inherited skin tumor (obsolete MONDO:0015950)","termid":"MONDO:0015950"},{"relation_name":"excluded_subClassOf","term_name":"obsolete rare skin tumor or hamartoma (obsolete MONDO:0019300)","termid":"MONDO:0019300"},{"relation_name":"excluded_subClassOf","term_name":"obsolete pigmented palpebral tumor (obsolete MONDO:0020177)","termid":"MONDO:0020177"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"melanoma","termid":"MONDO:0005105"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial melanoma","secondary_identifiers":["GARD:3460","MEDGEN:268851","DOID:6846","UMLS:C1512419","NCIT:C8498"],"synonyms":[{"name":"hereditary melanoma (disease)","type":"exact"}],"termid":"MONDO:0018961","xrefs":{"Monarch":{"xref_id":"0018961"}}}


id: PBO:0069640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 917, pseudogene","termid":"PBO:0069640"}


id: GO:0018006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The glucuronylation of the N-terminal amino acid of proteins.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein glucuronylation","termid":"GO:0018321"},{"relation_name":"is_a","term_name":"N-terminal protein amino acid modification","termid":"GO:0031365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006486"}],"interesting_parent_ids":["GO:0008150","GO:0006486"],"is_obsolete":false,"name":"N-terminal protein amino acid glucuronylation","termid":"GO:0018006"}


id: PBO:0045861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 2","termid":"PBO:0045861"}


id: PBO:0056457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARVEL domain containing 3","termid":"PBO:0056457"}


id: GO:0030147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of renal sodium excretion.","definition_xrefs":["ISBN:0198506732","GOC:mtg_cardio"],"gene_count":0,"genotype_count":0,"name":"obsolete natriuresis (obsolete GO:0030147)","secondary_identifiers":["Wikipedia:Natriuresis"],"synonyms":[{"name":"natriuresis","type":"exact"}],"termid":"GO:0030147"}


id: GO:0106106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which heat is generated by increasing metabolism in response to cold ambient temperatures in order to maintain a stable core body temperature.","definition_xrefs":["PMID:27876809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"temperature homeostasis","termid":"GO:0001659"},{"relation_name":"is_a","term_name":"adaptive thermogenesis","termid":"GO:1990845"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cold-induced thermogenesis","synonyms":[{"name":"CIT","type":"related"}],"termid":"GO:0106106"}


id: MONDO:0002795
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A central nervous system embryonal tumor, not otherwise specified that occurs in adults.","definition_xrefs":["NCIT:C5411"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system primitive neuroectodermal neoplasm","termid":"MONDO:0000640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adult central nervous system primitive neuroectodermal neoplasm","secondary_identifiers":["DOID:3865","MEDGEN:231039","UMLS:C1332196"],"synonyms":[{"name":"adult CNS PNET","type":"exact"},{"name":"adult CNS primitive neuroectodermal neoplasm","type":"exact"},{"name":"adult CNS primitive neuroectodermal tumor","type":"exact"},{"name":"adult CNS primitive neuroectodermal tumour","type":"exact"},{"name":"adult central nervous system primitive neuroectodermal neoplasm","type":"exact"},{"name":"adult central nervous system primitive neuroectodermal tumor","type":"exact"},{"name":"adult central nervous system primitive neuroectodermal tumour","type":"exact"},{"name":"adult central primitive neuroectodermal neoplasm","type":"exact"},{"name":"adult central primitive neuroectodermal tumor","type":"exact"},{"name":"adult central primitive neuroectodermal tumour","type":"exact"},{"name":"central nervous system primitive neuroectodermal neoplasm of adults","type":"exact"}],"termid":"MONDO:0002795","xrefs":{"Monarch":{"xref_id":"0002795"}}}


id: PBO:0057229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 384","termid":"PBO:0057229"}


id: PBO:0044157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTD small phosphatase 2","termid":"PBO:0044157"}


id: PATO:0002464
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extends beyond","termid":"PATO:0002464"}


id: PATO:0001301
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"optical quality","termid":"PATO:0001300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatic property","termid":"PATO:0001301"}


id: PBO:0080032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 18","termid":"PBO:0080032"}


id: FYPO:0004345
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at long terminal repeats is decreased.","definition_xrefs":["PMID:25002536","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to chromatin during vegetative growth","termid":"FYPO:0002909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to chromatin at long terminal repeat","synonyms":[{"name":"decreased protein localisation to chromatin at long terminal repeat","type":"exact"},{"name":"decreased protein localization to chromatin at LTR","type":"exact"},{"name":"decreased protein localization to chromatin at long terminal repeat during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to chromatin at long terminal repeat during vegetative growth","type":"exact"},{"name":"reduced protein localization to chromatin at long terminal repeat","type":"exact"}],"termid":"FYPO:0004345"}


id: PBO:0030974
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_methylation","termid":"PBO:0030974"}


id: MONDO:0006324
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A biologic subset of breast carcinoma defined by high expression of many genes expressed by adipose and other non-epithelial tissues.","definition_xrefs":["NCIT:C53557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast carcinoma by gene expression profile","termid":"MONDO:0006116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"normal breast-like subtype of breast carcinoma","secondary_identifiers":["MEDGEN:771111","EFO:1000402","UMLS:C3642471"],"synonyms":[{"name":"normal breast-like subtype of breast cancer","type":"exact"},{"name":"normal breast-like subtype of breast carcinoma","type":"exact"}],"termid":"MONDO:0006324","xrefs":{"Monarch":{"xref_id":"0006324"}}}


id: MONDO:0006979
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease of cats and mink characterized by a marked inflammation of adipose tissue and the deposition of 'ceroid' pigment in the interstices of the adipose cells. It is believed to be caused by feeding diets containing too much unsaturated fatty acid and too little vitamin E. (Merck Veterinary Manual, 5th ed; Stedman, 25th ed)","definition_xrefs":["MESH:D013231"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nutritional deficiency disease, non-human animal","termid":"MONDO:0700103"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"steatitis","secondary_identifiers":["DOID:4025","SCTID:33882007"],"synonyms":[{"name":"Nutritional Panniculitis","type":"exact"},{"name":"Nutritional Steatitis","type":"exact"},{"name":"Yellow fat disease","type":"exact"}],"termid":"MONDO:0006979","xrefs":{"Monarch":{"xref_id":"0006979"}}}


id: GO:0007254
data:
  {"annotated_genes":["SJAG_01718"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106290],"is_not":false,"summary":null,"term":"GO:0007254"}]},"cv_name":"biological_process","definition":"A MAPK cascade containing at least the JNK (MAPK8) MAP kinase. It starts with the activation of JUN3K (a MAPK3K), which activates JNKK a MAP2K), which in turn activates JNK. The cascade can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinases in the downstream tier. The JNK cascade is activated by stress signals, as well as by G protein-coupled receptors, growth factors, and cytokines, and results in cellular responses such as cell proliferation, cell differentiation, apoptosis and inflammation.","definition_xrefs":["PMID:20811974","PMID:11790549","PMID:23125017"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MAPK cascade","termid":"GO:0000165"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01718":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"JNK cascade","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-450321"],"synonyms":[{"name":"JNK1 cascade","type":"narrow"},{"name":"JNK2 cascade","type":"narrow"},{"name":"JNK3 cascade","type":"narrow"},{"name":"MAPK10 cascade","type":"narrow"},{"name":"MAPK8 cascade","type":"exact"},{"name":"MAPK9 cascade","type":"narrow"},{"name":"SAPK cascade","type":"broad"},{"name":"c-Jun N-terminal kinase cascade","type":"exact"},{"name":"stress-activated protein kinase cascade","type":"broad"}],"termid":"GO:0007254","terms_by_termid":{"GO:0007254":null}}


id: PBO:0085957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; null mutation suppresses cdc13-1 temperature sensitivity; (GFP)-fusion protein localizes to both the cytoplasm and the nucleus","termid":"PBO:0085957"}


id: PBO:0043860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRADD pseudogene 1","termid":"PBO:0043860"}


id: MONDO:1012865
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hearing loss that occurs in dogs due to a mutation in the KLF7 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss disorder, non-human animal","termid":"MONDO:1012969"},{"relation_name":"is_a","term_name":"inherited auditory system disease, non-human animal","termid":"MONDO:1012970"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deafness, KLF7-related, dog","secondary_identifiers":["OMIA:002326-9615"],"synonyms":[{"name":"congenital deafness, dog","type":"related"}],"termid":"MONDO:1012865","xrefs":{"Monarch":{"xref_id":"1012865"}}}


id: GO:0045837
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of membrane potential","synonyms":[{"name":"down regulation of membrane potential","type":"exact"},{"name":"down-regulation of membrane potential","type":"exact"},{"name":"downregulation of membrane potential","type":"exact"},{"name":"inhibition of membrane potential","type":"narrow"},{"name":"reduction of membrane potential","type":"exact"}],"termid":"GO:0045837"}


id: MONDO:0001166
data:
  {"annotated_genes":["SJAG_03994"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86106],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013898"}]},"cv_name":"mondo","definition":"Inflammation of renal tissue.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03994":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephritis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["EFO:1002050","DOID:10952","MESH:D009393","SCTID:52845002","NCIT:C26833","UMLS:C0027697","ICD9:583.9","MEDGEN:14328","ICD9:583.7","ICD9:583.89"],"synonyms":[{"name":"inflammation of kidney","type":"exact"},{"name":"kidney inflammation","type":"exact"}],"termid":"MONDO:0001166","terms_by_termid":{"MONDO:0013898":null},"xrefs":{"Monarch":{"xref_id":"0001166"}}}


id: PATO:0001472
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A depth which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased size","termid":"PATO:0000587"},{"relation_name":"is_a","term_name":"depth","termid":"PATO:0001595"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased depth","secondary_identifiers":["PATO:0001692"],"synonyms":[{"name":"low depth","type":"exact"},{"name":"shallow","type":"exact"}],"termid":"PATO:0001472"}


id: PBO:0063856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P38 inhibited cutaneous squamous cell carcinoma associated lincRNA","termid":"PBO:0063856"}


id: PBO:0031028
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_concentration_of_substance_in_growth_medium","termid":"PBO:0031028"}


id: MONDO:0024349
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A prevalent and benign dermatological condition that predominantly affects children and adolescents. The name \\\"pityriasis alba\\\" derives from its appearance, where \\\"pityriasis\\\" denotes the fine scales and \\\"alba\\\" signifies the pale color (hypopigmentation).","definition_xrefs":["PMID:28613715"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exanthem","termid":"MONDO:0006547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"pityriasis alba","secondary_identifiers":["icd11.foundation:1386947078","ICD9:696.5","SCTID:402296004","UMLS:C0085657","MEDGEN:39322"],"termid":"MONDO:0024349","xrefs":{"Monarch":{"xref_id":"0024349"}}}


id: PBO:0065615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTP4A2 pseudogene 1","termid":"PBO:0065615"}


id: PBO:0042595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CMT1A duplicated region transcript 10","termid":"PBO:0042595"}


id: MONDO:0859339
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"tooth agenesis","termid":"MONDO:0005486"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tooth agenesis, selective, 10","secondary_identifiers":["MEDGEN:1824050","OMIM:620173","UMLS:C5774277"],"termid":"MONDO:0859339","xrefs":{"Monarch":{"xref_id":"0859339"}}}


id: GO:0103088
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-oxo-8-methylthiooctanoate + acetyl-CoA + H2O = H+ + 2-(6'-methylthio)hexylmalate + coenzyme A.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-(6'-methylthio)hexylmalate synthase activity (obsolete GO:0103088)","termid":"GO:0103088"}


id: GO:0050188
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphoenolpyruvate = 3-phosphonopyruvate.","definition_xrefs":["EC:5.4.2.9","RHEA:17013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular phosphotransferase activity","termid":"GO:0016868"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"phosphoenolpyruvate mutase activity","secondary_identifiers":["MetaCyc:PHOSPHOENOLPYRUVATE-MUTASE-RXN","KEGG_REACTION:R00661"],"synonyms":[{"name":"PEP mutase activity","type":"related"},{"name":"PEP phosphomutase activity","type":"related"},{"name":"PEPPM","type":"related"},{"name":"phosphoenolpyruvate 2,3-phosphonomutase activity","type":"related"},{"name":"phosphoenolpyruvate phosphomutase activity","type":"related"},{"name":"phosphoenolpyruvate-phosphonopyruvate phosphomutase activity","type":"related"}],"termid":"GO:0050188"}


id: PBO:0002523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase (predicted)","termid":"PBO:0002523"}


id: GO:0102139
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (2E,4E)-6-(2-aminophenyl)-2-hydroxy-6-oxohexa-2,4-dienoate + H2O = H+ + anthranilate + (2E)-2-hydroxypenta-2,4-dienoate.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-hydroxy-6-oxo-6-(2'-aminophenyl)-hexa-2,4dienoate hydrolase activity (obsolete GO:0102139)","termid":"GO:0102139"}


id: MONDO:0044311
data:
  {"annotated_genes":["SJAG_03568","SJAG_01632","SJAG_02682"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86645,86646,86647],"is_not":false,"summary":null,"term":"MONDO:0044311"}]},"cv_name":"mondo","definition":"BTDD is an autosomal dominant disorder characterized by brachycephaly, trichomegaly, and developmental delay. Although it is caused by dysfunction of the ribosome, patients do not have anemia (summary by {2:Paolini et al., 2017}).","definition_xrefs":["OMIM:617412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01632":null,"SJAG_02682":null,"SJAG_03568":null},"genotype_count":0,"is_obsolete":false,"name":"brachycephaly, trichomegaly, and developmental delay","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4479431","DOID:0070415","MEDGEN:1374289"],"synonyms":[{"name":"BTDD","type":"related"},{"name":"Macinnes syndrome","type":"related"},{"name":"brachycephaly, trichomegaly, and developmental delay","type":"exact"}],"termid":"MONDO:0044311","terms_by_termid":{"MONDO:0044311":null},"xrefs":{"Monarch":{"xref_id":"0044311"}}}


id: MONDO:0016876
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal deletion","termid":"MONDO:0000761"},{"relation_name":"is_a","term_name":"chromosome 11 disorder","termid":"MONDO:0700018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of chromosome 11","secondary_identifiers":["Orphanet:261816","UMLS:C5679659","GARD:20799","MEDGEN:1826017"],"synonyms":[{"name":"partial deletion of chromosome type 11","type":"exact"},{"name":"partial monosomy of chromosome 11","type":"exact"}],"termid":"MONDO:0016876","xrefs":{"Monarch":{"xref_id":"0016876"}}}


id: SO:0001536
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant whereby the effect is evaluated with respect to a reference.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_variant","termid":"SO:0001060"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functional_effect_variant","synonyms":[{"name":"functional effect variant","type":"exact"},{"name":"functional variant","type":"exact"}],"termid":"SO:0001536"}


id: PBO:0073323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stress associated endoplasmic reticulum protein 1","termid":"PBO:0073323"}


id: GO:0007546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The events determining the somatic sexual phenotype after the initial transmission of that phenotype to soma-specific information pathways.","definition_xrefs":["GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"processes downstream of sex determination signal","termid":"GO:0007545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"somatic processes downstream of sex determination signal","termid":"GO:0007546"}


id: PR:000085732
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3.1, initiator methionine removed form (Schizosaccharomyces pombe) that has been phosphorylated on Ser-10. Example: UniProtKB:P09988, 2-136, Ser-11, MOD:00046.","definition_xrefs":["PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3.1, initiator methionine removed form (Schizosaccharomyces pombe)","termid":"PR:000027574"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hht1/Phos(S10)","pombase_gene_id":"SPAC1834.04","synonyms":[{"name":"PRO_0000221366, Ser-11, MOD:00046","type":"related"},{"name":"PomBase_original_PRO_term_name: histone H3.1, initiator methionine removed phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-hht1/InitMet-/Phos:1","type":"exact"},{"name":"UniProtKB:P09988, 2-136, Ser-11, MOD:00046","type":"related"},{"name":"hht1/Phos(S10)","type":"exact"}],"termid":"PR:000085732"}


id: PBO:0059977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND3 pseudogene 22","termid":"PBO:0059977"}


id: GO:0043593
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The layer in a bacterial endospore that lies under the exosporium, and is impermeable to many toxic molecules. The coat may also contain enzymes that are involved in endospore germination.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"endospore external encapsulating structure","termid":"GO:0043591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005618"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005618"],"is_obsolete":false,"name":"endospore coat","termid":"GO:0043593"}


id: MONDO:0017698
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"glycogen storage disease due to glycogen branching enzyme deficiency","termid":"MONDO:0009292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0037792"],"is_obsolete":false,"name":"glycogen storage disease due to glycogen branching enzyme deficiency, congenital neuromuscular form","secondary_identifiers":["GARD:17397","Orphanet:308670","UMLS:C1856304","MEDGEN:343523"],"synonyms":[{"name":"GBE deficiency, congenital neuromuscular form","type":"exact"},{"name":"GSD due to glycogen branching enzyme deficiency, congenital neuromuscular form","type":"exact"},{"name":"GSD type 4, congenital neuromuscular form","type":"exact"},{"name":"GSDIV, congenital neuromuscular form","type":"exact"},{"name":"glycogen storage disease type 4, congenital neuromuscular form","type":"exact"},{"name":"glycogen storage disease type IV, congenital neuromuscular form","type":"exact"},{"name":"glycogenosis due to glycogen branching enzyme deficiency, congenital neuromuscular form","type":"exact"},{"name":"glycogenosis type 4, congenital neuromuscular form","type":"exact"},{"name":"glycogenosis type IV, congenital neuromuscular form","type":"exact"}],"termid":"MONDO:0017698","xrefs":{"Monarch":{"xref_id":"0017698"}}}


id: MONDO:0014012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant Charcot-Marie-Tooth disease type 2Q is a rare subtype of autosomal dominant Charcot-Marie-Tooth disease type 2 characterized by adolescent to adulthood-onset of symmetrical, slowly progressive distal muscle weakness and atrophy (with a predominant weakness of the distal lower limbs) associated with reduced or absent deep tendon reflexes, pes cavus and mild to moderated deep sensory impairment.","definition_xrefs":["Orphanet:329258"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease axonal type 2Q","secondary_identifiers":["GARD:12446","MEDGEN:767280","UMLS:C3554366","DOID:0110170","OMIM:615025"],"synonyms":[{"name":"CMT2Q","type":"exact"},{"name":"Charcot-Marie-Tooth disease caused by mutation in DHTKD1","type":"exact"},{"name":"Charcot-Marie-Tooth disease type 2Q","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, autosomal dominant, type 2Q","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2Q","type":"related"},{"name":"Charcot-Marie-Tooth neuropathy type 2Q","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, type 2Q","type":"related"},{"name":"DHTKD1 Charcot-Marie-Tooth disease","type":"exact"},{"name":"autosomal dominant Charcot-Marie-Tooth disease type 2Q","type":"exact"},{"name":"autosomal dominant axonal Charcot-Marie-Tooth disease type 2Q","type":"exact"}],"termid":"MONDO:0014012","xrefs":{"Monarch":{"xref_id":"0014012"}}}


id: GO:0140290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of ADP-ribose from ADP-ribosylserine.","definition_xrefs":["PMID:28650317","PMID:29234005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein de-ADP-ribosylation","termid":"GO:0051725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-serine ADP-deribosylation","termid":"GO:0140290"}


id: PBO:0043470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-NOT transcription complex subunit 7 pseudogene 2","termid":"PBO:0043470"}


id: FYPO:0007491
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the structure of an O-linked glycan moiety of a nascent or mature glycoprotein is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:32918581","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal O-linked glycoprotein glycan structure","synonyms":[{"name":"normal O-linked glycoprotein oligosaccharide structure","type":"related"}],"termid":"FYPO:0007491"}


id: MOD:00748
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct with a compound containing a pterin group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by chemical process","termid":"MOD:01156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pterin modified residue","synonyms":[{"name":"PterRes","type":"exact"}],"termid":"MOD:00748"}


id: GO:0010458
data:
  {"annotated_genes":["SJAG_03048","SJAG_04464","SJAG_04943","SJAG_01050","SJAG_03126","SJAG_00082","SJAG_01801"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102369,67721],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0001100"},{"annotations":[93720,102376,111977,89954],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0031536"},{"annotations":[70030,111027],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0007096"}]},"cv_name":"biological_process","definition":"The cell cycle transition where a cell leaves M phase and enters a new G1 phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cell cycle phase transition","termid":"GO:0044772"},{"relation_name":"part_of","term_name":"mitotic nuclear division","termid":"GO:0140014"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01050":null,"SJAG_01801":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_04464":null,"SJAG_04943":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0044772"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0044772"],"is_obsolete":false,"name":"exit from mitosis","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"exit from mitotic division","type":"exact"},{"name":"mitotic exit","type":"exact"}],"termid":"GO:0010458","terms_by_termid":{"GO:0001100":null,"GO:0007096":null,"GO:0031536":null}}


id: PBO:0059739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 13","termid":"PBO:0059739"}


id: PBO:0091138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial protein, human C6orf136 ortholog","termid":"PBO:0091138"}


id: GO:1901439
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of toluene metabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of toluene metabolic process","termid":"GO:1901437"},{"relation_name":"positively_regulates","term_name":"toluene metabolic process","termid":"GO:0018970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of toluene metabolic process","synonyms":[{"name":"activation of methylbenzene metabolic process","type":"exact"},{"name":"activation of methylbenzene metabolism","type":"exact"},{"name":"activation of toluene metabolic process","type":"narrow"},{"name":"activation of toluene metabolism","type":"exact"},{"name":"positive regulation of methylbenzene metabolic process","type":"exact"},{"name":"positive regulation of methylbenzene metabolism","type":"exact"},{"name":"positive regulation of toluene metabolism","type":"exact"},{"name":"up regulation of methylbenzene metabolic process","type":"exact"},{"name":"up regulation of methylbenzene metabolism","type":"exact"},{"name":"up regulation of toluene metabolic process","type":"exact"},{"name":"up regulation of toluene metabolism","type":"exact"},{"name":"up-regulation of methylbenzene metabolic process","type":"exact"},{"name":"up-regulation of methylbenzene metabolism","type":"exact"},{"name":"up-regulation of toluene metabolic process","type":"exact"},{"name":"up-regulation of toluene metabolism","type":"exact"},{"name":"upregulation of methylbenzene metabolic process","type":"exact"},{"name":"upregulation of methylbenzene metabolism","type":"exact"},{"name":"upregulation of toluene metabolic process","type":"exact"},{"name":"upregulation of toluene metabolism","type":"exact"}],"termid":"GO:1901439"}


id: PBO:0013766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-actin capping protein beta subunit Acp2","termid":"PBO:0013766"}


id: PBO:0116713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCGF3 antisense RNA 2","termid":"PBO:0116713"}


id: GO:0140639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of a pyroptotic inflammatory response.","definition_xrefs":["PMID:24626226"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of inflammatory response","termid":"GO:0050729"},{"relation_name":"positively_regulates","term_name":"pyroptotic inflammatory response","termid":"GO:0070269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of pyroptotic inflammatory response","synonyms":[{"name":"positive regulation of pyroptosis","type":"broad"}],"termid":"GO:0140639"}


id: PBO:0043024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHMP1B antisense RNA 1","termid":"PBO:0043024"}


id: PBO:0067474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 605, pseudogene","termid":"PBO:0067474"}


id: PBO:0080796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-prolyl aminopeptidase 3","termid":"PBO:0080796"}


id: PR:Q10100
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear transport factor 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear transport factor 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC15F9.03c","secondary_identifiers":["UniProtKB:Q10100"],"synonyms":[{"name":"NTF-2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NUTF2","type":"exact"}],"termid":"PR:Q10100"}


id: GO:0050249
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + Renilla luciferin = adenosine 3',5'-diphosphate + H+ + luciferyl sulfate.","definition_xrefs":["EC:2.8.2.10","RHEA:20481"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016782"],"is_obsolete":false,"name":"Renilla-luciferin sulfotransferase activity","secondary_identifiers":["MetaCyc:RENILLA-LUCIFERIN-SULFOTRANSFERASE-RXN","KEGG_REACTION:R03138"],"synonyms":[{"name":"3'-phosphoadenylyl-sulfate:Renilla luciferin sulfotransferase activity","type":"related"},{"name":"Renilla-luciferin sulphotransferase activity","type":"exact"},{"name":"luciferin sulfokinase (3'-phosphoadenylyl sulfate:luciferin sulfotransferase)","type":"related"},{"name":"luciferin sulfokinase activity","type":"related"},{"name":"luciferin sulfotransferase activity","type":"broad"}],"termid":"GO:0050249"}


id: PBO:0086475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative mitochondrial protein of unknown function; identified by homology; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm","termid":"PBO:0086475"}


id: GO:0032039
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that stably associates with the C-terminus of RNA polymerase II and mediates 3'-end processing of small nuclear RNAs generated by RNA polymerase II.","definition_xrefs":["PMID:16239144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"integrator complex","termid":"GO:0032039"}


id: GO:0047388
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [glutamine synthetase]-O(4)-(5'-adenylyl)-L-tyrosine + phosphate = [glutamine synthetase]-L-tyrosine + ADP.","definition_xrefs":["RHEA:43716"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotidyltransferase activity","termid":"GO:0016779"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016779","GO:0140096","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase activity","secondary_identifiers":["MetaCyc:GSDEADENYLATION-RXN","EC:2.7.7.89","KEGG_REACTION:R03474"],"synonyms":[{"name":"[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase","type":"related"},{"name":"adenylyl(glutamine synthetase) hydrolase activity","type":"exact"},{"name":"adenylyl-L-glutamate:ammonia ligase (ADP-forming) adenylylhydrolase activity","type":"exact"},{"name":"adenylyl-[glutamate-ammonia ligase] hydrolase activity","type":"exact"},{"name":"adenylyl-glutamate-ammonia ligase hydrolase activity","type":"exact"},{"name":"adenylyl-glutamine-synthetasehydrolase activity","type":"exact"}],"termid":"GO:0047388"}


id: MONDO:0019623
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary angioedema (HAE) is a genetic disease characterized by the occurrence of transitory and recurrent subcutaneous and/or submucosal edemas resulting in swelling and/or abdominal pain.","definition_xrefs":["Orphanet:91378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angioedema","termid":"MONDO:0010481"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"hereditary angioedema","secondary_identifiers":["NANDO:2200795","MEDGEN:9229","NANDO:1200365","MESH:D054179","SCTID:82966003","NCIT:C84758","OMIMPS:106100","icd11.foundation:795969334","DOID:14735","GARD:5979","UMLS:C0019243","MedDRA:10019860"],"synonyms":[{"name":"HAE","type":"exact"},{"name":"HANE","type":"exact"},{"name":"angioedema, hereditary","type":"related"},{"name":"deficiency of C1 esterase inhibitor","type":"related"},{"name":"familial angioneurotic edema","type":"exact"},{"name":"familial angioneurotic oedema","type":"exact"},{"name":"hereditary angioedema","type":"exact"},{"name":"hereditary angioneurotic edema","type":"exact"},{"name":"hereditary angioneurotic oedema","type":"exact"},{"name":"hereditary bradykinine-induced angioedema","type":"exact"},{"name":"hereditary non histamine-induced angioedema","type":"exact"}],"termid":"MONDO:0019623","xrefs":{"Monarch":{"xref_id":"0019623"}}}


id: MONDO:0015444
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cleidocranial dysplasia (obsolete MONDO:0015444)","termid":"MONDO:0015444","xrefs":{"Monarch":{"xref_id":"0015444"}}}


id: PBO:0070748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 4","termid":"PBO:0070748"}


id: GO:0030443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mcc"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear translocation of MAPK during sporulation (sensu Fungi) (obsolete GO:0030443)","synonyms":[{"name":"nuclear translocation of MAPK during sporulation (sensu Fungi)","type":"exact"}],"termid":"GO:0030443"}


id: MONDO:1011432
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Beta-mannosidosis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal storage disease, non-human animal","termid":"MONDO:1010171"},{"relation_name":"is_a","term_name":"peripheral neuropathy, non-human animal","termid":"MONDO:1010239"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis, non-human animal","termid":"MONDO:1011310"},{"relation_name":"is_a","term_name":"hereditary neurological disease, non-human animal","termid":"MONDO:1012972"},{"relation_name":"is_a","term_name":"skeletal dysplasia, non-human animal","termid":"MONDO:1012973"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-mannosidosis, non-human animal","secondary_identifiers":["OMIA:000626"],"termid":"MONDO:1011432","xrefs":{"Monarch":{"xref_id":"1011432"}}}


id: GO:0001167
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a specific DNA sequence in order to modulate transcription by RNA polymerase I. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.","definition_xrefs":["GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase I transcription factor activity, sequence-specific DNA binding (obsolete GO:0001167)","synonyms":[{"name":"sequence-specific DNA binding RNA polymerase I transcription factor activity","type":"exact"}],"termid":"GO:0001167"}


id: FYPO:0002490
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that has a greater length, diameter, and volume than normal, and undergoes two or more rounds of cell division and then dies. The ratio between cell length and diameter remains normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions, abnormal morphology","termid":"FYPO:0002148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, swollen cell","synonyms":[{"name":"inviable after spore germination, multiple cell divisions, enlarged cell","type":"related"},{"name":"inviable after spore germination, multiple cell divisions, increased cell size","type":"related"},{"name":"inviable after spore germination, multiple cell divisions, increased cell volume","type":"exact"},{"name":"inviable after spore germination, multiple cell divisions, large cell","type":"related"},{"name":"inviable following spore germination, multiple cell divisions, swollen cell","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, swollen cell","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, swollen cell","type":"exact"}],"termid":"FYPO:0002490"}


id: MONDO:1011359
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Subcutaneous tissue disorder that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subcutaneous tissue disorder, non-human animal","termid":"MONDO:1011359","xrefs":{"Monarch":{"xref_id":"1011359"}}}


id: PBO:0085171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Oligomeric mitochondrial matrix chaperone; cooperates with Ssc1p in mitochondrial thermotolerance after heat shock; able to prevent the aggregation of misfolded proteins as well as resolubilize protein aggregates","termid":"PBO:0085171"}


id: PBO:0042749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein U pseudogene 2","termid":"PBO:0042749"}


id: GO:0140593
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The apoplast region surrounding a host plant cell. Plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:28082413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host apoplast","synonyms":[{"name":"host cell apoplast","type":"exact"}],"termid":"GO:0140593"}


id: GO:0071246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chlorate stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chlorate","termid":"GO:0010157"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to chlorate","termid":"GO:0071246"}


id: PBO:0083243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; extensively overlaps essential OST2 gene encoding a subunit of the ER lumen oligosaccharyltransferase complex","termid":"PBO:0083243"}


id: GO:0009672
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: auxin(out) + H+(out) = auxin(in) + H+(in).","definition_xrefs":["PMID:8688077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"auxin transmembrane transporter activity","termid":"GO:0080161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"auxin:proton symporter activity","synonyms":[{"name":"auxin:hydrogen symporter activity","type":"exact"}],"termid":"GO:0009672"}


id: PBO:0047810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FOXL3 overlapping transcript 1","termid":"PBO:0047810"}


id: PBO:0016041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M phase inducer tyrosine phosphatase Cdc25","termid":"PBO:0016041"}


id: GO:0090463
data:
  {"annotated_genes":["SJAG_01471"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96595],"is_not":false,"summary":null,"term":"GO:0090463"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of lysine within a cell.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular amino acid homeostasis","termid":"GO:0080144"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01471":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular lysine homeostasis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cellular lysine homeostasis","type":"exact"},{"name":"lysine homeostasis","type":"exact"}],"termid":"GO:0090463","terms_by_termid":{"GO:0090463":null}}


id: PBO:0039030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with GTPase domain, ankyrin repeat and PH domain 6","termid":"PBO:0039030"}


id: GO:0009207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside triphosphate catabolic process","termid":"GO:0009146"},{"relation_name":"is_a","term_name":"ribonucleoside triphosphate catabolic process","termid":"GO:0009203"},{"relation_name":"is_a","term_name":"purine ribonucleoside triphosphate metabolic process","termid":"GO:0009205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"purine ribonucleoside triphosphate catabolic process","synonyms":[{"name":"purine ribonucleoside triphosphate breakdown","type":"exact"},{"name":"purine ribonucleoside triphosphate catabolism","type":"exact"},{"name":"purine ribonucleoside triphosphate degradation","type":"exact"}],"termid":"GO:0009207"}


id: PBO:0065070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRICKLE1 pseudogene 1","termid":"PBO:0065070"}


id: GO:0019970
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to interleukin-11.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth factor binding","termid":"GO:0019838"},{"relation_name":"is_a","term_name":"cytokine binding","termid":"GO:0019955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"interleukin-11 binding","synonyms":[{"name":"IL-11 binding","type":"exact"}],"termid":"GO:0019970"}


id: PBO:0056055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lung cancer associated transcript 1","termid":"PBO:0056055"}


id: GO:1905594
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to resveratrol.","definition_xrefs":["PMID:18254726","GO_REF:0000067","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"resveratrol binding","termid":"GO:1905594"}


id: GO:0034364
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process.","definition_xrefs":["GOC:mah","GOC:pde","GOC:rl","GOC:expert_pt","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma lipoprotein particle","termid":"GO:0034358"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005576"],"is_obsolete":false,"name":"high-density lipoprotein particle","synonyms":[{"name":"HDL complex","type":"exact"},{"name":"HDL particle","type":"exact"},{"name":"HDL2","type":"related"},{"name":"HDL3","type":"related"},{"name":"high-density lipoprotein class complex","type":"exact"}],"termid":"GO:0034364"}


id: MOD:00015
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-glutamic acid.","definition_xrefs":["PubMed:6692818","PubMed:957425","RESID:AA0006","PubMed:1881881","PubMed:4565668","PubMed:9326660","DeltaMass:0","PubMed:4922541","ChEBI:29972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamic acid residue","synonyms":[{"name":"(2S)-2-aminopentanedioic acid","type":"exact"},{"name":"1-aminopropane-1,3-dicarboxylic acid","type":"exact"},{"name":"2-aminoglutaric acid","type":"exact"},{"name":"2-azanylpentanedioic acid","type":"exact"},{"name":"Glu","type":"exact"},{"name":"L-glutamic acid","type":"exact"},{"name":"alpha-aminoglutaric acid","type":"exact"},{"name":"glutaminic acid","type":"exact"}],"termid":"MOD:00015"}


id: MONDO:0700068
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any myopathy in which the cause of the disease is a variation in the POMGNT1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"myopathy","termid":"MONDO:0005336"},{"relation_name":"is_a","term_name":"disorder of protein O-glycosylation","termid":"MONDO:0017741"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"},{"relation_name":"is_a","term_name":"hereditary skeletal muscle disorder","termid":"MONDO:0700223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005336","MONDO:0002320","MONDO:0005066"],"is_obsolete":false,"name":"myopathy caused by variation in POMGNT1","synonyms":[{"name":"POMGNT1 myopathy","type":"exact"},{"name":"POMGNT1-related myopathy","type":"exact"},{"name":"myopathy caused by mutation in POMGNT1","type":"exact"}],"termid":"MONDO:0700068","xrefs":{"Monarch":{"xref_id":"0700068"}}}


id: PBO:0079688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UbiA prenyltransferase domain containing 1","termid":"PBO:0079688"}


id: PBO:0114434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine sensor upstream of mTORC1","termid":"PBO:0114434"}


id: PBO:0056555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCM3AP antisense RNA 1","termid":"PBO:0056555"}


id: PBO:0084434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAL-activator protein; part of complex locus MAL3; nonfunctional in genomic reference strain S288C","termid":"PBO:0084434"}


id: GO:0070368
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of hepatocyte differentiation.","definition_xrefs":["GOC:mah","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of epithelial cell differentiation","termid":"GO:0030858"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of hepatocyte differentiation","termid":"GO:0070366"},{"relation_name":"positively_regulates","term_name":"hepatocyte differentiation","termid":"GO:0070365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hepatocyte differentiation","synonyms":[{"name":"activation of hepatocyte differentiation","type":"narrow"},{"name":"positive regulation of liver cell differentiation","type":"exact"},{"name":"stimulation of hepatocyte differentiation","type":"narrow"},{"name":"up regulation of hepatocyte differentiation","type":"exact"},{"name":"up-regulation of hepatocyte differentiation","type":"exact"},{"name":"upregulation of hepatocyte differentiation","type":"exact"}],"termid":"GO:0070368"}


id: PBO:0001746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium ion transporter Trk1","termid":"PBO:0001746"}


id: SO:0001033
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"DNA belonging to the genome of a chloroplast, a photosynthetic plastid.","direct_ancestors":[{"relation_name":"has_quality","term_name":"DNA","termid":"SO:0000352"},{"relation_name":"is_a","term_name":"chloroplast_sequence","termid":"SO:0000745"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chloroplast_DNA","synonyms":[{"name":"chloroplast DNA","type":"exact"}],"termid":"SO:0001033"}


id: PBO:0061806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"outer dense fiber of sperm tails 3 like 2","termid":"PBO:0061806"}


id: GO:0102340
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (R)-3-hydroxybehenoyl-CoA(4-) + NADP(3-) = 3-oxodocosanoyl-CoA + NADPH + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-behenoyl-CoA reductase activity (obsolete GO:0102340)","termid":"GO:0102340"}


id: MONDO:0008980
data:
  {"annotated_genes":["SJAG_04110"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86827],"is_not":false,"summary":null,"term":"MONDO:0008980"}]},"cv_name":"mondo","definition":"Ataxia-hypogonadism-choroidal dystrophy syndrome is a very rare autosomal recessive, slowly progressive neurodegenerative disorder characterized by the triad of cerebellar ataxia (that generally manifests at adolescence or early adulthood), chorioretinal dystrophy, which may have a later onset (up to the fifth-sixth decade) leading to variable degrees of visual impairment, and hypogonadotropic hypogonadism (delayed puberty and lack of secondary sex characteristics). Ataxia-hypogonadism-choroidal dystrophy syndrome belongs to a clinical continuum of neurodegenerative disorders along with the clinically overlapping cerebellar ataxia-hypogonadism syndrome.","definition_xrefs":["Orphanet:1180"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hypogonadotropic hypogonadism","termid":"MONDO:0015770"},{"relation_name":"is_a","term_name":"hereditary ataxia","termid":"MONDO:0100309"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04110":null},"genotype_count":0,"is_obsolete":false,"name":"ataxia-hypogonadism-choroidal dystrophy syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:715984007","MESH:C565850","OMIM:215470","DOID:0111265","UMLS:C1859093","GARD:944","MEDGEN:347798"],"synonyms":[{"name":"BNHS","type":"exact"},{"name":"Boucher-Neuhauser syndrome","type":"exact"},{"name":"Boucher-Neuhchäuser syndrome","type":"exact"},{"name":"Boucher-Neuhäuser syndrome","type":"exact"},{"name":"ataxia - hypogonadism - choroidal dystrophy","type":"related"},{"name":"chorioretinal dystrophy, spinocerebellar ataxia and hypogonadotropic hypogonadism","type":"exact"},{"name":"spinocerebellar ataxia, hypogonadotropic hypogonadism, and chorioretinal dystrophy","type":"exact"}],"termid":"MONDO:0008980","terms_by_termid":{"MONDO:0008980":null},"xrefs":{"Monarch":{"xref_id":"0008980"}}}


id: GO:0150013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of the process in which the anatomical structures of a neuron projection are generated and organized into branches.","definition_xrefs":["GOC:aruk","PMID:17114044","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell projection organization","termid":"GO:0031345"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of neuron projection arborization","termid":"GO:0150011"},{"relation_name":"negatively_regulates","term_name":"neuron projection arborization","termid":"GO:0140058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neuron projection arborization","synonyms":[{"name":"negative regulation of neurite arborization","type":"exact"},{"name":"negative regulation of neurite branching","type":"exact"},{"name":"negative regulation of neuron projection branching","type":"exact"}],"termid":"GO:0150013"}


id: PBO:0088494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha amylase","termid":"PBO:0088494"}


id: MONDO:0002857
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant soft tissue neoplasm that arises from the gallbladder. Representative examples include Kaposi sarcoma, leiomyosarcoma, and rhabdomyosarcoma.","definition_xrefs":["NCIT:C5736"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gallbladder cancer","termid":"MONDO:0005411"},{"relation_name":"is_a","term_name":"soft tissue sarcoma","termid":"MONDO:0018078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"gallbladder sarcoma","secondary_identifiers":["MEDGEN:232227","DOID:4058","UMLS:C1333757"],"synonyms":[{"name":"gall bladder sarcoma","type":"exact"},{"name":"gallbladder sarcoma","type":"exact"},{"name":"malignant mesenchymal tumor of gallbladder","type":"exact"},{"name":"malignant mesenchymal tumour of gallbladder","type":"exact"},{"name":"sarcoma of gall bladder","type":"exact"},{"name":"sarcoma of gallbladder","type":"exact"},{"name":"sarcoma of the gallbladder","type":"exact"}],"termid":"MONDO:0002857","xrefs":{"Monarch":{"xref_id":"0002857"}}}


id: PBO:0045530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DTX2 pseudogene 1","termid":"PBO:0045530"}


id: PR:Q9P7M5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An H/ACA ribonucleoprotein complex subunit 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR13305:SF0","PRO:DNx","OMA:SCHPO00663"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H/ACA ribonucleoprotein complex subunit 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP27G11.13c","secondary_identifiers":["UniProtKB:Q9P7M5"],"synonyms":[{"name":"Spom972h-NOP10","type":"exact"},{"name":"nucleolar protein 10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"nucleolar protein family A member 3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"snoRNP protein nop10 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7M5"}


id: PBO:0041199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BUD23 rRNA methyltransferase and ribosome maturation factor","termid":"PBO:0041199"}


id: GO:1903640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of gastrin-induced gastric acid secretion.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:11123201"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gastric acid secretion","termid":"GO:0060455"},{"relation_name":"is_a","term_name":"regulation of gastrin-induced gastric acid secretion","termid":"GO:1903639"},{"relation_name":"negatively_regulates","term_name":"gastrin-induced gastric acid secretion","termid":"GO:0001698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of gastrin-induced gastric acid secretion","synonyms":[{"name":"down regulation of gastrin-induced gastric acid secretion","type":"exact"},{"name":"down-regulation of gastrin-induced gastric acid secretion","type":"exact"},{"name":"downregulation of gastrin-induced gastric acid secretion","type":"exact"},{"name":"inhibition of gastrin-induced gastric acid secretion","type":"narrow"}],"termid":"GO:1903640"}


id: PATO:0001243
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of blue hue and high brightness.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blue","termid":"PATO:0000318"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"light blue","termid":"PATO:0001243"}


id: FYPO:0006767
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a cyclin-dependent protein kinase activity is increased during the meiotic cell cycle, in cells that have not arrested the meiotic cell cycle under conditions that normally trigger meiotic DNA replication checkpoint signaling and response.","definition_xrefs":["PomBase:mah","PMID:10521402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cyclin-dependent protein kinase activity","termid":"FYPO:0004319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000654","FYPO:0001985","FYPO:0000661"],"is_obsolete":false,"name":"increased cyclin-dependent protein kinase activity in absence of meiotic DNA replication checkpoint arrest","synonyms":[{"name":"increased cyclin-dependent protein kinase activity with abolished meiotic DNA replication checkpoint arrest","type":"exact"}],"termid":"FYPO:0006767"}


id: PBO:0005358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle checkpoint protein Mad3","termid":"PBO:0005358"}


id: PBO:0082414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bifunctional chorismate synthase and flavin reductase; catalyzes the conversion of 5-enolpyruvylshikimate 3-phosphate (EPSP) to form chorismate, which is a precursor to aromatic amino acids; protein abundance increases in response to DNA replication stress","termid":"PBO:0082414"}


id: PBO:0053521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 515","termid":"PBO:0053521"}


id: RO:0002510
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x is transcribed from y if and only if x is synthesized from template y","direct_ancestors":[{"relation_name":"is_a","term_name":"genomically_related_to","termid":"RO:0002330"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcribed_from","termid":"RO:0002510"}


id: MONDO:0700130
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A chromosomal disorder consisting of the partial duplication of chromosome 21.","definition_xrefs":["PMID:29218069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal duplication","termid":"MONDO:0000762"},{"relation_name":"is_a","term_name":"Down syndrome","termid":"MONDO:0008608"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial segmental duplication","synonyms":[{"name":"partial trisomy 21","type":"exact"},{"name":"segmental duplication","type":"broad"}],"termid":"MONDO:0700130","xrefs":{"Monarch":{"xref_id":"0700130"}}}


id: PBO:0045971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"early growth response 4","termid":"PBO:0045971"}


id: FYPO:0000997
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is shaped in the form of a pear when the cell is subject to nitrogen starvation. One end is rounded, while the other resembles an end of a normal rod-shaped cell. The normally shaped end has the same diameter as a wild-type cell.","definition_xrefs":["PomBase:mah","PMID:19366728"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pear-shaped cell","termid":"FYPO:0000020"},{"relation_name":"is_a","term_name":"abnormal cell morphology during nitrogen starvation","termid":"FYPO:0000995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"pear-shaped cell during nitrogen starvation","synonyms":[{"name":"cell morphology, pear shaped during nitrogen starvation","type":"exact"},{"name":"ice cream cone-shaped cell during nitrogen starvation","type":"exact"},{"name":"pear-shaped cell during nitrogen depletion","type":"exact"},{"name":"pear-shaped cell during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0000997"}


id: RO:0002609
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"related_via_dependence_to","termid":"RO:0002609"}


id: GO:0051161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving arabitol, the pentitol derived from arabinose or lyxose by reduction of the aldehyde group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentitol metabolic process","termid":"GO:0019519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"arabitol metabolic process","synonyms":[{"name":"arabitol metabolism","type":"exact"}],"termid":"GO:0051161"}


id: GO:0004780
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ADP + H+ + sulfate = 5'-adenylyl sulfate + phosphate.","definition_xrefs":["RHEA:16529","EC:2.7.7.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate adenylyltransferase activity","termid":"GO:0004779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016779","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"sulfate adenylyltransferase (ADP) activity","secondary_identifiers":["MetaCyc:SULFATE-ADENYLYLTRANSFERASE-ADP-RXN","KEGG_REACTION:R00530"],"synonyms":[{"name":"ADP-sulfurylase activity","type":"related"},{"name":"ADP:sulfate adenylyltransferase activity","type":"exact"},{"name":"adenosine diphosphate sulfurylase activity","type":"related"},{"name":"sulfate (adenosine diphosphate) adenylyltransferase activity","type":"related"},{"name":"sulphate adenylyltransferase (ADP) activity","type":"exact"}],"termid":"GO:0004780"}


id: MONDO:0005227
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory process characterized by the accumulation of pus within a newly formed tissue cavity which is the result of a bacterial, fungal, or parasitic infection or the presence of a foreign body.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"bacterial infectious disease","termid":"MONDO:0005113"},{"relation_name":"is_a","term_name":"infectious disease","termid":"MONDO:0005550"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abscess","secondary_identifiers":["ICD9:682.9","SCTID:128477000","Wikipedia:Abscess","MESH:D000038","NCIT:C26686","UMLS:C0000833","EFO:0003030","ICD9:682.8","MEDGEN:1684"],"synonyms":[{"name":"abscess (disease)","type":"exact"}],"termid":"MONDO:0005227","xrefs":{"Monarch":{"xref_id":"0005227"}}}


id: PBO:0113178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Killer toxin defense factor; key polymorphic factor in the defense against K28 toxin; localizes mainly to vacuolar membrane; most likely acts against K28 during its trafficking after endocytosis; member of DUP240 gene family","termid":"PBO:0113178"}


id: PBO:0065701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purine rich element binding protein G","termid":"PBO:0065701"}


id: FYPO:0002234
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more sterol esters measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular sterol ester level","synonyms":[{"name":"decreased cellular sterol ester level during mitotic cell cycle","type":"related"},{"name":"decreased cellular sterol ester level during vegetative growth","type":"exact"},{"name":"decreased level of sterol ester in cell","type":"exact"},{"name":"decreased sterol ester accumulation","type":"related"},{"name":"reduced cellular sterol ester level","type":"exact"},{"name":"reduced level of sterol ester in cell","type":"exact"}],"termid":"FYPO:0002234"}


id: GO:0070472
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of uterine smooth muscle contraction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of smooth muscle contraction","termid":"GO:0006940"},{"relation_name":"regulates","term_name":"uterine smooth muscle contraction","termid":"GO:0070471"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of uterine smooth muscle contraction","synonyms":[{"name":"regulation of myometrial contraction","type":"exact"},{"name":"regulation of myometrial smooth muscle contraction","type":"exact"},{"name":"regulation of myometrium contraction","type":"exact"}],"termid":"GO:0070472"}


id: FYPO:0001901
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cytoplasmic mRNA processing bodies (P-bodies) are smaller than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"small P-bodies","termid":"FYPO:0001900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"small P-bodies during vegetative growth","synonyms":[{"name":"decreased P-body formation during vegetative growth","type":"related"},{"name":"small P bodies during vegetative growth","type":"exact"},{"name":"small P-bodies during mitotic cell cycle","type":"related"},{"name":"small P-body during vegetative growth","type":"exact"},{"name":"small cytoplasmic mRNA processing bodies during vegetative growth","type":"exact"}],"termid":"FYPO:0001901"}


id: GO:0051131
data:
  {"annotated_genes":["SJAG_00984","SJAG_01545","SJAG_03784"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76007,76483,78173],"is_not":false,"summary":null,"term":"GO:0051131"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00984":null,"SJAG_01545":null,"SJAG_03784":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"chaperone-mediated protein complex assembly","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0034619"],"synonyms":[{"name":"cellular chaperone-mediated protein complex assembly","type":"exact"},{"name":"chaperone activity","type":"related"},{"name":"protein complex assembly, multichaperone pathway","type":"exact"}],"termid":"GO:0051131","terms_by_termid":{"GO:0051131":null}}


id: PBO:0000297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone fold","termid":"PBO:0000297"}


id: FYPO:0003800
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) in a mutant is normal (i.e. indistinguishable from wild type) at an origin of replication.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal chromatin binding","termid":"FYPO:0003086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000702","FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal chromatin binding at replication origin","synonyms":[{"name":"normal chromatin binding at origin of replication","type":"exact"}],"termid":"FYPO:0003800"}


id: PBO:0004315
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.5.1.48","termid":"PBO:0004315"}


id: GO:0016996
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of (2->8)-alpha-sialosyl linkages in oligo- or poly(sialic) acids.","definition_xrefs":["EC:3.2.1.129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-sialidase activity","termid":"GO:0016997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"endo-alpha-(2,8)-sialidase activity","secondary_identifiers":["MetaCyc:3.2.1.129-RXN"],"synonyms":[{"name":"alpha-2,8-sialosylhydrolase activity","type":"related"},{"name":"endo-N-acetylneuraminidase activity","type":"related"},{"name":"endo-N-acylneuraminidase activity","type":"related"},{"name":"endoneuraminidase activity","type":"related"},{"name":"endosialidase activity","type":"related"},{"name":"poly(alpha-2,8-sialoside) alpha-2,8-sialosylhydrolase activity","type":"related"},{"name":"poly(alpha-2,8-sialosyl) endo-N-acetylneuraminidase activity","type":"related"},{"name":"polysialoside (2->8)-alpha-sialosylhydrolase activity","type":"related"}],"termid":"GO:0016996"}


id: PBO:0066461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REX4 homolog, 3'-5' exonuclease","termid":"PBO:0066461"}


id: PBO:0061568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-terminal asparagine amidase pseudogene 2","termid":"PBO:0061568"}


id: PBO:0081164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger TRAF-type containing 1","termid":"PBO:0081164"}


id: GO:1902366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of Notch signaling pathway involved in somitogenesis.","definition_xrefs":["GOC:dph","GOC:TermGenie","PMID:21795391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Notch signaling pathway","termid":"GO:0008593"},{"relation_name":"regulates","term_name":"Notch signaling pathway involved in somitogenesis","termid":"GO:1902359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of Notch signaling pathway involved in somitogenesis","synonyms":[{"name":"regulation of N signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"regulation of N signaling pathway involved in somitogenesis","type":"exact"},{"name":"regulation of N signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"regulation of N signalling pathway involved in somitogenesis","type":"exact"},{"name":"regulation of Notch receptor signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"regulation of Notch receptor signaling pathway involved in somitogenesis","type":"exact"},{"name":"regulation of Notch receptor signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"regulation of Notch receptor signalling pathway involved in somitogenesis","type":"exact"},{"name":"regulation of Notch signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"regulation of Notch signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"regulation of Notch signalling pathway involved in somitogenesis","type":"exact"},{"name":"regulation of Notch-receptor signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"regulation of Notch-receptor signaling pathway involved in somitogenesis","type":"exact"},{"name":"regulation of Notch-receptor signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"regulation of Notch-receptor signalling pathway involved in somitogenesis","type":"exact"}],"termid":"GO:1902366"}


id: PBO:0058490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5684","termid":"PBO:0058490"}


id: PBO:0066149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBBP4 pseudogene 5","termid":"PBO:0066149"}


id: PBO:0074760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 119","termid":"PBO:0074760"}


id: MONDO:0006379
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pleural mesothelioma (obsolete MONDO:0006379)","synonyms":[{"name":"obsolete pleural mesothelioma (disease)","type":"exact"}],"termid":"MONDO:0006379","xrefs":{"Monarch":{"xref_id":"0006379"}}}


id: PBO:0087975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region; inhibition of Tpi1p activity by PEP (phosphoenolpyruvate) stimulates redox metabolism in respiring cells; E104D mutation in human homolog TPI1 causes a rare autosomal disease; human TPI1 can complement yeast null mutant","termid":"PBO:0087975"}


id: PBO:0024868
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pediatric medulloblastoma","termid":"PBO:0024868"}


id: PBO:0058436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5000","termid":"PBO:0058436"}


id: PBHQ:002
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_has_qualifier_range","direct_ancestors":[{"relation_name":"is_a","term_name":"has_qualifier_range","termid":"PBHQ:001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOT","termid":"PBHQ:002"}


id: MONDO:0012743
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Brugada syndrome in which the cause of the disease is a mutation in the CACNB2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Brugada syndrome","termid":"MONDO:0015263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Brugada syndrome 4","secondary_identifiers":["GARD:10362","MEDGEN:395632","OMIM:611876","MESH:C567508","UMLS:C2678477","DOID:0110221"],"synonyms":[{"name":"BRGDA4","type":"exact"},{"name":"Brugada syndrome 4","type":"exact"},{"name":"Brugada syndrome caused by mutation in CACNB2","type":"exact"},{"name":"Brugada syndrome type 4","type":"exact"},{"name":"CACNB2 Brugada syndrome","type":"exact"}],"termid":"MONDO:0012743","xrefs":{"Monarch":{"xref_id":"0012743"}}}


id: MONDO:0004770
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The anterior displacement of the eye within the orbit, giving a bulging appearance.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"exophthalmos","secondary_identifiers":["MEDGEN:41917","SCTID:18265008","NCIT:C118763","DOID:9370","ICD9:376.30","UMLS:C0015300","MESH:D005094","HP:0000520"],"synonyms":[{"name":"exophthalmos","type":"exact"},{"name":"exophthalmos (disease)","type":"exact"},{"name":"proptosis","type":"exact"}],"termid":"MONDO:0004770","xrefs":{"Monarch":{"xref_id":"0004770"}}}


id: FYPO:0005542
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which telomerase template activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA binding","termid":"FYPO:0000656"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000653","FYPO:0001985","FYPO:0000652","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal telomerase template activity","synonyms":[{"name":"abnormal telomerase RNA activity","type":"exact"},{"name":"abnormal template for synthesis of G-rich strand of telomere DNA activity","type":"exact"}],"termid":"FYPO:0005542"}


id: MONDO:1011231
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Entropion that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"entropion, non-human animal","termid":"MONDO:1010323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"entropion, sheep","secondary_identifiers":["OMIA:000337-9940"],"termid":"MONDO:1011231","xrefs":{"Monarch":{"xref_id":"1011231"}}}


id: GO:1905912
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of calcium ion export across the plasma membrane.","definition_xrefs":["GOC:BHF","GOC:BHF_miRNA","GOC:rph","PMID:22362515","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of calcium ion transmembrane transport","termid":"GO:1903169"},{"relation_name":"regulates","term_name":"calcium ion export across plasma membrane","termid":"GO:1990034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of calcium ion export across plasma membrane","synonyms":[{"name":"regulation of calcium ion efflux from cell","type":"exact"},{"name":"regulation of calcium ion export from cell","type":"exact"}],"termid":"GO:1905912"}


id: PBO:0004704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme Ubc8 (predicted)","termid":"PBO:0004704"}


id: PBO:0089407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, membrane-tethered","termid":"PBO:0089407"}


id: PBO:0085727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in the nonsense-mediated mRNA decay (NMD) pathway; interacts with Nam7p and Upf3p; involved in telomere maintenance","termid":"PBO:0085727"}


id: PBO:0086745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; potential Cdc28p substrate","termid":"PBO:0086745"}


id: PBO:0079990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 28","termid":"PBO:0079990"}


id: GO:2001296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving N(omega)-methyl-L-arginine.","definition_xrefs":["GOC:rs","PMID:10510241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"N(omega)-methyl-L-arginine metabolic process","synonyms":[{"name":"N(omega)-methyl-L-arginine metabolism","type":"exact"}],"termid":"GO:2001296"}


id: GO:0072058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the outer stripe over time, from its formation to the mature structure. The outer stripe is the region of the kidney outer medulla that lies just below the cortex. The proximal straight tubules (S3) characterize this region.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"renal outer medulla development","termid":"GO:0072054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"outer stripe development","termid":"GO:0072058"}


id: PBO:0059483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine sulfoxide reductase A","termid":"PBO:0059483"}


id: GO:0016934
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a chloride ion by a channel that opens when glycine is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inhibitory extracellular ligand-gated monoatomic ion channel activity","termid":"GO:0005237"},{"relation_name":"is_a","term_name":"chloride channel activity","termid":"GO:0005254"},{"relation_name":"is_a","term_name":"extracellularly glycine-gated ion channel activity","termid":"GO:0016933"},{"relation_name":"is_a","term_name":"ligand-gated monoatomic anion channel activity","termid":"GO:0099095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"extracellularly glycine-gated chloride channel activity","secondary_identifiers":["Reactome:R-HSA-975389","GO:0004891"],"synonyms":[{"name":"extracellular-glycine-gated chloride channel activity","type":"exact"},{"name":"glycine receptor","type":"broad"},{"name":"glycine-inhibited chloride channel activity","type":"related"}],"termid":"GO:0016934"}


id: PBO:0084354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-azetidine-2-carboxylic acid acetyltransferase; reduces intracellular ROS, contributes to L-proline analog resistance and tolerance to ethanol and freezing; member of N-acetyltransferase superfamily; not found in S288C, present in strains with Sigma1278b background; located on left arm of Chr X ~ 15 kb from telomere; identical to MPR1 except for one base at position 254, leading to Gly at position 85 in MPR1 and Glu in MPR2; present also in Japanese industrial baker's yeast","termid":"PBO:0084354"}


id: MONDO:0020052
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete partial autosomal trisomy/tetrasomy (obsolete MONDO:0020052)","secondary_identifiers":["Orphanet:98132"],"termid":"MONDO:0020052","xrefs":{"Monarch":{"xref_id":"0020052"}}}


id: GO:0060166
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of the olfactory pit from an initial condition to its mature state. This process begins with the formation of the olfactory pit, which is an indentation of the olfactory placode, and ends when the pits hollows out to form the nasopharynx.","definition_xrefs":["GOC:dph","ISBN:0124020607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"nose development","termid":"GO:0043584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olfactory pit development","termid":"GO:0060166"}


id: PBO:0036432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endosomal and vacuolar ubiquitin-protein ligase E3/phosphatidylinositol(3)-phosphate binding protein (predicted)","termid":"PBO:0036432"}


id: PBO:0086585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; encoded opposite a Ty1 LTR","termid":"PBO:0086585"}


id: GO:0070224
data:
  {"annotated_genes":["SJAG_02599"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76135],"is_not":false,"summary":null,"term":"GO:0070224"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: H2S (hydrogen sulfide) + a quinone = S0 (sulfane sulfur) + a hydroquinone.","definition_xrefs":["RHEA:30239"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor","termid":"GO:0016672"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02599":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"sulfide:quinone oxidoreductase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-1614665","MetaCyc:R17-RXN"],"synonyms":[{"name":"sulfide-quinone reductase activity","type":"exact"},{"name":"sulphide:quinone oxidoreductase activity","type":"exact"}],"termid":"GO:0070224","terms_by_termid":{"GO:0070224":null}}


id: PBO:0000433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLI interacting factor family phosphatase (predicted)","termid":"PBO:0000433"}


id: PBO:0067361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 460, pseudogene","termid":"PBO:0067361"}


id: SO:0000815
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"By definition, minigenes are short open-reading frames (ORF), usually encoding approximately 9 to 20 amino acids, which are expressed in vivo (as distinct from being synthesized as peptide or protein ex vivo and subsequently injected). The in vivo synthesis confers a distinct advantage: the expressed sequences can enter both antigen presentation pathways, MHC I (inducing CD8+ T- cells, which are usually cytotoxic T-lymphocytes (CTL)) and MHC II (inducing CD4+ T-cells, usually 'T-helpers' (Th)); and can encounter B-cells, inducing antibody responses. Three main vector approaches have been used to deliver minigenes: viral vectors, bacterial vectors and plasmid DNA.","definition_xrefs":["PMID:15992143"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ORF","termid":"SO:0000236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mini_gene","synonyms":[{"name":"mini gene","type":"exact"}],"termid":"SO:0000815"}


id: MONDO:0100327
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of bile acid synthesis","termid":"MONDO:0019218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"hypercholanemia, familial","secondary_identifiers":["UMLS:C1843139","MEDGEN:334689","OMIMPS:607748"],"synonyms":[{"name":"familial hypercholanemia","type":"exact"},{"name":"hypercholanemia, familial","type":"exact"}],"termid":"MONDO:0100327","xrefs":{"Monarch":{"xref_id":"0100327"}}}


id: MONDO:0003511
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete testicular germ cell cancer (obsolete MONDO:0003511)","termid":"MONDO:0003511","xrefs":{"Monarch":{"xref_id":"0003511"}}}


id: GO:0045316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of compound eye photoreceptor development.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of eye photoreceptor cell development","termid":"GO:0042480"},{"relation_name":"is_a","term_name":"regulation of compound eye photoreceptor development","termid":"GO:0045314"},{"relation_name":"negatively_regulates","term_name":"compound eye photoreceptor development","termid":"GO:0042051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of compound eye photoreceptor development","synonyms":[{"name":"down regulation of eye photoreceptor development","type":"broad"},{"name":"down-regulation of eye photoreceptor development","type":"broad"},{"name":"downregulation of eye photoreceptor development","type":"broad"},{"name":"inhibition of eye photoreceptor development","type":"broad"},{"name":"negative regulation of eye photoreceptor development","type":"broad"}],"termid":"GO:0045316"}


id: PBO:0090816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial iron-sulfur cluster protein, implicated in respiratory complex assembly","termid":"PBO:0090816"}


id: PBO:0030318
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_oleoyl-CoA_ligase_activity","termid":"PBO:0030318"}


id: MONDO:0017804
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive leukoencephalopathy-ischemic stroke-retinitis pigmentosa syndrome is a rare neurologic disease characterized by global developmental delay, intellectual disability, multiple ischemic lesions in brain MRI, behavioral abnormalities, dystonia, choreic movements and pyramidal syndrome, facial dysmorphism (hypertelorism, arched palate, macroglossia), retinitis pigmentosa, scoliosis, seizures.","definition_xrefs":["Orphanet:314572"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autosomal recessive leukoencephalopathy-ischemic stroke-retinitis pigmentosa syndrome","secondary_identifiers":["GARD:21378","MEDGEN:1654941","UMLS:C4749919"],"termid":"MONDO:0017804","xrefs":{"Monarch":{"xref_id":"0017804"}}}


id: GO:0007147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the second meiotic division occurs in the female germline.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis II","termid":"GO:0007135"},{"relation_name":"is_a","term_name":"female meiotic nuclear division","termid":"GO:0007143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0140013","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"female meiosis II","synonyms":[{"name":"female meiosis II nuclear division","type":"exact"}],"termid":"GO:0007147"}


id: PBO:0054624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2029","termid":"PBO:0054624"}


id: GO:0039666
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which a virion attaches to a host cell by binding to a pilus on the host cell surface. Pili are retractile filaments that protrude from gram-negative bacteria. Filamentous viruses can attach to the pilus tip, whereas icosahedral viruses can attach to the pilus side.","definition_xrefs":["UniProtKB-KW:KW-1175","VZ:981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion attachment to host cell","termid":"GO:0019062"},{"relation_name":"part_of","term_name":"symbiont entry into host cell","termid":"GO:0046718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"virion attachment to host cell pilus","synonyms":[{"name":"pilus-adsorption protein","type":"exact"},{"name":"pilus-mediated viral adsorption onto host cell","type":"related"},{"name":"pilus-mediated viral attachment to host cell","type":"related"},{"name":"viral attachment to host cell pilus","type":"related"}],"termid":"GO:0039666"}


id: PR:Q10332
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC582.10c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10332"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized ATP-dependent helicase C582.10c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC582.10c","synonyms":[{"name":"Spom972h-SPBC582.10c","type":"exact"}],"termid":"PR:Q10332"}


id: GO:1990934
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A nuclear compartment containing significant amounts of non-nucleolar, spliceosomal components. It is commonly found in germinal vesicle (GV) stage oocytes, and is similar to both nucleoli and sphere organelles.","definition_xrefs":["PMID:26226217","PMID:9021878"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membraneless organelle","termid":"GO:0043232"},{"relation_name":"part_of","term_name":"nuclear lumen","termid":"GO:0031981"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"nucleolus-like body","synonyms":[{"name":"NLB","type":"exact"},{"name":"compact nucleolus","type":"exact"}],"termid":"GO:1990934"}


id: PBO:0041352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C4A (Rodgers blood group)","termid":"PBO:0041352"}


id: PBO:0046596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K3 member 6","termid":"PBO:0046596"}


id: GO:0070901
data:
  {"annotated_genes":["SJAG_00255"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78059],"is_not":false,"summary":null,"term":"GO:0070901"}]},"cv_name":"biological_process","definition":"The posttranscriptional addition of methyl groups to specific residues in a mitochondrial tRNA molecule.","definition_xrefs":["GOC:mcc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA methylation","termid":"GO:0030488"},{"relation_name":"is_a","term_name":"mitochondrial tRNA modification","termid":"GO:0070900"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00255":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006399","GO:0010467","GO:0008150","GO:0140053"],"is_obsolete":false,"name":"mitochondrial tRNA methylation","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0070901","terms_by_termid":{"GO:0070901":null}}


id: GO:0180014
data:
  {"annotated_genes":["SJAG_03629","SJAG_01638"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97220,107337],"is_not":false,"summary":null,"term":"GO:0180014"}]},"cv_name":"molecular_function","definition":"The binding activity of a protein that brings together another protein and a tRNA, permitting those molecules to function in a coordinated way.","definition_xrefs":["PMID:31048492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA adaptor activity","termid":"GO:0140517"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01638":null,"SJAG_03629":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0003674","GO:0060090","GO:0030674"],"is_obsolete":false,"name":"protein-tRNA adaptor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"tRNA carrier","type":"related"}],"termid":"GO:0180014","terms_by_termid":{"GO:0180014":null}}


id: PBO:0070597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 64","termid":"PBO:0070597"}


id: MONDO:0001644
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the glomeruli status post infection with nephritogenic streptococci, most often group A beta hemolytic streptococcus.","definition_xrefs":["NCIT:C35443"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proliferative glomerulonephritis","termid":"MONDO:0003134"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"acute proliferative glomerulonephritis","secondary_identifiers":["DOID:13138","SCTID:197579006","ICD9:580.0","MEDGEN:574582","UMLS:C0341692"],"synonyms":[{"name":"acute glomerulonephritis with lesion of proliferative glomerulonephritis","type":"exact"},{"name":"post-streptococcal glomerulonephritis","type":"exact"},{"name":"proliferative glomerulonephritis, acute","type":"exact"}],"termid":"MONDO:0001644","xrefs":{"Monarch":{"xref_id":"0001644"}}}


id: GO:0006083
data:
  {"annotated_genes":["SJAG_01989","SJAG_02769","SJAG_02741","SJAG_03786","SJAG_02985"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76747,114362],"is_not":false,"summary":null,"term":"GO:0006083"},{"annotations":[100867],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019413"},{"annotations":[68440,91405],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019427"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving acetate, the anion of acetic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01989":null,"SJAG_02741":null,"SJAG_02769":null,"SJAG_02985":null,"SJAG_03786":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"acetate metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"acetate metabolism","type":"exact"}],"termid":"GO:0006083","terms_by_termid":{"GO:0006083":null,"GO:0019413":null,"GO:0019427":null}}


id: MONDO:0001455
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral retinal degeneration","termid":"MONDO:0001451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"retinal lattice degeneration","secondary_identifiers":["SCTID:3577000","UMLS:C0154856","DOID:12165","ICD9:362.63","MEDGEN:102321"],"synonyms":[{"name":"palisade degeneration of retina","type":"exact"}],"termid":"MONDO:0001455","xrefs":{"Monarch":{"xref_id":"0001455"}}}


id: PATO:0002470
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other.","definition_xrefs":["PATOC:LC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphology","termid":"PATO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transformed to","termid":"PATO:0002470"}


id: FYPO:0005813
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to one or both ends of a microtubule is normal (i.e. indistinguishable from wild type) during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to microtubule cytoskeleton during mitotic interphase","termid":"FYPO:0003185"},{"relation_name":"is_a","term_name":"normal intracellular protein transport during vegetative growth","termid":"FYPO:0005397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000138","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to microtubule end during mitotic interphase","synonyms":[{"name":"normal protein localisation to microtubule end during mitotic interphase","type":"exact"},{"name":"normal protein localization to microtubule end during interphase during vegetative growth","type":"exact"},{"name":"normal protein localization to microtubule end during interphase of mitotic cell cycle","type":"exact"}],"termid":"FYPO:0005813"}


id: MONDO:0014616
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Skint1-like pseudogene (obsolete MONDO:0014616)","secondary_identifiers":["OMIM:616392"],"synonyms":[{"name":"SKINT1-like pseudogene","type":"related"},{"name":"SKINTL","type":"related"},{"name":"Skint1-like pseudogene","type":"exact"},{"name":"Skint1L","type":"related"},{"name":"Skintp","type":"related"}],"termid":"MONDO:0014616","xrefs":{"Monarch":{"xref_id":"0014616"}}}


id: MONDO:0020621
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood group--scianna system (obsolete MONDO:0020621)","secondary_identifiers":["OMIM:111750"],"synonyms":[{"name":"BLOOD GROUP--SCIANNA SYSTEM","type":"related"},{"name":"SC","type":"related"},{"name":"Scianna Blood Group","type":"related"},{"name":"blood group, Scianna system","type":"exact"}],"termid":"MONDO:0020621","xrefs":{"Monarch":{"xref_id":"0020621"}}}


id: PBO:0065011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PR/SET domain 15","termid":"PBO:0065011"}


id: PBO:0055676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIPE antisense RNA 1","termid":"PBO:0055676"}


id: PBO:0016968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial proton-transporting ATP synthase complex assembly protein (predicted)","termid":"PBO:0016968"}


id: PR:Q9UTQ6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1502 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTQ6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S15-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1071.07c","synonyms":[{"name":"Spom972h-rps1502","type":"exact"}],"termid":"PR:Q9UTQ6"}


id: GO:0019650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic chemical reactions and pathways resulting in the breakdown of glucose into butanediol; effected by some members of the Enterobacteriaceae, e.g. Enterobacter, Erwinia, Klebsiella, and Serratia.","definition_xrefs":["GOC:nr","ISBN:0198506732","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucose metabolic process","termid":"GO:0006006"},{"relation_name":"is_a","term_name":"glycolytic fermentation","termid":"GO:0019660"},{"relation_name":"is_a","term_name":"butanediol metabolic process","termid":"GO:0034077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281","GO:0006091"],"is_obsolete":false,"name":"glycolytic fermentation to butanediol","secondary_identifiers":["Wikipedia:Butanediol_fermentation","GO:0030646"],"synonyms":[{"name":"butanediol fermentation","type":"exact"},{"name":"glucose catabolic process to butanediol","type":"exact"},{"name":"glucose fermentation to butanediol","type":"exact"}],"termid":"GO:0019650"}


id: MONDO:1012864
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A spongy encephalopathy that occurs in cats due to a mutation in the ASPA gene.","definition_xrefs":["PMID:33779415"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neurological disease, non-human animal","termid":"MONDO:1012972"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"encephalopathy, ASPA-related, domestic cat","secondary_identifiers":["OMIA:002325-9685"],"synonyms":[{"name":"feline spongy encephalopathy","type":"related"}],"termid":"MONDO:1012864","xrefs":{"Monarch":{"xref_id":"1012864"}}}


id: PBO:0078028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 18","termid":"PBO:0078028"}


id: MONDO:0010742
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pentalogy of Cantrell (POC) is a lethal multiple congenital anomalies syndrome, characterized by the presence of 5 major malformations: midline supraumbilical abdominal wall defect, lower sternal defect, diaphragmatic pericardial defect, anterior diaphragmatic defect and various intracardiac malformations. Ectopia cordis (EC) is often found in fetuses with POC.","definition_xrefs":["Orphanet:1335"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentalogy of Cantrell","secondary_identifiers":["MEDGEN:107540","NORD:1566","ICD9:759.89","SCTID:281587000","NCIT:C99011","UMLS:C0559483","OMIM:313850","MESH:D058502","GARD:7359"],"synonyms":[{"name":"Cantrell Haller Ravitsch syndrome","type":"related"},{"name":"Cantrell deformity","type":"exact"},{"name":"Cantrell pentalogy","type":"related"},{"name":"Cantrell syndrome","type":"exact"},{"name":"Midline defects, X-linked","type":"related"},{"name":"THAS","type":"related"},{"name":"Tas","type":"related"},{"name":"pentalogy of Cantrell","type":"exact"},{"name":"thoraco-abdominal syndrome","type":"exact"},{"name":"thoracoabdominal syndrome","type":"related"}],"termid":"MONDO:0010742","xrefs":{"Monarch":{"xref_id":"0010742"}}}


id: MONDO:0021138
data:
  {"annotated_genes":["SJAG_01349","SJAG_05979","SJAG_01013","SJAG_03453","SJAG_03905","SJAG_01748"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87167,87170,87322,87168,87323,87169],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018874"}]},"cv_name":"mondo","definition":"Malignant neoplasms that either originate from the bone marrow (e.g. myeloid leukemias) or involve the bone marrow as secondary-metastatic tumors (e.g. metastatic carcinomas to the bone marrow). --2003","definition_xrefs":["NCIT:C35501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"bone cancer","termid":"MONDO:0002129"},{"relation_name":"is_a","term_name":"bone marrow neoplasm","termid":"MONDO:0005374"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01013":null,"SJAG_01349":null,"SJAG_01748":null,"SJAG_03453":null,"SJAG_03905":null,"SJAG_05979":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"bone marrow cancer","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:438070","UMLS:C2703042"],"synonyms":[{"name":"bone marrow cancer","type":"exact"},{"name":"cancer of bone marrow","type":"exact"},{"name":"malignant bone marrow neoplasm","type":"exact"},{"name":"malignant bone marrow tumor","type":"exact"},{"name":"malignant bone marrow tumour","type":"exact"},{"name":"malignant neoplasm of bone marrow","type":"exact"}],"termid":"MONDO:0021138","terms_by_termid":{"MONDO:0018874":null},"xrefs":{"Monarch":{"xref_id":"0021138"}}}


id: PBO:0040593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BACH1 intronic transcript 3","termid":"PBO:0040593"}


id: GO:0046225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a bacteriocin, any of a heterogeneous group of polypeptide antibiotics that are secreted by certain bacterial strains and are able to kill cells of other susceptible (frequently related) strains after adsorption at specific receptors on the cell surface. They include the colicins, and their mechanisms of action vary.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toxin catabolic process","termid":"GO:0009407"},{"relation_name":"is_a","term_name":"peptide antibiotic catabolic process","termid":"GO:0030652"},{"relation_name":"is_a","term_name":"bacteriocin metabolic process","termid":"GO:0046224"},{"relation_name":"is_a","term_name":"detoxification of nitrogen compound","termid":"GO:0051410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0098754","GO:0008150","GO:0019748","GO:0044248"],"is_obsolete":false,"name":"bacteriocin catabolic process","synonyms":[{"name":"bacteriocin breakdown","type":"exact"},{"name":"bacteriocin catabolism","type":"exact"},{"name":"bacteriocin degradation","type":"exact"}],"termid":"GO:0046225"}


id: PBO:0084574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Membrane protein of unknown function; overexpression suppresses NaCl sensitivity of sro7 mutant cells by restoring sodium pump (Ena1p) localization to the plasma membrane","termid":"PBO:0084574"}


id: PBO:0108589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 13B","termid":"PBO:0108589"}


id: PATO:0002503
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterolaterally.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"posterolateral orientation","synonyms":[{"name":"posterolaterally directed","type":"exact"}],"termid":"PATO:0002503"}


id: PBO:0067913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 215","termid":"PBO:0067913"}


id: GO:0052660
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-propane-1,2-diol + NAD+ = (R)-lactaldehyde + NADH + H+.","definition_xrefs":["RHEA:23872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactaldehyde reductase activity","termid":"GO:0008912"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"R-lactaldehyde reductase activity","secondary_identifiers":["MetaCyc:RXN-8641","KEGG_REACTION:R03080"],"synonyms":[{"name":"(R)-propane-1,2-diol:NAD+ oxidoreductase activity","type":"related"},{"name":"D-lactaldehyde:propanediol oxidoreductase activity","type":"related"}],"termid":"GO:0052660"}


id: FYPO:0000440
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to antimycin A. Cells stop growing (and may die) at a concentration of antimycin A that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0005447","FYPO:0000003","FYPO:0002683","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to antimycin A","synonyms":[{"name":"hypersensitive to antimycin A","type":"exact"},{"name":"sensitive to antimycin A during mitotic cell cycle","type":"related"},{"name":"sensitive to antimycin A during vegetative growth","type":"exact"}],"termid":"FYPO:0000440"}


id: MONDO:0010108
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A germ cell tumor arising from the testis. Representative examples include teratoma, seminoma, embryonal carcinoma, and yolk sac tumor.","definition_xrefs":["NCIT:C8591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gonadal germ cell tumor","termid":"MONDO:0018202"},{"relation_name":"is_a","term_name":"neoplasm of testis","termid":"MONDO:0021348"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testicular germ cell tumor","secondary_identifiers":["DOID:5557","GARD:13047","MESH:C563236","OMIM:273300","ICD9:239.5","MEDGEN:277809","Orphanet:363504","UMLS:C1336708","SCTID:713577007","EFO:1000566"],"synonyms":[{"name":"Male germ cell tumor","type":"related"},{"name":"Male germ cell tumour","type":"related"},{"name":"TGCT","type":"exact"},{"name":"embryonal cell carcinoma","type":"related"},{"name":"endodermal sinus tumor","type":"related"},{"name":"endodermal sinus tumour","type":"related"},{"name":"germ cell neoplasm of testis","type":"exact"},{"name":"germ cell neoplasm of the testis","type":"exact"},{"name":"germ cell tumor of testis","type":"exact"},{"name":"germ cell tumor of the testis","type":"exact"},{"name":"germ cell tumors, somatic","type":"exact"},{"name":"germ cell tumour of testis","type":"exact"},{"name":"germ cell tumour of the testis","type":"exact"},{"name":"male germ cell tumor, somatic","type":"exact"},{"name":"nonseminomatous germ cell tumors","type":"related"},{"name":"nonseminomatous germ cell tumours","type":"related"},{"name":"seminoma","type":"related"},{"name":"spermatocytic seminoma","type":"related"},{"name":"spermatocytic seminoma, somatic","type":"exact"},{"name":"teratoma, testicular","type":"related"},{"name":"testicular germ cell cancer","type":"related"},{"name":"testicular germ cell neoplasm","type":"exact"},{"name":"testicular germ cell neoplasms","type":"exact"},{"name":"testicular germ cell tumor","type":"exact"},{"name":"testicular tumor, somatic","type":"exact"},{"name":"testis germ cell tumor","type":"exact"},{"name":"testis germ cell tumour","type":"exact"}],"termid":"MONDO:0010108","xrefs":{"Monarch":{"xref_id":"0010108"}}}


id: PBO:0044046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine and serine rich nuclear protein 3","termid":"PBO:0044046"}


id: MONDO:0010031
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neurocutaneous disorder caused by an inborn error of lipid metabolism and characterized by congenital ichthyosis, intellectual deficit, and spasticity.","definition_xrefs":["Orphanet:816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder","termid":"MONDO:0002051"},{"relation_name":"is_a","term_name":"eye degenerative disorder","termid":"MONDO:0004884"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"syndromic dyslipidemia","termid":"MONDO:0015905"},{"relation_name":"is_a","term_name":"disorder of phospholipids, sphingolipids and fatty acids biosynthesis","termid":"MONDO:0018117"},{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0006025","MONDO:0002525","MONDO:0005559","MONDO:0005066"],"is_obsolete":false,"name":"Sjogren-Larsson syndrome","secondary_identifiers":["OMIM:270200","GARD:7654","MEDGEN:11443","UMLS:C0037231","icd11.foundation:418359090","NORD:1377","SCTID:111303009","DOID:14501","NANDO:2200994","MedDRA:10048676","NCIT:C85070","NANDO:1200620","MESH:D016111"],"synonyms":[{"name":"FADH deficiency","type":"related"},{"name":"FALDH deficiency","type":"related"},{"name":"FAO deficiency","type":"related"},{"name":"SLS","type":"exact"},{"name":"Senior-Løken Syndrome","type":"exact"},{"name":"Sjogren Larsson syndrome","type":"exact"},{"name":"Sjogren-Larsson syndrome","type":"exact"},{"name":"Sjogren-Larsson's syndrome","type":"exact"},{"name":"Sjögren-Larsson syndrome","type":"related"},{"name":"fatty acid alcohol oxidoreductase deficiency","type":"exact"},{"name":"fatty alcohol:NAD+ oxidoreductase deficiency","type":"related"},{"name":"fatty aldehyde dehydrogenase deficiency","type":"related"},{"name":"ichthyosis, spastic neurologic disorder, and oligophrenia","type":"related"}],"termid":"MONDO:0010031","xrefs":{"Monarch":{"xref_id":"0010031"}}}


id: GO:0005200
data:
  {"annotated_genes":["SJAG_02509","SJAG_04387","SJAG_01384","SJAG_04003","SJAG_03145"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[57986,60840,63008,77807,109083],"is_not":false,"summary":null,"term":"GO:0005200"}]},"cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural molecule activity","termid":"GO:0005198"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01384":null,"SJAG_02509":null,"SJAG_03145":null,"SJAG_04003":null,"SJAG_04387":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005198"}],"interesting_parent_ids":["GO:0003674","GO:0005198"],"is_obsolete":false,"name":"structural constituent of cytoskeleton","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0005200","terms_by_termid":{"GO:0005200":null}}


id: PBO:0042503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin related 23","termid":"PBO:0042503"}


id: MONDO:0019492
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete desmoid tumor (obsolete MONDO:0019492)","termid":"MONDO:0019492","xrefs":{"Monarch":{"xref_id":"0019492"}}}


id: PBO:0017735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conjugation protein Prm1","termid":"PBO:0017735"}


id: MONDO:0013836
data:
  {"annotated_genes":["SJAG_04000"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86259],"is_not":false,"summary":null,"term":"MONDO:0013836"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"coenzyme Q10 deficiency","termid":"MONDO:0018151"},{"relation_name":"is_a","term_name":"familial idiopathic steroid-resistant nephrotic syndrome","termid":"MONDO:0019006"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069","MONDO:0005244","MONDO:0005240"],"is_obsolete":false,"name":"familial steroid-resistant nephrotic syndrome with sensorineural deafness","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070243","OMIM:614650","MEDGEN:766263","GARD:17295","Orphanet:280406","UMLS:C3553349"],"synonyms":[{"name":"COQ10D6","type":"related"},{"name":"coenzyme Q10 deficiency, primary, 6","type":"related"},{"name":"coenzyme Q10 deficiency, primary, type 6","type":"exact"}],"termid":"MONDO:0013836","terms_by_termid":{"MONDO:0013836":null},"xrefs":{"Monarch":{"xref_id":"0013836"}}}


id: MONDO:0003780
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A broad classification of disorders that affect the cell-mediated aspect of the immune response. Circulating numbers of T lymphocytes are decreased or ineffective.","definition_xrefs":["NCIT:C27145"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"T-cell immunodeficiency","secondary_identifiers":["SCTID:402792003","DOID:613","MEDGEN:226894","UMLS:C1274233"],"synonyms":[{"name":"T lymphocyte deficiency","type":"related"},{"name":"T-cell immunodeficiency","type":"exact"},{"name":"T-lymphocyte deficiency (finding)","type":"exact"},{"name":"T-lymphocyte immunodeficiency","type":"exact"}],"termid":"MONDO:0003780","xrefs":{"Monarch":{"xref_id":"0003780"}}}


id: PBO:0058408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4777","termid":"PBO:0058408"}


id: PBO:0004937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1,3-beta-glucan synthase regulatory factor Chf3/Chr4","termid":"PBO:0004937"}


id: PBO:0044816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 108E (pseudogene)","termid":"PBO:0044816"}


id: GO:0042203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products.","definition_xrefs":["UM-BBD_pathwayID:tol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toluene metabolic process","termid":"GO:0018970"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"toluene-containing compound catabolic process","termid":"GO:0072491"},{"relation_name":"is_a","term_name":"hydrocarbon catabolic process","termid":"GO:0120253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"toluene catabolic process","synonyms":[{"name":"toluene breakdown","type":"exact"},{"name":"toluene catabolism","type":"exact"},{"name":"toluene degradation","type":"exact"}],"termid":"GO:0042203"}


id: PBO:0056643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 15 pseudogene 4","termid":"PBO:0056643"}


id: MONDO:0018269
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"White platelet syndrome (WPS) is is a platelet granule disorder characterized by thrombocytopenia, increased mean platelet volumes, decreased platelet responsiveness to aggregating agents, and significant defects in platelet ultrastructural morphology leading to prolonged bleeding times and bleeding.","definition_xrefs":["Orphanet:370131"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha granule disease","termid":"MONDO:0020117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"white platelet syndrome","secondary_identifiers":["MEDGEN:419379","UMLS:C2931293","MESH:C536702","SCTID:718553004","GARD:9282"],"synonyms":[{"name":"platelet granule deficiency disorder","type":"related"}],"termid":"MONDO:0018269","xrefs":{"Monarch":{"xref_id":"0018269"}}}


id: PBO:0012265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid transporter Aat1","termid":"PBO:0012265"}


id: MONDO:0015046
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Gamma-heavy chain disease (gamma-HCD) is a type of HCD characterized by the production of incomplete monoclonal gamma-heavy chains without associated light chains. The clinical presentation most commonly resembles that of patients with systemic lymphoproliferative/autoimmune diseases.","definition_xrefs":["Orphanet:100026"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heavy chain disease","termid":"MONDO:0019464"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"gamma-heavy chain disease","secondary_identifiers":["NCIT:C3083","GARD:10346","DOID:0060127","MEDGEN:42374","UMLS:C0018854","ICD9:273.2","SCTID:109984001","icd11.foundation:705015637"],"synonyms":[{"name":"Franklin disease","type":"exact"},{"name":"Franklin's disease","type":"exact"},{"name":"gamma heavy chain disease","type":"exact"},{"name":"gamma-HCD","type":"exact"}],"termid":"MONDO:0015046","xrefs":{"Monarch":{"xref_id":"0015046"}}}


id: FYPO:0002157
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of 1,3-beta-D-glucan synthase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal glucosyltransferase activity","termid":"FYPO:0001086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal 1,3-beta-D-glucan synthase activity","termid":"FYPO:0002157"}


id: MONDO:0700032
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Trisomy 18 in which the presence of an extra copy of chromosome 18 is present in all the cells of the organism.","definition_xrefs":["PMID:27087248"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trisomy 18","termid":"MONDO:0018071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complete trisomy 18","secondary_identifiers":["MEDGEN:56262","UMLS:C0152096"],"termid":"MONDO:0700032","xrefs":{"Monarch":{"xref_id":"0700032"}}}


id: PBO:0073559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHC adaptor protein 2","termid":"PBO:0073559"}


id: PBO:0089962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome-associated chaperone, zuotin","termid":"PBO:0089962"}


id: GO:0010457
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the two centrioles within a centrosome remain tightly paired.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"part_of","term_name":"centrosome cycle","termid":"GO:0007098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0007010","GO:0000226","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"centriole-centriole cohesion","termid":"GO:0010457"}


id: PATO:0000545
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000545 relative photosensitivity value (obsolete PATO:0000545)","termid":"PATO:0000545"}


id: PBO:0074942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 107","termid":"PBO:0074942"}


id: PBO:0073271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 7 pseudogene 15","termid":"PBO:0073271"}


id: MONDO:1012818
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital hypotrichosis that occurs in cats due to a mutation in the HR gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hypotrichosis, non-human animal","termid":"MONDO:1012977"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypotrichosis, HR-related, domestic cat","secondary_identifiers":["OMIA:002229-9685"],"termid":"MONDO:1012818","xrefs":{"Monarch":{"xref_id":"1012818"}}}


id: GO:0019597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (R)-mandelate into other compounds, including benzoate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzoate metabolic process","termid":"GO:0018874"},{"relation_name":"is_a","term_name":"mandelate catabolic process","termid":"GO:0019596"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"(R)-mandelate catabolic process to benzoate","synonyms":[{"name":"(R)-mandelate breakdown to benzoate","type":"exact"},{"name":"(R)-mandelate degradation to benzoate","type":"exact"}],"termid":"GO:0019597"}


id: PBO:0079413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 8 class VIII pseudogene 7","termid":"PBO:0079413"}


id: PBO:0000219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ndr kinase/myotonic dystrophy kinase/cot1/warts family","termid":"PBO:0000219"}


id: MONDO:0033258
data:
  {"annotated_genes":["SJAG_00301"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85318],"is_not":false,"summary":null,"term":"MONDO:0033258"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00301":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0000426"],"is_obsolete":false,"name":"hearing loss, autosomal dominant 71","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1621646","GARD:18147","UMLS:C4539881","DOID:0080267","OMIM:617605"],"synonyms":[{"name":"DFNA71","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 71","type":"narrow"},{"name":"deafness, autosomal dominant 71","type":"narrow"}],"termid":"MONDO:0033258","terms_by_termid":{"MONDO:0033258":null},"xrefs":{"Monarch":{"xref_id":"0033258"}}}


id: PBO:0082575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention","termid":"PBO:0082575"}


id: SO:0000453
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome structure variant whereby a region of a chromosome has been transferred to another position. Among interchromosomal rearrangements, the term transposition is reserved for that class in which the telomeres of the chromosomes involved are coupled (that is to say, form the two ends of a single DNA molecule) as in wild-type.","definition_xrefs":["SO:ke","FB:reference_manual"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome_structure_variation","termid":"SO:1000183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosomal_transposition","synonyms":[{"name":"chromosomal transposition","type":"exact"},{"name":"transposition","type":"narrow"}],"termid":"SO:0000453"}


id: PBO:0029861
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_tyrosine_phosphorylation_during_cellular_response_to_osmotic_stress","termid":"PBO:0029861"}


id: MOD:01364
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["Unimod:478#S","PubMed:11467524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fluorescein-5-thiosemicarbazide","termid":"MOD:00626"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fluorescein-5-thiosemicarbazide - site S","synonyms":[{"name":"FTC","type":"related"},{"name":"fluorescein-5-thiosemicarbazide","type":"related"}],"termid":"MOD:01364"}


id: PR:000050473
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein rho1 (Schizosaccharomyces pombe) that is non-covalently bound to GTP.","definition_xrefs":["PMID:10651902","PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTP-binding protein rho1 (Schizosaccharomyces pombe 972h-)","termid":"PR:Q09914"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho1/GTP+","pombase_gene_id":"SPAC1F7.04","synonyms":[{"name":"PomBase_original_PRO_term_name: GTP-binding protein rho1, GTP-bound form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-rho1/GTP+","type":"exact"},{"name":"rho1/GTP+","type":"exact"}],"termid":"PR:000050473"}


id: MONDO:0018882
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Vasculitis represents a clinically heterogenous group of diseases of multifactorial etiology characterized by inflammation of either large-sized vessels (large-vessel vasculitis, e.g. Giant-cell arteritis and Takayasu arteritis), medium-sized vessels (medium-vessel vasculitis e.g. polyarteritis nodosa and Kawasaki disease), or small-sized vessels (small-vessel vasculitis, e.g. granulomatosis with polyangiitis, microscopic polyangiitis, immunoglobulin A vasculitis, and cutaneous leukocytoclastic angiitis). Vasculitis occurs at any age, may be acute or chronic, and manifests with general symptoms such as fever, weight loss and fatigue, as well as more specific clinical signs depending on the type of vessels and organs affected. The degree of severity is variable, ranging from life or sight threatening disease (e.g. Behcet disease) to relatively minor skin disease.","definition_xrefs":["Orphanet:52759"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vasculitis","secondary_identifiers":["EFO:0006803","MEDGEN:12054","Wikipedia:Vasculitis","MESH:D014657","MedDRA:10036023","DOID:865","MedDRA:10047115","GARD:18844","icd11.foundation:572581721","NCIT:C26912","SCTID:31996006","UMLS:C0042384"],"synonyms":[{"name":"angiitis","type":"related"},{"name":"systemic vasculitis","type":"narrow"}],"termid":"MONDO:0018882","xrefs":{"Monarch":{"xref_id":"0018882"}}}


id: MONDO:0017480
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"amelia of lower limb","termid":"MONDO:0017438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"amelia of lower limb, unilateral","secondary_identifiers":["Orphanet:295057","icd11.foundation:1342789404"],"termid":"MONDO:0017480","xrefs":{"Monarch":{"xref_id":"0017480"}}}


id: PBO:0045806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"early endosome antigen 1","termid":"PBO:0045806"}


id: PBO:0051100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1-3","termid":"PBO:0051100"}


id: PBO:0029913
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_lanosterol_level","termid":"PBO:0029913"}


id: RO:0002505
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p has intermediate c if and only if p has parts p1, p2 and p1 has output c, and p2 has input c","direct_ancestors":[{"relation_name":"is_a","term_name":"has_participant","termid":"RO:0000057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_intermediate","termid":"RO:0002505"}


id: PBO:0084015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycolytic enzyme phosphoglucose isomerase; catalyzes the interconversion of glucose-6-phosphate and fructose-6-phosphate; required for cell cycle progression and completion of the gluconeogenic events of sporulation","termid":"PBO:0084015"}


id: GO:0003829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-(1->3)-N-acetyl-D-galactosaminyl-R = UDP + beta-D-galactosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-D-galactosaminyl-R. This reaction is the addition of N-acetyl-alpha-D-glucosamine to the core 1 structure of O-glycans forming core 2.","definition_xrefs":["EC:2.4.1.102"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0016740","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity","secondary_identifiers":["RHEA:18705","Reactome:R-HSA-914012","Reactome:R-HSA-914018","MetaCyc:2.4.1.102-RXN"],"synonyms":[{"name":"O-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:O-glycosyl-glycoprotein (N-acetyl-D-glucosamine to N-acetyl-D-galactosamine of beta-D-galactosyl-1,3-N-acetyl-D-galactosaminyl-R) beta-1,6-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"beta(6)-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"beta6-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"core 2 acetylglucosaminyltransferase activity","type":"related"},{"name":"core 6-beta-GlcNAc-transferase A","type":"related"},{"name":"uridine diphosphoacetylglucosamine-mucin beta-(1,6)-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-mucin beta-(1->6)-acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0003829"}


id: PBO:0114108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex, WD repeat subunit Swd22","termid":"PBO:0114108"}


id: PBO:0011985
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"although this is demonstrated to be DNA polymerase epsilon interactor and names Dpb3, it appears to be the ortholog of S. cerevisie BUR6 and human DRAP1 (supported by PSIblast/ Treefam). The real Dpb3 appears to be the newly identified SPCC16C4.22 see Treefam:TF103009","termid":"PBO:0011985"}


id: PBO:0028866
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mRNA_level_during_vegetative_growth","termid":"PBO:0028866"}


id: PBO:0029129
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_Golgi_apparatus","termid":"PBO:0029129"}


id: GO:0099583
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any neurotransmitter receptor activity that is involved in regulating the concentration of calcium in the postsynaptic cytosol.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"postsynaptic neurotransmitter receptor activity","termid":"GO:0098960"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration","synonyms":[{"name":"neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:0099583"}


id: MONDO:0020620
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood group, ss (obsolete MONDO:0020620)","secondary_identifiers":["OMIM:111740"],"synonyms":[{"name":"BLOOD GROUP, Ss","type":"related"},{"name":"Ss","type":"related"},{"name":"Ss Blood Group","type":"related"},{"name":"blood group, Ss","type":"exact"}],"termid":"MONDO:0020620","xrefs":{"Monarch":{"xref_id":"0020620"}}}


id: PBO:0058285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4661","termid":"PBO:0058285"}


id: MONDO:0020381
data:
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id: GO:0098733
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id: GO:0018807
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id: FYPO:0006514
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id: PR:O74368
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id: GO:1905757
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id: FYPO:0007284
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id: GO:0016747
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id: GO:0097348
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id: GO:0003918
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id: PBO:0015238
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id: MONDO:1012126
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease, non-human animal","termid":"MONDO:1011724"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunodeficiency disease, domestic cat","secondary_identifiers":["OMIA:000550-9685"],"termid":"MONDO:1012126","xrefs":{"Monarch":{"xref_id":"1012126"}}}


id: GO:0048313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The partitioning of Golgi apparatus between daughter cells at cell division.","definition_xrefs":["GOC:jid","PMID:12851069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi organization","termid":"GO:0007030"},{"relation_name":"is_a","term_name":"organelle inheritance","termid":"GO:0048308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Golgi inheritance","secondary_identifiers":["Reactome:R-HSA-162658"],"synonyms":[{"name":"Golgi apparatus inheritance","type":"exact"},{"name":"Golgi division","type":"exact"},{"name":"Golgi partitioning","type":"exact"}],"termid":"GO:0048313"}


id: MONDO:0013710
data:
  {"annotated_genes":["SJAG_02748"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85606],"is_not":false,"summary":null,"term":"MONDO:0013710"}]},"cv_name":"mondo","definition":"Any hereditary nonpolyposis colon cancer in which the cause of the disease is a mutation in the MSH6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"Lynch syndrome","termid":"MONDO:0005835"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"hereditary nonpolyposis colon cancer","termid":"MONDO:0018630"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0000426","MONDO:0004992"],"is_obsolete":false,"name":"Lynch syndrome 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15792","OMIM:614350","UMLS:C1833477","DOID:0070272","MEDGEN:318886","MESH:C563456"],"synonyms":[{"name":"HNPCC5","type":"related"},{"name":"MSH6 hereditary nonpolyposis colon cancer","type":"exact"},{"name":"colorectal cancer, hereditary nonpolyposis, type 5","type":"exact"},{"name":"hereditary nonpolyposis colon cancer caused by mutation in MSH6","type":"exact"}],"termid":"MONDO:0013710","terms_by_termid":{"MONDO:0013710":null},"xrefs":{"Monarch":{"xref_id":"0013710"}}}


id: MONDO:0017200
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polycystic ovaries-urethral sphincter dysfunction syndrome is characterized by urinary retention and incomplete emptying of the bladder associated with abnormal electromyographic activity. It has been described in 33 women, 14 of whom also had polycystic ovaries.","definition_xrefs":["Orphanet:2795"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female reproductive system disorder","termid":"MONDO:0002263"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystic ovaries-urethral sphincter dysfunction syndrome","secondary_identifiers":["GARD:2365","MESH:C537271","UMLS:C2931462","MEDGEN:419813"],"synonyms":[{"name":"fowler Christmas Chapple syndrome","type":"related"},{"name":"fowler's syndrome","type":"related"},{"name":"fowler-Christmas-Chapple syndrome","type":"exact"},{"name":"polycystic ovaries urethral sphincter dysfunction","type":"related"},{"name":"voiding dysfunction and polycystic ovaries","type":"related"}],"termid":"MONDO:0017200","xrefs":{"Monarch":{"xref_id":"0017200"}}}


id: GO:0016130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of phytosteroids, steroids that differ from animal steroids in having substitutions at C24 and/or a double bond at C22. Phytosteroids are so named because they occur in higher plants; some, notably ergosterol, are also found in fungi.","definition_xrefs":["GOC:go_curators","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid catabolic process","termid":"GO:0006706"},{"relation_name":"is_a","term_name":"phytosteroid metabolic process","termid":"GO:0016128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phytosteroid catabolic process","synonyms":[{"name":"phytosteroid breakdown","type":"exact"},{"name":"phytosteroid catabolism","type":"exact"},{"name":"phytosteroid degradation","type":"exact"}],"termid":"GO:0016130"}


id: MONDO:0012769
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"prostate cancer, hereditary","termid":"MONDO:0700275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"prostate cancer, hereditary, 14","secondary_identifiers":["MEDGEN:393832","GARD:15537","MESH:C567448","OMIM:611958","UMLS:C2677772"],"synonyms":[{"name":"HPC14","type":"exact"},{"name":"prostate cancer, hereditary, 14","type":"exact"}],"termid":"MONDO:0012769","xrefs":{"Monarch":{"xref_id":"0012769"}}}


id: FYPO:0001574
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the mitotic spindle has two poles but is otherwise structurally abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle","termid":"FYPO:0000338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002399","FYPO:0001320","FYPO:0005447","FYPO:0000120","FYPO:0000002","FYPO:0000054"],"is_obsolete":false,"name":"abnormal bipolar mitotic spindle","termid":"FYPO:0001574"}


id: PBO:0091362
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complented by human KRAS","termid":"PBO:0091362"}


id: PBO:0078878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily V member 1","termid":"PBO:0078878"}


id: GO:0075168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its protein kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of protein kinase-mediated signal transduction in response to host (obsolete GO:0075168)","synonyms":[{"name":"regulation of symbiont protein kinase-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075168"}


id: PBO:0042019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 74B pseudogene 1","termid":"PBO:0042019"}


id: PBO:0067423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 542, pseudogene","termid":"PBO:0067423"}


id: PBO:0074946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 110","termid":"PBO:0074946"}


id: PBO:0047741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibronectin type III domain containing 4","termid":"PBO:0047741"}


id: PATO:0000746
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000746 consumption value (obsolete PATO:0000746)","termid":"PATO:0000746"}


id: MONDO:0010437
data:
  {"annotated_genes":["SJAG_02016"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86872],"is_not":false,"summary":null,"term":"MONDO:0010437"}]},"cv_name":"mondo","definition":"Severe X-linked mitochondrial encephalomyopathy is an extremely rare mitochondrial respiratory chain disease resulting in a neurodegenerative disorder characterized by psychomotor delay, hypotonia, areflexia, muscle weakness and wasting in the two patients reported to date.","definition_xrefs":["Orphanet:238329"],"direct_ancestors":[{"relation_name":"is_a","term_name":"combined oxidative phosphorylation deficiency","termid":"MONDO:0000732"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02016":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"severe X-linked mitochondrial encephalomyopathy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0111502","GARD:17171","OMIM:300816","MEDGEN:463103","SCTID:722212004","UMLS:C3151753"],"synonyms":[{"name":"COXPD6","type":"related"},{"name":"combined oxidative phosphorylation deficiency 6","type":"related"},{"name":"combined oxidative phosphorylation deficiency 6, X-linked recessive","type":"exact"},{"name":"combined oxidative phosphorylation deficiency type 6","type":"exact"},{"name":"encephalomyopathy, mitochondrial, X-linked","type":"related"},{"name":"mitochondrial encephalomyopathy due to COXPD6","type":"exact"},{"name":"mitochondrial encephalomyopathy due to combined oxidative phosphorylation defect 6","type":"exact"}],"termid":"MONDO:0010437","terms_by_termid":{"MONDO:0010437":null},"xrefs":{"Monarch":{"xref_id":"0010437"}}}


id: GO:0000266
data:
  {"annotated_genes":["SJAG_04732","SJAG_05261","SJAG_02848","SJAG_01212","SJAG_01594","SJAG_03464","SJAG_04203"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[66553,99258],"is_not":false,"summary":null,"term":"GO:0000266"},{"annotations":[102767,102509,94940],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090149"},{"annotations":[116330],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0090258"},{"annotations":[108896],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0090141"}]},"cv_name":"biological_process","definition":"The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments.","definition_xrefs":["PMID:11038192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrion organization","termid":"GO:0007005"},{"relation_name":"is_a","term_name":"organelle fission","termid":"GO:0048285"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01212":null,"SJAG_01594":null,"SJAG_02848":null,"SJAG_03464":null,"SJAG_04203":null,"SJAG_04732":null,"SJAG_05261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0007005","GO:0008150"],"is_obsolete":false,"name":"mitochondrial fission","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial division","type":"exact"},{"name":"mitochondrial proliferation","type":"related"}],"termid":"GO:0000266","terms_by_termid":{"GO:0000266":null,"GO:0090141":null,"GO:0090149":null,"GO:0090258":null}}


id: PBO:0000886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligosaccharyltransferase gamma subunit Ost3 (predicted)","termid":"PBO:0000886"}


id: GO:0050379
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucuronate = UDP-L-iduronate.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"UDP-glucuronate 5'-epimerase activity","secondary_identifiers":["KEGG_REACTION:R01387"],"synonyms":[{"name":"C-5-uronosyl epimerase activity","type":"related"},{"name":"UDP-glucuronate 5' epimerase activity","type":"exact"},{"name":"UDP-glucuronic acid 5'-epimerase activity","type":"related"},{"name":"UDP-glucuronic acid epimerase activity","type":"related"},{"name":"UDPglucuronate 5'-epimerase activity","type":"related"},{"name":"uridine diphosphoglucuronate 5'-epimerase activity","type":"related"}],"termid":"GO:0050379"}


id: PBO:0058137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR4435-2 host gene","termid":"PBO:0058137"}


id: PATO:0001709
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"size","termid":"PATO:0000117"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-D extent","synonyms":[{"name":"2-D size","type":"exact"}],"termid":"PATO:0001709"}


id: PBO:0000665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Gsk3","termid":"PBO:0000665"}


id: GO:0052766
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of the alpha-(1->4) linkage of the terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides.","definition_xrefs":["PMID:20081828","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-mannosidase activity","termid":"GO:0004559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016798"],"is_obsolete":false,"name":"mannoside alpha-1,4-mannosidase activity","synonyms":[{"name":"alpha-1,4-exomannosidase activity","type":"broad"},{"name":"alpha-1,4-mannosidase activity","type":"broad"},{"name":"mannoside alpha-1,4-exomannosidase activity","type":"exact"},{"name":"mannoside exo-alpha-1,4-mannosidase activity","type":"exact"}],"termid":"GO:0052766"}


id: PBO:0084243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Inner nuclear membrane (INM) protein; contains helix-extension-helix (HEH) motif, nuclear localization signal sequence; targeting to the INM requires the Srp1p-Kap95p karyopherins and the Ran cycle; HEH2 has a paralog, SRC1, that arose from the whole genome duplication","termid":"PBO:0084243"}


id: PBO:0067581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 738, pseudogene","termid":"PBO:0067581"}


id: MONDO:0859272
data:
  {"annotated_genes":["SJAG_01638"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86819],"is_not":false,"summary":null,"term":"MONDO:0859272"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01638":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with speech delay and variable ocular anomalies","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619989","MEDGEN:1823967","UMLS:C5774194"],"termid":"MONDO:0859272","terms_by_termid":{"MONDO:0859272":null},"xrefs":{"Monarch":{"xref_id":"0859272"}}}


id: MONDO:0030052
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete disease with punctate palmoplantar keratoderma as a major feature (obsolete MONDO:0030052)","termid":"MONDO:0030052","xrefs":{"Monarch":{"xref_id":"0030052"}}}


id: GO:0030424
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.","definition_xrefs":["ISBN:0198506732","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection","termid":"GO:0043005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"axon","secondary_identifiers":["NIF_Subcellular:sao1770195789","Wikipedia:Axon"],"termid":"GO:0030424"}


id: PBO:0076633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transducin beta like 1 Y-linked","termid":"PBO:0076633"}


id: GO:1903193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sesquarterpene.","definition_xrefs":["GOC:mengo_curators","GO_REF:0000068","PMID:21627333","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene biosynthetic process","termid":"GO:0046246"},{"relation_name":"is_a","term_name":"sesquarterpene metabolic process","termid":"GO:1903192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"sesquarterpene biosynthetic process","synonyms":[{"name":"sesquarterpene anabolism","type":"exact"},{"name":"sesquarterpene biosynthesis","type":"exact"},{"name":"sesquarterpene formation","type":"exact"},{"name":"sesquarterpene synthesis","type":"exact"}],"termid":"GO:1903193"}


id: PBO:0050545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HPS3 biogenesis of lysosomal organelles complex 2 subunit 1","termid":"PBO:0050545"}


id: PBO:0038905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor D2","termid":"PBO:0038905"}


id: PBO:0091812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP citrate synthase subunit 1","termid":"PBO:0091812"}


id: GO:0010524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytosolic calcium ion concentration","termid":"GO:0007204"},{"relation_name":"is_a","term_name":"regulation of calcium ion transport into cytosol","termid":"GO:0010522"},{"relation_name":"is_a","term_name":"positive regulation of calcium ion transmembrane transport","termid":"GO:1904427"},{"relation_name":"positively_regulates","term_name":"calcium ion transport into cytosol","termid":"GO:0060402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"positive regulation of calcium ion transport into cytosol","termid":"GO:0010524"}


id: MONDO:0035441
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare isolated constitutional thrombocytopenia characterized by neonatal onset of small-platelet thrombocytopenia with significantly increased bleeding tendency. Bleeding symptoms include petechial rash, mucosal bleeding, and heavy menstrual bleeding. Growth and development are normal, and there is no increased susceptibility to infections.","definition_xrefs":["Orphanet:566192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited thrombocytopenia","termid":"MONDO:0100241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"congenital autosomal recessive small-platelet thrombocytopenia","secondary_identifiers":["GARD:22274","ICD10CM:D69.4","MEDGEN:1802913","UMLS:C5680129"],"synonyms":[{"name":"CARST","type":"exact"}],"termid":"MONDO:0035441","xrefs":{"Monarch":{"xref_id":"0035441"}}}


id: MONDO:0000143
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete multiple mitochondrial dysfunctions syndrome (obsolete MONDO:0000143)","termid":"MONDO:0000143","xrefs":{"Monarch":{"xref_id":"0000143"}}}


id: PBO:0090630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin binding vezatin family protein involved in peroxisome inheritance Inp2","termid":"PBO:0090630"}


id: PR:Q9P6K3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC30C2.08 gene.","definition_xrefs":["UniProtKB:Q9P6K3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0662 protein C30C2.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC30C2.08","synonyms":[{"name":"Spom972h-SPAC30C2.08","type":"exact"}],"termid":"PR:Q9P6K3"}


id: PBO:0058711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6839","termid":"PBO:0058711"}


id: PBO:0029923
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-GGPP_absent_from_cell","termid":"PBO:0029923"}


id: MONDO:0003441
data:
  {"annotated_genes":["SJAG_03098","SJAG_03275","SJAG_01236","SJAG_01598","SJAG_03900","SJAG_02210","SJAG_03551","SJAG_00690","SJAG_04966","SJAG_04840","SJAG_02680","SJAG_01772","SJAG_03244","SJAG_02007","SJAG_04003","SJAG_01942"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85393],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014557"},{"annotations":[85414],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012994"},{"annotations":[86546],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0025691"},{"annotations":[86010,86011],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030486"},{"annotations":[86051,86052],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030513"},{"annotations":[86903],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030958"},{"annotations":[86306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957385"},{"annotations":[85024],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007495"},{"annotations":[86975],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0015003"},{"annotations":[87067],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030676"},{"annotations":[86233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010334"},{"annotations":[86085],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014889"},{"annotations":[85175],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007493"},{"annotations":[85811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010747"}]},"cv_name":"mondo","definition":"A movement disorder characterized by sustained or intermittent muscle contractions, resulting in abnormal movements and/or postures.","definition_xrefs":["NCIT:C34563"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrapyramidal and movement disease","termid":"MONDO:0001815"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00690":null,"SJAG_01236":null,"SJAG_01598":null,"SJAG_01772":null,"SJAG_01942":null,"SJAG_02007":null,"SJAG_02210":null,"SJAG_02680":null,"SJAG_03098":null,"SJAG_03244":null,"SJAG_03275":null,"SJAG_03551":null,"SJAG_03900":null,"SJAG_04003":null,"SJAG_04840":null,"SJAG_04966":null},"genotype_count":0,"in_subsets":["pombe_mondo_slim"],"is_obsolete":false,"name":"dystonic disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:333.90","DOID:543","SCTID:15802004","MESH:D020821","UMLS:C0013421","ICD10CM:G24","HP:0001332","MEDGEN:3940"],"synonyms":[{"name":"dystonia","type":"exact"},{"name":"dystonia disorder","type":"related"},{"name":"dystonia disorders","type":"related"},{"name":"dystonic disease","type":"exact"},{"name":"dystonic disorder","type":"exact"}],"termid":"MONDO:0003441","terms_by_termid":{"MONDO:0007493":null,"MONDO:0007495":null,"MONDO:0010334":null,"MONDO:0010747":null,"MONDO:0012994":null,"MONDO:0014557":null,"MONDO:0014889":null,"MONDO:0015003":null,"MONDO:0025691":null,"MONDO:0030486":null,"MONDO:0030513":null,"MONDO:0030676":null,"MONDO:0030958":null,"MONDO:0957385":null},"xrefs":{"Monarch":{"xref_id":"0003441"}}}


id: FYPO:0005874
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of medial membrane band assembly is decreased. Medial membrane band assembly is the assembly of a sterol-rich region of the plasma membrane at the cell surface overlying the contractile ring.","definition_xrefs":["GO:0032130","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0000032"],"is_obsolete":false,"name":"decreased rate of medial membrane band assembly","synonyms":[{"name":"decreased rate of medial membrane band assembly during mitotic cell cycle","type":"related"},{"name":"decreased rate of medial membrane band assembly during vegetative growth","type":"exact"},{"name":"decreased rate of medial membrane band formation","type":"exact"},{"name":"reduced rate of medial membrane band assembly","type":"exact"}],"termid":"FYPO:0005874"}


id: MONDO:0003714
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bladder squamous cell carcinoma","termid":"MONDO:0002760"},{"relation_name":"is_a","term_name":"bladder urachal carcinoma","termid":"MONDO:0003715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"bladder urachal squamous cell carcinoma","secondary_identifiers":["MEDGEN:307289","UMLS:C1511206","DOID:5957","NCIT:C39845"],"synonyms":[{"name":"bladder urachal squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0003714","xrefs":{"Monarch":{"xref_id":"0003714"}}}


id: PBO:0033795
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cell_population_growth_at_low_temperature","termid":"PBO:0033795"}


id: GO:0035725
data:
  {"annotated_genes":["SJAG_04028","SJAG_04616","SJAG_01541","SJAG_04167"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61196,67263,89271],"is_not":false,"summary":null,"term":"GO:0035725"},{"annotations":[66839],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036376"}]},"cv_name":"biological_process","definition":"A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium ion transport","termid":"GO:0006814"},{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transport","termid":"GO:0098655"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01541":null,"SJAG_04028":null,"SJAG_04167":null,"SJAG_04616":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"sodium ion transmembrane transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"sodium ion membrane transport","type":"exact"}],"termid":"GO:0035725","terms_by_termid":{"GO:0035725":null,"GO:0036376":null}}


id: SO:0005837
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The primary transcript of an evolutionarily conserved eukaryotic low molecular weight RNA capable of intermolecular hybridization with both homologous and heterologous 18S rRNA.","definition_xrefs":["PMID:2251119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snoRNA_primary_transcript","termid":"SO:0000232"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U14_snoRNA_primary_transcript","synonyms":[{"name":"4.5S snRNA primary transcript","type":"exact"},{"name":"U14 snoRNA primary transcript","type":"exact"}],"termid":"SO:0005837"}


id: PBO:0001587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial hydrogen/potassium transport system protein (predicted)","termid":"PBO:0001587"}


id: PBO:0043008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase domain containing 1","termid":"PBO:0043008"}


id: GO:0021696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the cranial nerves are generated and organized. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function.","definition_xrefs":["GO_REF:0000021","GOC:dph","GOC:jid","ISBN:0838580343","GOC:dgh","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"cerebellum morphogenesis","termid":"GO:0021587"},{"relation_name":"part_of","term_name":"cerebellar cortex development","termid":"GO:0021695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar cortex morphogenesis","termid":"GO:0021696"}


id: PBO:0050141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 51","termid":"PBO:0050141"}


id: PBO:0030285
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_sulfide_level","termid":"PBO:0030285"}


id: PBO:0029377
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-lipid_particles_present_in_decreased_numbers","termid":"PBO:0029377"}


id: PBO:0077062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thrombospondin type 1 domain containing 8","termid":"PBO:0077062"}


id: MONDO:0008657
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete vibratory angioedema (obsolete MONDO:0008657)","termid":"MONDO:0008657","xrefs":{"Monarch":{"xref_id":"0008657"}}}


id: PBO:0057812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3133","termid":"PBO:0057812"}


id: GO:0009290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of DNA into a cell that contributes to the process of transformation, the uptake of foreign genetic material into a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA transport","termid":"GO:0051027"},{"relation_name":"is_a","term_name":"import into cell","termid":"GO:0098657"},{"relation_name":"part_of","term_name":"DNA-mediated transformation","termid":"GO:0009294"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"DNA import into cell involved in transformation","synonyms":[{"name":"DNA import into cell","type":"broad"},{"name":"DNA transport into cell during transformation","type":"related"},{"name":"cellular DNA import during transformation","type":"related"},{"name":"cellular DNA uptake","type":"broad"}],"termid":"GO:0009290"}


id: GO:0046901
data:
  {"annotated_genes":["SJAG_03224","SJAG_00529"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68203,72221],"is_not":false,"summary":null,"term":"GO:0046901"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of tetrahydrofolylpolyglutamate, a folate derivative comprising tetrahydrofolate attached to a chain of glutamate residues.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"folic acid-containing compound biosynthetic process","termid":"GO:0009396"},{"relation_name":"is_a","term_name":"tetrahydrofolylpolyglutamate metabolic process","termid":"GO:0046900"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00529":null,"SJAG_03224":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0042559"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0042559","GO:0008150"],"is_obsolete":false,"name":"tetrahydrofolylpolyglutamate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null},"synonyms":[{"name":"THF polyglutamylation","type":"exact"},{"name":"folic acid-containing compound polyglutamylation","type":"broad"},{"name":"tetrahydrofolate polyglutamylation","type":"exact"},{"name":"tetrahydrofolyl-[Glu](n) biosynthesis","type":"exact"},{"name":"tetrahydrofolyl-[Glu](n) biosynthetic process","type":"exact"},{"name":"tetrahydrofolylpolyglutamate anabolism","type":"exact"},{"name":"tetrahydrofolylpolyglutamate biosynthesis","type":"exact"},{"name":"tetrahydrofolylpolyglutamate formation","type":"exact"},{"name":"tetrahydrofolylpolyglutamate synthesis","type":"exact"}],"termid":"GO:0046901","terms_by_termid":{"GO:0046901":null}}


id: GO:1904352
data:
  {"annotated_genes":["SJAG_04990"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99394],"is_not":false,"summary":null,"term":"GO:1904352"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein catabolic process in the vacuole.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:rl","GOC:BHF","PMID:25635054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein catabolic process","termid":"GO:0045732"},{"relation_name":"is_a","term_name":"regulation of protein catabolic process in the vacuole","termid":"GO:1904350"},{"relation_name":"positively_regulates","term_name":"protein catabolic process in the vacuole","termid":"GO:0007039"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04990":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"positively_regulates","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein catabolic process in the vacuole","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of protein catabolic process in the vacuole","type":"narrow"},{"name":"activation of vacuolar protein breakdown","type":"related"},{"name":"activation of vacuolar protein catabolic process","type":"related"},{"name":"activation of vacuolar protein catabolism","type":"related"},{"name":"activation of vacuolar protein degradation","type":"related"},{"name":"positive regulation of vacuolar protein breakdown","type":"related"},{"name":"positive regulation of vacuolar protein catabolic process","type":"related"},{"name":"positive regulation of vacuolar protein catabolism","type":"related"},{"name":"positive regulation of vacuolar protein degradation","type":"related"},{"name":"up regulation of protein catabolic process in the vacuole","type":"exact"},{"name":"up regulation of vacuolar protein breakdown","type":"related"},{"name":"up regulation of vacuolar protein catabolic process","type":"related"},{"name":"up regulation of vacuolar protein catabolism","type":"related"},{"name":"up regulation of vacuolar protein degradation","type":"related"},{"name":"up-regulation of protein catabolic process in the vacuole","type":"exact"},{"name":"up-regulation of vacuolar protein breakdown","type":"related"},{"name":"up-regulation of vacuolar protein catabolic process","type":"related"},{"name":"up-regulation of vacuolar protein catabolism","type":"related"},{"name":"up-regulation of vacuolar protein degradation","type":"related"},{"name":"upregulation of protein catabolic process in the vacuole","type":"exact"},{"name":"upregulation of vacuolar protein breakdown","type":"related"},{"name":"upregulation of vacuolar protein catabolic process","type":"related"},{"name":"upregulation of vacuolar protein catabolism","type":"related"},{"name":"upregulation of vacuolar protein degradation","type":"related"}],"termid":"GO:1904352","terms_by_termid":{"GO:1904352":null}}


id: PBO:0071088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 90","termid":"PBO:0071088"}


id: PBO:0081346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 154","termid":"PBO:0081346"}


id: PBO:0045812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 2","termid":"PBO:0045812"}


id: MONDO:0000665
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Apraxia is a neurological disorder characterized by the inability to perform tasks or movements, despite having the desire and physical ability to perform them. It is caused by damage to the brain, especially the parietal lobe, and can arise from many diseases, tumors, a stroke, or traumatic brain injury. In some cases it is present from birth. There are several types of apraxia, which may occur alone or together. These include: Buccofacial or orofacial apraxia is the inability to carry out facial movements on demand. This may include licking the lips, sticking out the tongue, whistling, coughing, or winking. Ideational apraxia is the inability to carryout learned, complex tasks with multiple, sequential movements. This may include dressing, eating, and bathing. Ideomotor apraxia is the inability to perform a learned task (such as using a tool) or communicate using gestures (like waving good-bye). Limb-kinetic apraxia is the inability to make fine, precise movements with an arm or leg. This may include buttoning a shirt or tying a shoe. Verbal apraxia is difficulty coordinating mouth and speech movements. Verbal apraxia may be acquired or present from birth. Constructional apraxia is the inability to copy, draw, or construct simple figures. Oculomotor apraxia is difficulty moving the eyes on command. Treatment of apraxia may include physical, speech, or occupational therapy. If apraxia occurs as a symptom of another disorder, treatment should be directed to the underlying condition.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"agnosia","termid":"MONDO:0005638"},{"relation_name":"is_a","term_name":"perceptual disorders","termid":"MONDO:0024417"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apraxia","secondary_identifiers":["icd11.foundation:986651951","MESH:D001072","MEDGEN:8166","DOID:0060135","NCIT:C180557","UMLS:C0003635","ICD10CM:R48.2"],"synonyms":[{"name":"Apraxias","type":"exact"},{"name":"dyspraxia","type":"exact"}],"termid":"MONDO:0000665","xrefs":{"Monarch":{"xref_id":"0000665"}}}


id: PBO:0034609
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination_with_elongated_germ_tube_and_fragmented_nucleus","termid":"PBO:0034609"}


id: MONDO:0008503
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Worster-Drought syndrome (WDS) is a form of cerebral palsy characterized by congenital pseudobulbar (suprabulbar) paresis manifesting as selective weakness of the lips, tongue and soft palate, dysphagia, dysphonia, drooling and jaw jerking.","definition_xrefs":["Orphanet:3465"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Worster-Drought syndrome","secondary_identifiers":["GARD:5598","NANDO:1200558","icd11.foundation:1834138618","SCTID:716335003","UMLS:C0796204","OMIM:185480","MEDGEN:163228","MESH:C536747"],"synonyms":[{"name":"Worster Drought syndrome","type":"related"},{"name":"Worster-Drought syndrome","type":"exact"},{"name":"congenital suprabulbar paresis","type":"exact"},{"name":"suprabulbar paresis congenital","type":"related"},{"name":"suprabulbar paresis, congenital","type":"related"}],"termid":"MONDO:0008503","xrefs":{"Monarch":{"xref_id":"0008503"}}}


id: PBO:0001632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingosine-1-phosphate phosphatase (predicted)","termid":"PBO:0001632"}


id: GO:0008094
data:
  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activity, acting on DNA","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0004011"],"synonyms":[{"name":"ATPase activity, acting on DNA","type":"exact"},{"name":"ATPase, acting on DNA","type":"exact"},{"name":"DNA dependent ATPase activity","type":"exact"},{"name":"DNA-dependent ATPase activity","type":"exact"},{"name":"DNA-dependent adenosinetriphosphatase activity","type":"exact"},{"name":"adenosinetriphosphatase (DNA-dependent)","type":"exact"}],"termid":"GO:0008094","terms_by_termid":{"GO:0003678":null,"GO:0003689":null,"GO:0003918":null,"GO:0008094":null,"GO:0009378":null,"GO:0015616":null,"GO:0017116":null,"GO:0033678":null,"GO:0033679":null,"GO:0034335":null,"GO:0036121":null,"GO:0043138":null,"GO:0043139":null,"GO:0061749":null,"GO:0061860":null,"GO:0061995":null,"GO:0140658":null,"GO:0140664":null,"GO:0140665":null,"GO:0140674":null,"GO:0140750":null,"GO:0140849":null,"GO:1990518":null}}


id: MONDO:0002773
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0002773 (obsolete MONDO:0002773)","termid":"MONDO:0002773","xrefs":{"Monarch":{"xref_id":"0002773"}}}


id: MONDO:1011925
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder, non-human animal","termid":"MONDO:0700104"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"syndromic disease, non-human animal","termid":"MONDO:1011360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia, non-human animal","secondary_identifiers":["OMIA:000573"],"termid":"MONDO:1011925","xrefs":{"Monarch":{"xref_id":"1011925"}}}


id: MOD:01495
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the O4'-hydrogen atom of a tyrosine residue with the Applied Biosystems iTRAQ4plex-115 reporter+balance group.","definition_xrefs":["OMSSA:172","Unimod:533#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"iTRAQ4plex-115 reporter+balance reagent acylated residue","termid":"MOD:01492"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent O-acylated residue","termid":"MOD:01713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ4plex-115 reporter+balance reagent O4'-acylated tyrosine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Accurate mass for 115","type":"related"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"iTRAQ115","type":"related"},{"name":"iTRAQ115Y","type":"exact"},{"name":"iTRAQ4plex115","type":"related"}],"termid":"MOD:01495"}


id: GO:0030006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Regulation of the levels, transport, and metabolism of ions of a heavy metal, a metal that can form a coordination bond with a protein, as opposed to an alkali or alkaline-earth metal that can only form an ionic bond; this definition includes the following biologically relevant heavy metals: Cd, Co, Cu, Fe, Hg, Mn, Mo, Ni, V, W, Zn.","definition_xrefs":["GOC:mah","GOC:kd"],"gene_count":0,"genotype_count":0,"name":"obsolete heavy cellular metal ion homeostasis (obsolete GO:0030006)","synonyms":[{"name":"heavy cellular metal ion homeostasis","type":"exact"}],"termid":"GO:0030006"}


id: MONDO:0001477
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete aniridia (obsolete MONDO:0001477)","termid":"MONDO:0001477","xrefs":{"Monarch":{"xref_id":"0001477"}}}


id: GO:0016038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reception of a (visible light) photon by a cell, visible light being defined as having a wavelength within the range 380-780 nm.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"light absorption","termid":"GO:0016037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"absorption of visible light","termid":"GO:0016038"}


id: PBO:0044418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYP2U1 and SGMS2 antisense RNA 1","termid":"PBO:0044418"}


id: PBO:0004393
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.1.1.3","termid":"PBO:0004393"}


id: PBO:0080431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS51 pseudogene 15","termid":"PBO:0080431"}


id: PBO:0046872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM3 metabolism regulating signaling molecule C","termid":"PBO:0046872"}


id: FYPO:0000039
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize lysine, and therefore requires lysine in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for lysine","synonyms":[{"name":"growth auxotrophic for lysine during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for lysine during vegetative growth","type":"exact"},{"name":"lysine auxotrophy","type":"exact"}],"termid":"FYPO:0000039"}


id: GO:0098801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a system process, a multicellular organismal process carried out by the renal system.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of system process","termid":"GO:0044057"},{"relation_name":"regulates","term_name":"renal system process","termid":"GO:0003014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of renal system process","termid":"GO:0098801"}


id: PBO:0079402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 6 class V","termid":"PBO:0079402"}


id: MONDO:0000652
data:
  {"annotated_genes":["SJAG_02855","SJAG_03453","SJAG_00031"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010621"},{"annotations":[86755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044792"},{"annotations":[85847],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008097"},{"annotations":[86648],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007908"},{"annotations":[85427],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009578"},{"annotations":[85004],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008093"}]},"cv_name":"mondo","definition":"A benign neoplasm that involves the integumental system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder","termid":"MONDO:0002051"},{"relation_name":"is_a","term_name":"benign neoplasm","termid":"MONDO:0005165"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00031":null,"SJAG_02855":null,"SJAG_03453":null},"genotype_count":0,"is_obsolete":false,"name":"integumentary system benign neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0060121"],"synonyms":[{"name":"integumental system benign neoplasm","type":"exact"}],"termid":"MONDO:0000652","terms_by_termid":{"MONDO:0007908":null,"MONDO:0008093":null,"MONDO:0008097":null,"MONDO:0009578":null,"MONDO:0010621":null,"MONDO:0044792":null},"xrefs":{"Monarch":{"xref_id":"0000652"}}}


id: GO:0010091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the formation of branches in plant hair cells. An example of this process is found in Arabidopsis thaliana.","definition_xrefs":["GOC:mtg_sensu","GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"part_of","term_name":"trichome morphogenesis","termid":"GO:0010090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trichome branching","secondary_identifiers":["GO:0048274"],"termid":"GO:0010091"}


id: MONDO:0006543
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A genetic skin disorder caused by mutations in the type VII collagen gene (COL7A1). It is characterized by the formation of blisters and scarring in the skin and mucous membranes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"epidermolysis bullosa","termid":"MONDO:0006541"},{"relation_name":"is_a","term_name":"inherited epidermolysis bullosa","termid":"MONDO:0019276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"epidermolysis bullosa dystrophica","secondary_identifiers":["NCIT:C84691","icd11.foundation:1060981106","MEDGEN:37179","EFO:1000692","SCTID:254185007","UMLS:C0079294","DOID:4959","Orphanet:303","MESH:D016108","GARD:2150","Wikipedia:Epidermolysis_bullosa_dystrophica","ICD9:757.39"],"synonyms":[{"name":"DEB","type":"exact"},{"name":"dermolytic epidermolysis bullosa","type":"exact"},{"name":"epidermolysis bullosa dystrophica","type":"exact"},{"name":"epidermolysis bullosa, dermolytic","type":"related"}],"termid":"MONDO:0006543","xrefs":{"Monarch":{"xref_id":"0006543"}}}


id: PBO:0069734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1015, pseudogene","termid":"PBO:0069734"}


id: GO:1903119
data:
  {"annotated_genes":["SJAG_00279","SJAG_02228","SJAG_02831","SJAG_04703"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107178],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044379"},{"annotations":[110815,92295,118670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904498"}]},"cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, the location of an actin cytoskeleton.","definition_xrefs":["PMID:24798735","GO_REF:0000087","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cytoskeleton","termid":"GO:0044380"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_02228":null,"SJAG_02831":null,"SJAG_04703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to actin cytoskeleton","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation in actin cytoskeleton","type":"exact"},{"name":"protein localisation to actin cytoskeleton","type":"exact"},{"name":"protein localization in actin cytoskeleton","type":"exact"}],"termid":"GO:1903119","terms_by_termid":{"GO:0044379":null,"GO:1904498":null}}


id: PBO:0091434
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements E. coli alkA/tag double mutant","termid":"PBO:0091434"}


id: MONDO:0009540
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chronic mucocutaneous candidiasis","termid":"MONDO:0015279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005046"],"is_obsolete":false,"name":"chronic mucocutaneous candidiasis due to lymphokine deficiency","secondary_identifiers":["OMIM:247650","GARD:15194","MESH:C565428","MEDGEN:340878","UMLS:C1855471"],"synonyms":[{"name":"lymphokine deficiency","type":"exact"}],"termid":"MONDO:0009540","xrefs":{"Monarch":{"xref_id":"0009540"}}}


id: GO:0032068
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex consisting of two proteins which acts as an endonuclease in DNA sequences containing a specific modified recognition site. Modifications may include methylation, hydroxymethylation, and glucosyl-hydroxymethylation.","definition_xrefs":["PMID:12654995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endodeoxyribonuclease complex","termid":"GO:1905347"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"type IV site-specific deoxyribonuclease complex","synonyms":[{"name":"type IV restriction enzyme complex","type":"exact"}],"termid":"GO:0032068"}


id: SO:0000046
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"To insert a subsection of sequence.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000046 insert (obsolete SO:0000046)","termid":"SO:0000046"}


id: MONDO:1010799
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cutis laxa that occurs in sika deer.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cutis laxa, non-human animal","termid":"MONDO:1010155"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cutis laxa, sika deer","secondary_identifiers":["OMIA:002404-9863"],"termid":"MONDO:1010799","xrefs":{"Monarch":{"xref_id":"1010799"}}}


id: PBO:0068588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 39, pseudogene","termid":"PBO:0068588"}


id: PBO:0003132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC50 domain protein, implicated in signal transduction (predicted)","termid":"PBO:0003132"}


id: PBO:0039414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Angelman syndrome chromosome region","termid":"PBO:0039414"}


id: GO:0008291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving acetylcholine, the acetic acid ester of the organic base choline. Acetylcholine is a major neurotransmitter and neuromodulator both in the central and peripheral nervous systems. It also acts as a paracrine signal in various non-neural tissues.","definition_xrefs":["GOC:jl","ISBN:0192800752","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetate ester metabolic process","termid":"GO:1900619"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetylcholine metabolic process","synonyms":[{"name":"acetylcholine metabolism","type":"exact"}],"termid":"GO:0008291"}


id: PBO:0002241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex subunit Swc3","termid":"PBO:0002241"}


id: PBO:0026754
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_mitotic_cell_cycle_arrest_during_cellular_response_to_hydroxyurea","termid":"PBO:0026754"}


id: MONDO:0010748
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Torticollis-keloids-cryptorchidism-renal dysplasia syndrome is an extremely rare developmental defect during embryogenesis malformation syndrome characterized by congenital muscular torticollis associated with skin anomalies (such as multiple keloids, pigmented nevi, epithelioma), urogenital malformations (including cryptorchidism and hypospadias) and renal dysplasia (e.g. chronic pyelonephritis, renal atrophy). Additional reported features include varicose veins, intellectual disability and musculoskeletal anomalies.","definition_xrefs":["Orphanet:3341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"torticollis-keloids-cryptorchidism-renal dysplasia syndrome","secondary_identifiers":["GARD:5230","MEDGEN:326819","MESH:C536970","OMIM:314300","UMLS:C1839129"],"synonyms":[{"name":"Goeminne TKCR syndrome","type":"exact"},{"name":"Goeminne syndrome","type":"related"},{"name":"TKCR","type":"related"},{"name":"Tkc","type":"related"},{"name":"Tkcr syndrome","type":"related"},{"name":"torticollis keloids cryptorchidism renal dysplasia","type":"related"},{"name":"torticollis, keloids, cryptorchidism, and renal dysplasia","type":"related"}],"termid":"MONDO:0010748","xrefs":{"Monarch":{"xref_id":"0010748"}}}


id: PBO:0113472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC2, a regulator of plasma membrane (PM) homeostasis; TORC2 also regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; interacts with Slm1p and Slm2p, homologous PH domain-containing TORC2 substrates; BIT2 has a paralog, BIT61, that arose from the whole genome duplication","termid":"PBO:0113472"}


id: PBO:0113761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fumarate hydratase Fum1","termid":"PBO:0113761"}


id: MONDO:0008419
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scoliosis, isolated, susceptibility to, 1","secondary_identifiers":["UMLS:C2700406","MEDGEN:438003","OMIM:181800"],"synonyms":[{"name":"IS1","type":"exact"},{"name":"adolescent idiopathic scoliosis","type":"related"},{"name":"adolescent isolated scoliosis","type":"related"},{"name":"scoliosis, idiopathic 1","type":"exact"},{"name":"scoliosis, isolated, susceptibility to, 1","type":"exact"}],"termid":"MONDO:0008419","xrefs":{"Monarch":{"xref_id":"0008419"}}}


id: PBO:0053282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lens intrinsic membrane protein 2","termid":"PBO:0053282"}


id: PBO:0081160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger RNA binding protein","termid":"PBO:0081160"}


id: PBO:0054784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2197","termid":"PBO:0054784"}


id: GO:0030883
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an endogenous cellular lipid antigen.","definition_xrefs":["PMID:14500461"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid antigen binding","termid":"GO:0030882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0008289"],"is_obsolete":false,"name":"endogenous lipid antigen binding","termid":"GO:0030883"}


id: MONDO:1012535
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cardiomyopathy and juvenile mortality, non-human animal","termid":"MONDO:1011651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiomyopathy and juvenile mortality, dog","secondary_identifiers":["OMIA:002256-9615"],"termid":"MONDO:1012535","xrefs":{"Monarch":{"xref_id":"1012535"}}}


id: GO:0016212
data:
  {"annotated_genes":["SJAG_04988"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73700],"is_not":false,"summary":null,"term":"GO:0016212"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + L-kynurenine = H2O + kynurenate + L-glutamate. The product 4-(2-aminophenyl)-2,4-dioxobutanoate is converted into kynurenate by a spontaneous reaction. Also acts on 3-hydroxykynurenine to form xanthurenate.","definition_xrefs":["EC:2.6.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04988":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016769","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"kynurenine-oxoglutarate transaminase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-893583","Reactome:R-HSA-893596","Reactome:R-HSA-901097"],"synonyms":[{"name":"L-kynurenine aminotransferase activity","type":"related"},{"name":"L-kynurenine:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"kynurenine 2-oxoglutarate transaminase activity","type":"related"},{"name":"kynurenine aminotransferase activity","type":"broad"},{"name":"kynurenine transaminase (cyclizing)","type":"related"},{"name":"kynurenine--oxoglutarate aminotransferase activity","type":"related"},{"name":"kynurenine-oxoglutarate aminotransferase activity","type":"exact"}],"termid":"GO:0016212","terms_by_termid":{"GO:0016212":null}}


id: PBO:0078456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor gamma variable 8","termid":"PBO:0078456"}


id: MONDO:0016300
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete transposition of the great arteries (obsolete MONDO:0016300)","termid":"MONDO:0016300","xrefs":{"Monarch":{"xref_id":"0016300"}}}


id: PBO:0068317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 17","termid":"PBO:0068317"}


id: PBO:0064109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PKD1 antisense RNA 1","termid":"PBO:0064109"}


id: PBO:0091317
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by A. thaliana AtSGP2","termid":"PBO:0091317"}


id: PBO:0027808
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_KT5720","termid":"PBO:0027808"}


id: PBO:0028407
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_biotin_import","termid":"PBO:0028407"}


id: PBO:0040686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCAS3 microtubule associated cell migration factor","termid":"PBO:0040686"}


id: GO:0018213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-valine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-amino acid modification","termid":"GO:0018193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-valine modification","termid":"GO:0018213"}


id: GO:0048377
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a lateral mesoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell fate specification","termid":"GO:0007501"},{"relation_name":"part_of","term_name":"lateral mesodermal cell fate commitment","termid":"GO:0048372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lateral mesodermal cell fate specification","synonyms":[{"name":"lateral mesoderm cell fate specification","type":"exact"},{"name":"lateral plate mesoderm cell fate specification","type":"exact"},{"name":"lateral plate mesodermal cell fate specification","type":"exact"}],"termid":"GO:0048377"}


id: GO:0016341
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete other collagen (obsolete GO:0016341)","synonyms":[{"name":"other collagen","type":"exact"}],"termid":"GO:0016341"}


id: GO:0042714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of proteins on DNA or RNA to form the complex that mediates dosage compensation on one or more X chromosomes.","definition_xrefs":["PMID:11102361","GOC:jl","PMID:12672493"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"sex-chromosome dosage compensation","termid":"GO:0007549"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0006325"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0006325","GO:0065003"],"is_obsolete":false,"name":"dosage compensation complex assembly","termid":"GO:0042714"}


id: MONDO:0044972
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease or disorder that involves the eosinophil.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte disorder","termid":"MONDO:0004805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"eosinophil disorder","secondary_identifiers":["MEDGEN:739396","SCTID:417967008","UMLS:C1691020"],"synonyms":[{"name":"disease of eosinophil","type":"exact"},{"name":"disease or disorder of eosinophil","type":"exact"},{"name":"disorder of eosinophil","type":"exact"},{"name":"eosinophil disease or disorder","type":"exact"}],"termid":"MONDO:0044972","xrefs":{"Monarch":{"xref_id":"0044972"}}}


id: PBO:0053594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 621","termid":"PBO:0053594"}


id: PBO:0030914
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_response_to_chemical_stimulus_during_vegetative_growth","termid":"PBO:0030914"}


id: PBO:0084593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein;YGR272C was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YGR271C-A","termid":"PBO:0084593"}


id: PBO:0045802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EDNRB antisense RNA 1","termid":"PBO:0045802"}


id: PBO:0017473
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-during_which_starts","termid":"PBO:0017473"}


id: GO:0006220
data:
  {"annotated_genes":["SJAG_03676","SJAG_04665","SJAG_03164","SJAG_03708","SJAG_00885","SJAG_04487","SJAG_00964","SJAG_04657","SJAG_00694","SJAG_00533","SJAG_04627","SJAG_00197","SJAG_02887","SJAG_03771","SJAG_00779","SJAG_00444","SJAG_02874","SJAG_04709","SJAG_04713","SJAG_04354","SJAG_05024"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62972],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044210"},{"annotations":[57242,59106,59421,61093,61808],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044205"},{"annotations":[80391],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046705"},{"annotations":[92405,107271],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046704"},{"annotations":[67790],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009224"},{"annotations":[64538],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006241"},{"annotations":[76201],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046036"},{"annotations":[92937,67792],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[95460,92406,107272],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[70726],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[69777,79319],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[68328,92407,70727],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"},{"annotations":[70725],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[69776,79427],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"},{"annotations":[79425],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046081"},{"annotations":[80390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006225"},{"annotations":[76206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006256"},{"annotations":[67791,87418,92938,88405,91938],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"},{"annotations":[64537],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006228"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide metabolic process","termid":"GO:0009117"},{"relation_name":"is_a","term_name":"pyrimidine-containing compound metabolic process","termid":"GO:0072527"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00197":null,"SJAG_00444":null,"SJAG_00533":null,"SJAG_00694":null,"SJAG_00779":null,"SJAG_00885":null,"SJAG_00964":null,"SJAG_02874":null,"SJAG_02887":null,"SJAG_03164":null,"SJAG_03676":null,"SJAG_03708":null,"SJAG_03771":null,"SJAG_04354":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04657":null,"SJAG_04665":null,"SJAG_04709":null,"SJAG_04713":null,"SJAG_05024":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pyrimidine nucleotide metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"pyrimidine metabolic process","type":"broad"},{"name":"pyrimidine metabolism","type":"broad"},{"name":"pyrimidine nucleotide metabolism","type":"exact"}],"termid":"GO:0006220","terms_by_termid":{"GO:0006225":null,"GO:0006226":null,"GO:0006227":null,"GO:0006228":null,"GO:0006231":null,"GO:0006233":null,"GO:0006235":null,"GO:0006240":null,"GO:0006241":null,"GO:0006256":null,"GO:0009224":null,"GO:0044205":null,"GO:0044206":null,"GO:0044210":null,"GO:0044211":null,"GO:0046036":null,"GO:0046081":null,"GO:0046704":null,"GO:0046705":null}}


id: PBO:0042425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 27 pseudogene 9","termid":"PBO:0042425"}


id: PBO:0078808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 25-1","termid":"PBO:0078808"}


id: GO:0100048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phosphatidylcholine biosynthetic process.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100048)","termid":"GO:0100048"}


id: GO:1901118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cephamycin C.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-lactam antibiotic biosynthetic process","termid":"GO:0030654"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"cephamycin C metabolic process","termid":"GO:1901116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0044281","GO:0006790","GO:0008150"],"is_obsolete":false,"name":"cephamycin C biosynthetic process","synonyms":[{"name":"cephamycin C anabolism","type":"exact"},{"name":"cephamycin C biosynthesis","type":"exact"},{"name":"cephamycin C formation","type":"exact"},{"name":"cephamycin C synthesis","type":"exact"}],"termid":"GO:1901118"}


id: PBO:0112592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decaprenyl diphosphate synthase subunit Dps1/Coq1","termid":"PBO:0112592"}


id: MONDO:0008522
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synovial chondromatosis, familial, with dwarfism","secondary_identifiers":["UMLS:C1861304","OMIM:186575","MESH:C566087","MEDGEN:348836"],"synonyms":[{"name":"synovial chondromatosis, familial with dwarfism","type":"related"},{"name":"synovial chondromatosis, familial, with dwarfism","type":"exact"}],"termid":"MONDO:0008522","xrefs":{"Monarch":{"xref_id":"0008522"}}}


id: PBO:0001466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gluconokinase","termid":"PBO:0001466"}


id: GO:0045134
data:
  {"annotated_genes":["SJAG_03676","SJAG_01595"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70381,76200],"is_not":false,"summary":null,"term":"GO:0045134"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP + H2O = UMP + phosphate.","definition_xrefs":["RHEA:64876"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate phosphatase activity","termid":"GO:0017110"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01595":null,"SJAG_03676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"UDP phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:RXN-12197","KEGG_REACTION:R00155"],"synonyms":[{"name":"UDP phosphohydrolase activity","type":"exact"},{"name":"UDPase activity","type":"related"},{"name":"uridine 5'-diphosphatase activity","type":"related"},{"name":"uridine diphosphatase activity","type":"related"},{"name":"uridine-diphosphatase activity","type":"exact"}],"termid":"GO:0045134","terms_by_termid":{"GO:0045134":null}}


id: MONDO:0002399
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well-circumscribed, lobulated tumor, completely or partially covered by a fibrous capsule. It usually arises in the fingers. It is characterized by the presence of mononuclear cells, multinucleated osteoclast-like giant cells, hemosiderin-laden macrophages, foam cells, and an inflammatory infiltrate. The tumor is slow-growing, usually developing over several years. Clinical presentation includes painless edema of the affected site.","definition_xrefs":["NCIT:C6532"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tenosynovial giant cell tumor","termid":"MONDO:0002522"},{"relation_name":"is_a","term_name":"benign synovial neoplasm","termid":"MONDO:0024715"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tenosynovial giant cell tumor, localized type","secondary_identifiers":["DOID:2701","ICD9:727.02","MEDGEN:154413","SCTID:95413004","UMLS:C0588125"],"synonyms":[{"name":"benign synovioma","type":"related"},{"name":"benign tumor of synovium","type":"related"},{"name":"benign tumour of synovium","type":"related"},{"name":"localised giant cell neoplasm of Tenosynovium","type":"exact"},{"name":"localised giant cell neoplasm of tendon sheath","type":"exact"},{"name":"localised giant cell neoplasm of the Tenosynovium","type":"exact"},{"name":"localised giant cell tumour of Tenosynovium","type":"exact"},{"name":"localised giant cell tumour of tendon sheath","type":"exact"},{"name":"localised giant cell tumour of the Tenosynovium","type":"exact"},{"name":"localised tenosynovial giant cell neoplasm","type":"exact"},{"name":"localised tenosynovial giant cell tumour","type":"exact"},{"name":"localized giant cell neoplasm of Tenosynovium","type":"exact"},{"name":"localized giant cell neoplasm of tendon sheath","type":"exact"},{"name":"localized giant cell neoplasm of the Tenosynovium","type":"exact"},{"name":"localized giant cell tumor of Tenosynovium","type":"exact"},{"name":"localized giant cell tumor of tendon sheath","type":"exact"},{"name":"localized giant cell tumor of the Tenosynovium","type":"exact"},{"name":"localized tenosynovial giant cell neoplasm","type":"exact"},{"name":"localized tenosynovial giant cell tumor","type":"exact"},{"name":"nodular tenosynovitis","type":"exact"},{"name":"synovioma, benign (morphologic abnormality)","type":"exact"},{"name":"tenosynovial giant cell tumor, localized type","type":"exact"}],"termid":"MONDO:0002399","xrefs":{"Monarch":{"xref_id":"0002399"}}}


id: PBO:0060105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 6","termid":"PBO:0060105"}


id: PBO:0091658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane ferric-chelate reductase Frp1","termid":"PBO:0091658"}


id: MONDO:0016759
data:
  {"annotated_genes":["SJAG_00754","SJAG_01260","SJAG_04907","SJAG_03328"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86567],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010190"},{"annotations":[87034],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012890"},{"annotations":[87038],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012891"},{"annotations":[86055],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014874"}]},"cv_name":"mondo","definition":"Pontocerebellar hypoplasia type 2 (PCH2) is the most common subtype of pontocerebellar hypoplasia characterized by neonatal onset and a lack of voluntary motor development and later progressive microencephaly, generalized clonus, development of chorea and spasticity. The majority of patients will not reach puberty.","definition_xrefs":["Orphanet:2524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bulbospinal muscular atrophy","termid":"MONDO:0016113"},{"relation_name":"is_a","term_name":"pontocerebellar hypoplasia","termid":"MONDO:0020135"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00754":null,"SJAG_01260":null,"SJAG_03328":null,"SJAG_04907":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0020022"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0020022"],"is_obsolete":false,"name":"pontocerebellar hypoplasia type 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:420956","MESH:C548070","SCTID:715463008","UMLS:C2932714","NCIT:C124057","GARD:10705","icd11.foundation:1158649247","DOID:0112328"],"synonyms":[{"name":"PCH2","type":"exact"},{"name":"progressive microcephaly from birth extrapyramidal dyskinesia chorea epilepsy","type":"related"}],"termid":"MONDO:0016759","terms_by_termid":{"MONDO:0010190":null,"MONDO:0012890":null,"MONDO:0012891":null,"MONDO:0014874":null},"xrefs":{"Monarch":{"xref_id":"0016759"}}}


id: PBO:0060370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myotilin","termid":"PBO:0060370"}


id: MONDO:0023042
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ectodermal dysplasia margarita type","secondary_identifiers":["GARD:2050"],"termid":"MONDO:0023042","xrefs":{"Monarch":{"xref_id":"0023042"}}}


id: PBO:0044326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 6","termid":"PBO:0044326"}


id: MOD:00327
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to a 3-hydroxy-L-tryptophan.","definition_xrefs":["ChEBI:141794","RESID:AA0322","PubMed:10024453","PubMed:11457355"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated tryptophan","termid":"MOD:01622"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxy-L-tryptophan","synonyms":[{"name":"(2S,3S)-2-amino-3-hydroxy-3-(1H-indol-3-yl)propanoic acid","type":"exact"},{"name":"3-hydroxy-L-tryptophan","type":"exact"},{"name":"3-hydroxylated L-tryptophan","type":"exact"},{"name":"3-hydroxytryptophan","type":"exact"},{"name":"3HyTrp","type":"exact"},{"name":"MOD_RES 3-hydroxytryptophan","type":"exact"},{"name":"beta-hydroxytryptophan","type":"exact"}],"termid":"MOD:00327"}


id: PBO:0061557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-nucleotidase domain containing 1","termid":"PBO:0061557"}


id: SO:0001973
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A histone 3 modification where the modification is the acetylation of the residue.","definition_xrefs":["EBI:nj","ISBN:0815341059","SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_acetylation_site","termid":"SO:0001702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"histone_3_acetylation_site","synonyms":[{"name":"H3ac","type":"exact"},{"name":"histone 3 acetylation site","type":"exact"}],"termid":"SO:0001973"}


id: PBO:0001141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"traub family protein involved in ribosome biogenesis (predicted)","termid":"PBO:0001141"}


id: GO:0032993
data:
  {"annotated_genes":["SJAG_01971","SJAG_01873","SJAG_02098","SJAG_01864","SJAG_03722","SJAG_02172","SJAG_00696","SJAG_03092","SJAG_02074","SJAG_02800","SJAG_02348","SJAG_03542","SJAG_04150","SJAG_00884","SJAG_03047","SJAG_01378","SJAG_01698","SJAG_01624","SJAG_01354","SJAG_01777","SJAG_05257","SJAG_02607","SJAG_00327","SJAG_02818","SJAG_00857","SJAG_04995","SJAG_04062","SJAG_02362","SJAG_00729","SJAG_03451","SJAG_03685","SJAG_01523","SJAG_03942","SJAG_02667","SJAG_00307","SJAG_03855","SJAG_01762","SJAG_04210","SJAG_02182","SJAG_00335","SJAG_05979","SJAG_03927","SJAG_02394","SJAG_03120","SJAG_04341","SJAG_01267","SJAG_03780","SJAG_00814","SJAG_03941","SJAG_00336","SJAG_01010","SJAG_00874","SJAG_00302","SJAG_00272","SJAG_05197","SJAG_00536","SJAG_05239","SJAG_04877","SJAG_02627","SJAG_03543","SJAG_04245","SJAG_00863","SJAG_00303","SJAG_04994","SJAG_02194","SJAG_03206","SJAG_05301"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[69971,74476],"is_not":false,"summary":null,"term":"GO:0032993"},{"annotations":[70249,72780,74810,75141],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005658"},{"annotations":[102065],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043505"},{"annotations":[110384,63197],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990879"},{"annotations":[70766,75046,76884,102826],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0043625"},{"annotations":[77109,116273,80216],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005662"},{"annotations":[57173,78140,62597,93903,60986,107843,111396,76790,58312,61225,71952,111653,113190,113579,73692,108057,65938],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031261"},{"annotations":[70177,79956,79207,80265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000811"},{"annotations":[119602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140573"},{"annotations":[77629,112842,76284,72463,77062,68550],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0043599"},{"annotations":[58311,65937,61224,103320,107846,62596,57172,71570,113193,108060,73690,111399,110572,111656,60985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005656"},{"annotations":[112525],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043601"},{"annotations":[60269,73051,112587,112616,112589,73716,60880,76630,112614],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000786"},{"annotations":[79746,115966,91802,95059,99719,89717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070187"},{"annotations":[107945],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000782"},{"annotations":[70190,77536,77183],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097550"}]},"cv_name":"cellular_component","definition":"A macromolecular complex containing both protein and DNA molecules.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing 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complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null,"PMID:24184107":null},"synonyms":[{"name":"DNA-protein complex","type":"exact"}],"termid":"GO:0032993","terms_by_termid":{"GO:0000782":null,"GO:0000786":null,"GO:0000811":null,"GO:0005656":null,"GO:0005658":null,"GO:0005662":null,"GO:0031261":null,"GO:0032993":null,"GO:0043505":null,"GO:0043599":null,"GO:0043601":null,"GO:0043625":null,"GO:0070187":null,"GO:0097550":null,"GO:0140573":null,"GO:1990879":null}}


id: PBO:0111068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fbp1 upstream regulatory lncRNA c","termid":"PBO:0111068"}


id: MOD:01393
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two serine residues and a cysteine residue by formation of a pyridine-2,5-dicarboxylic acid.","definition_xrefs":["RESID:AA0470","PubMed:10625477","PubMed:1880060","PubMed:7844053"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridinyl ring crosslinked residues","termid":"MOD:01425"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"},{"relation_name":"is_a","term_name":"crosslinked L-serine residue","termid":"MOD:02055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-cysteine pyridine-2,5-dicarboxylic acid","synonyms":[{"name":"6-[(1R)-1-amino-2-sulfanylethyl]pyridine-2,5-dicarboxylic acid","type":"exact"},{"name":"L-cysteine pyridine-2,5-dicarboxylic acid","type":"exact"}],"termid":"MOD:01393"}


id: MONDO:0032685
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development","secondary_identifiers":["UMLS:C5193037","MEDGEN:1673640","OMIM:618339"],"synonyms":[{"name":"CASGID","type":"related"},{"name":"INFANTILE CATARACT, SKIN ABNORMALITIES, GLUTAMATE EXCESS, AND IMPAIRED INTELLECTUAL DEVELOPMENT","type":"related"},{"name":"infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development","type":"exact"}],"termid":"MONDO:0032685","xrefs":{"Monarch":{"xref_id":"0032685"}}}


id: PBO:0077818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor protein p53 inducible nuclear protein 2","termid":"PBO:0077818"}


id: MONDO:0014353
data:
  {"annotated_genes":["SJAG_00978","SJAG_03723"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86373,86374],"is_not":false,"summary":null,"term":"MONDO:0014353"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of multiple glycosylation","termid":"MONDO:0017749"},{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00978":null,"SJAG_03723":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"immunodeficiency 23","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:862808","UMLS:C4014371","Orphanet:443811","DOID:0111953","MESH:C565684","OMIM:216920","GARD:4331","OMIM:615816"],"synonyms":[{"name":"CID due to PGM3 deficiency","type":"exact"},{"name":"IMD23","type":"exact"},{"name":"PGM3-CDG","type":"exact"},{"name":"PGM3-EXACT congenital disorder of glycosylation","type":"exact"},{"name":"combined immunodeficiency due to PGM3 deficiency","type":"exact"},{"name":"combined inflammatory and immunologic defect","type":"exact"},{"name":"immunodeficiency 23","type":"exact"},{"name":"immunodeficiency type 23","type":"exact"},{"name":"immunodeficiency with hyper IgE and cognitive impairment","type":"exact"},{"name":"immunodeficiency-vasculitis-myoclonus syndrome","type":"exact"},{"name":"phosphoglucomutase 3 deficiency","type":"exact"},{"name":"phosphoglucomutase deficiency type 3","type":"exact"}],"termid":"MONDO:0014353","terms_by_termid":{"MONDO:0014353":null},"xrefs":{"Monarch":{"xref_id":"0014353"}}}


id: MONDO:0016897
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of chromosome 19","termid":"MONDO:0016881"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of the short arm of chromosome 19","secondary_identifiers":["GARD:20819","UMLS:C5679672","icd11.foundation:1325170119","MEDGEN:1826022","Orphanet:261983"],"synonyms":[{"name":"partial deletion of chromosome 19p","type":"exact"},{"name":"partial deletion of the short arm of chromosome type 19","type":"exact"},{"name":"partial monosomy of chromosome 19p","type":"exact"},{"name":"partial monosomy of the short arm of chromosome 19","type":"exact"}],"termid":"MONDO:0016897","xrefs":{"Monarch":{"xref_id":"0016897"}}}


id: PBO:0061268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOVA1 divergent transcript","termid":"PBO:0061268"}


id: GO:0060054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of epithelial cell proliferation, contributing to the restoration of integrity to a damaged tissue following an injury.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of epithelial cell proliferation","termid":"GO:0050679"},{"relation_name":"part_of","term_name":"wound healing","termid":"GO:0042060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of epithelial cell proliferation involved in wound healing","termid":"GO:0060054"}


id: GO:1905283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of epidermal growth factor receptor signaling pathway involved in heart process.","definition_xrefs":["PMID:23069713","GO_REF:0000058","GOC:bc","GOC:BHF","GOC:TermGenie","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epidermal growth factor receptor signaling pathway","termid":"GO:0042059"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of epidermal growth factor receptor signaling pathway involved in heart process","termid":"GO:1905282"},{"relation_name":"negatively_regulates","term_name":"epidermal growth factor receptor signaling pathway involved in heart 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process","type":"exact"},{"name":"downregulation of EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"downregulation of EGFR signaling pathway involved in heart process","type":"exact"},{"name":"downregulation of ERBB1 signaling pathway involved in cardiac process","type":"related"},{"name":"downregulation of ERBB1 signaling pathway involved in heart process","type":"exact"},{"name":"downregulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"downregulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"exact"},{"name":"downregulation of epidermal growth factor receptor signalling pathway involved in cardiac process","type":"related"},{"name":"downregulation of epidermal growth factor receptor signalling pathway involved in heart process","type":"exact"},{"name":"downregulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process","type":"related"},{"name":"downregulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process","type":"exact"},{"name":"inhibition of EGF receptor signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of EGF receptor signaling pathway involved in heart process","type":"narrow"},{"name":"inhibition of EGF receptor signalling pathway involved in cardiac process","type":"related"},{"name":"inhibition of EGF receptor signalling pathway involved in heart process","type":"narrow"},{"name":"inhibition of EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of EGFR signaling pathway involved in heart process","type":"narrow"},{"name":"inhibition of ERBB1 signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of ERBB1 signaling pathway involved in heart process","type":"narrow"},{"name":"inhibition of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of epidermal growth factor receptor signaling pathway involved in heart process","type":"narrow"},{"name":"inhibition of epidermal growth factor receptor signalling pathway involved in cardiac process","type":"related"},{"name":"inhibition of epidermal growth factor receptor signalling pathway involved in heart process","type":"narrow"},{"name":"inhibition of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process","type":"narrow"},{"name":"negative regulation of EGF receptor signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of EGF receptor signaling pathway involved in heart process","type":"exact"},{"name":"negative regulation of EGF receptor signalling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of EGF receptor signalling pathway involved in heart process","type":"exact"},{"name":"negative regulation of EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of EGFR signaling pathway involved in heart process","type":"exact"},{"name":"negative regulation of ERBB1 signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of ERBB1 signaling pathway involved in heart process","type":"exact"},{"name":"negative regulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of epidermal growth factor receptor signalling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of epidermal growth factor receptor signalling pathway involved in heart process","type":"exact"},{"name":"negative regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process","type":"exact"}],"termid":"GO:1905283"}


id: PBO:0043774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ceruloplasmin","termid":"PBO:0043774"}


id: GO:0060194
data:
  {"annotated_genes":["SJAG_00266"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107984],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060195"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA.","definition_xrefs":["GOC:tb","GOC:dph","PMID:18075583","GOC:jp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated transcription","termid":"GO:0006355"},{"relation_name":"regulates","term_name":"antisense RNA transcription","termid":"GO:0009300"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00266":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006351","GO:0006355","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of antisense RNA transcription","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0060194","terms_by_termid":{"GO:0060195":null}}


id: PBO:0090589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial MIB complex subunit, human DNAJC11 ortholog","termid":"PBO:0090589"}


id: PBO:0027518
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_horsetail_movement","termid":"PBO:0027518"}


id: MONDO:0009936
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Primary pulmonary hypoplasia is a rare, isolated, genetic developmental defect during embryogenesis characterized by congential malformation of pulmonary parenchyma with absence of other anomalies. Neonatally patients present with decreased breath sounds, small lung volume and severe respiratory distress that is not responsive to aggressive treatment (including surfactant instillation/ mechanical respiratory support). It is usually not compatible with life.","definition_xrefs":["Orphanet:2257"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial primary pulmonary hypoplasia","secondary_identifiers":["ICD9:748.5","MEDGEN:141589","GARD:16591","OMIM:265430","SCTID:277656005","UMLS:C0456891","icd11.foundation:1778475393"],"synonyms":[{"name":"lung agenesis","type":"related"},{"name":"primary pulmonary hypoplasia","type":"related"},{"name":"pulmonary hypoplasia, primary","type":"related"}],"termid":"MONDO:0009936","xrefs":{"Monarch":{"xref_id":"0009936"}}}


id: MONDO:0017226
data:
  {"annotated_genes":["SJAG_02263","SJAG_00564"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86550],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009843"},{"annotations":[87206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012824"}]},"cv_name":"mondo","definition":"Pelizaeus-Merzbacher like disease (PMLD) is an autosomal recessive leukodystrophy sharing identical clinical and radiological features as X-linked Pelizaeus-Merzbacher disease (PMD).","definition_xrefs":["Orphanet:280270"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00564":null,"SJAG_02263":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"Pelizaeus-Merzbacher-like disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:12300","SCTID:717042001","icd11.foundation:1101042369","UMLS:C4274084","MEDGEN:894734","NANDO:1200577","NANDO:2201289"],"synonyms":[{"name":"PMLD","type":"exact"}],"termid":"MONDO:0017226","terms_by_termid":{"MONDO:0009843":null,"MONDO:0012824":null},"xrefs":{"Monarch":{"xref_id":"0017226"}}}


id: PBO:0048841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceronephosphate O-acyltransferase","termid":"PBO:0048841"}


id: PBO:0043545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type I alpha 2 chain","termid":"PBO:0043545"}


id: PBO:0074457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingomyelin phosphodiesterase 2","termid":"PBO:0074457"}


id: MOD:00598
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-(2-hydroxyethyl)cysteine","definition_xrefs":["Unimod:278","PubMed:15351294"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-(2-hydroxyethyl)cysteine","synonyms":[{"name":"Ethanolation of Cys","type":"related"},{"name":"Ethanolyl","type":"related"}],"termid":"MOD:00598"}


