# terms

id: PBO:0049776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 9 pseudogene 3","termid":"PBO:0049776"}


id: PBO:0052850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 4-6","termid":"PBO:0052850"}


id: PBO:0002442
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.50","termid":"PBO:0002442"}


id: GO:0160185
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of the enzyme phospholipase C.","definition_xrefs":["PMID:28130414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase activator activity","termid":"GO:0016004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0030234","GO:0140677"],"is_obsolete":false,"name":"phospholipase C activator activity","termid":"GO:0160185"}


id: GO:0098943
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of neurotransmitter receptor from the postsynaptic endosome in tranpsort vesicles to the lysosome for degradation.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"},{"relation_name":"is_a","term_name":"endosome to lysosome transport","termid":"GO:0008333"},{"relation_name":"is_a","term_name":"protein localization to lysosome","termid":"GO:0061462"},{"relation_name":"is_a","term_name":"establishment of protein localization to vacuole","termid":"GO:0072666"},{"relation_name":"is_a","term_name":"neurotransmitter receptor transport","termid":"GO:0099637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"neurotransmitter receptor transport, postsynaptic endosome to lysosome","synonyms":[{"name":"postsynaptic neurotransmitter receptor endosomal trafficking","type":"broad"}],"termid":"GO:0098943"}


id: PBO:0041518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 15 open reading frame 62","termid":"PBO:0041518"}


id: PBO:0057979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3714","termid":"PBO:0057979"}


id: MONDO:0005940
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with viruses of the genus respirovirus, family paramyxoviridae. Host cell infection occurs by adsorption, via hemagglutinin, to the cell surface.","definition_xrefs":["MESH:D010253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Paramyxoviridae infectious disease","termid":"MONDO:0005896"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"respirovirus infectious disease","secondary_identifiers":["UMLS:C3714630","EFO:0007465","MEDGEN:811417"],"synonyms":[{"name":"infections, Respirovirus","type":"related"}],"termid":"MONDO:0005940","xrefs":{"Monarch":{"xref_id":"0005940"}}}


id: PBO:0047666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fukutin","termid":"PBO:0047666"}


id: PBO:0108570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Las1","termid":"PBO:0108570"}


id: MONDO:0034443
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genetic non-acquired premature ovarian failure (obsolete MONDO:0034443)","secondary_identifiers":["Orphanet:485382"],"termid":"MONDO:0034443","xrefs":{"Monarch":{"xref_id":"0034443"}}}


id: MONDO:0013514
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hypotrichosis in which the cause of the disease is a mutation in the KRT74 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypotrichosis","termid":"MONDO:0003037"},{"relation_name":"is_a","term_name":"hypotrichosis simplex of the scalp","termid":"MONDO:0019575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypotrichosis 3","secondary_identifiers":["OMIM:613981","MEDGEN:462782","GARD:18094","DOID:0110700","UMLS:C3151432"],"synonyms":[{"name":"HTSS2","type":"exact"},{"name":"HYPT3","type":"exact"},{"name":"Htss2","type":"exact"},{"name":"KRT74 hypotrichosis","type":"exact"},{"name":"hypotrichosis 3","type":"exact"},{"name":"hypotrichosis caused by mutation in KRT74","type":"exact"},{"name":"hypotrichosis simplex of the scalp 2","type":"exact"},{"name":"hypotrichosis type 3","type":"exact"},{"name":"hypt3","type":"exact"}],"termid":"MONDO:0013514","xrefs":{"Monarch":{"xref_id":"0013514"}}}


id: PR:Q10334
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutamate-pyruvate aminotransferase AlaA that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alanine aminotransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC582.08","secondary_identifiers":["UniProtKB:Q10334"],"synonyms":[{"name":"GPT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-alaA","type":"exact"},{"name":"glutamate pyruvate transaminase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"glutamic--alanine transaminase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"glutamic--pyruvic transaminase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10334"}


id: GO:0021543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the pallium over time, from its formation to the mature structure. The pallium is the roof region of the telencephalon.","definition_xrefs":["GOC:jid","GOC:cls","GO_REF:0000021","GOC:dgh","PMID:12626695","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"telencephalon development","termid":"GO:0021537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pallium development","termid":"GO:0021543"}


id: GO:0052819
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: heteroglycan + GDP-mannose = (1->2)-alpha-D-mannosylheteroglycan + GDP.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete heteroglycan 2-alpha-mannosyltransferase activity (obsolete GO:0052819)","synonyms":[{"name":"heteropolysaccharide 2-alpha-mannosyltransferase activity","type":"exact"}],"termid":"GO:0052819"}


id: MONDO:0017453
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Foetal parvovirus syndrome is a foetopathy likely to occur when a pregnant woman is infected by parvovirus B19. In adults, the virus causes a butterfly erythema infectiosum (also called Fifth Disease; 'slapped cheek disease') and flu-like symptoms with symmetric polyarthralgias, which usually do not warrant prenatal diagnosis.","definition_xrefs":["Orphanet:295"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infectious embryofetopathy","termid":"MONDO:0016511"},{"relation_name":"is_a","term_name":"Parvoviridae infectious disease","termid":"MONDO:0025371"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fetal parvovirus syndrome","secondary_identifiers":["GARD:4236","MEDGEN:443992","icd11.foundation:648536096","MESH:C536301","SCTID:715197005","UMLS:C2931167"],"synonyms":[{"name":"Human parvovirus B19 caused infectious embryofetopathy","type":"exact"},{"name":"Human parvovirus B19 infectious embryofetopathy","type":"exact"},{"name":"Maternofetal infection by parvovirus","type":"related"},{"name":"Parvovirus B19 antenatal infection","type":"related"},{"name":"Parvovirus antenatal infection","type":"exact"},{"name":"fifth disease","type":"related"},{"name":"mother-to-child transmission of parvovirus syndrome","type":"exact"}],"termid":"MONDO:0017453","xrefs":{"Monarch":{"xref_id":"0017453"}}}


id: GO:0110093
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The area of a motile nucleus furthest from the direction of movement.","definition_xrefs":["PMID:24335254","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575"],"is_obsolete":false,"name":"nucleus lagging edge","termid":"GO:0110093"}


id: PBO:0086971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulatory subunit of Cdc7p-Dbf4p kinase complex; required for Cdc7p kinase activity and initiation of DNA replication; phosphorylates the Mcm2-7 family of proteins; cell cycle regulated; relative distribution to the nucleus increases upon DNA replication stress; co-expression of human CDC7 and DBF4 complements single cdc7 or dbf4 null mutations or the cdc7 dbf4 double null mutation","termid":"PBO:0086971"}


id: PBO:0069677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 954, pseudogene","termid":"PBO:0069677"}


id: GO:0004968
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with gonadotropin-releasing hormone to initiate a change in cell activity. Gonadotropin-releasing hormone (GnRH) is a peptide hormone responsible for the release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) from the anterior pituitary. GnRH is synthesized and released by the hypothalamus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"},{"relation_name":"is_a","term_name":"protein-hormone receptor activity","termid":"GO:0016500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"gonadotropin-releasing hormone receptor activity","synonyms":[{"name":"GnRH receptor activity","type":"exact"},{"name":"gonadotrophin-releasing hormone receptor activity","type":"exact"}],"termid":"GO:0004968"}


id: PBO:0005502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbohydrate kinase domain family protein","termid":"PBO:0005502"}


id: MONDO:0001557
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A bursitis that involves the olecranon.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enthesopathy","termid":"MONDO:0002183"},{"relation_name":"is_a","term_name":"bursitis","termid":"MONDO:0002471"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olecranon bursitis","secondary_identifiers":["ICD10CM:M70.2","MEDGEN:538225","DOID:12581","ICD9:726.33","SCTID:425940002","UMLS:C0263962"],"synonyms":[{"name":"Miners' elbow","type":"exact"},{"name":"bursitis of elbow","type":"exact"},{"name":"bursitis of elbow region","type":"exact"},{"name":"bursitis of olecranon","type":"exact"},{"name":"capped elbow","type":"exact"},{"name":"elbow bursitis","type":"exact"},{"name":"elbow bursitis (& olecranon)","type":"exact"},{"name":"miner's elbow","type":"exact"},{"name":"olecranon bursitis","type":"exact"},{"name":"shoe boil","type":"exact"}],"termid":"MONDO:0001557","xrefs":{"Monarch":{"xref_id":"0001557"}}}


id: MONDO:0001218
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An upper respiratory tract disease which involves inflammation of both larynx and pharynx.","definition_xrefs":["DOID:11195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"upper respiratory tract disorder","termid":"MONDO:0004867"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute laryngopharyngitis","secondary_identifiers":["ICD10CM:J06.0","SCTID:55355000","UMLS:C0155817","ICD9:465.0","icd11.foundation:1528782604","MEDGEN:510095"],"termid":"MONDO:0001218","xrefs":{"Monarch":{"xref_id":"0001218"}}}


id: GO:0052012
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of chitin in the host cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete catabolism by symbiont of host cell wall chitin (obsolete GO:0052012)","synonyms":[{"name":"catabolism by organism of host cell wall chitin","type":"exact"}],"termid":"GO:0052012"}


id: FYPO:0005639
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to iron ion starvation is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal RNA level during cellular response to iron ion starvation","synonyms":[{"name":"normal RNA accumulation during cellular response to iron ion starvation","type":"related"},{"name":"normal RNA level during cellular response to iron ion starvation during mitotic cell cycle","type":"related"},{"name":"normal RNA level during cellular response to iron ion starvation during vegetative growth","type":"exact"},{"name":"normal RNA level during cellular response to iron starvation","type":"exact"},{"name":"normal RNA level during iron ion starvation","type":"exact"},{"name":"normal mRNA level during cellular response to iron ion starvation","type":"narrow"},{"name":"normal transcript level during cellular response to iron ion starvation","type":"exact"}],"termid":"FYPO:0005639"}


id: PR:000027571
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3 that is a translation product of the Schizosaccharomyces pombe 972h- hht2 gene or a 1:1 ortholog thereof in fungi.","definition_xrefs":["PMID:11242054","PMID:20929775","PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fungal histone H3.2","pombase_gene_id":"SPBC8D2.04","synonyms":[{"name":"hht2","type":"exact"}],"termid":"PR:000027571"}


id: PBO:0083987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glutamyl-tRNA synthetase (GluRS); forms a complex with methionyl-tRNA synthetase (Mes1p) and Arc1p; complex formation increases the catalytic efficiency of both tRNA synthetases and ensures their correct localization to the cytoplasm; protein abundance increases in response to DNA replication stress","termid":"PBO:0083987"}


id: MONDO:1011471
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Amyloidosis that occurs in goat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amyloidosis, non-human animal","termid":"MONDO:1011415"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyloidosis, goat","secondary_identifiers":["OMIA:000037-9925"],"termid":"MONDO:1011471","xrefs":{"Monarch":{"xref_id":"1011471"}}}


id: GO:1990145
data:
  {"annotated_genes":["SJAG_06284","SJAG_03262","SJAG_00269"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74274,95585,112085],"is_not":false,"summary":null,"term":"GO:1990145"}]},"cv_name":"biological_process","definition":"Suppression of the occurrence of translational errors, such as codon-anticodon mis-paring, during the process of translation of a protein using an mRNA template.","definition_xrefs":["ISBN:9781936113460","GOC:hjd","PMID:21841312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule biosynthetic process","termid":"GO:0009059"},{"relation_name":"part_of","term_name":"translation","termid":"GO:0006412"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00269":null,"SJAG_03262":null,"SJAG_06284":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"maintenance of translational fidelity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:1990145","terms_by_termid":{"GO:1990145":null}}


id: GO:0141053
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of ubiquitin to a histone H2A substrate.","definition_xrefs":["PMID:25303536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone ubiquitin ligase activity","termid":"GO:0140852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004842"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0004842","GO:0016746","GO:0019787","GO:0016740","GO:0140096"],"is_obsolete":false,"name":"histone H2A ubiquitin ligase activity","termid":"GO:0141053"}


id: GO:0051210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell irreversibly increases in size uniformly in all directions. In general, a rounded cell morphology reflects isotropic cell growth.","definition_xrefs":["GOC:jid","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell growth","termid":"GO:0016049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"isotropic cell growth","synonyms":[{"name":"uniform cell growth","type":"related"}],"termid":"GO:0051210"}


id: PBO:0061578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NTM antisense RNA 1","termid":"PBO:0061578"}


id: MONDO:0005844
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An eyelid cyst caused by the blockage of a meibomian gland.","definition_xrefs":["NCIT:C26717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"internal hordeolum","termid":"MONDO:0004917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005328"],"is_obsolete":false,"name":"chalazion","secondary_identifiers":["DOID:9903","MEDGEN:869","ICD9:373.2","EFO:0007363","ICD10CM:H00.1","SCTID:1482004","icd11.foundation:777918741","MESH:D017043","UMLS:C0007933"],"synonyms":[{"name":"Meibomian cyst","type":"related"},{"name":"chalazia","type":"related"},{"name":"chalazion","type":"exact"},{"name":"cyst, Meibomian","type":"related"},{"name":"meibomian gland lipogranuloma","type":"exact"}],"termid":"MONDO:0005844","xrefs":{"Monarch":{"xref_id":"0005844"}}}


id: PATO:0001053
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An angle which is less than 180 degrees to another entity.","definition_xrefs":["maths.org:maths.org"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angle","termid":"PATO:0002326"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"convex angle to","termid":"PATO:0001053"}


id: PATO:0002111
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cellular quality inhering in a bearer by virtue of its lacking few of the cellular characteristics which would allow it to be fully differentiated.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"differentiated","termid":"PATO:0002099"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"moderately well differentiated","termid":"PATO:0002111"}


id: MONDO:0003520
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete malignant acrospiroma (obsolete MONDO:0003520)","termid":"MONDO:0003520","xrefs":{"Monarch":{"xref_id":"0003520"}}}


id: PBO:0089946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S33","termid":"PBO:0089946"}


id: PBO:0040674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B cell receptor associated protein 31 pseudogene 2","termid":"PBO:0040674"}


id: PR:Q9P7H0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An H/ACA ribonucleoprotein complex subunit 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01976","PANTHER:PTHR23105:SF12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H/ACA ribonucleoprotein complex subunit 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1782.10c","secondary_identifiers":["UniProtKB:Q9P7H0"],"synonyms":[{"name":"H/ACA snoRNP protein NHP2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"P17-nhp2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NHP2","type":"exact"},{"name":"high mobility group-like nuclear protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7H0"}


id: PBO:0043797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic polyadenylated homeobox like 2","termid":"PBO:0043797"}


id: GO:2000646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of receptor catabolic process.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of macromolecule metabolic process","termid":"GO:0010604"},{"relation_name":"is_a","term_name":"regulation of receptor catabolic process","termid":"GO:2000644"},{"relation_name":"positively_regulates","term_name":"receptor catabolic process","termid":"GO:0032801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044248"},{"rel_name":"positively_regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248"],"is_obsolete":false,"name":"positive regulation of receptor catabolic process","synonyms":[{"name":"positive regulation of receptor breakdown","type":"exact"},{"name":"positive regulation of receptor catabolism","type":"exact"},{"name":"positive regulation of receptor degradation","type":"exact"}],"termid":"GO:2000646"}


id: PBO:0081245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 16","termid":"PBO:0081245"}


id: PBO:0029091
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-short_cytoplasmic_microtubules","termid":"PBO:0029091"}


id: MONDO:0013423
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Immunodeficiency due to MASP-2 deficiency is a rare, genetic immunodeficiency due to a complement cascade protein anomaly characterized by low serum levels of MASP-2 and a variable susceptibility to bacterial infections (e.g. pulmonary tuberculosis, pneumococcal pneumonia, skin abscesses and sepsis), and autoimmune diseases (e.g. inflammatory lung disease, cystic fibrosis, systemic lupus erythematosus). In many cases it remains asymptomatic.","definition_xrefs":["Orphanet:331187"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of lectin complement activation pathway","termid":"MONDO:0044209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency due to MASP-2 deficiency","secondary_identifiers":["MESH:C565360","NANDO:2200793","OMIM:613791","UMLS:C3151085","GARD:17512","MEDGEN:462435"],"synonyms":[{"name":"MASP2 deficiency","type":"related"},{"name":"immunodeficiency due to MASP-2 deficiency","type":"exact"},{"name":"lectin complement activation pathway, defect in, 2","type":"related"}],"termid":"MONDO:0013423","xrefs":{"Monarch":{"xref_id":"0013423"}}}


id: GO:0000922
data:
  {"annotated_genes":["SJAG_01613","SJAG_01224","SJAG_02368","SJAG_03915","SJAG_04745","SJAG_02624","SJAG_01464","SJAG_02241","SJAG_02761","SJAG_01805","SJAG_02320","SJAG_00918","SJAG_03073","SJAG_01546","SJAG_05196"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[118627,93583,91080,93656,99012,106892,96558,99702,94556,102602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090619"},{"annotations":[98415,107296,99019,117934],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990537"},{"annotations":[117935,100173],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097431"},{"annotations":[101227,94562],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005827"}]},"cv_name":"cellular_component","definition":"Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"spindle","termid":"GO:0005819"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00918":null,"SJAG_01224":null,"SJAG_01464":null,"SJAG_01546":null,"SJAG_01613":null,"SJAG_01805":null,"SJAG_02241":null,"SJAG_02320":null,"SJAG_02368":null,"SJAG_02624":null,"SJAG_02761":null,"SJAG_03073":null,"SJAG_03915":null,"SJAG_04745":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"spindle pole","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0030615"],"termid":"GO:0000922","terms_by_termid":{"GO:0005827":null,"GO:0090619":null,"GO:0097431":null,"GO:1990537":null}}


id: PBO:0089209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, middle-meiotic Cuf2","termid":"PBO:0089209"}


id: PBO:0027736
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_nucleolus_during_mitotic_telophase","termid":"PBO:0027736"}


id: GO:1903833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cellular response to amino acid starvation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:25002487","PMID:7623840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to nutrient levels","termid":"GO:0032109"},{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"regulation of cellular response to amino acid starvation","termid":"GO:1903832"},{"relation_name":"positively_regulates","term_name":"cellular response to amino acid starvation","termid":"GO:0034198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cellular response to amino acid starvation","synonyms":[{"name":"activation of cellular response to amino acid starvation","type":"narrow"},{"name":"up regulation of cellular response to amino acid starvation","type":"exact"},{"name":"up-regulation of cellular response to amino acid starvation","type":"exact"},{"name":"upregulation of cellular response to amino acid starvation","type":"exact"}],"termid":"GO:1903833"}


id: PBO:0005817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OPT oligopeptide transporter family protein (predicted)","termid":"PBO:0005817"}


id: PBO:0028180
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cysteine_synthase_activity","termid":"PBO:0028180"}


id: GO:0042048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The behavior of an organism in response to an odor.","definition_xrefs":["GOC:pr","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemosensory behavior","termid":"GO:0007635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olfactory behavior","synonyms":[{"name":"behavioral response to scent","type":"exact"},{"name":"behavioral response to smell","type":"exact"},{"name":"behavioural response to odour","type":"exact"},{"name":"behavioural response to scent","type":"exact"},{"name":"behavioural response to smell","type":"exact"},{"name":"olfactory behaviour","type":"exact"}],"termid":"GO:0042048"}


id: PR:O74412
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cbf12 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor cbf12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1223.13","synonyms":[{"name":"C-promoter element-binding factor-like protein 12 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cbf12","type":"exact"}],"termid":"PR:O74412"}


id: MONDO:0018504
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from the stomach and is characterized by the absence of microscopic features of glandular or squamous differentiation.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastric carcinoma","termid":"MONDO:0004950"},{"relation_name":"is_a","term_name":"undifferentiated carcinoma","termid":"MONDO:0005617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"undifferentiated carcinoma of stomach","secondary_identifiers":["MEDGEN:237029","GARD:21759","ONCOTREE:USTAD","UMLS:C1336858","NCIT:C5476","Orphanet:423786","SCTID:766757006"],"synonyms":[{"name":"Gastric undifferentiated carcinoma","type":"exact"},{"name":"anaplastic carcinoma of stomach","type":"exact"},{"name":"anaplastic carcinoma of the stomach","type":"exact"},{"name":"anaplastic gastric carcinoma","type":"exact"},{"name":"stomach undifferentiated carcinoma","type":"exact"},{"name":"undifferentiated carcinoma of stomach","type":"exact"},{"name":"undifferentiated carcinoma of the stomach","type":"exact"},{"name":"undifferentiated gastric (stomach) cancer","type":"exact"},{"name":"undifferentiated gastric carcinoma","type":"exact"},{"name":"undifferentiated stomach adenocarcinoma","type":"related"}],"termid":"MONDO:0018504","xrefs":{"Monarch":{"xref_id":"0018504"}}}


id: PBO:0061284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore associated protein 1 pseudogene 5","termid":"PBO:0061284"}


id: PBO:0049660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H4 clustered histone 14","termid":"PBO:0049660"}


id: MONDO:0010739
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Taqi polymorphism","secondary_identifiers":["UMLS:C1839238","MEDGEN:374172","OMIM:313480"],"synonyms":[{"name":"TAQ1","type":"related"},{"name":"TaqI polymorphism","type":"related"},{"name":"Taqi polymorphism","type":"exact"}],"termid":"MONDO:0010739","xrefs":{"Monarch":{"xref_id":"0010739"}}}


id: GO:0008371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. These are terms that have been removed from the active process ontology.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete biological process (obsolete GO:0008371)","termid":"GO:0008371"}


id: GO:0021770
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the parahippocampal gyrus over time from its initial formation until its mature state. The parahippocampal gyrus is a ridge in the cerebral cortex.","definition_xrefs":["GOC:dph","GOC:jid","GOC:cls","ISBN:0878937420","GO_REF:0000021","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"limbic system development","termid":"GO:0021761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"parahippocampal gyrus development","secondary_identifiers":["Wikipedia:parahippocampal_gyrus"],"synonyms":[{"name":"hippocampal gyrus development","type":"exact"}],"termid":"GO:0021770"}


id: GO:0140434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of protein localization to a meiotic spindle pole body.","definition_xrefs":["PMID:22438582"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"is_a","term_name":"regulation of protein localization to meiotic spindle pole body","termid":"GO:0140433"},{"relation_name":"is_a","term_name":"positive regulation of protein localization to spindle pole body","termid":"GO:1902365"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"protein localization to meiotic spindle pole body","termid":"GO:1902441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to meiotic spindle pole body","termid":"GO:0140434"}


id: GO:2001264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of C-C chemokine binding.","definition_xrefs":["GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of C-C chemokine binding (obsolete GO:2001264)","termid":"GO:2001264"}


id: MONDO:0004868
data:
  {"annotated_genes":["SJAG_03363","SJAG_00938","SJAG_03011","SJAG_05194"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86587],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011559"},{"annotations":[86834],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013995"},{"annotations":[86771,86772],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030810"},{"annotations":[85676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0031040"},{"annotations":[85145],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010939"},{"annotations":[86710],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011156"},{"annotations":[85342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011214"}]},"cv_name":"mondo","definition":"A disease involving the biliary tree.","direct_ancestors":[{"relation_name":"is_a","term_name":"hepatobiliary disorder","termid":"MONDO:0002515"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00938":null,"SJAG_03011":null,"SJAG_03363":null,"SJAG_05194":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"biliary tract disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:105997008","DOID:9741","UMLS:C0549613","EFO:0009534","ICD9:576.9","MESH:D001660","MEDGEN:108201"],"synonyms":[{"name":"biliary tree disease","type":"exact"},{"name":"biliary tree disease or disorder","type":"exact"},{"name":"disease of biliary tree","type":"exact"},{"name":"disease or disorder of biliary tree","type":"exact"},{"name":"disorder of biliary tree","type":"exact"}],"termid":"MONDO:0004868","terms_by_termid":{"MONDO:0010939":null,"MONDO:0011156":null,"MONDO:0011214":null,"MONDO:0011559":null,"MONDO:0013995":null,"MONDO:0030810":null,"MONDO:0031040":null},"xrefs":{"Monarch":{"xref_id":"0004868"}}}


id: FYPO:0004770
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-glutamine measured in the vacuole is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in vacuole","termid":"FYPO:0001730"},{"relation_name":"is_a","term_name":"increased cellular glutamine level","termid":"FYPO:0006955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased vacuolar glutamine level","synonyms":[{"name":"increased level of glutamine in vacuole","type":"exact"},{"name":"increased vacuolar L-glutamine level","type":"exact"},{"name":"increased vacuolar glutamine level during mitotic cell cycle","type":"related"},{"name":"increased vacuolar glutamine level during vegetative growth","type":"exact"}],"termid":"FYPO:0004770"}


id: PBO:0054281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1672","termid":"PBO:0054281"}


id: PBO:0031408
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-pear-shaped_cell","termid":"PBO:0031408"}


id: PBO:0001770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Ltv1 (predicted)","termid":"PBO:0001770"}


id: GO:1990113
data:
  {"annotated_genes":["SJAG_04012","SJAG_04093"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78270,117855],"is_not":false,"summary":null,"term":"GO:1990113"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the eukaryotic RNA polymerase I complex.","definition_xrefs":["GOC:rb","PMID:23459708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04012":null,"SJAG_04093":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"RNA polymerase I assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"DNA-directed RNA polymerase I complex assembly","type":"exact"},{"name":"RNA Polymerase I complex assembly","type":"exact"}],"termid":"GO:1990113","terms_by_termid":{"GO:1990113":null}}


id: PBO:0052706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 17 pseudogene 7","termid":"PBO:0052706"}


id: PBO:0083939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma-adaptin; large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in vesicle mediated transport","termid":"PBO:0083939"}


id: MONDO:0008368
data:
  {"annotated_genes":["SJAG_01183"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84869],"is_not":false,"summary":null,"term":"MONDO:0008368"}]},"cv_name":"mondo","definition":"Autosomal dominant distal renal tubular acidosis (AD dRTA) is an inherited form of distal renal tubular acidosis (dRTA) characterized by hyperchloremic metabolic acidosis often but not always associated with hypokalemia.","definition_xrefs":["Orphanet:93608"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"distal renal tubular acidosis","termid":"MONDO:0015827"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01183":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant distal renal tubular acidosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:179800","GARD:4668"],"synonyms":[{"name":"AD dRTA","type":"exact"},{"name":"RTA, classic type","type":"related"},{"name":"RTA, distal type, autosomal dominant","type":"related"},{"name":"RTA, gradient type","type":"related"},{"name":"autosomal dominant SLC4A1-associated distal renal tubular acidosis","type":"related"},{"name":"autosomal dominant distal renal tubular acidosis (disease)","type":"exact"},{"name":"distal renal tubular acidosis (disease), autosomal dominant","type":"exact"},{"name":"distal renal tubular acidosis 1","type":"exact"},{"name":"renal tubular acidosis 1","type":"related"},{"name":"renal tubular acidosis, distal, autosomal dominant","type":"related"}],"termid":"MONDO:0008368","terms_by_termid":{"MONDO:0008368":null},"xrefs":{"Monarch":{"xref_id":"0008368"}}}


id: MONDO:0012631
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An Alzheimer's disease that is characterized by an associated with variation in the region 1q25.","definition_xrefs":["PMID:17564960","DOID:0110047"],"direct_ancestors":[{"relation_name":"is_a","term_name":"early-onset autosomal dominant Alzheimer disease","termid":"MONDO:0015140"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002039","MONDO:0000426"],"is_obsolete":false,"name":"Alzheimer disease 14","secondary_identifiers":["MEDGEN:369666","MESH:C566999","UMLS:C1970144","OMIM:611154","GARD:16518"],"synonyms":[{"name":"AD14","type":"exact"},{"name":"Alzheimer disease 14","type":"exact"},{"name":"Alzheimer disease-14","type":"exact"},{"name":"Alzheimer's disease 14","type":"exact"},{"name":"Alzheimer's disease type 14","type":"exact"}],"termid":"MONDO:0012631","xrefs":{"Monarch":{"xref_id":"0012631"}}}


id: PATO:0000966
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000966 symmetry value (obsolete PATO:0000966)","termid":"PATO:0000966"}


id: PBO:0031161
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_threonine_import","termid":"PBO:0031161"}


id: GO:0051091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of molecular function","termid":"GO:0044093"},{"relation_name":"is_a","term_name":"regulation of DNA-binding transcription factor activity","termid":"GO:0051090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006351","GO:0006355","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of DNA-binding transcription factor activity","secondary_identifiers":["GO:1904169"],"synonyms":[{"name":"activation of transcription factor activity","type":"narrow"},{"name":"positive regulation of DNA binding transcription factor activity","type":"exact"},{"name":"positive regulation of sequence-specific DNA binding transcription factor activity","type":"exact"},{"name":"positive regulation of thyroid hormone receptor activity","type":"narrow"},{"name":"positive regulation of transcription factor activity","type":"broad"},{"name":"stimulation of transcription factor activity","type":"narrow"},{"name":"up regulation of transcription factor activity","type":"exact"},{"name":"up-regulation of transcription factor activity","type":"exact"},{"name":"upregulation of transcription factor activity","type":"exact"}],"termid":"GO:0051091"}


id: GO:0043493
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex of a large and small subunit which catalyze the packaging of DNA into viral heads. Note that not all viral terminases have this structure, some exist as single polypeptides.","definition_xrefs":["GOC:jl","PMID:18687036","GOC:mlg","GOC:bm","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"viral terminase complex","synonyms":[{"name":"phage terminase complex","type":"narrow"},{"name":"virus terminase complex","type":"exact"}],"termid":"GO:0043493"}


id: MONDO:0008315
data:
  {"annotated_genes":["SJAG_04885","SJAG_00997"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87112,87111],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013872"}]},"cv_name":"mondo","definition":"A primary or metastatic malignant tumor involving the prostate gland. The vast majority are carcinomas.","definition_xrefs":["NCIT:C7378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete genetic urogenital tumor (obsolete MONDO:0017130)","termid":"MONDO:0017130"},{"relation_name":"is_a","term_name":"male reproductive organ cancer","termid":"MONDO:0005836"},{"relation_name":"is_a","term_name":"prostate neoplasm","termid":"MONDO:0021259"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00997":null,"SJAG_04885":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"prostate cancer","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:399068003","DOID:10283","ICD9:185","MEDGEN:138169","MESH:D011471","UMLS:C0376358"],"synonyms":[{"name":"NGP - new growth of prostate","type":"exact"},{"name":"cancer of prostate gland","type":"exact"},{"name":"hereditary prostate cancer","type":"narrow"},{"name":"malignant neoplasm of prostate","type":"exact"},{"name":"malignant neoplasm of prostate gland","type":"exact"},{"name":"malignant neoplasm of the prostate","type":"exact"},{"name":"malignant prostate gland neoplasm","type":"exact"},{"name":"malignant prostate neoplasm","type":"exact"},{"name":"malignant prostate tumor","type":"exact"},{"name":"malignant prostate tumour","type":"exact"},{"name":"malignant tumor of prostate","type":"exact"},{"name":"malignant tumor of the prostate","type":"exact"},{"name":"malignant tumour of prostate","type":"exact"},{"name":"malignant tumour of the prostate","type":"exact"},{"name":"prostate cancer, familial","type":"narrow"},{"name":"prostate gland cancer","type":"exact"},{"name":"prostate neoplasm","type":"broad"},{"name":"prostatic cancer","type":"exact"},{"name":"prostatic neoplasm","type":"broad"},{"name":"tumor of the prostate","type":"broad"},{"name":"tumour of the prostate","type":"broad"}],"termid":"MONDO:0008315","terms_by_termid":{"MONDO:0013872":null},"xrefs":{"Monarch":{"xref_id":"0008315"}}}


id: MONDO:0018254
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"spondyloepimetaphyseal dysplasia","termid":"MONDO:0100510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondyloepimetaphyseal dysplasia, Isidor type","secondary_identifiers":["Orphanet:370015","GARD:21586","MEDGEN:1676518","UMLS:C5190629"],"termid":"MONDO:0018254","xrefs":{"Monarch":{"xref_id":"0018254"}}}


id: PBO:0072311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S25 pseudogene 8","termid":"PBO:0072311"}


id: PBO:0064259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain containing A7","termid":"PBO:0064259"}


id: MONDO:0005174
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute form of hypotension (disease).","definition_xrefs":["MONDO:patterns/acute"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypotensive disorder","termid":"MONDO:0005468"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute hypotension","secondary_identifiers":["UMLS:C0745176","EFO:0002497","MEDGEN:1843489"],"synonyms":[{"name":"acute hypotension (disease)","type":"exact"},{"name":"hypotension (disease), acute","type":"exact"}],"termid":"MONDO:0005174","xrefs":{"Monarch":{"xref_id":"0005174"}}}


id: PBO:0056610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malic enzyme 2 pseudogene 1","termid":"PBO:0056610"}


id: PBO:0063697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate kinase 1 pseudogene 1","termid":"PBO:0063697"}


id: MONDO:0012408
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any microphthalmia, isolated, with coloboma in which the cause of the disease is a mutation in the VSX2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microphthalmia, isolated, with coloboma","termid":"MONDO:0000170"},{"relation_name":"is_a","term_name":"isolated microphthalmia 2","termid":"MONDO:0012409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"microphthalmia, isolated, with coloboma 3","secondary_identifiers":["MEDGEN:400598","OMIM:610092","UMLS:C1864721","MESH:C566447","GARD:15471"],"synonyms":[{"name":"MCOPCB3","type":"related"},{"name":"VSX2 microphthalmia, isolated, with coloboma","type":"exact"},{"name":"microphthalmia with coloboma 3","type":"exact"},{"name":"microphthalmia, cataracts, and iris abnormalities","type":"related"},{"name":"microphthalmia, colobomatous, isolated 3","type":"related"},{"name":"microphthalmia, isolated, with coloboma 3","type":"exact"},{"name":"microphthalmia, isolated, with coloboma caused by mutation in VSX2","type":"exact"},{"name":"microphthalmia, isolated, with coloboma type 3","type":"exact"}],"termid":"MONDO:0012408","xrefs":{"Monarch":{"xref_id":"0012408"}}}


id: PBO:0056155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"macrophage enriched lincRNA repressor of IFN-gamma signaling","termid":"PBO:0056155"}


id: PBO:0042608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDRT15 pseudogene 8","termid":"PBO:0042608"}


id: PBO:0043607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic oncogenic antisense to MET transcript","termid":"PBO:0043607"}


id: MOD:01708
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with an isotope tagged reagent acyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-amino acylated residue","termid":"MOD:01696"},{"relation_name":"is_a","term_name":"isotope tagged reagent acylated residue","termid":"MOD:01705"},{"relation_name":"is_a","term_name":"isotope tagged reagent N-acylated residue","termid":"MOD:01706"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isotope tagged reagent alpha-amino acylated residue","termid":"MOD:01708"}


id: GO:0009660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an amyloplast. An amyloplast is a plastid whose main function is to synthesize and store starch.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid organization","termid":"GO:0009657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amyloplast organization","synonyms":[{"name":"amyloplast organisation","type":"exact"},{"name":"amyloplast organization and biogenesis","type":"related"}],"termid":"GO:0009660"}


id: MONDO:0043455
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypercalcemia generally develops as a late complication of malignancy; its appearance has grave prognostic significance. It remains unclear, however, whether death is associated with hypercalcemic crisis (uncontrolled or recurrent progressive hypercalcemia) or with advanced disease. Symptoms include central nervous system impairment such as delirium with prominent symptoms of personality change, cognitive dysfunction, disorientation, incoherent speech, and psychotic symptoms such as hallucinations and delusions, smooth muscle hypotonicity, and altered cardiovascular function.","definition_xrefs":["NCIT:C3496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypercalcemia disease","termid":"MONDO:0001566"},{"relation_name":"is_a","term_name":"paraneoplastic hematological syndrome","termid":"MONDO:0700253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005066"],"is_obsolete":false,"name":"humoral hypercalcemia of malignancy","secondary_identifiers":["UMLS:C0149911","SCTID:47709007","MEDGEN:56210","MESH:C562390"],"synonyms":[{"name":"hhm","type":"related"},{"name":"humoral hypercalcemia of malignancy","type":"exact"},{"name":"hypercalcemia of malignancy","type":"exact"},{"name":"mahc","type":"related"},{"name":"malignancy associated hypercalcemia","type":"related"},{"name":"malignant hypercalcemia","type":"related"}],"termid":"MONDO:0043455","xrefs":{"Monarch":{"xref_id":"0043455"}}}


id: PBO:0061596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurotensin receptor 2","termid":"PBO:0061596"}


id: PBO:0038501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 10","termid":"PBO:0038501"}


id: MOD:00169
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to N-cysteinyl-glycosylphosphatidylinositolethanolamine.","definition_xrefs":["PubMed:2897081","RESID:AA0160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylphosphatidylinositolated residue","termid":"MOD:00818"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"},{"rel_name":"is_a","termid":"MOD:00905"},{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:01155","MOD:00905","MOD:00764"],"is_obsolete":false,"name":"N-cysteinyl-glycosylphosphatidylinositolethanolamine","synonyms":[{"name":"GPICys","type":"exact"},{"name":"LIPID GPI-anchor amidated cysteine","type":"exact"},{"name":"N-cysteinyl-glycosylphosphatidylinositolethanolamine","type":"exact"}],"termid":"MOD:00169"}


id: PBO:0045940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ephrin A5","termid":"PBO:0045940"}


id: PBO:0065624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPN2 pseudogene 2","termid":"PBO:0065624"}


id: SO:0000501
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A type of non-canonical base-pairing.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"base_pair","termid":"SO:0000028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reverse_Hoogsteen_base_pair","synonyms":[{"name":"reverse Hoogsteen base pair","type":"exact"}],"termid":"SO:0000501"}


id: MONDO:0015558
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"indolent systemic mastocytosis","termid":"MONDO:0020331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"isolated bone marrow mastocytosis","secondary_identifiers":["UMLS:C4509020","GARD:20037","icd11.foundation:922733413","MEDGEN:1672479","NCIT:C198573","Orphanet:158778"],"termid":"MONDO:0015558","xrefs":{"Monarch":{"xref_id":"0015558"}}}


id: PATO:0000051
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical object quality","termid":"PATO:0001241"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"morphology","termid":"PATO:0000051"}


id: GO:0007208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phospholipase C-activating receptor G protein-coupled receptor signaling pathway initiated by serotonin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:dph","GOC:tb","GOC:mah","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:0007200"},{"relation_name":"is_a","term_name":"G protein-coupled serotonin receptor signaling pathway","termid":"GO:0098664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"phospholipase C-activating serotonin receptor signaling pathway","synonyms":[{"name":"activation of phospholipase C activity by serotonin receptor signaling pathway","type":"related"},{"name":"activation of phospholipase C activity by serotonin receptor signalling pathway","type":"related"},{"name":"serotonin receptor, phospholipase C activating pathway","type":"related"}],"termid":"GO:0007208"}


id: PBO:0036322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracellular 5'-nucleotidase, human NT5E family (predicted)","termid":"PBO:0036322"}


id: MONDO:0017386
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive malignant mesenchymal neoplasm with skeletal muscle differentiation, occurring in adults and rarely in children. The tumor is characterized by the presence of bizarre round, spindle, and polygonal cells. Clinical presentation includes a rapidly enlarging painful mass usually of the lower extremities.","definition_xrefs":["NCIT:C4258"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhabdomyosarcoma","termid":"MONDO:0005212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pleomorphic rhabdomyosarcoma","secondary_identifiers":["Orphanet:293199","DOID:3250","ICD9:171.9","ONCOTREE:PLRMS","UMLS:C0334480","MEDGEN:137770","GARD:21165","SCTID:404054005"],"synonyms":[{"name":"anaplastic rhabdomyosarcoma","type":"exact"},{"name":"pleomorphic rhabdomyosarcoma","type":"exact"},{"name":"pleomorphic rhabdomyosarcoma, adult type","type":"exact"}],"termid":"MONDO:0017386","xrefs":{"Monarch":{"xref_id":"0017386"}}}


id: PATO:0002180
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles.","definition_xrefs":["merriam-webster:merriam-webster"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"straight","termid":"PATO:0002180"}


id: PBO:0073615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIDT1 antisense RNA 1","termid":"PBO:0073615"}


id: GO:0004139
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde.","definition_xrefs":["RHEA:12821","EC:4.1.2.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"deoxyribose-phosphate aldolase activity","secondary_identifiers":["KEGG_REACTION:R01066","Reactome:R-HSA-6787321","MetaCyc:DEOXYRIBOSE-P-ALD-RXN"],"synonyms":[{"name":"2-deoxy-D-ribose-5-phosphate acetaldehyde-lyase (D-glyceraldehyde-3-phosphate-forming)","type":"related"},{"name":"2-deoxy-D-ribose-5-phosphate acetaldehyde-lyase activity","type":"related"},{"name":"2-deoxyribose-5-phosphate aldolase activity","type":"related"},{"name":"deoxyriboaldolase activity","type":"related"},{"name":"deoxyribose-5-phosphate aldolase activity","type":"related"},{"name":"phosphodeoxyriboaldolase activity","type":"related"}],"termid":"GO:0004139"}


id: PBO:0047945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, distamycin A type, rare, fra(16)(q22.1)","termid":"PBO:0047945"}


id: PR:Q09767
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ADP-ribosylation factor-like protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00273","PANTHER:PTHR11711:SF26","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP-ribosylation factor-like protein alp41 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F3.05c","secondary_identifiers":["UniProtKB:Q09767"],"synonyms":[{"name":"Spom972h-ARL2","type":"exact"},{"name":"altered polarity protein 41 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09767"}


id: PBO:0000706
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.7.19","termid":"PBO:0000706"}


id: GO:0002581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of antigen (peptide or polysaccharide) via MHC class II.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antigen processing and presentation","termid":"GO:0002578"},{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","termid":"GO:0002580"},{"relation_name":"negatively_regulates","term_name":"antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","termid":"GO:0002504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","synonyms":[{"name":"down regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","type":"exact"},{"name":"down-regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","type":"exact"},{"name":"downregulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","type":"exact"},{"name":"inhibition of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","type":"narrow"},{"name":"negative regulation of peptide or polysaccharide antigen processing and presentation via MHC class II","type":"exact"}],"termid":"GO:0002581"}


id: GO:0140962
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of a chemical within extracellular body fluids, such as blood, xylem or phloem, of a multicellular organism. This is distinct from maintenance of cellular homeostasis, which occurs within a cell.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal-level homeostasis","termid":"GO:0048871"},{"relation_name":"is_a","term_name":"chemical homeostasis","termid":"GO:0048878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multicellular organismal-level chemical homeostasis","synonyms":[{"name":"multicellular organism level chemical homeostasis","type":"exact"},{"name":"organismal level chemical homeostasis","type":"exact"}],"termid":"GO:0140962"}


id: MONDO:0001476
data:
  {"annotated_genes":["SJAG_03497"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013783"}]},"cv_name":"mondo","definition":"An abnormality in which a part of a structure in one or both eyes is missing.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete non-syndromic developmental defect of the eye (obsolete MONDO:0015217)","termid":"MONDO:0015217"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03497":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"coloboma","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1046","UMLS:C0009363","NCIT:C98877","ICD9:743.49","SCTID:93390002","Orphanet:194","MESH:D003103","DOID:12270"],"synonyms":[{"name":"coloboma of eye","type":"exact"},{"name":"coloboma of macula","type":"narrow"},{"name":"coloboma of the eye","type":"exact"},{"name":"congenital ocular coloboma","type":"narrow"},{"name":"ocular coloboma","type":"exact"}],"termid":"MONDO:0001476","terms_by_termid":{"MONDO:0013783":null},"xrefs":{"Monarch":{"xref_id":"0001476"}}}


id: GO:0000779
data:
  {"annotated_genes":["SJAG_03916","SJAG_01546","SJAG_04623","SJAG_00350","SJAG_04581","SJAG_01775","SJAG_05321","SJAG_02346","SJAG_05220","SJAG_01836","SJAG_05266","SJAG_01837","SJAG_02336","SJAG_02624","SJAG_02651","SJAG_03217","SJAG_01805","SJAG_02807","SJAG_04841","SJAG_03926","SJAG_04412","SJAG_00646","SJAG_01371","SJAG_03048","SJAG_00594","SJAG_03418","SJAG_02513","SJAG_01297","SJAG_03437","SJAG_04126","SJAG_03619","SJAG_04745","SJAG_01613","SJAG_00697","SJAG_01211","SJAG_04255","SJAG_01067","SJAG_03832","SJAG_00307","SJAG_00918","SJAG_00418","SJAG_00794","SJAG_04076","SJAG_03540","SJAG_00082","SJAG_05019","SJAG_04038","SJAG_02731","SJAG_01224","SJAG_00207","SJAG_03161","SJAG_01330","SJAG_03683","SJAG_04259","SJAG_02761","SJAG_05319","SJAG_03681","SJAG_01278","SJAG_00684","SJAG_01831","SJAG_00666","SJAG_04699","SJAG_02451","SJAG_01228","SJAG_04884","SJAG_01928","SJAG_03220","SJAG_03989","SJAG_05273","SJAG_02814","SJAG_03867","SJAG_03327","SJAG_01601","SJAG_04696","SJAG_01082","SJAG_04177","SJAG_02664","SJAG_04040"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87595,89853,90708,91058,98913,101862,107529,107574,107610,116650],"is_not":false,"summary":null,"term":"GO:0000779"},{"annotations":[116708,62331,100317,74770,76277,60373,63478,79458,63533,68061],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0042729"},{"annotations":[99067,115688,116451,113011,111972,114281,110103],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000939"},{"annotations":[96557,103677,118645,79297,97068,113172,114871,76006,89772,94554,108040,111681,106111,90570,72655,99933,89143,102141,104335,70246,104661,111837,119007,109004,79672,99011,119227,75082,73119,105274],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000776"},{"annotations":[113567,101131],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0180019"},{"annotations":[74184,60271,79614,69658],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000444"},{"annotations":[105346,106160,94094,89827,61694,97700,113340,112902,94488,113923,89473],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031511"},{"annotations":[68814,111473],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0033551"},{"annotations":[75611,75574,74578,76943],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031262"},{"annotations":[114286,118451,100176],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000940"}]},"cv_name":"cellular_component","definition":"The region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. 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id: PBO:0031788
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_fusion_during_conjugation","termid":"PBO:0031788"}


id: PBO:0067395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 500, pseudogene","termid":"PBO:0067395"}


id: GO:0048487
data:
  {"annotated_genes":["SJAG_04074","SJAG_02270"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66990,76561],"is_not":false,"summary":null,"term":"GO:0048487"}]},"cv_name":"molecular_function","definition":"Binding to the microtubule constituent protein beta-tubulin.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tubulin binding","termid":"GO:0015631"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02270":null,"SJAG_04074":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488","GO:0008092"],"is_obsolete":false,"name":"beta-tubulin binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"synonyms":[{"name":"beta tubulin binding","type":"exact"}],"termid":"GO:0048487","terms_by_termid":{"GO:0048487":null}}


id: PBO:0052560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kynurenine 3-monooxygenase","termid":"PBO:0052560"}


id: PBO:0061014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nidogen 2","termid":"PBO:0061014"}


id: PR:Q9URV9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A sulfiredoxin-1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02428","PRO:DNx","PANTHER:PTHR21348:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfiredoxin (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC106.02c","secondary_identifiers":["UniProtKB:Q9URV9"],"synonyms":[{"name":"Spom972h-SRXN1","type":"exact"}],"termid":"PR:Q9URV9"}


id: MONDO:0015377
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cysts and fistulae of the face and oral cavity","termid":"MONDO:0015476"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"third branchial cleft anomaly","secondary_identifiers":["UMLS:C3874314","MEDGEN:850398","GARD:19935","Orphanet:141030","SCTID:73391000119102"],"synonyms":[{"name":"third branchial cleft cyst","type":"exact"},{"name":"third branchial cleft fistula","type":"exact"}],"termid":"MONDO:0015377","xrefs":{"Monarch":{"xref_id":"0015377"}}}


id: PBO:0077055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thrombospondin type 1 domain containing 1","termid":"PBO:0077055"}


id: PBO:0017620
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Progressive Myoclonus Epilepsy","termid":"PBO:0017620"}


id: MONDO:0001440
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"keratoconjunctivitis","termid":"MONDO:0004768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"neurotrophic keratoconjunctivitis","secondary_identifiers":["MEDGEN:509777","SCTID:77080005","ICD9:370.35","UMLS:C0155084","DOID:12125"],"termid":"MONDO:0001440","xrefs":{"Monarch":{"xref_id":"0001440"}}}


id: PBO:0089169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase P and RNase MRP subunit Pop4","termid":"PBO:0089169"}


id: PBO:0053179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEM domain nuclear envelope protein 2","termid":"PBO:0053179"}


id: MONDO:0011908
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A myelodysplastic/myeloproliferative neoplasm of childhood that is characterized by proliferation principally of the granulocytic and monocytic lineages. Myelomonocytic proliferation is seen in the bone marrow and the blood. The leukemic cells may infiltrate any tissue, however liver, spleen, lymph nodes, skin, and respiratory tract are the most common sites of involvement. (WHO, 2001)","definition_xrefs":["NCIT:C9233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic myelomonocytic leukemia","termid":"MONDO:0020311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"juvenile myelomonocytic leukemia","secondary_identifiers":["DOID:0050458","EFO:1000309","ICDO:9946/3","MedDRA:10023249","ONCOTREE:JMML","MESH:D054429","Orphanet:86834","NANDO:2200014","MEDGEN:138109","icd11.foundation:1786015803","NANDO:2200015","NORD:1316","UMLS:C0349639","GARD:9884","OMIM:607785","SCTID:445227008"],"synonyms":[{"name":"JCML","type":"exact"},{"name":"JMML","type":"exact"},{"name":"chronic myelomonocytic leukaemia","type":"broad"},{"name":"chronic myelomonocytic leukemia","type":"broad"},{"name":"juvenile chronic myelogenous leukaemia","type":"exact"},{"name":"juvenile chronic myelogenous leukemia","type":"exact"},{"name":"juvenile chronic myeloid leukaemia","type":"exact"},{"name":"juvenile chronic myeloid leukemia","type":"exact"},{"name":"juvenile chronic myelomonocytic leukaemia","type":"exact"},{"name":"juvenile chronic myelomonocytic leukemia","type":"exact"},{"name":"juvenile myelomonocytic leukemia","type":"exact"},{"name":"juvenile myelomonocytic leukemia, autosomal dominant, somatic mutation","type":"exact"},{"name":"leukemia, chronic myelomonocytic","type":"related"},{"name":"leukemia, juvenile myelomonocytic","type":"related"},{"name":"leukemia, juvenile myelomonocytic, autosomal dominant, somatic mutation","type":"exact"},{"name":"leukemia, juvenile myelomonocytic, somatic","type":"exact"}],"termid":"MONDO:0011908","xrefs":{"Monarch":{"xref_id":"0011908"}}}


id: GO:0001702
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A gastrulation process in which the initial invagination becomes the anus and the mouth forms second.","definition_xrefs":["GOC:go_curators","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastrulation","termid":"GO:0007369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gastrulation with mouth forming second","secondary_identifiers":["GO:0010003","GO:0048276"],"synonyms":[{"name":"deuterostomic gastrulation","type":"exact"}],"termid":"GO:0001702"}


id: SO:0000529
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one D-gene, one DJ-gene, one J-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"D_gene_segment","termid":"SO:0000458"},{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"J_gene_segment","termid":"SO:0000470"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"DJ_gene_segment","termid":"SO:0000572"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_D_DJ_J_C_cluster","synonyms":[{"name":"V D DJ J C cluster","type":"exact"},{"name":"V-D-(DJ)-J-C-CLUSTER","type":"exact"}],"termid":"SO:0000529"}


id: PBO:0044142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTBP2 pseudogene 8","termid":"PBO:0044142"}


id: PR:P78963
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein arginine N-methyltransferase 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10738:SF0","PRO:DNx","OMA:SCHPO03206"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein arginine N-methyltransferase skb1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16H5.11c","secondary_identifiers":["UniProtKB:P78963"],"synonyms":[{"name":"Spom972h-PRMT5","type":"exact"},{"name":"shk1 kinase-binding protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"type II PRMT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"type II protein arginine N-methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78963"}


id: GO:0021841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The creation and reception of signals that result in the movement of interneurons toward the signal, where this process is involved in migration from the subpallium to the cortex.","definition_xrefs":["GOC:dph","GOC:dgh","GO_REF:0000021","GOC:cls","PMID:12626695","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive chemotaxis","termid":"GO:0050918"},{"relation_name":"part_of","term_name":"directional guidance of interneurons involved in migration from the subpallium to the cortex","termid":"GO:0021840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chemoattraction involved in interneuron migration from the subpallium to the cortex","synonyms":[{"name":"positive chemotaxis involved in interneuron migration from the subpallium to the cortex","type":"exact"}],"termid":"GO:0021841"}


id: PBO:0004718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit Srb7","termid":"PBO:0004718"}


id: MONDO:0005569
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Softening and degeneration of the CARTILAGE. Pathological processes involving the chondral tissue (CARTILAGE).","definition_xrefs":["EFO:0005802"],"gene_count":0,"genotype_count":0,"name":"obsolete cartilage disease (obsolete MONDO:0005569)","secondary_identifiers":["MESH:D002357","SCTID:50927007","ICD9:733.99","DOID:1222"],"synonyms":[{"name":"cartilage disorder","type":"exact"},{"name":"cartilage tissue disease","type":"exact"},{"name":"cartilage tissue disease or disorder","type":"exact"},{"name":"chondropathy","type":"exact"},{"name":"disease of cartilage tissue","type":"exact"},{"name":"disease or disorder of cartilage tissue","type":"exact"},{"name":"disorder of cartilage tissue","type":"exact"}],"termid":"MONDO:0005569","xrefs":{"Monarch":{"xref_id":"0005569"}}}


id: GO:0034628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide (NAD), beginning with the catabolism of L-aspartate into the precursor quinolinate; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aspartate metabolic process","termid":"GO:0006531"},{"relation_name":"is_a","term_name":"'de novo' NAD biosynthetic process","termid":"GO:0034627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086","GO:0006520"],"is_obsolete":false,"name":"'de novo' NAD biosynthetic process from L-aspartate","secondary_identifiers":["GO:0019355"],"synonyms":[{"name":"'de novo' NAD biosynthetic process from aspartate","type":"broad"},{"name":"de novo NAD biosynthetic process from aspartate","type":"related"},{"name":"nicotinamide nucleotide anabolism from aspartate","type":"exact"},{"name":"nicotinamide nucleotide biosynthetic process from aspartate","type":"exact"},{"name":"nicotinamide nucleotide formation from aspartate","type":"exact"},{"name":"nicotinamide nucleotide synthesis from aspartate","type":"exact"}],"termid":"GO:0034628"}


id: PBO:0089837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L25","termid":"PBO:0089837"}


id: MONDO:0008826
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Arthrogryposis-hyperkeratosis syndrome, lethal form is an arthrogryposis syndrome, described in two siblings to date, characterized by the association of multiple congenital joint contractures (of the large joints, fingers and toes) and hyperkeratosis (i.e. thick, scaling and fissured skin), with death occurring in early infancy. There have been no further reports in the literature since 1993.","definition_xrefs":["Orphanet:1485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arthrogryposis multiplex congenita","termid":"MONDO:0015168"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis-hyperkeratosis syndrome, lethal form","secondary_identifiers":["SCTID:726620005","GARD:3053","MESH:C535883","UMLS:C1859710","MEDGEN:349230","OMIM:208158"],"synonyms":[{"name":"Johnston Aarons Schelley syndrome","type":"related"},{"name":"Johnston-Aarons-Schelley syndrome","type":"exact"},{"name":"Joint contractures, hyperkeratosis, and severe hypoplasia of the posterior columns","type":"related"},{"name":"arthrogryposis with hyperkeratosis","type":"related"}],"termid":"MONDO:0008826","xrefs":{"Monarch":{"xref_id":"0008826"}}}


id: MONDO:0000427
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive disease (obsolete MONDO:0000427)","termid":"MONDO:0000427","xrefs":{"Monarch":{"xref_id":"0000427"}}}


id: MONDO:0045023
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of adrenogenital syndrome that is acquired during the lifetime of the individual.","definition_xrefs":["MONDO:patterns/acquired"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acquired metabolic disease","termid":"MONDO:0006504"},{"relation_name":"is_a","term_name":"adrenogenital syndrome","termid":"MONDO:0015898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"acquired adrenogenital syndrome","secondary_identifiers":["icd11.foundation:1228689964","SCTID:190512008","MEDGEN:536747","UMLS:C0237971"],"synonyms":[{"name":"acquired adrenogenital syndrome","type":"exact"}],"termid":"MONDO:0045023","xrefs":{"Monarch":{"xref_id":"0045023"}}}


id: GO:0031088
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding the platelet dense granule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule membrane","termid":"GO:0030667"},{"relation_name":"part_of","term_name":"platelet dense granule","termid":"GO:0042827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"platelet dense granule membrane","termid":"GO:0031088"}


id: FYPO:0002586
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial tRNA 3'-end processing is normal (i.e. indistinguishable from wild type). In mitochondrial tRNA 3'-end processing, the 3' end of a mitochondrial pre-tRNA molecule is converted to that of a mature mitochondrial tRNA.","definition_xrefs":["GO:0006396","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA processing","termid":"FYPO:0001980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal mitochondrial tRNA 3'-end processing","synonyms":[{"name":"normal mitochondrial tRNA 3'-end processing during mitotic cell cycle","type":"related"},{"name":"normal mitochondrial tRNA 3'-end processing during vegetative growth","type":"exact"},{"name":"normal mitochondrial transfer RNA 3'-end processing","type":"exact"}],"termid":"FYPO:0002586"}


id: PBO:0028886
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RNA_splicing","termid":"PBO:0028886"}


id: MONDO:0013279
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any long QT syndrome in which the cause of the disease is a mutation in the KCNJ5 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"long QT syndrome","termid":"MONDO:0002442"},{"relation_name":"is_a","term_name":"familial long QT syndrome","termid":"MONDO:0019171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"long QT syndrome 13","secondary_identifiers":["GARD:15666","OMIM:613485","UMLS:C3150733","DOID:0110654","MEDGEN:462083"],"synonyms":[{"name":"KCNJ5 long QT syndrome","type":"exact"},{"name":"LQT13","type":"exact"},{"name":"long QT syndrome 13","type":"exact"},{"name":"long QT syndrome caused by mutation in KCNJ5","type":"exact"},{"name":"long QT syndrome type 13","type":"exact"}],"termid":"MONDO:0013279","xrefs":{"Monarch":{"xref_id":"0013279"}}}


id: PBO:0043755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX7C pseudogene 3","termid":"PBO:0043755"}


id: GO:0008915
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate + UDP-2,3-bis(3-hydroxytetradecanoyl)-D-glucosamine = 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-(1->6)-beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate + H+ + UDP.","definition_xrefs":["EC:2.4.1.182","RHEA:22668"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glycosyltransferase activity","termid":"GO:0008194"},{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"lipid-A-disaccharide synthase activity","secondary_identifiers":["MetaCyc:LIPIDADISACCHARIDESYNTH-RXN","KEGG_REACTION:R04606"],"synonyms":[{"name":"UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine:2,3-bis-(3-hydroxytetradecanoyl)-beta-D-glucosaminyl-1-phosphate 2,3-bis(3-hydroxytetradecanoyl)-glucosaminyltransferase activity","type":"related"}],"termid":"GO:0008915"}


id: GO:0071920
data:
  {"annotated_genes":["SJAG_02720","SJAG_04768","SJAG_02037","SJAG_03745","SJAG_04601"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87275,92028,97931,104085,111086],"is_not":false,"summary":null,"term":"GO:0071920"}]},"cv_name":"cellular_component","definition":"A nuclear body that contains proteins involved in pre-mRNA 3'-end cleavage and polyadenylation, such as DDX1, CSTF2 and CPSFs, as well as the transcription factors TFIIE and TFIIF. Cleavage bodies are localized adjacent to Cajal bodies and are involved in mRNA3'-end processing.","definition_xrefs":["PMID:8654386","PMID:11598190","PMID:10564273"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear body","termid":"GO:0016604"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02037":null,"SJAG_02720":null,"SJAG_03745":null,"SJAG_04601":null,"SJAG_04768":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0005654"],"is_obsolete":false,"name":"cleavage body","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071920","terms_by_termid":{"GO:0071920":null}}


id: MONDO:0100472
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lissencephaly spectrum disorder that manifests as posterior predominant pachygyria (ranging from mild severity to classic lissencephaly) and brainstem malformations which include brainstem dysplasia (typically with reduced anteroposterior thickness and transverse broadening of the pons/medulla) and midline crossing defects (anterior commissure, transverse pontine fibers, pyramidal tract, callosum hypoplasia).","direct_ancestors":[{"relation_name":"is_a","term_name":"lissencephaly spectrum disorders","termid":"MONDO:0018838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"lissencephaly spectrum disorder with complex brainstem malformation","termid":"MONDO:0100472","xrefs":{"Monarch":{"xref_id":"0100472"}}}


id: GO:0009904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The relocation process in which chloroplasts in photosynthetic cells move toward a brighter area in a cell to optimize photosynthesis.","definition_xrefs":["GOC:tb","PMID:11978863"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloroplast relocation","termid":"GO:0009902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"chloroplast accumulation movement","synonyms":[{"name":"low-fluence-rate response","type":"related"}],"termid":"GO:0009904"}


id: MONDO:0100407
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute myeloid leukemia that has the chromosomal anomaly t(11;15)(p15;q35). (A cytogenetic abnormality that refers to the translocation of chromosome 11p15 with chromosome 15q35. It results in the formation of NUP98/JARID1A fusion gene. It is associated with the development of acute myeloid leukemia with t(11;15)(p15;q35); NUP98-JARID1A.)","definition_xrefs":["NCIT:C131505"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004992","MONDO:0005046"],"is_obsolete":false,"name":"acute myeloid leukemia, t(11;15)(p15;q35)","secondary_identifiers":["NCIT:C131504"],"synonyms":[{"name":"AML, t(11;15)(p15;q35)","type":"exact"}],"termid":"MONDO:0100407","xrefs":{"Monarch":{"xref_id":"0100407"}}}


id: PBO:0060446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADK2 antisense RNA 1","termid":"PBO:0060446"}


id: PBO:0081469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF341 antisense RNA 1","termid":"PBO:0081469"}


id: PBO:0029873
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H4_acetylation","termid":"PBO:0029873"}


id: PBO:0070322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 11","termid":"PBO:0070322"}


id: PR:Q9USX8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lea1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USX8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 small nuclear ribonucleoprotein A' (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1861.08c","synonyms":[{"name":"Spom972h-lea1","type":"exact"},{"name":"U2 snRNP A' (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USX8"}


id: MONDO:0800458
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A heart disease that is present at birth. Representative examples include atrial, ventricular, and atrioventricular septal defects, double-outlet right ventricle, tetralogy of Fallot, hypoplastic left heart syndrome, aortic stenosis, and coarctation of the aorta.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome","termid":"MONDO:0019042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NR2F2 related multiple congenital anomalies/dysmorphic syndrome","synonyms":[{"name":"ARP1-related multiple congenital anomalies/dysmorphic syndrome","type":"exact"},{"name":"COUPTFII-related multiple congenital anomalies/dysmorphic syndrome","type":"exact"},{"name":"NR2F2 related multiple congenital anomalies/dysmorphic syndrome","type":"exact"},{"name":"TCOUP2-related multiple congenital anomalies/dysmorphic syndrome","type":"exact"}],"termid":"MONDO:0800458","xrefs":{"Monarch":{"xref_id":"0800458"}}}


id: PBO:0002730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaredoxin Grx1","termid":"PBO:0002730"}


id: PR:Q10368
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC22E12.18 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C22E12.18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.18","synonyms":[{"name":"Spom972h-SPAC22E12.18","type":"exact"}],"termid":"PR:Q10368"}


id: PR:Q9URT2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tho1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9URT2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein P25A2.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCP25A2.03","synonyms":[{"name":"Spom972h-tho1","type":"exact"}],"termid":"PR:Q9URT2"}


id: GO:0032395
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an MHC class II protein complex and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["ISBN:0781735149","GOC:signaling","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"},{"relation_name":"is_a","term_name":"immune receptor activity","termid":"GO:0140375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"MHC class II receptor activity","synonyms":[{"name":"T cell receptor activity","type":"related"},{"name":"alpha-beta T cell receptor activity","type":"related"},{"name":"gamma-delta T cell receptor activity","type":"related"}],"termid":"GO:0032395"}


id: GO:1905795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a puromycin stimulus.","definition_xrefs":["GO_REF:0000071","PMID:25736288","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"},{"relation_name":"is_a","term_name":"response to puromycin","termid":"GO:1905794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to puromycin","synonyms":[{"name":"cellular response to 3'-deoxy-N,N-dimethyl-3'-(O-methyl-L-tyrosinamido)adenosine","type":"exact"}],"termid":"GO:1905795"}


id: PBO:0046011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 1 pseudogene 6","termid":"PBO:0046011"}


id: PBO:0076687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor A like 4 pseudogene 1","termid":"PBO:0076687"}


id: PBO:0005188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"switch-activating protein Sap1","termid":"PBO:0005188"}


id: PBO:0062437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 101 pseudogene","termid":"PBO:0062437"}


id: MONDO:0008823
data:
  {"annotated_genes":["SJAG_05194"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008822"}]},"cv_name":"mondo","definition":"Neurogenic arthrogryposis multiplex congenita is a form of arthrogryposis multiplex congenita characterized by congenital immobility of the limbs with fixation of multiple joints and muscle wasting. This condition is secondary to neurogenic muscular atrophy.","definition_xrefs":["Orphanet:1143"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arthrogryposis multiplex congenita","termid":"MONDO:0015168"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05194":null},"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis multiplex congenita 2, neurogenic type","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5435650","SCTID:715316005","GARD:790","MESH:C536614","OMIM:208100","MEDGEN:1725686","DOID:0090124"],"synonyms":[{"name":"AMC neurogenic type","type":"exact"},{"name":"AMC, neurogenic type","type":"related"},{"name":"AMCN","type":"exact"},{"name":"arthrogryposis multiplex congenita neurogenic type","type":"exact"},{"name":"arthrogryposis multiplex congenita, neurogenic type","type":"related"},{"name":"neurogenic arthrogryposis multiplex congenita","type":"exact"},{"name":"neurogenic type of AMC","type":"related"}],"termid":"MONDO:0008823","terms_by_termid":{"MONDO:0008822":null},"xrefs":{"Monarch":{"xref_id":"0008823"}}}


id: GO:0099012
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a neuronal dense core vesicle.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dense core granule membrane","termid":"GO:0032127"},{"relation_name":"part_of","term_name":"neuronal dense core vesicle","termid":"GO:0098992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"neuronal dense core vesicle membrane","termid":"GO:0099012"}


id: GO:0080043
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a glucosyl group from UDP-glucose to the 3-hydroxy group of a quercetin molecule.","definition_xrefs":["PMID:15352060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"quercetin 3-O-glucosyltransferase activity","termid":"GO:0080043"}


id: PR:O94343
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1271.10c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized MFS-type transporter C1271.10c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1271.10c","synonyms":[{"name":"Spom972h-SPBC1271.10c","type":"exact"}],"termid":"PR:O94343"}


id: PBO:0070397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RORB antisense RNA 1","termid":"PBO:0070397"}


id: PBO:0057719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1302-4","termid":"PBO:0057719"}


id: GO:0080006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determines the spacing between two shoot nodes. A shoot node is the region of the shoot where the spikelet, flower, floret, branch, bud and/or leaves are attached.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification process","termid":"GO:0007389"},{"relation_name":"part_of","term_name":"shoot system development","termid":"GO:0048367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"internode patterning","termid":"GO:0080006"}


id: FYPO:0007347
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 36 of histone H3 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K36 methylation during vegetative growth","termid":"FYPO:0002920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal histone H3-K36 trimethylation during vegetative growth","synonyms":[{"name":"normal histone H3 K36 trimethylation during vegetative growth","type":"exact"},{"name":"normal histone H3-K36 trimethylation during mitotic cell cycle","type":"related"},{"name":"normal histone H3K36me3 during vegetative growth","type":"exact"},{"name":"normal histone lysine H3 K36 trimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0007347"}


id: GO:0004871
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transducer activity (obsolete GO:0004871)","synonyms":[{"name":"hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity","type":"narrow"},{"name":"quorum sensing response regulator activity","type":"narrow"},{"name":"quorum sensing signal generator activity","type":"narrow"}],"termid":"GO:0004871"}


id: FYPO:0002052
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the frequency of occurrence of ascospore formation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000257"],"is_obsolete":false,"name":"normal sporulation frequency","synonyms":[{"name":"normal ascospore formation frequency","type":"exact"},{"name":"normal sporulation occurrence","type":"exact"}],"termid":"FYPO:0002052"}


id: PBO:0091018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab family GTPase Ryh1","termid":"PBO:0091018"}


id: PBO:0046496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERGIC and golgi 3","termid":"PBO:0046496"}


id: PBO:0026732
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_kinetochore_during_mitotic_metaphase","termid":"PBO:0026732"}


id: MONDO:0035448
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A group of rare central nervous system malformations characterized by varying degrees of absence or dysplasia of the derivatives of the prosencephalon (i. e. telencephalon and diencephalon), with an intact cranial vault. The spectrum comprises atelencephaly, the less severe form, in which only the telencephalon is affected, and aprosencephaly, where the diencephalon is also involved. The malformations may occur in an isolated form or in association with other anomalies. [Orphanet:566847]","definition_xrefs":["Orphanet:566847"],"gene_count":0,"genotype_count":0,"name":"obsolete aprosencephaly/atelencephaly spectrum (obsolete MONDO:0035448)","termid":"MONDO:0035448","xrefs":{"Monarch":{"xref_id":"0035448"}}}


id: GO:0055039
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A crystalline exocytotic organelle composed of small, acidic proteins existing primarily as disulphide-linked dimers. The trichocyst is an organelle that releases long filamentous proteins that capture predators in net-like structures, to slow them down when the cell is disturbed. The protein is nontoxic and shaped like a long, striated, fibrous shaft.","definition_xrefs":["PMID:3667715","GOC:jid","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular membraneless organelle","termid":"GO:0043264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005576"],"is_obsolete":false,"name":"trichocyst","secondary_identifiers":["Wikipedia:Trichocyst"],"termid":"GO:0055039"}


id: PBO:0055600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3036","termid":"PBO:0055600"}


id: PBO:0064723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 59","termid":"PBO:0064723"}


id: PBO:0048986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GC-rich promoter binding protein 1","termid":"PBO:0048986"}


id: SO:0000323
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The first base to be translated into protein.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CDS_region","termid":"SO:0000851"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coding_start","synonyms":[{"name":"coding start","type":"exact"},{"name":"translation initiation site","type":"exact"},{"name":"translation start","type":"related"}],"termid":"SO:0000323"}


id: PBO:0085859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YLR108C is not an esssential gene; protein abundance increases in response to DNA replication stress; YLR108C has a paralog, YDR132C, that arose from the whole genome duplication","termid":"PBO:0085859"}


id: PBO:0052325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA1549","termid":"PBO:0052325"}


id: MONDO:0017655
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete progressive epilepsy and/or ataxia with myoclonus as a major feature (obsolete MONDO:0017655)","secondary_identifiers":["Orphanet:306762"],"termid":"MONDO:0017655","xrefs":{"Monarch":{"xref_id":"0017655"}}}


id: PBO:0077218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation machinery associated 16 homolog pseudogene 1","termid":"PBO:0077218"}


id: PR:Q9C0X1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC18E5.14c gene.","definition_xrefs":["UniProtKB:Q9C0X1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C18E5.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18E5.14c","synonyms":[{"name":"Spom972h-SPBC18E5.14c","type":"exact"}],"termid":"PR:Q9C0X1"}


id: MONDO:0015350
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"17q11.2 microduplication syndrome is characterized by dysmorphic features and intellectual deficit.","definition_xrefs":["Orphanet:139474"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"partial duplication of the long arm of chromosome 17","termid":"MONDO:0016967"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"17q11.2 microduplication syndrome","secondary_identifiers":["OMIM:618874","GARD:16952","MEDGEN:501218","UMLS:C3495679","SCTID:719583002"],"synonyms":[{"name":"Grisart-Destree syndrome","type":"exact"},{"name":"Grisart-Destrée syndrome","type":"exact"},{"name":"Nf1 Microduplication Syndrome","type":"exact"},{"name":"chromosome 17q11.2 duplication syndrome, 1.4-mb","type":"exact"},{"name":"dup(17)(q11.2)","type":"exact"},{"name":"trisomy 17q11.2","type":"exact"}],"termid":"MONDO:0015350","xrefs":{"Monarch":{"xref_id":"0015350"}}}


id: MONDO:0011113
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Charcot-Marie-Tooth disease type 4C (CMT4C) is a subtype of Charcot-Marie-Tooth type 4 characterized by childhood or adolescent-onset of a relatively mild, demyelinating sensorimotor neuropathy that contrasts with a severe, rapidly progressing, early-onset scoliosis, and the typical CMT phenotype (i.e. distal muscle weakness and atrophy, sensory loss, and often foot deformity). A wide spectrum of nerve conduction velocities are observed and cranial nerve involvement and kyphoscoliosis have also been reported.","definition_xrefs":["Orphanet:99949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 4","termid":"MONDO:0018995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease type 4C","secondary_identifiers":["icd11.foundation:382219984","UMLS:C1866636","OMIM:601596","SCTID:715797002","MEDGEN:356581","MESH:C535423","NCIT:C129864","GARD:9201","DOID:0110183"],"synonyms":[{"name":"CMT 4C","type":"related"},{"name":"CMT4C","type":"exact"},{"name":"Charcot Marie Tooth disease type 4C","type":"related"},{"name":"Charcot-Marie-Tooth disease type 4 caused by mutation in SH3TC2","type":"exact"},{"name":"Charcot-Marie-Tooth disease type 4C","type":"exact"},{"name":"Charcot-Marie-Tooth disease, demyelinating, autosomal recessive, type 4C","type":"related"},{"name":"Charcot-Marie-Tooth disease, type 4C","type":"related"},{"name":"Charcot-Marie-Tooth neuropathy type 4C","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, type 4C","type":"related"},{"name":"SH3TC2 Charcot-Marie-Tooth disease type 4","type":"exact"},{"name":"autosomal recessive demyelinating Charcot-Marie-Tooth disease type 4C","type":"exact"}],"termid":"MONDO:0011113","xrefs":{"Monarch":{"xref_id":"0011113"}}}


id: GO:1990383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of biotin.","definition_xrefs":["PMID:12557275"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to starvation","termid":"GO:0009267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to biotin starvation","termid":"GO:1990383"}


id: PBO:0003521
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. Pombe YPD1-like protein","termid":"PBO:0003521"}


id: FYPO:0003574
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 in centromere outer repeat regions is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K14 acetylation during vegetative growth","termid":"FYPO:0003224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal histone H3-K14 acetylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"normal histone H3-K14 acetylation at centromere otr during vegetative growth","type":"exact"},{"name":"normal histone H3-K14 acetylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"normal histone H3-K14 acetylation at centromeric outer repeat region during vegetative growth","type":"exact"},{"name":"normal histone H3-K14 acetylation at pericentric region during vegetative growth","type":"related"},{"name":"normal histone H3-K14 acetylation at pericentromeric region during vegetative growth","type":"related"},{"name":"normal histone H3K14 acetylation at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0003574"}


id: PR:Q09823
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rec10 gene.","definition_xrefs":["UniProtKB:Q09823","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic recombination protein rec10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25G10.04c","synonyms":[{"name":"Spom972h-rec10","type":"exact"}],"termid":"PR:Q09823"}


id: PBO:0087368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sporulation-specific protein with a leucine zipper motif; subunit of the MIS complex which controls mRNA methylation during during the induction of sporulation","termid":"PBO:0087368"}


id: PBO:0066397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regenerating family member 1 alpha","termid":"PBO:0066397"}


id: PBO:0028436
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_myriocin_during_vegetative_growth","termid":"PBO:0028436"}


id: GO:1990593
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to nascent polypeptide-associated complex, a heterodimeric protein complex that can reversibly bind to ribosomes and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome.","definition_xrefs":["PMID:25487825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"nascent polypeptide-associated complex binding","synonyms":[{"name":"NAC binding","type":"exact"},{"name":"NACA binding","type":"exact"}],"termid":"GO:1990593"}


id: PBO:0084218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homolog of nuclear distribution factor NudE; NUDEL; interacts with Pac1p and regulates dynein targeting to microtubule plus ends","termid":"PBO:0084218"}


id: MONDO:0001480
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"testicular cancer","termid":"MONDO:0005447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant tumor of undescended testis","secondary_identifiers":["SCTID:188219004","UMLS:C0153595","ICD9:186.0","MEDGEN:509335","DOID:12276"],"synonyms":[{"name":"malignant neoplasm of retained testis","type":"exact"},{"name":"malignant neoplasm of undescended testis","type":"exact"},{"name":"malignant tumor of retained testis","type":"exact"},{"name":"malignant tumour of retained testis","type":"exact"}],"termid":"MONDO:0001480","xrefs":{"Monarch":{"xref_id":"0001480"}}}


id: PBO:0068681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 62, pseudogene","termid":"PBO:0068681"}


id: PBO:0034377
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-innervated_by","termid":"PBO:0034377"}


id: PBO:0039121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allograft inflammatory factor 1","termid":"PBO:0039121"}


id: PBO:0091051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane calcium ion import channel Cch1","termid":"PBO:0091051"}


id: FYPO:0005702
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to one or more microtubule organizing centers is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein localization to microtubule organizing center","synonyms":[{"name":"abnormal protein localisation to microtubule organizing centre","type":"exact"},{"name":"abnormal protein localization to microtubule organizing center during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to microtubule organizing center during vegetative growth","type":"exact"}],"termid":"FYPO:0005702"}


id: PBO:0055166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2587","termid":"PBO:0055166"}


id: PBO:0050766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 28","termid":"PBO:0050766"}


id: PBO:0042514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDAN1 interacting nuclease 1","termid":"PBO:0042514"}


id: PBO:0039325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arachidonate 12-lipoxygenase pseudogene 2","termid":"PBO:0039325"}


id: GO:0005544
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a phospholipid, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid binding","termid":"GO:0005543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0008289","GO:0005488"],"is_obsolete":false,"name":"calcium-dependent phospholipid binding","termid":"GO:0005544"}


id: GO:0097414
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cytoplasmic inclusion, 5 to 15 micrometers in diameter, with a dense core surrounded by a halo of 10 to 20 nm wide radially oriented alpha-synuclein fibrils.","definition_xrefs":["NIF_Subcellular:sao4749542545"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Lewy body","termid":"GO:0097413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"classical Lewy body","synonyms":[{"name":"brainstem Lewy body","type":"related"}],"termid":"GO:0097414"}


id: PBO:0045781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectodysplasin A2 receptor","termid":"PBO:0045781"}


id: PBO:0064792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPM1K divergent transcript","termid":"PBO:0064792"}


id: GO:0009332
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the ligation of glutamate and tRNA(Glu) to form glutamyl-tRNA(Glu).","definition_xrefs":["PMID:29679766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"glutamate-tRNA ligase complex","termid":"GO:0009332"}


id: GO:0019226
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The neurological system process in which a signal is transmitted through the nervous system by a combination of action potential propagation and synaptic transmission.","definition_xrefs":["GOC:curators","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process","termid":"GO:0050877"},{"relation_name":"part_of","term_name":"cell communication","termid":"GO:0007154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"transmission of nerve impulse","synonyms":[{"name":"conduction of nerve impulse","type":"exact"},{"name":"signal transmission along a neuron","type":"exact"}],"termid":"GO:0019226"}


id: MONDO:1012319
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"high-frequency tremor, non-human animal","termid":"MONDO:1011796"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high-frequency tremor, macaques","secondary_identifiers":["OMIA:001200-9539"],"termid":"MONDO:1012319","xrefs":{"Monarch":{"xref_id":"1012319"}}}


id: MONDO:0012775
data:
  {"annotated_genes":["SJAG_02744"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86104],"is_not":false,"summary":null,"term":"MONDO:0012775"}]},"cv_name":"mondo","definition":"Any thrombocytopenia in which the cause of the disease is a mutation in the CYCS gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited thrombocytopenia","termid":"MONDO:0100241"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02744":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"thrombocytopenia 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:394329","OMIM:612004","MESH:C567438","UMLS:C2677608","GARD:18289"],"synonyms":[{"name":"CYCS thrombocytopenia","type":"exact"},{"name":"THC4","type":"related"},{"name":"thrombocytopenia 4","type":"exact"},{"name":"thrombocytopenia caused by mutation in CYCS","type":"exact"},{"name":"thrombocytopenia type 4","type":"exact"},{"name":"thrombocytopenia, autosomal dominant, 4","type":"related"}],"termid":"MONDO:0012775","terms_by_termid":{"MONDO:0012775":null},"xrefs":{"Monarch":{"xref_id":"0012775"}}}


id: MONDO:0037253
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A stromal tumor that arises from the ovary and is characterized by the presence of cells that contain lipid and resemble theca cells. The vast majority of cases are benign.","definition_xrefs":["NCIT:C66989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovarian sex cord-stromal tumor","termid":"MONDO:0021657"},{"relation_name":"is_a","term_name":"thecoma","termid":"MONDO:0037252"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian thecoma","secondary_identifiers":["SCTID:254864005","MEDGEN:364155","UMLS:C1882229"],"synonyms":[{"name":"ovarian theca cell neoplasm","type":"exact"},{"name":"ovarian theca cell tumor","type":"exact"},{"name":"ovarian theca cell tumour","type":"exact"},{"name":"ovarian thecoma","type":"exact"},{"name":"ovary thecoma","type":"exact"},{"name":"theca cell neoplasm of ovary","type":"exact"},{"name":"theca cell neoplasm of the ovary","type":"exact"},{"name":"theca cell tumor of ovary","type":"exact"},{"name":"theca cell tumor of the ovary","type":"exact"},{"name":"theca cell tumour of ovary","type":"exact"},{"name":"theca cell tumour of the ovary","type":"exact"},{"name":"thecoma of ovary","type":"exact"},{"name":"thecoma of the ovary","type":"exact"}],"termid":"MONDO:0037253","xrefs":{"Monarch":{"xref_id":"0037253"}}}


id: PBO:0002749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malic acid transport protein Mae1","termid":"PBO:0002749"}


id: FYPO:0008014
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed during mitotic M phase in which the localization of a protein to CENP-A containing chromatin is decreased.","definition_xrefs":["PomBase:mlr","PMID:35970865"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to CENP-A containing chromatin","termid":"FYPO:0004313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to CENP-A containing chromatin during mitosis","synonyms":[{"name":"decreased protein localisation to CENP-A containing chromatin during mitosis","type":"exact"},{"name":"decreased protein localization to centromeric core region chromatin during mitosis","type":"exact"}],"termid":"FYPO:0008014"}


id: PR:Q9Y815
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rsv2 gene.","definition_xrefs":["UniProtKB:Q9Y815","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein rsv2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1105.14","synonyms":[{"name":"Spom972h-rsv2","type":"exact"},{"name":"required for stationary phase viability protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y815"}


id: PBO:0074811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 14C","termid":"PBO:0074811"}


id: FYPO:0004692
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle midzone is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to mitotic spindle","termid":"FYPO:0002966"},{"relation_name":"is_a","term_name":"normal protein localization to spindle","termid":"FYPO:0007865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0001320","FYPO:0000138","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to mitotic spindle midzone","synonyms":[{"name":"normal protein localisation to mitotic spindle midzone","type":"exact"},{"name":"normal protein localization to mitotic spindle midzone during mitotic cell cycle","type":"related"},{"name":"normal protein localization to mitotic spindle midzone during vegetative growth","type":"exact"}],"termid":"FYPO:0004692"}


id: PATO:0000209
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000209 digestive function (obsolete PATO:0000209)","termid":"PATO:0000209"}


id: MONDO:0014360
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the NECAP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"undetermined early-onset epileptic encephalopathy","termid":"MONDO:0018614"},{"relation_name":"is_a","term_name":"neonatal-onset developmental and epileptic encephalopathy","termid":"MONDO:0100455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0004736","MONDO:0005066","MONDO:0005027"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 21","secondary_identifiers":["MEDGEN:862867","UMLS:C4014430","GARD:16017","DOID:0080443","OMIM:615833"],"synonyms":[{"name":"DEE21","type":"exact"},{"name":"EIEE21","type":"exact"},{"name":"NECAP1 early infantile epileptic encephalopathy","type":"exact"},{"name":"developmental and epileptic encephalopathy 21","type":"exact"},{"name":"early infantile epileptic encephalopathy caused by mutation in NECAP1","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 21","type":"exact"},{"name":"epileptic encephalopathy, early infantile, type 21","type":"exact"}],"termid":"MONDO:0014360","xrefs":{"Monarch":{"xref_id":"0014360"}}}


id: GO:1990892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which chromosome arm chromatin structure is compacted prior to and during mitosis in eukaryotic cells.","definition_xrefs":["PMID:21633354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic chromosome condensation","termid":"GO:0007076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000070"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0000070","GO:0008150"],"is_obsolete":false,"name":"mitotic chromosome arm condensation","termid":"GO:1990892"}


id: SO:0001948
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is di-methylated.","definition_xrefs":["EBI:nj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3R2_dimethylation_site","synonyms":[{"name":"H3R2 dimethylation site","type":"exact"},{"name":"H3R2me2","type":"exact"}],"termid":"SO:0001948"}


id: PBO:0056826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAX dimerization protein MGA","termid":"PBO:0056826"}


id: GO:0070947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed killing of a fungal cell by a neutrophil.","definition_xrefs":["ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutrophil-mediated killing of symbiont cell","termid":"GO:0070943"},{"relation_name":"part_of","term_name":"defense response to fungus","termid":"GO:0050832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neutrophil-mediated killing of fungus","synonyms":[{"name":"neutrophil mediated killing of fungus","type":"exact"}],"termid":"GO:0070947"}


id: MONDO:0015734
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Rectal duplication is a rare congenital anorectal malformation characterized by an egg-like, cystic, mucus-filled mass, composed of intestinal mucosal lining and smooth muscle tissue. Commonly they present in childhood with symptoms of recurrent urinary tract infections, gastroenteritis, obstruction, perianal sepsis and rectal bleeding. Drainage of mucus or pus from the anus is also a typical presenting sign. The majority are found in the retro-rectal space where they communicate with, or are contiguous to, the rectum.","definition_xrefs":["Orphanet:171220"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anorectal malformation","termid":"MONDO:0019938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rectal duplication","secondary_identifiers":["icd11.foundation:1354283575","GARD:20122","MEDGEN:1393874","UMLS:C4511483","SCTID:725910009"],"termid":"MONDO:0015734","xrefs":{"Monarch":{"xref_id":"0015734"}}}


id: SO:0001312
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N6_2prime_O_dimethyladenosine is a modified adenosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_adenosine","termid":"SO:0001273"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6_2_prime_O_dimethyladenosine","secondary_identifiers":["RNAMOD:088"],"synonyms":[{"name":"N6 2 prime O dimethyladenosine","type":"exact"},{"name":"N6,2'-O-dimethyladenosine","type":"exact"},{"name":"m6Am","type":"exact"}],"termid":"SO:0001312"}


id: MOD:00716
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-methionine residue to a methylated methionine, such as N-methyl-L-methionine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-methionine residue","termid":"MOD:00913"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated methionine","synonyms":[{"name":"MeMet","type":"exact"}],"termid":"MOD:00716"}


id: PBO:0043365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clathrin heavy chain","termid":"PBO:0043365"}


id: FYPO:0006231
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of translational initiation in the cytoplasm is decreased during a cellular response to osmotic stress.","definition_xrefs":["PMID:16278445","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cytoplasmic translational initiation","termid":"FYPO:0003125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0006551","FYPO:0001320"],"is_obsolete":false,"name":"decreased cytoplasmic translational initiation during cellular response to osmotic stress","synonyms":[{"name":"decreased cytoplasmic translation initiation during cellular response to osmotic stress","type":"exact"},{"name":"decreased cytoplasmic translational initiation during cellular response to osmotic stress during mitotic cell cycle","type":"related"},{"name":"decreased cytoplasmic translational initiation during cellular response to osmotic stress during vegetative growth","type":"exact"},{"name":"reduced cytoplasmic translational initiation during cellular response to osmotic stress","type":"exact"}],"termid":"FYPO:0006231"}


id: MONDO:1011839
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"degenerative myelopathy, non-human animal","secondary_identifiers":["OMIA:000263"],"termid":"MONDO:1011839","xrefs":{"Monarch":{"xref_id":"1011839"}}}


id: MONDO:0014858
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant non-syndromic intellectual disability in which the cause of the disease is a mutation in the HIVEP2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant non-syndromic intellectual disability","termid":"MONDO:0015802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual disability, autosomal dominant 43","secondary_identifiers":["GARD:13179","SCTID:765434008","UMLS:C4310771","DOID:0070073","MEDGEN:934738","OMIM:616977"],"synonyms":[{"name":"HIVEP2 autosomal dominant non-syndromic intellectual disability","type":"exact"},{"name":"HIVEP2-related intellectual disability","type":"related"},{"name":"MRD43","type":"exact"},{"name":"autosomal dominant intellectual disability 43","type":"exact"},{"name":"autosomal dominant intellectual disability-43","type":"related"},{"name":"autosomal dominant mental retardation 43","type":"exact"},{"name":"autosomal dominant non-syndromic intellectual disability 43","type":"related"},{"name":"autosomal dominant non-syndromic intellectual disability caused by mutation in HIVEP2","type":"exact"},{"name":"intellectual disability, autosomal dominant 43","type":"exact"},{"name":"intellectual disability, autosomal dominant type 43","type":"exact"},{"name":"mental retardation, autosomal dominant 43","type":"exact"},{"name":"mental retardation, autosomal dominant type 43","type":"exact"}],"termid":"MONDO:0014858","xrefs":{"Monarch":{"xref_id":"0014858"}}}


id: MONDO:0021375
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm (disease) that involves the duodenum.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"duodenal disorder","termid":"MONDO:0002866"},{"relation_name":"is_a","term_name":"small intestine neoplasm","termid":"MONDO:0004251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"tumor of duodenum","secondary_identifiers":["SCTID:126833009","NCIT:C2995","MEDGEN:8503","UMLS:C0013291"],"synonyms":[{"name":"duodenal neoplasm","type":"exact"},{"name":"duodenal tumor","type":"exact"},{"name":"duodenal tumour","type":"exact"},{"name":"duodenum neoplasm","type":"exact"},{"name":"duodenum neoplasm (disease)","type":"exact"},{"name":"duodenum tumor","type":"exact"},{"name":"duodenum tumour","type":"exact"},{"name":"neoplasm of duodenum","type":"exact"},{"name":"neoplasm of the duodenum","type":"exact"},{"name":"tumor of duodenum","type":"exact"},{"name":"tumor of the duodenum","type":"exact"},{"name":"tumour of the duodenum","type":"exact"}],"termid":"MONDO:0021375","xrefs":{"Monarch":{"xref_id":"0021375"}}}


id: PBO:0072291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S24 pseudogene 9","termid":"PBO:0072291"}


id: PBO:0061693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 210 pseudogene 1","termid":"PBO:0061693"}


id: GO:0097546
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Area of the cilium (also called flagellum) where the basal body and the axoneme are anchored to the plasma membrane. The ciliary base encompasses the distal part of the basal body, transition fibers and transition zone and is structurally and functionally very distinct from the rest of the cilium. In this area proteins are sorted and filtered before entering the cilium, and many ciliary proteins localize specifically to this area.","definition_xrefs":["GOC:cilia","GOC:krc","PMID:22653444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ciliary base","synonyms":[{"name":"cilial base","type":"exact"},{"name":"cilium base","type":"exact"},{"name":"flagellar base","type":"exact"},{"name":"flagellum base","type":"exact"}],"termid":"GO:0097546"}


id: PBO:0079106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSC22D1 antisense RNA 1","termid":"PBO:0079106"}


id: PBO:0084624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Methionyl-tRNA formyltransferase; catalyzes formylation of mitochondria initiator Met-tRNA and residual cytosolic Met-tRNA due to inefficient translocation into the mitochondrial matrix; starvation or stationary phase entry increases Gcn2p phosphorylation-mediated cytosolic retention of Fmt1p, enhancing N-terminal protein formylation and ultimately N-end rule pathway mediated destruction that involves the Psh1p ubiquitin ligase; potential Cdc28p substrate","termid":"PBO:0084624"}


id: MONDO:0012322
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Holoprosencephaly associated with mutations in the ZIC2 gene.","definition_xrefs":["NCIT:C75460"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microform holoprosencephaly","termid":"MONDO:0017219"},{"relation_name":"is_a","term_name":"lobar holoprosencephaly","termid":"MONDO:0019756"},{"relation_name":"is_a","term_name":"alobar holoprosencephaly","termid":"MONDO:0019757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"holoprosencephaly 5","secondary_identifiers":["MEDGEN:355304","OMIM:609637","MESH:C566464","DOID:0110878","UMLS:C1864827"],"synonyms":[{"name":"HPE5","type":"exact"},{"name":"ZIC2 holoprosencephaly","type":"exact"},{"name":"holoprosencephaly 5","type":"exact"},{"name":"holoprosencephaly caused by mutation in ZIC2","type":"exact"},{"name":"holoprosencephaly type 5","type":"exact"}],"termid":"MONDO:0012322","xrefs":{"Monarch":{"xref_id":"0012322"}}}


id: MONDO:0008961
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Charcot-Marie-Tooth disease type 4A (CMT4A) is a subtype of Charcot-Marie-Tooth disease type 4 characterized by early-onset (infancy to early childhood) of severe, rapidly progressing demyelinating, axonal, or intermediate sensorimotor neuropathy usually affecting first, and more severely, the distal lower extremities and later the proximal muscles and upper extremities. Nerve conduction velocities range from very slow to normal. Apart from the typical CMT phenotype (distal muscle weakness and atrophy, sensory loss, frequent pes cavus foot deformity), patients commonly present delayed motor development, vocal cord paresis, mild sensory loss, abolished deep tendon reflexes, and skeletal deformities.","definition_xrefs":["Orphanet:99948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease recessive intermediate A","termid":"MONDO:0012014"},{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 4","termid":"MONDO:0018995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease type 4A","secondary_identifiers":["icd11.foundation:1476665103","MEDGEN:347821","OMIM:214400","SCTID:715796006","UMLS:C1859198","DOID:0110185","GARD:1252","MESH:C535419"],"synonyms":[{"name":"CMT4A","type":"exact"},{"name":"Charcot Marie Tooth disease type 4A","type":"related"},{"name":"Charcot-Marie-Tooth disease type 4 caused by mutation in GDAP1","type":"exact"},{"name":"Charcot-Marie-Tooth disease, demyelinating, autosomal recessive","type":"related"},{"name":"Charcot-Marie-Tooth disease, demyelinating, autosomal recessive, type 4A","type":"related"},{"name":"Charcot-Marie-Tooth disease, type 4A","type":"related"},{"name":"Charcot-Marie-Tooth neuropathy type 4A","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, type 4A","type":"related"},{"name":"GDAP1 Charcot-Marie-Tooth disease type 4","type":"exact"},{"name":"autosomal recessive demyelinating Charcot-Marie-Tooth disease type 4A","type":"exact"}],"termid":"MONDO:0008961","xrefs":{"Monarch":{"xref_id":"0008961"}}}


id: PBO:0080692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WNK lysine deficient protein kinase 4","termid":"PBO:0080692"}


id: GO:0046406
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: Mg-protoporphyrin IX + S-adenosyl-L-methionine = Mg-protoporphyrin IX 13-monomethyl ester + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:17809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"magnesium protoporphyrin IX methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R04237","MetaCyc:RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN","EC:2.1.1.11"],"synonyms":[{"name":"(-)-S-adenosyl-L-methionine:magnesium-protoporphyrin IX methyltransferase activity","type":"related"},{"name":"Mg-protoporphyrin IX methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:Mg protoporphyrin methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:magnesium-protoporphyrin O-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:magnesium-protoporphyrin-IX O-methyltransferase activity","type":"related"},{"name":"S-adenosylmethionine-magnesium protoporphyrin methyltransferase activity","type":"related"},{"name":"S-adenosylmethioninemagnesium protoporphyrin methyltransferase activity","type":"related"},{"name":"magnesium-protoporphyrin O-methyltransferase activity","type":"exact"}],"termid":"GO:0046406"}


id: PBO:0084981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH diphosphatase (pyrophosphatase); hydrolyzes the pyrophosphate linkage in NADH and related nucleotides; localizes to peroxisomes; enzymatic component of one of several partly redundant surveillance pathways involved in decapping of non-canonical nicotinamide adenine dinucleotide (NAD) capped nuclear NAD-RNAs; also possesses deCoAping activity involved in the decapping of non-canonical dephospho-CoA capped RNA (dpCoA-RNA); nudix hydrolase family member","termid":"PBO:0084981"}


id: PBO:0000871
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.2.2","termid":"PBO:0000871"}


id: GO:0003178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the valve of the coronary sinus over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart valve development","termid":"GO:0003170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"coronary sinus valve development","termid":"GO:0003178"}


id: GO:0034064
data:
  {"annotated_genes":["SJAG_00145","SJAG_02723","SJAG_04009"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[94947,106445,108601],"is_not":false,"summary":null,"term":"GO:0034064"}]},"cv_name":"cellular_component","definition":"A protein complex that contains the transcription factor Ste11 and the RNA binding protein Mei2; involved in regulation of conjugation in fission yeast.","definition_xrefs":["GOC:vw","PMID:17046992"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_02723":null,"SJAG_04009":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"Tor2-Mei2-Ste11 complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034064","terms_by_termid":{"GO:0034064":null}}


id: PBO:0070820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 50","termid":"PBO:0070820"}


id: PBO:0077288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM30B pseudogene 1","termid":"PBO:0077288"}


id: MONDO:0035349
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A localized form of dystrophic epidermolysis bullosa characterized by blisters confined primarily to the hands and feet (acral form) or to the pretibial region (pretibial form). Nail dystrophy or loss is common and may be an isolated finding (nail only form). This disease can be inherited via autosomal dominant or autosomal recessive inheritance.","definition_xrefs":["Orphanet:595356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa dystrophica","termid":"MONDO:0006543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"localized dystrophic epidermolysis bullosa","secondary_identifiers":["GARD:22388","MEDGEN:634276","UMLS:C0474885"],"synonyms":[{"name":"localised DEB","type":"exact"},{"name":"localized DEB","type":"exact"}],"termid":"MONDO:0035349","xrefs":{"Monarch":{"xref_id":"0035349"}}}


id: PBO:0039936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 40","termid":"PBO:0039936"}


id: PBO:0088251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAD superfamily hydrolase, unknown role","termid":"PBO:0088251"}


id: PBO:0114497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosome preservation factor; required for optimal translation under nutrient stress; forms dormant 80S ribosomes upon TORC1 inhibition, protects ribosomes from proteasomal degradation; perturbs association of Yef3p with ribosomes; binds G4 quadruplex and purine motif triplex nucleic acid; helps maintain telomere structure; protein abundance increases in response to DNA replication stress","termid":"PBO:0114497"}


id: GO:0003789
data:
  {"annotated_genes":["SJAG_03025"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92340],"is_not":false,"summary":null,"term":"GO:0003789"}]},"cv_name":"molecular_function","definition":"Binding to an actin subunit and promoting its dissociation from an actin filament by a local change in actin subunit conformation and orientation, and severing of filaments.","definition_xrefs":["PMID:11812157","PMID:23727096","PMID:23395798"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex destabilizing activity","termid":"GO:0140776"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03025":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"actin filament severing activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"actin depolymerizing activity","type":"exact"}],"termid":"GO:0003789","terms_by_termid":{"GO:0003789":null}}


id: MONDO:0042487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Stage 0 includes: (Tis, N0, M0). Tis: Carcinoma in situ. N0: No regional lymph node metastasis. M0: No distant metastasis. (AJCC 6th ed.) - 2003","definition_xrefs":["NCIT:C4000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uterus carcinoma in situ","termid":"MONDO:0004710"},{"relation_name":"is_a","term_name":"cervical carcinoma","termid":"MONDO:0005131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"uterine cervix carcinoma in situ","secondary_identifiers":["DOID:8991","SCTID:254889004","UMLS:C0851140","ICD9:233.1","MEDGEN:163094","MESH:D018290"],"synonyms":[{"name":"CIN 3 aJCC v6","type":"exact"},{"name":"CIN III","type":"exact"},{"name":"CIN III - carcinoma in situ of cervix","type":"exact"},{"name":"CIN III - severe dyskaryosis","type":"exact"},{"name":"CIN grade 3 aJCC v6","type":"exact"},{"name":"FIGO stage 0 carcinoma of cervix","type":"exact"},{"name":"FIGO stage 0 carcinoma of cervix uteri","type":"exact"},{"name":"FIGO stage 0 carcinoma of the cervix","type":"exact"},{"name":"FIGO stage 0 carcinoma of the cervix uteri","type":"exact"},{"name":"FIGO stage 0 carcinoma of the uterine cervix","type":"exact"},{"name":"FIGO stage 0 carcinoma of uterine cervix","type":"exact"},{"name":"FIGO stage 0 cervical carcinoma","type":"exact"},{"name":"FIGO stage 0 cervix carcinoma","type":"exact"},{"name":"FIGO stage 0 cervix uteri carcinoma","type":"exact"},{"name":"FIGO stage 0 uterine cervix carcinoma","type":"exact"},{"name":"carcinoma in situ of cervix","type":"exact"},{"name":"carcinoma in situ of cervix aJCC v6","type":"exact"},{"name":"carcinoma in situ of cervix uteri aJCC v6","type":"exact"},{"name":"carcinoma in situ of the cervix aJCC v6","type":"exact"},{"name":"carcinoma in situ of the cervix uteri aJCC v6","type":"exact"},{"name":"carcinoma in situ of the uterine cervix aJCC v6","type":"exact"},{"name":"carcinoma in situ of uterine cervix","type":"exact"},{"name":"carcinoma in situ of uterine cervix aJCC v6","type":"exact"},{"name":"carcinoma of cervix stage 0","type":"exact"},{"name":"cervical Severe dysplasia aJCC v6","type":"exact"},{"name":"cervical cancer stage 0 aJCC v6","type":"exact"},{"name":"cervical carcinoma in situ aJCC v6","type":"exact"},{"name":"cervical intraepithelial neoplasia grade 3 aJCC v6","type":"exact"},{"name":"cervical intraepithelial neoplasia grade III with severe dysplasia","type":"exact"},{"name":"cervix Ca in situ","type":"exact"},{"name":"cervix Severe dysplasia aJCC v6","type":"exact"},{"name":"cervix carcinoma in situ aJCC v6","type":"exact"},{"name":"cervix intraepithelial neoplasia grade 3 aJCC v6","type":"exact"},{"name":"cervix uteri Severe dysplasia aJCC v6","type":"exact"},{"name":"cervix uteri carcinoma in situ","type":"related"},{"name":"cervix uteri carcinoma in situ aJCC v6","type":"exact"},{"name":"cervix uteri intraepithelial neoplasia grade 3 aJCC v6","type":"exact"},{"name":"grade 3 cervical intraepithelial neoplasia aJCC v6","type":"exact"},{"name":"intraepithelial neoplasia of cervix grade 3 aJCC v6","type":"exact"},{"name":"intraepithelial neoplasia of cervix uteri grade 3 aJCC v6","type":"exact"},{"name":"intraepithelial neoplasia of the cervix grade 3 aJCC v6","type":"exact"},{"name":"intraepithelial neoplasia of the cervix uteri grade 3 aJCC v6","type":"exact"},{"name":"intraepithelial neoplasia of the uterine cervix grade 3 aJCC v6","type":"exact"},{"name":"intraepithelial neoplasia of uterine cervix grade 3 aJCC v6","type":"exact"},{"name":"severe cervical dysplasia aJCC v6","type":"exact"},{"name":"severe dysplasia of cervix","type":"exact"},{"name":"severe dysplasia of cervix aJCC v6","type":"exact"},{"name":"severe dysplasia of cervix uteri aJCC v6","type":"exact"},{"name":"severe dysplasia of the cervix aJCC v6","type":"exact"},{"name":"severe dysplasia of the cervix uteri aJCC v6","type":"exact"},{"name":"severe dysplasia of the uterine cervix aJCC v6","type":"exact"},{"name":"severe dysplasia of uterine cervix aJCC v6","type":"exact"},{"name":"squamous intraepithelial neoplasia, grade III","type":"exact"},{"name":"stage 0 cervical cancer","type":"exact"},{"name":"stage 0 cervical cancer aJCC v6","type":"exact"},{"name":"stage 0 uterine cervix carcinoma","type":"exact"},{"name":"uterine cervix Severe dysplasia aJCC v6","type":"exact"},{"name":"uterine cervix carcinoma in situ aJCC v6","type":"exact"},{"name":"uterine cervix intraepithelial neoplasia grade 3 aJCC v6","type":"exact"}],"termid":"MONDO:0042487","xrefs":{"Monarch":{"xref_id":"0042487"}}}


id: GO:0021721
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the superior olivary nucleus structure. In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound.","definition_xrefs":["GOC:jid","ISBN:0838580343","GOC:dgh","GOC:dph","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"},{"relation_name":"part_of","term_name":"pons structural organization","termid":"GO:0021585"},{"relation_name":"part_of","term_name":"superior olivary nucleus morphogenesis","termid":"GO:0021719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"superior olivary nucleus structural organization","synonyms":[{"name":"superior olivary nucleus structural organisation","type":"exact"}],"termid":"GO:0021721"}


id: PBO:0088884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II accessory factor, Cdc73 family","termid":"PBO:0088884"}


id: GO:1904784
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a NLRP1 inflammasome complex.","definition_xrefs":["GO_REF:0000079","PMID:19124602","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"canonical inflammasome complex assembly","termid":"GO:0140632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"NLRP1 inflammasome complex assembly","synonyms":[{"name":"NALP1 inflammasome complex assembly","type":"exact"},{"name":"NALP1 inflammasome complex formation","type":"exact"},{"name":"NLRP1 inflammasome complex formation","type":"exact"}],"termid":"GO:1904784"}


id: GO:0060869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by an extracellular ligand binding to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, which contributes to the process of floral organ abscission.","definition_xrefs":["GOC:dph","GOC:signaling","GOC:tb","GOC:sdb_2009"],"gene_count":0,"genotype_count":0,"name":"obsolete transmembrane receptor protein serine/threonine kinase signaling pathway involved in floral organ abscission (obsolete GO:0060869)","synonyms":[{"name":"transmembrane receptor protein serine/threonine kinase signalling pathway involved in floral organ abscission","type":"exact"}],"termid":"GO:0060869"}


id: PBO:0082433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bridging factor involved in ER-associated protein degradation (ERAD); bridges the cytosolic Cdc48p-Npl1p-Ufd1p ATPase complex and the membrane associated Ssm4p and Hrd1p ubiquitin ligase complexes; contains a UBX (ubiquitin regulatory X) domain and a ubiquitin-associated (UBA) domain; redistributes from the ER to lipid droplets during the diauxic shift and stationary phase; required for the maintenance of lipid homeostasis; required for mitochondrial protein translocation-associated degradation","termid":"PBO:0082433"}


id: MONDO:0012991
data:
  {"annotated_genes":["SJAG_04954"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85247],"is_not":false,"summary":null,"term":"MONDO:0012991"}]},"cv_name":"mondo","definition":"An autosomal recessive disease that is characterized by mental retardation, cataracts, coloboma, kyphosis, and coarse facial features and has material basis in mutation in the SRD5A3 gene.","definition_xrefs":["DOID:0050807","OMIM:612713","Orphanet:168972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04954":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Kahrizi syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C567196","UMLS:C2675185","MEDGEN:382543"],"synonyms":[{"name":"KHRZ","type":"related"},{"name":"Kahrizi syndrome","type":"exact"},{"name":"intellectual disability, cataract, coloboma, and kyphosis, autosomal recessive","type":"related"},{"name":"mental retardation, cataract, coloboma, and kyphosis, autosomal recessive","type":"related"}],"termid":"MONDO:0012991","terms_by_termid":{"MONDO:0012991":null},"xrefs":{"Monarch":{"xref_id":"0012991"}}}


id: SO:0001081
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif comprising two helices separated by a turn.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"has_part","term_name":"peptide_helix","termid":"SO:0001114"},{"relation_name":"has_part","term_name":"polypeptide_turn_motif","termid":"SO:0001128"},{"relation_name":"is_a","term_name":"polypeptide_structural_motif","termid":"SO:0001079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"helix_turn_helix","secondary_identifiers":["BS:00147"],"synonyms":[{"name":"HTH","type":"related"},{"name":"helix turn helix","type":"exact"},{"name":"helix-turn-helix","type":"exact"}],"termid":"SO:0001081"}


id: GO:0034790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (+)-(3S,4R)-cis-3,4-dihydroxy-3,4-dihydrofluorene = 3,4-dihydroxyfluorene + 2 H+ + 2 e-.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 3,4-dihydroxy-3,4-dihydrofluorene dehydrogenase activity (obsolete GO:0034790)","termid":"GO:0034790"}


id: PBO:0083861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Farnesyl-diphosphate farnesyl transferase (squalene synthase); joins two farnesyl pyrophosphate moieties to form squalene in the sterol biosynthesis pathway","termid":"PBO:0083861"}


id: GO:1990627
data:
  {"annotated_genes":["SJAG_02656"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104706],"is_not":false,"summary":null,"term":"GO:1990627"}]},"cv_name":"biological_process","definition":"The membrane organization process that joins two mitochondrial inner membranes to form a single membrane.","definition_xrefs":["GOC:vw","PMID:17055438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner mitochondrial membrane organization","termid":"GO:0007007"},{"relation_name":"part_of","term_name":"mitochondrial fusion","termid":"GO:0008053"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02656":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007005"},{"rel_name":"part_of","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007005","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"mitochondrial inner membrane fusion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrion inner membrane fusion","type":"exact"}],"termid":"GO:1990627","terms_by_termid":{"GO:1990627":null}}


id: GO:0046541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of saliva from the salivary glands. In man, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin.","definition_xrefs":["GOC:curators","UBERON:0001836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"body fluid secretion","termid":"GO:0007589"},{"relation_name":"is_a","term_name":"digestive system process","termid":"GO:0022600"},{"relation_name":"is_a","term_name":"secretion by tissue","termid":"GO:0032941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"saliva secretion","secondary_identifiers":["Wikipedia:Salivation"],"synonyms":[{"name":"salivation","type":"exact"}],"termid":"GO:0046541"}


id: PATO:0001563
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A mass which is higher than normal or average.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"mass","termid":"PATO:0000125"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased mass","secondary_identifiers":["PATO:0000578"],"synonyms":[{"name":"high mass","type":"exact"},{"name":"large mass","type":"exact"}],"termid":"PATO:0001563"}


id: PBO:0063360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate cancer expressed EZH2 associated transcript","termid":"PBO:0063360"}


id: PBO:0030481
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_GTP_binding","termid":"PBO:0030481"}


id: PBO:0091729
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swi Five-dependent Recombination mediator","termid":"PBO:0091729"}


id: PBO:0111903
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element","termid":"PBO:0111903"}


id: PBO:0040502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aurora kinase B pseudogene 1","termid":"PBO:0040502"}


id: FYPO:0004714
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more amino acid import RNAs measured in a cell is lower than normal (i.e. lower than observed in wild-type cells). Amino acid import RNAs are transcribed from genes whose products are involved in amino acid import into the cell or an organelle.","definition_xrefs":["PMID:18203864","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased level of amino acid import gene mRNA during vegetative growth","synonyms":[{"name":"decreased amino acid import gene mRNA accumulation during vegetative growth","type":"related"},{"name":"decreased level of amino acid import gene RNA during vegetative growth","type":"exact"},{"name":"decreased level of amino acid import gene mRNA during mitotic cell cycle","type":"related"},{"name":"decreased level of amino acid import gene transcripts during vegetative growth","type":"exact"},{"name":"reduced level of amino acid import gene mRNA during vegetative growth","type":"exact"}],"termid":"FYPO:0004714"}


id: PBO:0056723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meprin A subunit beta","termid":"PBO:0056723"}


id: PBO:0113108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; appears conserved and shows evidence of preservation by purifying selection within the Saccharomycotina subphylum; expression induced by iron-regulated transcriptional activator Aft2p","termid":"PBO:0113108"}


id: GO:0033744
data:
  {"annotated_genes":["SJAG_00419"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95358],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036456"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin.","definition_xrefs":["EC:1.8.4.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00419":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"L-methionine:thioredoxin-disulfide S-oxidoreductase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:1.8.4.13-RXN","RHEA:19993","KEGG_REACTION:R07606","GO:0000317"],"synonyms":[{"name":"L-methionine-(S)-S-oxide reductase activity","type":"narrow"},{"name":"L-methionine:oxidized-thioredoxin S-oxidoreductase activity","type":"related"},{"name":"acetylmethionine sulfoxide reductase activity","type":"related"},{"name":"fSMsr","type":"related"},{"name":"free-methionine (S)-S-oxide reductase activity","type":"related"},{"name":"methionine sulfoxide reductase activity","type":"broad"},{"name":"methionine-S-oxide reductase activity","type":"exact"},{"name":"methyl sulfoxide reductase I and II activity","type":"related"}],"termid":"GO:0033744","terms_by_termid":{"GO:0036456":null}}


id: GO:0031367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The removal of an amino group from the side chain of an N-terminal glutamine residue of a protein.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete N-terminal peptidyl-glutamine deamination (obsolete GO:0031367)","termid":"GO:0031367"}


id: PBO:0009818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eisosome protein Pil1","termid":"PBO:0009818"}


id: MONDO:0011489
data:
  {"annotated_genes":["SJAG_01848"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85504],"is_not":false,"summary":null,"term":"MONDO:0011489"}]},"cv_name":"mondo","definition":"Autosomal dominant spastic paraplegia type 12 is a pure form of hereditary spastic paraplegia characterized by a childhood- to adulthood-onset of slowly progressive lower limb spasticity and hyperreflexia of lower extremities, extensor plantar reflexes, distal sensory impairment, variable urinary dysfunction and pes cavus.","definition_xrefs":["Orphanet:100993"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pure hereditary spastic paraplegia","termid":"MONDO:0015149"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01848":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 12","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:9586","UMLS:C1858106","MESH:C537484","MEDGEN:347618","DOID:0110765","OMIM:604805","SCTID:763374004"],"synonyms":[{"name":"RTN2 hereditary spastic paraplegia","type":"exact"},{"name":"SPG12","type":"exact"},{"name":"autosomal dominant spastic paraplegia 12","type":"exact"},{"name":"autosomal dominant spastic paraplegia type 12","type":"exact"},{"name":"hereditary spastic paraplegia caused by mutation in RTN2","type":"exact"},{"name":"hereditary spastic paraplegia type 12","type":"exact"},{"name":"spastic paraplegia 12","type":"related"},{"name":"spastic paraplegia 12, autosomal dominant","type":"related"}],"termid":"MONDO:0011489","terms_by_termid":{"MONDO:0011489":null},"xrefs":{"Monarch":{"xref_id":"0011489"}}}


id: GO:0016722
data:
  {"annotated_genes":["SJAG_04677","SJAG_04042","SJAG_04743","SJAG_03862","SJAG_04459"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74334,78866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030586"},{"annotations":[112587],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052851"},{"annotations":[77324,71327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004322"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":5,"genes_by_uniquename":{"SJAG_03862":null,"SJAG_04042":null,"SJAG_04459":null,"SJAG_04677":null,"SJAG_04743":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"oxidoreductase activity, acting on metal ions","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-917805","EC:1.16.-.-"],"synonyms":[{"name":"oxidoreductase activity, oxidizing metal ions","type":"related"},{"name":"oxidoreductase activity, reducing metal ions","type":"related"}],"termid":"GO:0016722","terms_by_termid":{"GO:0004322":null,"GO:0030586":null,"GO:0052851":null}}


id: PBO:0053294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM zinc finger domain containing 1","termid":"PBO:0053294"}


id: MONDO:0020285
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete transposition of the great arteries and conotruncal cardiac anomaly (obsolete MONDO:0020285)","secondary_identifiers":["Orphanet:98717"],"termid":"MONDO:0020285","xrefs":{"Monarch":{"xref_id":"0020285"}}}


id: PBO:0080943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zygote arrest 1 like","termid":"PBO:0080943"}


id: PBO:0069282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 538, pseudogene","termid":"PBO:0069282"}


id: MONDO:0020280
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete metabolic disease with cataract (obsolete MONDO:0020280)","secondary_identifiers":["Orphanet:98712"],"termid":"MONDO:0020280","xrefs":{"Monarch":{"xref_id":"0020280"}}}


id: PBO:0058048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4269","termid":"PBO:0058048"}


id: PBO:0051166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-49","termid":"PBO:0051166"}


id: PBO:0078829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro (anticodon AGG) 6-1","termid":"PBO:0078829"}


id: PBO:0029535
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_normal_volume_spheroid_vegetative_cell","termid":"PBO:0029535"}


id: MONDO:0005596
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant cystic epithelial neoplasm arising from the glandular epithelium. The malignant epithelial cells invade the stroma. The cystic spaces contain serous or mucinous fluid. Representative examples include ovarian and pancreatic cystadenocarcinomas.","definition_xrefs":["NCIT:C2971"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenocarcinoma","termid":"MONDO:0004970"},{"relation_name":"is_a","term_name":"cystic neoplasm","termid":"MONDO:0021077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cystadenocarcinoma","secondary_identifiers":["ICDO:8440/3","MESH:D003536","EFO:0006387","DOID:3111","UMLS:C0010631","MEDGEN:41385"],"synonyms":[{"name":"cystadenocarcinoma","type":"exact"},{"name":"cystadenocarcinoma (morphologic abnormality)","type":"exact"},{"name":"cystadenocarcinoma NOS (morphologic abnormality)","type":"exact"},{"name":"cystadenocarcinoma, malignant","type":"exact"}],"termid":"MONDO:0005596","xrefs":{"Monarch":{"xref_id":"0005596"}}}


id: GO:0043656
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"That space within the plasma membrane of a host cell.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host intracellular region","synonyms":[{"name":"host intracellular","type":"exact"},{"name":"intracellular region of host","type":"exact"}],"termid":"GO:0043656"}


id: PBO:0082339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent 5'-flap endonuclease and DNA helicase; tracking protein for flap cleavage during Okazaki fragment maturation; involved in DNA repair/processing of meiotic DNA double strand breaks; cell cycle-dependent localization to telomeric chromatin and replicating chromosomes; required for telomerase-dependent telomere synthesis; stability, localization and nuclease activity regulated by sumoylation; forms nuclear foci upon replication stress; human homolog DNA2 complements yeast dna2 mutant","termid":"PBO:0082339"}


id: MOD:00838
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes three (1)H protium atoms with three (2)H deuterium atoms to produce 3x(2)H labeled L-leucine.","definition_xrefs":["Unimod:262#L"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deuterium trisubstituted residue","termid":"MOD:00585"},{"relation_name":"is_a","term_name":"modified L-leucine residue","termid":"MOD:00911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3x(2)H labeled L-leucine","synonyms":[{"name":"D(H)3Leu","type":"exact"},{"name":"Label:2H(3)","type":"related"},{"name":"Trideuteration","type":"related"}],"termid":"MOD:00838"}


id: PBO:0048080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin light chain pseudogene 1","termid":"PBO:0048080"}


id: GO:0009745
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by the detection of sucrose.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sugar mediated signaling pathway","termid":"GO:0010182"},{"relation_name":"part_of","term_name":"cellular response to sucrose stimulus","termid":"GO:0071329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"sucrose mediated signaling","synonyms":[{"name":"sucrose mediated signalling","type":"exact"}],"termid":"GO:0009745"}


id: GO:0002704
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of leukocyte mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"regulation of leukocyte mediated immunity","termid":"GO:0002703"},{"relation_name":"negatively_regulates","term_name":"leukocyte mediated immunity","termid":"GO:0002443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of leukocyte mediated immunity","synonyms":[{"name":"down regulation of leukocyte mediated immunity","type":"exact"},{"name":"down-regulation of leukocyte mediated immunity","type":"exact"},{"name":"downregulation of leukocyte mediated immunity","type":"exact"},{"name":"inhibition of leukocyte mediated immunity","type":"narrow"},{"name":"negative regulation of immune cell mediated immunity","type":"exact"},{"name":"negative regulation of leucocyte mediated immunity","type":"exact"}],"termid":"GO:0002704"}


id: PBO:0079166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSPEAR antisense RNA 1","termid":"PBO:0079166"}


id: PBO:0062832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"odd-skipped related transciption factor 2","termid":"PBO:0062832"}


id: GO:0075049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont cell wall strengthening during entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of symbiont cell wall strengthening involved in entry into host (obsolete GO:0075049)","synonyms":[{"name":"modulation of symbiont cell wall strengthening during entry into host","type":"related"}],"termid":"GO:0075049"}


id: PBO:0036364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malate transmembrane transporter (predicted)","termid":"PBO:0036364"}


id: PBO:0068484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 65, pseudogene","termid":"PBO:0068484"}


id: GO:0036376
data:
  {"annotated_genes":["SJAG_01541"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[66787],"is_not":false,"summary":null,"term":"GO:0036376"}]},"cv_name":"biological_process","definition":"The directed movement of sodium ions from inside of a cell, across the plasma membrane and into the extracellular region.","definition_xrefs":["GOC:vw","PMID:14674689"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium ion transmembrane transport","termid":"GO:0035725"},{"relation_name":"is_a","term_name":"export across plasma membrane","termid":"GO:0140115"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01541":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"sodium ion export across plasma membrane","references_by_uniquename":{"GO_REF:0000002":null},"secondary_identifiers":["GO:0071436","GO:0098667"],"synonyms":[{"name":"sodium export","type":"related"},{"name":"sodium ion export","type":"related"},{"name":"sodium ion export from cell","type":"exact"}],"termid":"GO:0036376","terms_by_termid":{"GO:0036376":null}}


id: MONDO:0100217
data:
  {"annotated_genes":["SJAG_04085"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85562],"is_not":false,"summary":null,"term":"MONDO:0100217"}]},"cv_name":"mondo","definition":"Any developmental delay with short stature, dysmorphic facial features, and sparse hair in which the cause of the disease is a mutation in the DPH2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental delay with short stature, dysmorphic facial features, and sparse hair","termid":"MONDO:0031632"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04085":null},"genotype_count":0,"is_obsolete":false,"name":"developmental delay with short stature, dysmorphic facial features, and sparse hair 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1823996","OMIM:620062","DOID:0070478","UMLS:C5774223"],"synonyms":[{"name":"DEDSSH2","type":"exact"},{"name":"diphthamide deficiency syndrome 2","type":"exact"}],"termid":"MONDO:0100217","terms_by_termid":{"MONDO:0100217":null},"xrefs":{"Monarch":{"xref_id":"0100217"}}}


id: GO:0021716
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the inferior olivary nucleus structure. The inferior olivary nucleus is a capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids. Neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex; these neurons have been implicated in various functions, such as learning and timing of movements.","definition_xrefs":["ISBN:0838580343","GOC:jid","GOC:cls","GO_REF:0000021","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"},{"relation_name":"part_of","term_name":"medulla oblongata structural organization","termid":"GO:0021581"},{"relation_name":"part_of","term_name":"inferior olivary nucleus morphogenesis","termid":"GO:0021714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inferior olivary nucleus structural organization","synonyms":[{"name":"inferior olivary nucleus structural organisation","type":"exact"},{"name":"inferior olive structural organization","type":"related"}],"termid":"GO:0021716"}


id: GO:0141040
data:
  {"annotated_genes":["SJAG_00630"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[68649],"is_not":false,"summary":null,"term":"GO:0141040"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a very-long-chain (3R)-3-hydroxyacyl-CoA + NADP+ = a very-long-chain 3-oxoacyl-CoA + H+ + NADPH. This reaction is the second (reduction) step of the four-step fatty acid elongation cycle in the endoplasmic reticulum that extends fatty acids of C-16 or longer with an additional 2-C unit.","definition_xrefs":["RHEA:48680","PMID:16564093","PMID:19763486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00630":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"very-long-chain 3-oxoacyl-CoA reductase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["MetaCyc:RXN-7698","EC:1.1.1.330","Reactome:R-HSA-548818"],"termid":"GO:0141040","terms_by_termid":{"GO:0141040":null}}


id: GO:0018565
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1,2-dihydroxydibenzothiophene + O2 = cis-4-(2-(3-hydroxy)-thionaphthenyl)-2-oxo-3-butenoate.","definition_xrefs":["UM-BBD_reactionID:r0162"],"gene_count":0,"genotype_count":0,"name":"obsolete dihydroxydibenzothiophene dioxygenase activity (obsolete GO:0018565)","termid":"GO:0018565"}


id: GO:0014072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an isoquinoline alkaloid stimulus. An isoquinoline alkaloid is any member of a group of compounds with the heterocyclic ring structure of benzo(c)pyridine which is a structure characteristic of the group of opium alkaloids.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to alkaloid","termid":"GO:0043279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to isoquinoline alkaloid","termid":"GO:0014072"}


id: GO:0090640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The phosphatidylcholine biosynthetic process that involves the two-step acylation of sn-glycero-3-phosphocholine to a phosphatidylcholine.","definition_xrefs":["PMID:24329598","MetaCyc:PWY-7470","PMID:27758859"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylcholine biosynthetic process","termid":"GO:0006656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"phosphatidylcholine biosynthesis from sn-glycero-3-phosphocholine","termid":"GO:0090640"}


id: PBO:0075626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPRING1 pseudogene 3","termid":"PBO:0075626"}


id: PBO:0078179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta joining 2-3","termid":"PBO:0078179"}


id: PBO:0052153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KCNJ2 antisense RNA 1","termid":"PBO:0052153"}


id: GO:0047915
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-galactose + N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-1,4-beta-D-glucosyl-N-acylsphingosine = UDP + D-galactosyl-1,3-beta-N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-N-acylsphingosine.","definition_xrefs":["MetaCyc:GANGLIOSIDE-GALACTOSYLTRANSFERASE-RXN","EC:2.4.1.62"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"ganglioside galactosyltransferase activity","secondary_identifiers":["RHEA:16773"],"synonyms":[{"name":"GM1-synthase activity","type":"related"},{"name":"UDP galactose-LAC Tet-ceramide alpha-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose-GM2 galactosyltransferase activity","type":"related"},{"name":"UDP-galactose-GM2 ganglioside galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-N-acylsphingosine beta-1,3-D-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:N-acetylgalactosaminyl-(N-acetylneuraminyl) galactosyl-glucosyl-ceramide galactosyltransferase activity","type":"related"},{"name":"UDPgalactose-ceramide galactosyltransferase activity","type":"related"},{"name":"UDPgalactose:N-acetyl-D-galactosaminyl-(N-acetylneuraminyl)-D-galactosyl-D-glucosyl-N-acylsphingosine beta-1,3-D-galactosyltransferase activity","type":"related"},{"name":"uridine diphosphate D-galactose:glycolipid galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-GM2 galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-ceramide galactosyltransferase activity","type":"related"}],"termid":"GO:0047915"}


id: PBO:0001579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-3 adaptor complex subunit Apl6 (predicted)","termid":"PBO:0001579"}


id: MONDO:0015486
data:
  {"annotated_genes":["SJAG_02509","SJAG_04387"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85793,85792],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054771"}]},"cv_name":"mondo","definition":"A degenerative, structural disorder of the eye, characterized by a cone-shaped protrusion of the cornea. It may lead to visual disturbances.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corneal disorder","termid":"MONDO:0000942"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02509":null,"SJAG_04387":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"keratoconus","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:156071","NCIT:C26806","UMLS:C0022578","MESH:D007640","SCTID:65636009","GARD:6824","HP:0000563","icd11.foundation:945228622","MEDGEN:44015","DOID:10126","MedDRA:10023353","ICD9:371.6","ICD9:371.60","Orphanet:2335","OMIMPS:148300"],"synonyms":[{"name":"KC","type":"related"},{"name":"conical cornea","type":"exact"},{"name":"isolated keratoconus","type":"narrow"},{"name":"keratoconus","type":"exact"},{"name":"keratoconus (disease)","type":"exact"},{"name":"noninflammatory corneal thining","type":"related"}],"termid":"MONDO:0015486","terms_by_termid":{"MONDO:0054771":null},"xrefs":{"Monarch":{"xref_id":"0015486"}}}


id: GO:0140799
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glycine(out) + H+(in) = glycine(in) + H+(out).","definition_xrefs":["PMID:16701208","PMID:26912364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"glycine transmembrane transporter activity","termid":"GO:0015187"},{"relation_name":"is_a","term_name":"amino acid:monoatomic cation antiporter activity","termid":"GO:0140848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"glycine:proton antiporter activity","termid":"GO:0140799"}


id: PBO:0016921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific protein Mug116","termid":"PBO:0016921"}


id: GO:0035119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring in the embryo, by which the anatomical structures of the pelvic fin are generated and organized. The pelvic fins are bilaterally paired fins mounted in a ventral-lateral position on most fish. These fins are used primarily for lateral mobility and propulsion.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic appendage morphogenesis","termid":"GO:0035113"},{"relation_name":"is_a","term_name":"pelvic fin morphogenesis","termid":"GO:0035139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic pelvic fin morphogenesis","termid":"GO:0035119"}


id: GO:1903602
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of thermospermine.","definition_xrefs":["GOC:TermGenie","PMID:24906355","GO_REF:0000068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine catabolic process","termid":"GO:0006598"},{"relation_name":"is_a","term_name":"thermospermine metabolic process","termid":"GO:1903601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thermospermine catabolic process","synonyms":[{"name":"thermospermine breakdown","type":"exact"},{"name":"thermospermine catabolism","type":"exact"},{"name":"thermospermine degradation","type":"exact"}],"termid":"GO:1903602"}


id: MONDO:0012571
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ciliary dyskinesia in which the cause of the disease is a mutation in the NME8 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia","termid":"MONDO:0016575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia 6","secondary_identifiers":["GARD:15502","MESH:C567057","DOID:0110606","MEDGEN:370930","OMIM:610852","UMLS:C1970506"],"synonyms":[{"name":"CILD6","type":"exact"},{"name":"NME8 primary ciliary dyskinesia","type":"exact"},{"name":"ciliary dyskinesia, primary, 6","type":"related"},{"name":"ciliary dyskinesia, primary, type 6","type":"exact"},{"name":"primary ciliary dyskinesia caused by mutation in NME8","type":"exact"},{"name":"primary ciliary dyskinesia type 6","type":"exact"}],"termid":"MONDO:0012571","xrefs":{"Monarch":{"xref_id":"0012571"}}}


id: PBO:0080005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP12 divergent transcript","termid":"PBO:0080005"}


id: SO:1000066
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A mutation causing a disruption of the translational reading frame, due to the insertion of a nucleotide.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000066 sequence_variant_causing_plus_1_frameshift_mutation (obsolete SO:1000066)","synonyms":[{"name":"plus 1 frameshift mutation","type":"exact"},{"name":"sequence variant causing plus 1 frameshift mutation","type":"exact"}],"termid":"SO:1000066"}


id: GO:0016191
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of the protein coat on a synaptic vesicle following the pinching step at the end of budding from the presynaptic membrane.","definition_xrefs":["GOC:curators","PMID:10099709","PMID:24596248"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin coat disassembly","termid":"GO:0072318"},{"relation_name":"part_of","term_name":"synaptic vesicle endocytosis","termid":"GO:0048488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"synaptic vesicle uncoating","synonyms":[{"name":"synaptic vesicle coat depolymerization","type":"exact"},{"name":"synaptic vesicle coat protein depolymerization","type":"exact"}],"termid":"GO:0016191"}


id: PBO:0082264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aminopeptidase yscII; may have a role in obtaining leucine from dipeptide substrates; APE2 has a paralog, AAP1, that arose from the whole genome duplication","termid":"PBO:0082264"}


id: SO:0002013
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that causes the reduction of a the 5'UTR with regard to the reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5_prime_UTR_variant","termid":"SO:0001623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_prime_UTR_truncation","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html"],"synonyms":[{"name":"5 prime UTR truncation","type":"exact"},{"name":"Jannovar:5_prime_utr_truncation","type":"exact"},{"name":"snpEff:UTR_5_DELETED","type":"exact"}],"termid":"SO:0002013"}


id: PBO:0000727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial anion transporter (predicted)","termid":"PBO:0000727"}


id: PBO:0028766
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_rate_of_homologous_chromosome_pairing_at_cis-acting_homologous_chromosome_pairing_region","termid":"PBO:0028766"}


id: MONDO:0006824
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Carcinoma having known association to krebs2 gene mutation","definition_xrefs":["EFO:1001007"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"Krebs 2 carcinoma","secondary_identifiers":["UMLS:C0007128","MEDGEN:2842","MESH:D002287"],"termid":"MONDO:0006824","xrefs":{"Monarch":{"xref_id":"0006824"}}}


id: GO:0002000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the juxtaglomerular cells of the kidneys receive information about the amount of blood flowing through the arterioles and converts the information to a molecular signal.","definition_xrefs":["ISBN:0721643949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of mechanical stimulus","termid":"GO:0050982"},{"relation_name":"part_of","term_name":"renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure","termid":"GO:0001999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of renal blood flow","termid":"GO:0002000"}


id: MONDO:0014757
data:
  {"annotated_genes":["SJAG_04509"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85703],"is_not":false,"summary":null,"term":"MONDO:0014757"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"congenital hematological disorder","termid":"MONDO:0009332"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"syndromic constitutional thrombocytopenia","termid":"MONDO:0018795"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"macrothrombocytopenia-lymphedema-developmental delay-facial dysmorphism-camptodactyly syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4225222","GARD:17884","MEDGEN:906646","OMIM:616737","Orphanet:487796","NANDO:2200985"],"synonyms":[{"name":"TAKENOUCHI-Kosaki syndrome","type":"related"},{"name":"TKS","type":"related"},{"name":"Takenouchi-Kosaki syndrome","type":"exact"},{"name":"macrothrombocytopenia and intellectual disability syndrome","type":"related"},{"name":"macrothrombocytopenia and mental retardation syndrome","type":"related"}],"termid":"MONDO:0014757","terms_by_termid":{"MONDO:0014757":null},"xrefs":{"Monarch":{"xref_id":"0014757"}}}


id: PBO:0018158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-galactose transmembrane transporter Gms1","termid":"PBO:0018158"}


id: GO:0010081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in maintaining the size and shape of an inflorescence meristem.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of meristem growth","termid":"GO:0010075"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"inflorescence meristem growth","termid":"GO:0010450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of inflorescence meristem growth","synonyms":[{"name":"regulation of inflorescence meristem size","type":"exact"}],"termid":"GO:0010081"}


id: MONDO:0005135
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A successful invasion of a host by an organism that uses the host for food and shelter.","definition_xrefs":["NCIT:C27864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infectious disease","termid":"MONDO:0005550"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parasitic infectious disease","secondary_identifiers":["ICD9:134.8","ICD9:376.13","DOID:1398","ICD9:129","MEDGEN:45325","SCTID:17322007","ICD9:136.4","ICD9:136.9","ICD9:360.13","UMLS:C0030499","MESH:D010272","EFO:0001067","ICD9:136.8","ICD9:134.9"],"synonyms":[{"name":"disease caused by parasite","type":"exact"},{"name":"disease, parasitic","type":"related"},{"name":"diseases, parasitic","type":"related"},{"name":"ectoparasitic disease","type":"narrow"},{"name":"infestation","type":"related"},{"name":"parasite infestation","type":"related"},{"name":"parasitemia","type":"narrow"},{"name":"parasitic disease","type":"exact"},{"name":"parasitic infection","type":"exact"},{"name":"parasitic infectious disease","type":"exact"},{"name":"parasitism","type":"related"},{"name":"parasitosis","type":"related"}],"termid":"MONDO:0005135","xrefs":{"Monarch":{"xref_id":"0005135"}}}


id: GO:0044432
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of the endoplasmic reticulum, the irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete endoplasmic reticulum part (obsolete GO:0044432)","synonyms":[{"name":"ER component","type":"exact"}],"termid":"GO:0044432"}


id: GO:0004013
data:
  {"annotated_genes":["SJAG_03556"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77342],"is_not":false,"summary":null,"term":"GO:0004013"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenosine + L-homocysteine.","definition_xrefs":["RHEA:21708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-sulfur bonds","termid":"GO:0046508"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03556":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"adenosylhomocysteinase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:ADENOSYLHOMOCYSTEINASE-RXN","Reactome:R-HSA-174401","EC:3.13.2.1","Reactome:R-HSA-5579084"],"synonyms":[{"name":"AdoHcyase activity","type":"related"},{"name":"S-adenosyl-L-homocysteine hydrolase activity","type":"related"},{"name":"S-adenosylhomocysteinase activity","type":"related"},{"name":"S-adenosylhomocysteine hydrolase activity","type":"broad"},{"name":"S-adenosylhomocysteine synthase activity","type":"related"},{"name":"SAHase activity","type":"related"},{"name":"adenosylhomocysteine hydrolase activity","type":"related"}],"termid":"GO:0004013","terms_by_termid":{"GO:0004013":null}}


id: FYPO:0003757
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic sister chromatid segregation stops before completing separation of chromosomes; some, but not all, DNA may be moved towards the ends of an elongated mitotic spindle.","definition_xrefs":["PMID:8978688","PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic sister chromatid segregation","termid":"FYPO:0000141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000641","FYPO:0000631","FYPO:0000337","FYPO:0005447"],"is_obsolete":false,"name":"incomplete mitotic sister chromatid segregation","synonyms":[{"name":"arrested mitotic sister chromatid segregation","type":"related"}],"termid":"FYPO:0003757"}


id: GO:0014047
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of glutamate by a cell. The glutamate is the most abundant excitatory neurotransmitter in the nervous system.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transport","termid":"GO:0006835"},{"relation_name":"is_a","term_name":"acidic amino acid transport","termid":"GO:0015800"},{"relation_name":"is_a","term_name":"secretion by cell","termid":"GO:0032940"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"glutamate secretion","termid":"GO:0014047"}


id: PBO:0066007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ral GEF with PH domain and SH3 binding motif 2","termid":"PBO:0066007"}


id: GO:0044540
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cystine + H2O = pyruvate + NH3 + thiocysteine. Thiocysteine is also known as cysteine persulfide.","definition_xrefs":["RHEA:24927","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"L-cystine L-cysteine-lyase (deaminating)","secondary_identifiers":["EC:4.4.1.35","KEGG_REACTION:R02408"],"termid":"GO:0044540"}


id: PBO:0017608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyoxalase II","termid":"PBO:0017608"}


id: GO:0000830
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 4-diphospho-1D-myo-inositol (1,2,3,5,6)pentakisphosphate.","definition_xrefs":["PMID:16429326","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol hexakisphosphate kinase activity","termid":"GO:0000828"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"inositol hexakisphosphate 4-kinase activity","termid":"GO:0000830"}


id: PBO:0086949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ family nucleolar DNA helicase; role in genome integrity maintenance, chromosome synapsis, meiotic joint molecule/crossover formation; stimulates activity of Top3p; rapidly lost in response to rapamycin in Rrd1p-dependent manner; forms nuclear foci upon DNA replication stress; yeast SGS1 complements mutations in human homolog BLM implicated in Bloom syndrome; also similar to human WRN implicated in Werner syndrome; human BLM and WRN can each complement yeast null mutant","termid":"PBO:0086949"}


id: PBO:0043772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX20 pseudogene 1","termid":"PBO:0043772"}


id: GO:0035774
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.","definition_xrefs":["GOC:bf","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of insulin secretion","termid":"GO:0032024"},{"relation_name":"is_a","term_name":"regulation of insulin secretion involved in cellular response to glucose stimulus","termid":"GO:0061178"},{"relation_name":"positively_regulates","term_name":"insulin secretion involved in cellular response to glucose stimulus","termid":"GO:0035773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of insulin secretion involved in cellular response to glucose stimulus","synonyms":[{"name":"positive regulation of insulin secretion in response to glucose","type":"exact"}],"termid":"GO:0035774"}


id: PBO:0067099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 140, pseudogene","termid":"PBO:0067099"}


id: PBO:0062441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 105 pseudogene","termid":"PBO:0062441"}


id: MONDO:0002008
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the inner ear. The cause is often not clear. It may be due to a virus, but it can also arise from bacterial infection, head injury, extreme stress, an allergy, or as a reaction to medication.","definition_xrefs":["NCIT:C128369","Wikipedia:Labyrinthitis"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"infectious otitis interna","termid":"MONDO:0002812"},{"relation_name":"is_a","term_name":"inner ear disorder","termid":"MONDO:0002467"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"labyrinthitis","secondary_identifiers":["icd11.foundation:901550793","MESH:D007762","SCTID:23919004","DOID:3930","MEDGEN:5991","ICD10CM:H83.0","UMLS:C0022893","EFO:0009604","DOID:1468","ICD9:386.3","ICD9:386.30"],"synonyms":[{"name":"inflammation of internal ear","type":"exact"},{"name":"inner ear infection","type":"related"},{"name":"internal ear inflammation","type":"exact"},{"name":"otitis interna","type":"exact"}],"termid":"MONDO:0002008","xrefs":{"Monarch":{"xref_id":"0002008"}}}


id: GO:0060909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of initiation of plasmid DNA replication that contributes to copy number maintenance.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated DNA replication initiation","termid":"GO:0030174"},{"relation_name":"part_of","term_name":"plasmid copy number maintenance","termid":"GO:0060908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006260"],"is_obsolete":false,"name":"regulation of DNA replication initiation involved in plasmid copy number maintenance","termid":"GO:0060909"}


id: PATO:0001149
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001149 susceptibility value (obsolete PATO:0001149)","termid":"PATO:0001149"}


id: PBO:0050832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HYOU1 antisense RNA 1","termid":"PBO:0050832"}


id: MONDO:0019492
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete desmoid tumor (obsolete MONDO:0019492)","termid":"MONDO:0019492","xrefs":{"Monarch":{"xref_id":"0019492"}}}


id: MONDO:0030268
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0005027"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy 6B","secondary_identifiers":["DOID:0070379","MEDGEN:1779648","OMIM:619317","UMLS:C5543353"],"synonyms":[{"name":"DEE6B","type":"exact"},{"name":"developmental and epileptic encephalopathy 6B","type":"exact"},{"name":"developmental and epileptic encephalopathy 6B, non-Dravet","type":"exact"}],"termid":"MONDO:0030268","xrefs":{"Monarch":{"xref_id":"0030268"}}}


id: PBO:0050667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 4 like","termid":"PBO:0050667"}


id: MONDO:0002531
data:
  {"annotated_genes":["SJAG_01111","SJAG_02855","SJAG_03453","SJAG_04213"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85131],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010621"},{"annotations":[86591],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044792"},{"annotations":[85683],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008097"},{"annotations":[85263],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009578"},{"annotations":[84840],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008093"},{"annotations":[87108,87109],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0024517"}]},"cv_name":"mondo","definition":"A benign or malignant tumor involving the skin. Representative examples of benign skin neoplasms include the benign melanocytic skin nevus, acanthoma, sebaceous adenoma, sweat gland adenoma, lipoma, hemangioma, fibroma, and benign fibrous histiocytoma. Representative examples of malignant skin neoplasms include basal cell carcinoma, squamous cell carcinoma, melanoma, and Kaposi sarcoma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"},{"relation_name":"is_a","term_name":"skin disorder","termid":"MONDO:0005093"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01111":null,"SJAG_02855":null,"SJAG_03453":null,"SJAG_04213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"skin neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0037286","SCTID:126488004","DOID:3165","MEDGEN:19993","EFO:0004198","ICD9:239.2","ONCOTREE:SKIN","MESH:D012878","NCIT:C3372"],"synonyms":[{"name":"neoplasm of skin","type":"exact"},{"name":"neoplasm of skin by site","type":"exact"},{"name":"neoplasm of the skin","type":"exact"},{"name":"neoplasm of zone of skin","type":"exact"},{"name":"skin","type":"related"},{"name":"skin benign neoplasm","type":"related"},{"name":"skin neoplasm","type":"exact"},{"name":"skin neoplasms","type":"exact"},{"name":"skin tumor","type":"exact"},{"name":"skin tumour","type":"exact"},{"name":"tumor of skin","type":"exact"},{"name":"tumor of the skin","type":"exact"},{"name":"tumor of zone of skin","type":"exact"},{"name":"tumour of skin","type":"exact"},{"name":"tumour of the skin","type":"exact"},{"name":"tumour of zone of skin","type":"exact"},{"name":"zone of skin neoplasm","type":"exact"},{"name":"zone of skin neoplasm (disease)","type":"exact"},{"name":"zone of skin tumor","type":"exact"},{"name":"zone of skin tumour","type":"exact"}],"termid":"MONDO:0002531","terms_by_termid":{"MONDO:0008093":null,"MONDO:0008097":null,"MONDO:0009578":null,"MONDO:0010621":null,"MONDO:0024517":null,"MONDO:0044792":null},"xrefs":{"Monarch":{"xref_id":"0002531"}}}


id: PR:Q10138
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- csr102 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRAL-TRIO domain-containing protein C3H8.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H8.02","synonyms":[{"name":"Spom972h-csr102","type":"exact"}],"termid":"PR:Q10138"}


id: GO:0045636
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id: GO:1901224
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id: GO:0008121
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id: MONDO:0013402
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id: PR:O74857
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id: MONDO:0021281
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id: GO:1901209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of heart looping.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heart looping","termid":"GO:1901207"},{"relation_name":"is_a","term_name":"positive regulation of morphogenesis of an epithelium","termid":"GO:1905332"},{"relation_name":"positively_regulates","term_name":"heart looping","termid":"GO:0001947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of heart looping","synonyms":[{"name":"activation of cardiac looping","type":"exact"},{"name":"activation of heart looping","type":"narrow"},{"name":"positive regulation of cardiac looping","type":"exact"},{"name":"up regulation of cardiac looping","type":"exact"},{"name":"up regulation of heart looping","type":"exact"},{"name":"up-regulation of cardiac looping","type":"exact"},{"name":"up-regulation of heart looping","type":"exact"},{"name":"upregulation of cardiac looping","type":"exact"},{"name":"upregulation of heart looping","type":"exact"}],"termid":"GO:1901209"}


id: PR:O13859
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug125 gene.","definition_xrefs":["UniProtKB:O13859","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 125 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1A6.08c","synonyms":[{"name":"Spom972h-mug125","type":"exact"}],"termid":"PR:O13859"}


id: MONDO:0020218
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete goniodysgenesis (obsolete MONDO:0020218)","secondary_identifiers":["Orphanet:98633","SCTID:251730004"],"termid":"MONDO:0020218","xrefs":{"Monarch":{"xref_id":"0020218"}}}


id: GO:0032225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"},{"relation_name":"regulates","term_name":"synaptic transmission, dopaminergic","termid":"GO:0001963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of synaptic transmission, dopaminergic","termid":"GO:0032225"}


id: PBO:0070009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1306, pseudogene","termid":"PBO:0070009"}


id: GO:1905407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of creatine transmembrane transporter activity.","definition_xrefs":["GOC:bc","GOC:PARL","PMID:25531585","GO_REF:0000059","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of creatine transmembrane transporter activity (obsolete GO:1905407)","termid":"GO:1905407"}


id: GO:1900792
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of shamixanthone.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"shamixanthone metabolic process","termid":"GO:1900791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"shamixanthone catabolic process","synonyms":[{"name":"shamixanthone breakdown","type":"exact"},{"name":"shamixanthone catabolism","type":"exact"},{"name":"shamixanthone degradation","type":"exact"}],"termid":"GO:1900792"}


id: PBO:0081405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF252P antisense RNA 1","termid":"PBO:0081405"}


id: GO:0097351
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a toxin to prevent it from interacting with other partners or to inhibit its localization to the area of the cell or complex where it is active.","definition_xrefs":["GOC:rs","PMID:24806488","PMID:19325885","PMID:19143615","Wikipedia:Toxin-antitoxin_system#Type_II","PMID:21819231","PMID:22545240"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular sequestering activity","termid":"GO:0140313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140313"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140313","GO:0003674"],"is_obsolete":false,"name":"toxin sequestering activity","synonyms":[{"name":"toxin-antitoxin pair type I binding","type":"narrow"},{"name":"toxin-antitoxin pair type II binding","type":"narrow"}],"termid":"GO:0097351"}


id: MONDO:0850421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute pancreatits that is characterized by acute inflammation of the pancreas in which the initial edematous pancreatitis evolved into necrosis accompanied by hemorrhage.","definition_xrefs":["DOID:0080999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute pancreatitis","termid":"MONDO:0006515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"acute hemorrhagic pancreatitis","secondary_identifiers":["UMLS:C0267940","MEDGEN:541079"],"termid":"MONDO:0850421","xrefs":{"Monarch":{"xref_id":"0850421"}}}


id: PBO:0052982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ladinin 1","termid":"PBO:0052982"}


id: GO:0035980
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The growth of colonies in filamentous chains of cells as a result of a reduced availability of nitrogen.","definition_xrefs":["GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete invasive growth in response to nitrogen limitation (obsolete GO:0035980)","synonyms":[{"name":"invasive growth in response to nitrogen limitation","type":"exact"}],"termid":"GO:0035980"}


id: MONDO:0010346
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MRX52 (obsolete MONDO:0010346)","secondary_identifiers":["OMIM:300504"],"termid":"MONDO:0010346","xrefs":{"Monarch":{"xref_id":"0010346"}}}


id: PBO:0070330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 2","termid":"PBO:0070330"}


id: PBO:0075401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm autoantigenic protein 17","termid":"PBO:0075401"}


id: PBO:0055985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat transmembrane neuronal 3","termid":"PBO:0055985"}


id: MOD:00951
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Covalent modification of a peptide or protein L-glutamic acid residue to gamma-carboxyglutamic acid with secondary loss of a neutral carbon dioxide molecular fragment.","definition_xrefs":["DeltaMass:58"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamic acid residue","termid":"MOD:00015"},{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"},{"relation_name":"is_a","term_name":"modified residue with neutral loss of carbon dioxide","termid":"MOD:00957"},{"relation_name":"is_a","term_name":"decarboxylated residue","termid":"MOD:00960"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-gamma-carboxyglutamic acid with neutral loss of carbon dioxide","synonyms":[{"name":"d4CbxGlu","type":"exact"}],"termid":"MOD:00951"}


id: MONDO:0022512
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete atrial septal defect coronary sinus (obsolete MONDO:0022512)","termid":"MONDO:0022512","xrefs":{"Monarch":{"xref_id":"0022512"}}}


id: PBO:0053321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 106","termid":"PBO:0053321"}


id: PBO:0072304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S25 pseudogene 1","termid":"PBO:0072304"}


id: PBO:0028434
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_superoxide_dismutase_activity","termid":"PBO:0028434"}


id: PBO:0017695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation release factor","termid":"PBO:0017695"}


id: PBO:0028919
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_transcription","termid":"PBO:0028919"}


id: PBO:0078222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 10-3","termid":"PBO:0078222"}


id: GO:0061678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular carbohydrate catabolic process that converts a carbohydrate to pyruvate and either glyceraldehyde or glyceraldehyde-3 phosphate by dehydration and aldol cleavage via a gluconate or 6-phosphogluconate intermediate.","definition_xrefs":["GOC:dph","PMID:12921536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate metabolic process","termid":"GO:0006090"},{"relation_name":"is_a","term_name":"carbohydrate catabolic process","termid":"GO:0016052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"Entner-Doudoroff pathway","secondary_identifiers":["MetaCyc:Entner-Doudoroff-Pathways"],"termid":"GO:0061678"}


id: PBO:0090777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear membrane organization protein Apq12","termid":"PBO:0090777"}


id: GO:0141091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular ligand binding to a member of the transforming growth factor receptor superfamily, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:28096268","PMID:22651914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein serine/threonine kinase signaling pathway","termid":"GO:0007178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"transforming growth factor beta receptor superfamily signaling pathway","synonyms":[{"name":"TGF-beta receptor superfamily signaling pathway","type":"exact"},{"name":"TGF-beta receptor superfamily signalling pathway","type":"exact"},{"name":"TGFbeta receptor superfamily signaling pathway","type":"exact"},{"name":"TGFbeta receptor superfamily signalling pathway","type":"exact"},{"name":"transforming growth factor beta receptor superfamily signalling pathway","type":"exact"}],"termid":"GO:0141091"}


id: MONDO:0020619
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood group, langereis system (obsolete MONDO:0020619)","secondary_identifiers":["OMIM:111600"],"synonyms":[{"name":"BLOOD GROUP, LANGEREIS SYSTEM","type":"related"},{"name":"LAN","type":"related"},{"name":"blood group, Langereis system","type":"exact"}],"termid":"MONDO:0020619","xrefs":{"Monarch":{"xref_id":"0020619"}}}


id: MONDO:0017657
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare paroxysmal movement disorder (obsolete MONDO:0017657)","secondary_identifiers":["Orphanet:306768"],"termid":"MONDO:0017657","xrefs":{"Monarch":{"xref_id":"0017657"}}}


id: CHEBI:29103
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium(1+)","termid":"CHEBI:29103"}


id: PBO:0090131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type ATPase V0 subunit c' (proteolipid subunit)","termid":"PBO:0090131"}


id: GO:0070961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the directed killing of a symbiont target cell by a neutrophil.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to biotic stimulus","termid":"GO:0002833"},{"relation_name":"is_a","term_name":"positive regulation of defense response","termid":"GO:0031349"},{"relation_name":"is_a","term_name":"positive regulation of response to external stimulus","termid":"GO:0032103"},{"relation_name":"is_a","term_name":"positive regulation of killing of cells of another organism","termid":"GO:0051712"},{"relation_name":"is_a","term_name":"regulation of neutrophil mediated killing of symbiont cell","termid":"GO:0070949"},{"relation_name":"is_a","term_name":"positive regulation of neutrophil mediated cytotoxicity","termid":"GO:0070960"},{"relation_name":"positively_regulates","term_name":"neutrophil-mediated killing of symbiont cell","termid":"GO:0070943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neutrophil mediated killing of symbiont cell","synonyms":[{"name":"activation of neutrophil mediated killing of symbiont cell","type":"narrow"},{"name":"stimulation of neutrophil mediated killing of symbiont cell","type":"narrow"},{"name":"up regulation of neutrophil mediated killing of symbiont cell","type":"exact"},{"name":"up-regulation of neutrophil mediated killing of symbiont cell","type":"exact"},{"name":"upregulation of neutrophil mediated killing of symbiont cell","type":"exact"}],"termid":"GO:0070961"}


id: PBO:0048997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPC5 intronic transcript 1","termid":"PBO:0048997"}


id: PBO:0067296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 381, pseudogene","termid":"PBO:0067296"}


id: GO:0061616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The glycolytic process through fructose-6-phosphate in which fructose is catabolized into pyruvate.","definition_xrefs":["ISBN:0201090910","ISBN:0879010479","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fructose catabolic process","termid":"GO:0006001"},{"relation_name":"is_a","term_name":"glycolytic process through fructose-6-phosphate","termid":"GO:0061615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281","GO:0005975","GO:0006091"],"is_obsolete":false,"name":"glycolytic process from fructose through fructose-6-phosphate","synonyms":[{"name":"glycolysis from fructose through fructose-6-phosphate","type":"exact"}],"termid":"GO:0061616"}


id: GO:0097102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process involved in the specification of identity of an endothelial tip cell. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. An endothelial tip cell is a specialized endothelial cell localized to the leading edge of an angiogenic sprout that senses extracellular signals and guides the directed growth of blood vessels.","definition_xrefs":["PMID:21521739","CL:0000704","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blood vessel endothelial cell fate specification","termid":"GO:0097101"},{"relation_name":"part_of","term_name":"sprouting angiogenesis","termid":"GO:0002040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endothelial tip cell fate specification","synonyms":[{"name":"angiogenic tip cell fate specification","type":"exact"}],"termid":"GO:0097102"}


id: SO:0000428
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The U5 segment of the three-prime long terminal repeat.","direct_ancestors":[{"relation_name":"is_a","term_name":"U5_LTR_region","termid":"SO:0000422"},{"relation_name":"is_a","term_name":"five_prime_LTR_component","termid":"SO:0000850"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5_five_prime_LTR_region","synonyms":[{"name":"U5 5' long terminal repeat region","type":"exact"},{"name":"U5 five prime LTR region","type":"exact"}],"termid":"SO:0000428"}


id: GO:0035020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of Rac protein signal transduction.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of small GTPase mediated signal transduction","termid":"GO:0051056"},{"relation_name":"regulates","term_name":"Rac protein signal transduction","termid":"GO:0016601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of Rac protein signal transduction","termid":"GO:0035020"}


id: GO:2001063
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to glucomannan.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heteropolysaccharide binding","termid":"GO:0010297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"glucomannan binding","termid":"GO:2001063"}


id: PBO:0030996
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cytoplasmic_protein_level_during_vegetative_growth","termid":"PBO:0030996"}


id: GO:0061554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to ganglion. This process pertains to the initial formation of a structure from unspecified parts.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"ganglion morphogenesis","termid":"GO:0061552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ganglion formation","synonyms":[{"name":"ganglia formation","type":"related"}],"termid":"GO:0061554"}


id: PBO:0048878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family member D","termid":"PBO:0048878"}


id: GO:0060702
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of the catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nuclease activity","termid":"GO:0032074"},{"relation_name":"is_a","term_name":"regulation of endoribonuclease activity","termid":"GO:0060699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of endoribonuclease activity","termid":"GO:0060702"}


id: PBO:0057243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 448","termid":"PBO:0057243"}


id: GO:0009026
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-altronate + NAD+ = D-tagaturonate + H+ + NADH.","definition_xrefs":["RHEA:17813","EC:1.1.1.58"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"tagaturonate reductase activity","secondary_identifiers":["KEGG_REACTION:R02555","MetaCyc:ALTRO-OXIDOREDUCT-RXN"],"synonyms":[{"name":"D-altronate:NAD+ 3-oxidoreductase activity","type":"related"},{"name":"D-tagaturonate reductase activity","type":"related"},{"name":"TagUAR","type":"related"},{"name":"altronate dehydrogenase activity","type":"related"},{"name":"altronate oxidoreductase activity","type":"related"},{"name":"altronic oxidoreductase activity","type":"related"},{"name":"tagaturonate dehydrogenase activity","type":"related"}],"termid":"GO:0009026"}


id: PBO:0005418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-DBF type","termid":"PBO:0005418"}


id: GO:0018253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a protein active site cross-link from the alpha-carboxyl carbon of residue n, an alanine, serine or cysteine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with an oxidation of residue n+1 to form an active aldehyde.","definition_xrefs":["RESID:AA0184","RESID:AA0187","RESID:AA0188"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via 5-imidazolinone glycine (obsolete GO:0018253)","synonyms":[{"name":"biosynthesis of protein-protein cross-link via 5-imidazolinone glycine","type":"exact"},{"name":"biosynthetic process of protein-protein cross-link via 5-imidazolinone glycine","type":"exact"}],"termid":"GO:0018253"}


id: FYPO:0002532
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleoplasm begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to nucleoplasm","termid":"FYPO:0002529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of protein localization to nucleoplasm","synonyms":[{"name":"delayed onset of protein localisation to nucleoplasm","type":"exact"},{"name":"delayed onset of protein localization to nucleoplasm during mitotic cell cycle","type":"related"},{"name":"delayed onset of protein localization to nucleoplasm during vegetative growth","type":"exact"},{"name":"delayed protein localization to nucleoplasm","type":"exact"}],"termid":"FYPO:0002532"}


id: MONDO:1012787
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any neuroaxonal dystrophy that occurs in dogs due to a mutation in the PLA2G6 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"neuroaxonal dystrophy, dog","termid":"MONDO:1011561"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroaxonal dystrophy, PLA2G6-related, dog","secondary_identifiers":["OMIA:002105-9615"],"termid":"MONDO:1012787","xrefs":{"Monarch":{"xref_id":"1012787"}}}


id: GO:0002377
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of immunoglobulin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"production of molecular mediator of immune response","termid":"GO:0002440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"immunoglobulin production","secondary_identifiers":["GO:0002378","GO:0048305"],"synonyms":[{"name":"antibody production","type":"exact"},{"name":"immunoglobulin biosynthetic process","type":"narrow"},{"name":"immunoglobulin secretion","type":"narrow"}],"termid":"GO:0002377"}


id: MONDO:0012962
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any microvascular complications of diabetes, susceptibility in which the cause of the disease is a mutation in the EPO gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microvascular complications of diabetes, susceptibility","termid":"MONDO:0000065"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microvascular complications of diabetes, susceptibility to, 2","secondary_identifiers":["UMLS:C2675471","OMIM:612623","MEDGEN:436442"],"synonyms":[{"name":"EPO microvascular complications of diabetes, susceptibility","type":"exact"},{"name":"MVCD2","type":"related"},{"name":"end-stage renal disease, diabetic, susceptibility to","type":"related"},{"name":"microvascular complications of diabetes 2","type":"exact"},{"name":"microvascular complications of diabetes, susceptibility caused by mutation in EPO","type":"exact"},{"name":"microvascular complications of diabetes, susceptibility to, 2","type":"exact"},{"name":"microvascular complications of diabetes, susceptibility to, type 2","type":"exact"},{"name":"proliferative retinopathy, diabetic, susceptibility to","type":"related"}],"termid":"MONDO:0012962","xrefs":{"Monarch":{"xref_id":"0012962"}}}


id: GO:1990875
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side of the nuclear pore complex (NPC) that faces the nucleoplasm.","definition_xrefs":["PMID:8422679"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nuclear pore","termid":"GO:0005643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005643"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005643","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"nucleoplasmic side of nuclear pore","synonyms":[{"name":"nucleoplasmic side of NPC","type":"exact"},{"name":"nucleoplasmic side of nuclear pore complex","type":"exact"},{"name":"nucleoplasmic side of nucleopore","type":"exact"}],"termid":"GO:1990875"}


id: PBO:0003620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal ubiquitin-protein ligase E3 (predicted)","termid":"PBO:0003620"}


id: FYPO:0006800
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of centromeres and associated kinetochores into a cluster at the nuclear periphery is decreased during interphase of the mitotic cell cycle. Centromere-kinetochore complexes normally cluster near the old spindle pole body during mitotic interphase.","definition_xrefs":["PomBase:mah","PMID:29180432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal centromere clustering at nuclear periphery","termid":"FYPO:0001779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased centromere clustering at nuclear periphery during mitotic interphase","synonyms":[{"name":"centromere declustering during mitotic interphase","type":"exact"},{"name":"decreased centromere clustering at SPB during mitotic interphase","type":"related"},{"name":"decreased centromere clustering at nuclear periphery during interphase during vegetative growth","type":"exact"},{"name":"decreased centromere clustering at nuclear periphery during interphase of mitotic cell cycle","type":"related"},{"name":"decreased centromere clustering at spindle pole body during mitotic interphase","type":"related"},{"name":"decreased centromere-SPB clustering during mitotic interphase","type":"related"},{"name":"decreased inter-centromere connection during mitotic interphase","type":"exact"},{"name":"decreased kinetochore clustering at SPB during mitotic interphase","type":"related"},{"name":"decreased kinetochore clustering at old mitotic spindle pole body during mitotic interphase","type":"related"},{"name":"decreased kinetochore clustering at spindle pole body during mitotic interphase","type":"related"},{"name":"decreased kinetochore localization at spindle pole body during mitotic interphase","type":"related"},{"name":"decreased mitotic centromere clustering at nuclear periphery during mitotic interphase","type":"exact"}],"termid":"FYPO:0006800"}


id: MONDO:0011224
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Monomelic amyotrophy (MA) is a rare benign lower motor neuron disorder characterized by muscular weakness and wasting in the distal upper extremities during adolescence followed by a spontaneous halt in progression and a stabilization of symptoms.","definition_xrefs":["Orphanet:65684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acquired motor neuron disease","termid":"MONDO:0020129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"monomelic amyotrophy","secondary_identifiers":["MESH:C538253","MEDGEN:356265","GARD:9697","UMLS:C1865384","icd11.foundation:2090347823","OMIM:602440","MedDRA:10069681","EFO:1001989"],"synonyms":[{"name":"Hirayama disease","type":"exact"},{"name":"JMADUE","type":"exact"},{"name":"amyotrophy, monomelic","type":"related"},{"name":"benign focal amyotrophy","type":"exact"},{"name":"juvenile muscular atrophy of distal upper extremity","type":"exact"},{"name":"juvenile muscular atrophy of the distal upper limb","type":"exact"},{"name":"spinal muscular atrophy juvenile nonprogressive","type":"related"},{"name":"spinal muscular atrophy, juvenile, nonprogressive","type":"related"}],"termid":"MONDO:0011224","xrefs":{"Monarch":{"xref_id":"0011224"}}}


id: PBO:0076381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tachykinin precursor 3","termid":"PBO:0076381"}


id: GO:0085020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 6 of the ubiquitin monomers, is added to a protein. K6-linked ubiquitination is involved in DNA repair.","definition_xrefs":["GOC:sp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein polyubiquitination","termid":"GO:0000209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"protein K6-linked ubiquitination","synonyms":[{"name":"protein K6-linked polyubiquitination","type":"exact"}],"termid":"GO:0085020"}


id: MONDO:0018584
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete placental insufficiency (obsolete MONDO:0018584)","termid":"MONDO:0018584","xrefs":{"Monarch":{"xref_id":"0018584"}}}


id: GO:0032293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a non-myelinating glial cell membrane encircles an axon in the central nervous system.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-myelinated axon ensheathment","termid":"GO:0032285"},{"relation_name":"is_a","term_name":"axon ensheathment in central nervous system","termid":"GO:0032291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"non-myelinated axon ensheathment in central nervous system","synonyms":[{"name":"ensheathment of non-myelinated axons in central nervous system","type":"exact"}],"termid":"GO:0032293"}


id: GO:0007569
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An aging process that has as participant a cell after a cell has stopped dividing. Cell aging may occur when a cell has temporarily stopped dividing through cell cycle arrest (GO:0007050) or when a cell has permanently stopped dividing, in which case it is undergoing cellular senescence (GO:0090398). May precede cell death (GO:0008219) and succeed cell maturation (GO:0048469).","definition_xrefs":["GOC:PO_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cell aging (obsolete GO:0007569)","synonyms":[{"name":"cell ageing","type":"exact"}],"termid":"GO:0007569"}


id: PBO:0067485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 619, pseudogene","termid":"PBO:0067485"}


id: PBO:0057642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1233-2","termid":"PBO:0057642"}


id: PBO:0071988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 17","termid":"PBO:0071988"}


id: GO:0099025
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of postsynaptic membrane (obsolete GO:0099025)","termid":"GO:0099025"}


id: PBO:0049735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemoglobin subunit alpha 1","termid":"PBO:0049735"}


id: SO:0001597
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A secondary structure variant that compensate for the change made by a previous variant.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_secondary_structure_variant","termid":"SO:0001596"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"compensatory_transcript_secondary_structure_variant","synonyms":[{"name":"compensatory transcript secondary structure variant","type":"exact"}],"termid":"SO:0001597"}


id: PBO:0068624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 4, pseudogene","termid":"PBO:0068624"}


id: PBO:0000114
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.29","termid":"PBO:0000114"}


id: GO:0098543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a stimulus from another organism is received and converted into a molecular signal.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to other organism","termid":"GO:0051707"},{"relation_name":"is_a","term_name":"detection of external biotic stimulus","termid":"GO:0098581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of other organism","secondary_identifiers":["GO:0051824"],"synonyms":[{"name":"recognition of other organism during symbiotic interaction","type":"narrow"},{"name":"recognition of other organism involved in symbiotic interaction","type":"narrow"}],"termid":"GO:0098543"}


id: PBO:0036440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1 ubiquitin ligase complex (derlin) Der1 (predicted)","termid":"PBO:0036440"}


id: PBO:0078112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 1-2","termid":"PBO:0078112"}


id: MONDO:1012908
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spontaneous systemic inflammation signs and increased delayed hypersensitivity response that occurs in pigs due to a mutation in the NLRP3 gene created by genetic engineering or gene editing.","definition_xrefs":["PMID:34580110"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder, non-human animal","termid":"MONDO:0700106"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryopyrin-associated periodic syndrome, NLRP3-related, pig","secondary_identifiers":["OMIA:002464-9823"],"termid":"MONDO:1012908","xrefs":{"Monarch":{"xref_id":"1012908"}}}


id: GO:0032182
data:
  {"annotated_genes":["SJAG_01051","SJAG_03250","SJAG_00907","SJAG_02116","SJAG_04024","SJAG_00521","SJAG_00439","SJAG_04379","SJAG_00033","SJAG_02912","SJAG_03756","SJAG_02021","SJAG_01585","SJAG_00941","SJAG_02451","SJAG_02833","SJAG_03189","SJAG_01936","SJAG_01134","SJAG_01467","SJAG_00312","SJAG_00821","SJAG_00805"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73886],"is_not":false,"summary":null,"term":"GO:0032182"},{"annotations":[73125,62701,71910,77464,61043,60336,71116,76522,77102,73793,72061,78854,66910,68096,79671,61540,58231,75404,78294,78243,65760,72823],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043130"}]},"cv_name":"molecular_function","definition":"Binding to a small conjugating protein such as ubiquitin or a ubiquitin-like protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00033":null,"SJAG_00312":null,"SJAG_00439":null,"SJAG_00521":null,"SJAG_00805":null,"SJAG_00821":null,"SJAG_00907":null,"SJAG_00941":null,"SJAG_01051":null,"SJAG_01134":null,"SJAG_01467":null,"SJAG_01585":null,"SJAG_01936":null,"SJAG_02021":null,"SJAG_02116":null,"SJAG_02451":null,"SJAG_02833":null,"SJAG_02912":null,"SJAG_03189":null,"SJAG_03250":null,"SJAG_03756":null,"SJAG_04024":null,"SJAG_04379":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"ubiquitin-like protein binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"synonyms":[{"name":"small conjugating protein binding","type":"exact"}],"termid":"GO:0032182","terms_by_termid":{"GO:0032182":null,"GO:0043130":null}}


id: FYPO:0006406
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the spindle pole body is abnormal during the meiotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle pole body morphology","termid":"FYPO:0004607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal spindle pole body morphology during meiotic cell cycle","synonyms":[{"name":"abnormal SPB morphology during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0006406"}


id: MONDO:0015402
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mandibular arteriovenous malformation is a rare vascular anomaly characterized by an abnormal connection of the arterial and venous vasculature, without capillary connections, in the mandibular area, commonly presenting with minor gingival bleeding, dental loosening, lower lip numbness, facial deformity and malocclusion. This usually high-flow vascular malformation may also present with potentially life-threatening, spontaneous, or tooth extraction-induced, hemorrhagic shock.","definition_xrefs":["Orphanet:141174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"facial arteriovenous malformation","termid":"MONDO:0015500"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mandibular arteriovenous malformation","secondary_identifiers":["GARD:19957","icd11.foundation:113998538","MEDGEN:825297","SCTID:703334000","UMLS:C3839452"],"synonyms":[{"name":"arteriovenous malformation of mandible","type":"exact"}],"termid":"MONDO:0015402","xrefs":{"Monarch":{"xref_id":"0015402"}}}


id: GO:0035728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hepatocyte growth factor stimulus.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to growth factor","termid":"GO:0070848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to hepatocyte growth factor","synonyms":[{"name":"response to HGF stimulus","type":"exact"},{"name":"response to hepatocyte growth factor stimulus","type":"exact"}],"termid":"GO:0035728"}


id: PBO:0047649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase 4 pseudogene 2","termid":"PBO:0047649"}


id: PBO:0073474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sarcoglycan epsilon","termid":"PBO:0073474"}


id: MONDO:1011188
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Scoliosis that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"scoliosis, non-human animal","termid":"MONDO:1010302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scoliosis, horse","secondary_identifiers":["OMIA:000891-9796"],"termid":"MONDO:1011188","xrefs":{"Monarch":{"xref_id":"1011188"}}}


id: PBO:0063646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 1 pseudogene 3","termid":"PBO:0063646"}


id: FYPO:0005421
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell morphology phenotype in which a vegetative cell is inviable and elongated, and progression through the mitotic cell cycle is arrested in interphase, during a cellular response to ultraviolet light. The cell contains no septum.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable elongated vegetative cell with mitotic cell cycle arrest in interphase during cellular response to UV (obsolete FYPO:0005421)","synonyms":[{"name":"elongated inviable cell with mitotic cell cycle arrest in interphase during cellular response to UV during vegetative growth","type":"exact"},{"name":"elongated inviable vegetative cell with mitotic cell cycle arrest in interphase during cellular response to UV","type":"exact"},{"name":"inviable elongated mononucleate aseptate vegetative cell with mitotic cell cycle arrest in interphase during cellular response to UV","type":"exact"},{"name":"inviable elongated vegetative cell with cell cycle arrest in interphase during cellular response to UV during mitotic cell cycle","type":"related"},{"name":"lethal; elongated vegetative cell with mitotic cell cycle arrest in interphase during cellular response to UV","type":"exact"},{"name":"mitotic interphase arrested elongated inviable vegetative cell during cellular response to UV","type":"exact"}],"termid":"FYPO:0005421"}


id: MONDO:0003318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Wilms tumor of the kidney characterized by the presence of blastema, epithelial, and mesenchymal components (triphasic pattern) or a combination of two of them (biphasic pattern).","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"Wilms tumor 1","termid":"MONDO:0008679"},{"relation_name":"is_a","term_name":"kidney Wilms tumor","termid":"MONDO:0019004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0004992"],"is_obsolete":false,"name":"mixed cell type kidney Wilms' tumor","secondary_identifiers":["DOID:5179","MEDGEN:76001","NCIT:C9149","UMLS:C0279611"],"synonyms":[{"name":"Mixed cell type Wilms tumor","type":"exact"},{"name":"Mixed cell type Wilms tumour","type":"exact"},{"name":"mixed cell type kidney Wilms tumor","type":"exact"},{"name":"mixed cell type kidney Wilms tumour","type":"exact"},{"name":"mixed cell type kidney adenosarcoma","type":"exact"},{"name":"mixed cell type nephroblastoma","type":"exact"},{"name":"mixed cell type renal Wilm's tumor","type":"exact"},{"name":"mixed cell type renal Wilm's tumour","type":"exact"},{"name":"mixed cell type renal Wilms tumor","type":"exact"},{"name":"mixed cell type renal Wilms tumour","type":"exact"},{"name":"mixed cell type renal Wilms' tumor","type":"exact"},{"name":"mixed cell type renal Wilms' tumour","type":"exact"},{"name":"mixed cell type renal adenosarcoma","type":"exact"}],"termid":"MONDO:0003318","xrefs":{"Monarch":{"xref_id":"0003318"}}}


id: PBO:0065410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit alpha 7 pseudogene 1","termid":"PBO:0065410"}


id: PBO:0113472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC2, a regulator of plasma membrane (PM) homeostasis; TORC2 also regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; interacts with Slm1p and Slm2p, homologous PH domain-containing TORC2 substrates; BIT2 has a paralog, BIT61, that arose from the whole genome duplication","termid":"PBO:0113472"}


id: MONDO:0011253
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Craniomicromelic syndrome is a very rare disorder characterized by intrauterine growth retardation, underossification of the skull with large fontanels, short limbs with absent phalanges and finger and toe syndactyly.","definition_xrefs":["Orphanet:1524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic craniosynostosis","termid":"MONDO:0015338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"craniomicromelic syndrome","secondary_identifiers":["icd11.foundation:1734157428","GARD:1583","MESH:C566522","SCTID:725098001","MEDGEN:355396","UMLS:C1865184","OMIM:602558"],"synonyms":[{"name":"craniomicromelic syndrome","type":"exact"}],"termid":"MONDO:0011253","xrefs":{"Monarch":{"xref_id":"0011253"}}}


id: PBO:0083295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; open reading frame overlaps the verified gene PNO1/YOR145C","termid":"PBO:0083295"}


id: MONDO:0011358
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"blue nevi, familial multiple","secondary_identifiers":["MESH:C566346","UMLS:C1863617","MEDGEN:400340","OMIM:603670"],"synonyms":[{"name":"blue nevi, familial multiple","type":"exact"}],"termid":"MONDO:0011358","xrefs":{"Monarch":{"xref_id":"0011358"}}}


id: GO:0051754
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  {"annotated_genes":["SJAG_04699","SJAG_00229","SJAG_04126","SJAG_03989","SJAG_01805","SJAG_03681","SJAG_03418","SJAG_01601","SJAG_00600","SJAG_04259","SJAG_03926","SJAG_01082"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70248,90716],"is_not":false,"summary":null,"term":"GO:0051754"},{"annotations":[113572,101073,101593,114289,115694,113018,98926,107618,93594,104293],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990813"}]},"cv_name":"biological_process","definition":"The cell cycle process in which centromeres of sister chromatids are joined during meiosis.","definition_xrefs":["PMID:14730319","PMID:16325576"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic sister chromatid cohesion","termid":"GO:0051177"},{"relation_name":"is_a","term_name":"centromeric sister chromatid cohesion","termid":"GO:0070601"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00229":null,"SJAG_00600":null,"SJAG_01082":null,"SJAG_01601":null,"SJAG_01805":null,"SJAG_03418":null,"SJAG_03681":null,"SJAG_03926":null,"SJAG_03989":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"meiotic sister chromatid cohesion, centromeric","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"centromeric meiotic sister chromatin cohesion","type":"exact"},{"name":"meiotic sister chromatid cohesion at centromere","type":"exact"},{"name":"sister chromatid cohesion at centromere at meiosis I","type":"exact"}],"termid":"GO:0051754","terms_by_termid":{"GO:0051754":null,"GO:1990813":null}}


id: GO:1902791
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of undecan-2-one.","definition_xrefs":["GOC:TermGenie","GO_REF:0000068","GOC:mengo_curators","PMID:4950559"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"undecan-2-one metabolic process","termid":"GO:1902790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"undecan-2-one biosynthetic process","synonyms":[{"name":"undecan-2-one anabolism","type":"exact"},{"name":"undecan-2-one biosynthesis","type":"exact"},{"name":"undecan-2-one formation","type":"exact"},{"name":"undecan-2-one synthesis","type":"exact"}],"termid":"GO:1902791"}


id: PBO:0071730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 28","termid":"PBO:0071730"}


id: RO:0002345
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  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"transports","termid":"RO:0002020"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exports","termid":"RO:0002345"}


id: PBO:0030905
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_vegetative_growth","termid":"PBO:0030905"}


id: GO:1905774
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of ATP-dependent DNA helicase activity.","definition_xrefs":["PMID:13679365","GOC:TermGenie","PMID:19734539","GOC:rb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of DNA helicase activity (obsolete GO:1905774)","synonyms":[{"name":"regulation of ATP-dependent DNA helicase activity","type":"exact"}],"termid":"GO:1905774"}


id: PBO:0059901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 24","termid":"PBO:0059901"}


id: PBO:0066806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 105","termid":"PBO:0066806"}


id: PBO:0038630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP citrate lyase","termid":"PBO:0038630"}


id: PBO:0005682
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.2.3.5","termid":"PBO:0005682"}


id: MONDO:0011139
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"diabetic embryopathy","termid":"MONDO:0016018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"preaxial hallucal polydactyly","secondary_identifiers":["OMIM:601759","MESH:C566632","UMLS:C1866339","MEDGEN:356507"],"synonyms":[{"name":"preaxial hallucal polydactyly","type":"exact"}],"termid":"MONDO:0011139","xrefs":{"Monarch":{"xref_id":"0011139"}}}


id: MONDO:0012691
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Noonan syndrome with multiple lentigines in which the cause of the disease is a mutation in the RAF1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Noonan syndrome with multiple lentigines","termid":"MONDO:0007893"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0000426"],"is_obsolete":false,"name":"LEOPARD syndrome 2","secondary_identifiers":["MEDGEN:370588","GARD:15518","OMIM:611554","MESH:C537117","UMLS:C1969056","DOID:0080549"],"synonyms":[{"name":"LEOPARD syndrome 2","type":"exact"},{"name":"LPRD2","type":"related"},{"name":"Leopard syndrome type 2","type":"exact"},{"name":"leopard syndrome 2","type":"exact"}],"termid":"MONDO:0012691","xrefs":{"Monarch":{"xref_id":"0012691"}}}


id: PBO:0080614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 48","termid":"PBO:0080614"}


id: GO:0006396
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id: PBO:0048885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family like 4","termid":"PBO:0048885"}


id: PBO:0061687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 155","termid":"PBO:0061687"}


id: PBO:0091653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosyl hydrolase family 3","termid":"PBO:0091653"}


id: GO:0002011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of an epithelial sheet are generated and organized. An epithelial sheet is a flat surface consisting of closely packed epithelial cells.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"morphogenesis of an epithelial sheet","termid":"GO:0002011"}


id: PBO:0029953
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_secretion","termid":"PBO:0029953"}


id: GO:0106018
data:
  {"annotated_genes":["SJAG_04545","SJAG_02289","SJAG_00063"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73602,73502,74792],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043813"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate + H2O = 1-phosphatidyl-1D-myo-inositol phosphate + phosphate.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol bisphosphate phosphatase activity","termid":"GO:0034593"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00063":null,"SJAG_02289":null,"SJAG_04545":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"phosphatidylinositol-3,5-bisphosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0106018","terms_by_termid":{"GO:0043813":null}}


id: PBO:0091714
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"was previously incorrectly named as mtx2","termid":"PBO:0091714"}


