# terms

id: GO:0021968
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the migration of an axon growth cone of a pyramidal cell that is part of the corticospinal tract is directed after exiting the cerebral cortex through the internal capsule in response to a combination of attractive and repulsive cues.","definition_xrefs":["GOC:jid","PMID:9878731","GOC:dph","GO_REF:0000021","GOC:dgh","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axon guidance","termid":"GO:0007411"},{"relation_name":"part_of","term_name":"corticospinal neuron axon guidance","termid":"GO:0021966"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"corticospinal neuron axon guidance through the internal capsule","synonyms":[{"name":"corticospinal neuron axon pathfinding through the internal capsule","type":"exact"}],"termid":"GO:0021968"}


id: PBO:0012836
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complented by H. sapiens KRAS","termid":"PBO:0012836"}


id: SO:1001277
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The recoding stimulatory signal located downstream of the recoding site.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recoding_stimulatory_region","termid":"SO:1001268"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_recoding_site","synonyms":[{"name":"three prime recoding site","type":"exact"}],"termid":"SO:1001277"}


id: PR:O60164
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pescadillo that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12221:SF6","PRO:DNx","OMA:SCHPO03820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pescadillo homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19F5.05c","secondary_identifiers":["UniProtKB:O60164"],"synonyms":[{"name":"Spom972h-PES1","type":"exact"},{"name":"nucleolar protein 7 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60164"}


id: PBO:0029562
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_1,3-beta-D-glucan_synthase_activity","termid":"PBO:0029562"}


id: PBO:0083137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dual-specificity ser/thr and tyrosine protein kinase; roles in chromosome segregation, meiotic entry, genome stability, phosphorylation-dependent protein degradation (Rcn1p and Cdc6p), inhibition of protein kinase A, transcriptional regulation, inhibition of RNA pol III, calcium stress and inhibition of Clb2p-Cdc28p after nuclear division; MCK1 has a paralog, YGK3, that arose from the whole genome duplication","termid":"PBO:0083137"}


id: MOD:00046
data:
  {"annotated_genes":["SJAG_02763","SJAG_03012","SJAG_02592"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[80555,80556,119044,119045,119046,119047,119355,119356],"is_not":false,"summary":null,"term":"MOD:00046"}]},"cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-phospho-L-serine.","definition_xrefs":["PubMed:8061611","OMSSA:6","PubMed:12923550","RESID:AA0037","DeltaMass:0","Unimod:21#S","PubMed:4065410","ChEBI:15811"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 166.98-167.00 Da","termid":"MOD:00771"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"},{"relation_name":"is_a","term_name":"O-phosphorylated residue","termid":"MOD:01455"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02592":null,"SJAG_02763":null,"SJAG_03012":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00696"}],"interesting_parent_ids":["MOD:00696"],"is_obsolete":false,"name":"O-phospho-L-serine","references_by_uniquename":{"PMID:26774782":null,"PMID:31150379":null,"PMID:36408920":null},"synonyms":[{"name":"(2S)-2-amino-3-(phosphonooxy)propanoic acid","type":"exact"},{"name":"2-amino-3-hydroxypropanoic acid 3-phosphate","type":"exact"},{"name":"2-azanyl-3-(phosphonooxy)propanoic acid","type":"exact"},{"name":"ACT_SITE Phosphoserine intermediate","type":"exact"},{"name":"MOD_RES Phosphoserine","type":"exact"},{"name":"O-phospho-L-serine","type":"exact"},{"name":"O-phosphonoserine","type":"exact"},{"name":"O-phosphorylated L-serine","type":"exact"},{"name":"O3-phosphoserine","type":"exact"},{"name":"OPSer","type":"exact"},{"name":"Phospho","type":"related"},{"name":"Phospho Seryl","type":"exact"},{"name":"Phosphorylation","type":"related"},{"name":"phosphorylations","type":"exact"},{"name":"serine phosphate ester","type":"exact"}],"termid":"MOD:00046","terms_by_termid":{"GO:0034599":null,"GO:0034605":null,"GO:0071475":null,"GO:1904547":null,"MOD:00046":null}}


id: GO:0044100
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The complex infective apparatus corresponding to the central mass of cytoplasm within a spore that is injected into a host cell by various parasitic microorganisms.","definition_xrefs":["PMID:16004371","PMID:9723921","GOC:mf","PMID:12076771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular anatomical structure","termid":"GO:0005622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"sporoplasm","termid":"GO:0044100"}


id: GO:2000248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of establishment or maintenance of neuroblast polarity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell fate commitment","termid":"GO:0010454"},{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of cell polarity","termid":"GO:0032878"},{"relation_name":"is_a","term_name":"negative regulation of asymmetric cell division","termid":"GO:0045769"},{"relation_name":"negatively_regulates","term_name":"establishment or maintenance of neuroblast polarity","termid":"GO:0045196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007163"},{"rel_name":"regulates","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0008150","GO:0007163"],"is_obsolete":false,"name":"negative regulation of establishment or maintenance of neuroblast polarity","synonyms":[{"name":"negative regulation of establishment and/or maintenance of neuroblast cell polarity","type":"exact"}],"termid":"GO:2000248"}


id: GO:0071848
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any TNFSF11-mediated signaling process that increases the rate, frequency, or extent of the ERK1 and ERK2 cascade.","definition_xrefs":["PMID:18606301","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling (obsolete GO:0071848)","synonyms":[{"name":"positive regulation of ERK1 and ERK2 cascade via RANKL-mediated signaling","type":"exact"},{"name":"positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signalling","type":"exact"}],"termid":"GO:0071848"}


id: PBO:0053048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"La ribonucleoprotein 6, translational regulator","termid":"PBO:0053048"}


id: PBO:0048270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GALNT7 divergent transcript","termid":"PBO:0048270"}


id: PBO:0034147
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-is_mutualism","termid":"PBO:0034147"}


id: GO:0061232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the mesonephric glomerular epithelium over time, from its formation to the mature structure. The mesonephric glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus in the mesonephros. The mesonephric glomerular epithelium consists of both parietal and visceral epithelium. Mesonephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesonephric nephron epithelium development","termid":"GO:0061241"},{"relation_name":"is_a","term_name":"glomerular epithelium development","termid":"GO:0072010"},{"relation_name":"part_of","term_name":"mesonephric glomerulus development","termid":"GO:0061224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric glomerular epithelium development","termid":"GO:0061232"}


id: PBO:0042809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"competing endogenous lncRNA 3 for miR-645","termid":"PBO:0042809"}


id: MONDO:0005470
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Drastic decline in blood pressure which happens after eating a meal and most likely due to insufficient compensation in cardiac output by the autonomic nervous system for the diversion of blood to the intestines.","definition_xrefs":["EFO:0005253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypotensive disorder","termid":"MONDO:0005468"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postprandial hypotension","termid":"MONDO:0005470","xrefs":{"Monarch":{"xref_id":"0005470"}}}


id: PR:O74396
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vps901 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 9a (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4F6.10","synonyms":[{"name":"Spom972h-vps901","type":"exact"},{"name":"vacuolar protein-targeting protein 9a (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74396"}


id: MONDO:0000115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic brain malformation characterized by displacement of the brain stem and cerebellum through the foramen magnum. It may result in hydrocephalus.","definition_xrefs":["NCIT:C84570"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chiari malformation","secondary_identifiers":["MESH:D001139","SCTID:253184003","UMLS:C0003803","MEDGEN:2065"],"synonyms":[{"name":"(Arnold) Chiari malformation","type":"exact"},{"name":"Arnold-Chiari malformation","type":"exact"},{"name":"Chiari malformation","type":"exact"}],"termid":"MONDO:0000115","xrefs":{"Monarch":{"xref_id":"0000115"}}}


id: GO:0000389
data:
  {"annotated_genes":["SJAG_01214","SJAG_00225"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72904,101047],"is_not":false,"summary":null,"term":"GO:0000389"}]},"cv_name":"biological_process","definition":"Recognition of the intron 3'-splice site by components of the assembling U2- or U12-type spliceosome.","definition_xrefs":["GOC:krc","ISBN:0879695897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA splice site recognition","termid":"GO:0006376"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00225":null,"SJAG_01214":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0016071","GO:0044085","GO:0010467"],"is_obsolete":false,"name":"mRNA 3'-splice site recognition","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0000382","GO:0000383"],"synonyms":[{"name":"U12-type nuclear mRNA 3'-splice site recognition","type":"narrow"},{"name":"U2-type nuclear mRNA 3'-splice site recognition","type":"narrow"},{"name":"nuclear mRNA 3'-splice site recognition","type":"exact"}],"termid":"GO:0000389","terms_by_termid":{"GO:0000389":null}}


id: RO:0002246
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"g is under-expressed in t iff g is expressed in t, and the expression level of g is decreased relative to some background.","direct_ancestors":[{"relation_name":"is_a","term_name":"expressed_in","termid":"RO:0002206"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"under-expressed_in","termid":"RO:0002246"}


id: PBO:0036314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nrd1 complex ATP-dependent 5' to 3' DNA/RNA helicase Sen1","termid":"PBO:0036314"}


id: PBO:0083380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps both the verified gene PDI1/YCL043C and the uncharacterized gene YCL042W","termid":"PBO:0083380"}


id: MONDO:0859336
data:
  {"annotated_genes":["SJAG_04513"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85397],"is_not":false,"summary":null,"term":"MONDO:0859336"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04513":null},"genotype_count":0,"is_obsolete":false,"name":"muscular dystrophy, congenital, with or without seizures","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620166","UMLS:C5774274","MEDGEN:1824047"],"termid":"MONDO:0859336","terms_by_termid":{"MONDO:0859336":null},"xrefs":{"Monarch":{"xref_id":"0859336"}}}


id: PBO:0071733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 31","termid":"PBO:0071733"}


id: PBO:0002534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFS family transmembrane transporter Mfs1 (predicted)","termid":"PBO:0002534"}


id: GO:0102947
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + (+)-delta-cadinene + NADPH + O2 = 8-hydroxy-(+)-delta-cadinene + NADP + H2O.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(+)-delta-cadinene-8-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-9045"],"termid":"GO:0102947"}


id: MONDO:0020554
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Heiner syndrome, also called cow's milk hypersensitivity, is a food induced pulmonary hypersensiting syndrome that affects primarily infants and that is characterized by pulmonary hemosiderosis, digestive bleeding, anemia and poor growing, improving with elimination of cow's milk from the diet.","definition_xrefs":["Orphanet:99932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary pulmonary hemosiderosis","termid":"MONDO:0020553"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Heiner syndrome","secondary_identifiers":["ICD9:518.89","MEDGEN:844833","UMLS:C3873343","SCTID:707441009","ICD10EXP:E83.1+","icd11.foundation:187112249","GARD:19714","ICD10EXP:J99.8*"],"synonyms":[{"name":"cow's milk hypersensitivity","type":"exact"}],"termid":"MONDO:0020554","xrefs":{"Monarch":{"xref_id":"0020554"}}}


id: MONDO:0012050
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"major depressive disorder","termid":"MONDO:0002009"},{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major depressive disorder 1","secondary_identifiers":["MESH:C563919","UMLS:C1837929","OMIM:608520","MEDGEN:325293"],"synonyms":[{"name":"MDD1","type":"exact"},{"name":"major depressive disorder 1","type":"exact"},{"name":"major depressive disorder type 1","type":"exact"},{"name":"unipolar depression 1","type":"related"}],"termid":"MONDO:0012050","xrefs":{"Monarch":{"xref_id":"0012050"}}}


id: PBO:0055663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat and Ig domain containing 1","termid":"PBO:0055663"}


id: PBO:0113224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Multigene complex, polymeric locus for maltose fermentation; encodes the MAL23 trans-acting MAL-activator, MAL21 maltose permease, and MAL22 maltase; on the right arm of Chromosome III, but not in strain S288C; mapped to 95.0 cM on chrIII","termid":"PBO:0113224"}


id: GO:1903069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of ER-associated ubiquitin-dependent protein catabolic process.","definition_xrefs":["GOC:rph","GOC:TermGenie","PMID:17872946","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of ER-associated ubiquitin-dependent protein catabolic process (obsolete GO:1903069)","termid":"GO:1903069"}


id: MONDO:0015627
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multiple epiphyseal dysplasia due to collagen 9 anomaly is a rare primary bone dysplasia disorder characterized by normal or mild short stature, early-onset pain and/or stiffness of the joints (mainly affecting knees but also elbows, wrists, ankles and fingers, with relative sparing of the hips) and early degenerative joint disease. Other skeletal anomalies (incl. varus or valgus deformities, osteochondritis dissecans, abnormal carpal shape, free articular bodies) and mild myopathy have also been reported.","definition_xrefs":["Orphanet:166002"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagenopathy","termid":"MONDO:0004603"},{"relation_name":"is_a","term_name":"multiple epiphyseal dysplasia","termid":"MONDO:0016648"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"multiple epiphyseal dysplasia due to collagen 9 anomaly","secondary_identifiers":["UMLS:C4707798","icd11.foundation:741183905","NANDO:2201016","ICD10CM:Q77.3","GARD:15024","SCTID:766717008","MEDGEN:1647610","DOID:0070305"],"termid":"MONDO:0015627","xrefs":{"Monarch":{"xref_id":"0015627"}}}


id: GO:0075273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of zygosporangium development, a process in which a fruiting body called zygosporangium is formed.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of spore-bearing organ development","termid":"GO:0075261"},{"relation_name":"is_a","term_name":"regulation of zygosporangium development","termid":"GO:0075272"},{"relation_name":"positively_regulates","term_name":"zygosporangium development","termid":"GO:0075271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of zygosporangium development","termid":"GO:0075273"}


id: GO:0097162
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a MADS box domain, a protein domain that encodes the DNA-binding MADS domain. The MADS domain binds to DNA sequences of high similarity to the motif CC[A/T]6GG termed the CArG-box. MADS-domain proteins are generally transcription factors. The length of the MADS-box is in the range of 168 to 180 base pairs.","definition_xrefs":["GOC:yaf","Wikipedia:MADS-box","InterPro:IPR002100","PMID:18296735"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"MADS box domain binding","termid":"GO:0097162"}


id: PBO:0061178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Gln (TTG) 8-1","termid":"PBO:0061178"}


id: PBO:0072176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S16 pseudogene 3","termid":"PBO:0072176"}


id: GO:0008748
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-ethylmaleimide + NADPH + 2 H+ = N-ethylsuccinimide + NADP+.","definition_xrefs":["MetaCyc:RXN0-5101"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"N-ethylmaleimide reductase activity","secondary_identifiers":["RHEA:35523"],"termid":"GO:0008748"}


id: PBO:0052860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 5-3","termid":"PBO:0052860"}


id: GO:0018647
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phenanthrene + O2 + NADH + H+ = H2O + NAD+ + phenanthrene-1,2-oxide.","definition_xrefs":["UM-BBD_enzymeID:e0333","PMID:1599252"],"gene_count":0,"genotype_count":0,"name":"obsolete phenanthrene 1,2-monooxygenase activity (obsolete GO:0018647)","termid":"GO:0018647"}


id: PR:O13610
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An rRNA-processing protein FCF1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02873","PANTHER:PTHR12416:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA-processing protein fcf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32H8.04c","secondary_identifiers":["UniProtKB:O13610"],"synonyms":[{"name":"Spom972h-FCF1","type":"exact"}],"termid":"PR:O13610"}


id: MONDO:0023119
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"primary myelofibrosis","termid":"MONDO:0009692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"familial myelofibrosis","secondary_identifiers":["GARD:8516","MEDGEN:444034","MESH:C536848","UMLS:C2931351"],"termid":"MONDO:0023119","xrefs":{"Monarch":{"xref_id":"0023119"}}}


id: GO:0043611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving isoprene, C5H8.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene metabolic process","termid":"GO:0042214"},{"relation_name":"is_a","term_name":"olefin metabolic process","termid":"GO:1900673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"isoprene metabolic process","synonyms":[{"name":"2-methyl-1,3-butadiene metabolic process","type":"exact"},{"name":"2-methyl-1,3-butadiene metabolism","type":"exact"},{"name":"hemiterpene metabolic process","type":"exact"},{"name":"hemiterpene metabolism","type":"exact"},{"name":"isoprene metabolism","type":"exact"}],"termid":"GO:0043611"}


id: MONDO:0005902
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Allergic reaction to peanuts that is triggered by the immune system.","definition_xrefs":["MESH:D021183"],"gene_count":0,"genotype_count":0,"name":"obsolete peanut allergic reaction (obsolete MONDO:0005902)","secondary_identifiers":["ICD9:995.3","DOID:4378","SCTID:91935009"],"synonyms":[{"name":"allergy to peanuts","type":"exact"},{"name":"nut allergic reaction of pigmented ciliary epithelial cell","type":"exact"},{"name":"peanut allergic reaction","type":"exact"},{"name":"peanut allergy","type":"related"},{"name":"pigmented ciliary epithelial cell nut allergic reaction","type":"exact"}],"termid":"MONDO:0005902","xrefs":{"Monarch":{"xref_id":"0005902"}}}


id: GO:1902572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of serine-type peptidase activity.","definition_xrefs":["GOC:TermGenie","PMID:20179351","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of peptidase activity","termid":"GO:0010466"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of serine-type peptidase activity","synonyms":[{"name":"down regulation of serine protease activity","type":"narrow"},{"name":"down regulation of serine-type peptidase activity","type":"exact"},{"name":"down-regulation of serine protease activity","type":"narrow"},{"name":"down-regulation of serine-type peptidase activity","type":"exact"},{"name":"downregulation of serine protease activity","type":"narrow"},{"name":"downregulation of serine-type peptidase activity","type":"exact"},{"name":"inhibition of serine protease activity","type":"narrow"},{"name":"inhibition of serine-type peptidase activity","type":"narrow"},{"name":"negative regulation of serine protease activity","type":"narrow"}],"termid":"GO:1902572"}


id: MONDO:1012374
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"blindness with enlarged globe, non-human animal","termid":"MONDO:1011989"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"blindness with enlarged globe, chicken","secondary_identifiers":["OMIA:001367-9031"],"termid":"MONDO:1012374","xrefs":{"Monarch":{"xref_id":"1012374"}}}


id: PBO:0045426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"divergent-paired related homeobox pseudogene 6","termid":"PBO:0045426"}


id: PBO:0017639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-P ortholog Fta2","termid":"PBO:0017639"}


id: GO:0010262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Initiation of a somatic embryo-an embryo arising from previously differentiated somatic cells, rather than from fused haploid gametes.","definition_xrefs":["GOC:sm","PMID:9611173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryo development ending in seed dormancy","termid":"GO:0009793"},{"relation_name":"is_a","term_name":"regeneration","termid":"GO:0031099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"somatic embryogenesis","termid":"GO:0010262"}


id: MONDO:0016401
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete energy metabolism disorder with epilepsy (obsolete MONDO:0016401)","secondary_identifiers":["Orphanet:225696"],"termid":"MONDO:0016401","xrefs":{"Monarch":{"xref_id":"0016401"}}}


id: FYPO:0005676
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the deubiquitination of one or more specific proteins, or of specific protein sites, does not occur after cells have been exposed to methyl methanesulfonate.","definition_xrefs":["PomBase:mah","PMID:27151298"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein modification during vegetative growth","termid":"FYPO:0000544"},{"relation_name":"is_a","term_name":"abolished proteolysis during vegetative growth","termid":"FYPO:0005377"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abolished protein deubiquitination following cellular response to methyl methanesulfonate during vegetative growth","synonyms":[{"name":"abolished protein deubiquitination during cellular response to methyl methanesulfonate","type":"related"},{"name":"abolished protein deubiquitination following cellular response to MMS","type":"exact"},{"name":"abolished protein deubiquitination following cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"abolished protein deubiquitylation following cellular response to methyl methanesulfonate","type":"exact"},{"name":"protein deubiquitination following cellular response to methyl methanesulfonate abolished","type":"exact"}],"termid":"FYPO:0005676"}


id: GO:0030125
data:
  {"annotated_genes":["SJAG_01809","SJAG_00800","SJAG_04644","SJAG_04565","SJAG_00104","SJAG_04609","SJAG_00379","SJAG_04517","SJAG_02805","SJAG_02282","SJAG_02177","SJAG_01167"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[73601,79560],"is_not":false,"summary":null,"term":"GO:0030125"},{"annotations":[62072,112787,112574,77588],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030121"},{"annotations":[108126,58380,74172,77905],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030122"},{"annotations":[58626,65332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030130"}]},"cv_name":"cellular_component","definition":"A clathrin coat found on a vesicle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin coat","termid":"GO:0030118"},{"relation_name":"is_a","term_name":"vesicle coat","termid":"GO:0030120"},{"relation_name":"part_of","term_name":"clathrin-coated vesicle membrane","termid":"GO:0030665"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00104":null,"SJAG_00379":null,"SJAG_00800":null,"SJAG_01167":null,"SJAG_01809":null,"SJAG_02177":null,"SJAG_02282":null,"SJAG_02805":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04609":null,"SJAG_04644":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"clathrin vesicle coat","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0030125","terms_by_termid":{"GO:0030121":null,"GO:0030122":null,"GO:0030125":null,"GO:0030130":null}}


id: GO:0023068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a signal is conveyed via the phloem.","definition_xrefs":["GOC:mtg_signal"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transmission via phloem (obsolete GO:0023068)","synonyms":[{"name":"signal transmission via phloem","type":"exact"}],"termid":"GO:0023068"}


id: GO:0039675
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of the viral genome or a viral particle out of the host cell nucleus through the nuclear pore.","definition_xrefs":["PMID:12921991","VZ:1953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exit of virus from host cell nucleus","termid":"GO:0039674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"exit of virus from host cell nucleus through nuclear pore","synonyms":[{"name":"exit of virus from host cell nucleus through nuclear pore complex","type":"exact"},{"name":"nuclear pore exit of virus","type":"exact"},{"name":"viral enome export through nuclear pore","type":"exact"}],"termid":"GO:0039675"}


id: PBO:0057244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 449a","termid":"PBO:0057244"}


id: PBO:0049910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexosaminidase subunit beta","termid":"PBO:0049910"}


id: GO:1990585
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trans-4-hydroxy-L-prolyl-[protein] + UDP-beta-L-arabinofuranose = H+ + O-(beta-L-arabinofuranosyl)-trans-4-hydroxy-L-prolyl-[protein] + UDP.","definition_xrefs":["PMID:24036508","RHEA:49472"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"hydroxyproline O-arabinosyltransferase activity","secondary_identifiers":["EC:2.4.2.58","MetaCyc:RXN-15011"],"synonyms":[{"name":"HPAT","type":"exact"}],"termid":"GO:1990585"}


id: PBO:0050534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"15-hydroxyprostaglandin dehydrogenase","termid":"PBO:0050534"}


id: PBO:0085210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Oxysterol-binding  phosphatidylserine transferase; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability; GFP-fusion protein localizes to the cell periphery; overexpression extends lifespan by promoting vacuolar fusion; OSH6 has a paralog, OSH7, that arose from the whole genome duplication","termid":"PBO:0085210"}


id: PBO:0034746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved GTPase Gpn2 (predicted)","termid":"PBO:0034746"}


id: FYECO:0000220
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"A nitrogen source shift condition in which cells are first grown in a medium with glutamate as the nitrogen source, and then shifted to a medium with proline as the nitrogen source.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen source shift","termid":"FYECO:0000221"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitrogen source shift, glutamate to proline","termid":"FYECO:0000220"}


id: PBO:0045448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydropyrimidinase","termid":"PBO:0045448"}


id: MONDO:0008968
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholestasis with gallstone, ataxia, and visual disturbance","secondary_identifiers":["MEDGEN:347812","OMIM:214980","MESH:C565856","UMLS:C1859161"],"synonyms":[{"name":"cholestasis with gallstone, ataxia, and visual disturbance","type":"exact"}],"termid":"MONDO:0008968","xrefs":{"Monarch":{"xref_id":"0008968"}}}


id: PATO:0001235
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001235 strength value (obsolete PATO:0001235)","termid":"PATO:0001235"}


id: GO:0032527
data:
  {"annotated_genes":["SJAG_03345","SJAG_03907","SJAG_00530"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72856],"is_not":false,"summary":null,"term":"GO:0032527"},{"annotations":[75323,78846],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030970"}]},"cv_name":"biological_process","definition":"The directed movement of proteins from the endoplasmic reticulum.","definition_xrefs":["GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00530":null,"SJAG_03345":null,"SJAG_03907":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein exit from endoplasmic reticulum","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"protein exit from ER","type":"exact"},{"name":"protein export from ER","type":"exact"},{"name":"protein export from endoplasmic reticulum","type":"exact"}],"termid":"GO:0032527","terms_by_termid":{"GO:0030970":null,"GO:0032527":null}}


id: PBO:0056852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489","termid":"PBO:0056852"}


id: PBO:0082999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic serine hydroxymethyltransferase; converts serine to glycine plus 5,10 methylenetetrahydrofolate; major isoform involved in generating precursors for purine, pyrimidine, amino acid, and lipid biosynthesis","termid":"PBO:0082999"}


id: FYPO:0007176
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plasma membrane surrounding the cell division site is abolished during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to plasma membrane at cell division site during vegetative growth","termid":"FYPO:0006936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abolished protein localization to plasma membrane at cell division site during mitosis","synonyms":[{"name":"abolished protein localisation to plasma membrane at cell division site during mitosis","type":"exact"},{"name":"abolished protein localization in plasma membrane at cell division site during mitosis","type":"exact"},{"name":"abolished protein localization to cell membrane at cell division site during mitosis","type":"exact"},{"name":"abolished protein localization to plasma membrane at cell division site during mitosis during vegetative growth","type":"exact"},{"name":"abolished protein localization to plasma membrane at cell division site during mitotic M phase","type":"related"},{"name":"abolished protein localization to plasma membrane at cell division site during mitotic nuclear division","type":"exact"},{"name":"protein localization to plasma membrane at cell division site abolished during mitosis","type":"exact"}],"termid":"FYPO:0007176"}


id: PBO:0027811
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_spindle_elongation","termid":"PBO:0027811"}


id: GO:0004338
data:
  {"annotated_genes":["SJAG_01888","SJAG_05001","SJAG_02192","SJAG_03646","SJAG_01171"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70270,70437,73091,76752,94898],"is_not":false,"summary":null,"term":"GO:0004338"}]},"cv_name":"molecular_function","definition":"Catalysis of the successive hydrolysis of beta-D-glucose units from the non-reducing ends of (1->3)-beta-D-glucans, releasing alpha-glucose.","definition_xrefs":["EC:3.2.1.58"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01171":null,"SJAG_01888":null,"SJAG_02192":null,"SJAG_03646":null,"SJAG_05001":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0016798","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"glucan exo-1,3-beta-glucosidase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3.2.1.58-RXN"],"synonyms":[{"name":"1,3-beta-glucan glucohydrolase activity","type":"broad"},{"name":"beta-1,3-glucan exo-hydrolase activity","type":"related"},{"name":"exo (1->3)-beta-glucanase activity","type":"related"},{"name":"exo-1,3-beta-D-glucanase activity","type":"related"},{"name":"exo-1,3-beta-glucanase activity","type":"related"},{"name":"exo-1,3-beta-glucosidase activity","type":"related"},{"name":"exo-beta-(1->3)-D-glucanase activity","type":"related"},{"name":"exo-beta-(1->3)-glucanohydrolase activity","type":"related"},{"name":"exo-beta-1,3-D-glucanase activity","type":"related"},{"name":"exo-beta-1,3-glucanase activity","type":"related"},{"name":"glucan 1,3-beta-glucosidase activity","type":"broad"}],"termid":"GO:0004338","terms_by_termid":{"GO:0004338":null}}


id: PBO:0072978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretoglobin family 2B member 2","termid":"PBO:0072978"}


id: PBO:0078163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 40","termid":"PBO:0078163"}


id: MONDO:0008483
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"stutter disorder","termid":"MONDO:0000723"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stuttering, familial persistent, 1","secondary_identifiers":["UMLS:C3489627","OMIM:184450","MEDGEN:483580"],"synonyms":[{"name":"STUT1","type":"exact"},{"name":"stammering","type":"related"},{"name":"stuttering, familial persistent, 1","type":"exact"}],"termid":"MONDO:0008483","xrefs":{"Monarch":{"xref_id":"0008483"}}}


id: FYPO:0004344
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a larger than normal proportion of cells in the population remains viable when cells the population are subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population viability","termid":"FYPO:0002057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"increased viability upon nitrogen starvation","synonyms":[{"name":"increased cell population viability upon nitrogen starvation","type":"exact"},{"name":"increased viability during nitrogen starvation","type":"exact"},{"name":"increased viability upon nitrogen depletion","type":"exact"},{"name":"increased viability upon nitrogen deprivation","type":"exact"}],"termid":"FYPO:0004344"}


id: GO:0035443
data:
  {"annotated_genes":["SJAG_01344","SJAG_01983","SJAG_03577","SJAG_03497","SJAG_01660","SJAG_05213"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95316],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098709"},{"annotations":[112924],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160007"},{"annotations":[96848,117999,95862],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071996"},{"annotations":[102806],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140207"}]},"cv_name":"biological_process","definition":"The directed movement of a tripeptide across a membrane by means of some agent such as a transporter or pore. A tripeptide is a compound containing three amino acids linked together by peptide bonds.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligopeptide transmembrane transport","termid":"GO:0035672"},{"relation_name":"is_a","term_name":"tripeptide transport","termid":"GO:0042939"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01344":null,"SJAG_01660":null,"SJAG_01983":null,"SJAG_03497":null,"SJAG_03577":null,"SJAG_05213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"tripeptide transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"tripeptide membrane transport","type":"exact"}],"termid":"GO:0035443","terms_by_termid":{"GO:0071996":null,"GO:0098709":null,"GO:0140207":null,"GO:0160007":null}}


id: MONDO:0015171
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital enterocyte heparan sulfate deficiency is characterized by massive enteric protein loss, secretory diarrhea, and intolerance to enteral feeds during the first few weeks of life.","definition_xrefs":["Orphanet:103910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"congenital enterocyte heparan sulfate deficiency","secondary_identifiers":["GARD:19839","MEDGEN:1373054","SCTID:725591002","UMLS:C4511238"],"termid":"MONDO:0015171","xrefs":{"Monarch":{"xref_id":"0015171"}}}


id: PBO:0054886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2300","termid":"PBO:0054886"}


id: GO:0098604
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: Se-Adenosyl-L-selenohomocysteine + H2O => Adenosine + Selenohomocysteine.","definition_xrefs":["PMID:1711890","GOC:dos","PMID:7305945"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trialkylsulfonium hydrolase activity","termid":"GO:0016802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"adenosylselenohomocysteinase activity","secondary_identifiers":["Reactome:R-HSA-2408532"],"termid":"GO:0098604"}


id: FYPO:0007968
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle after normal chromosome separation in which pushing forces exerted by microtubules protruding from the spindle pole bodies displace one of the daughter nuclei to the site of cytokinesis. The septum then physically divides that nucleus into two parts, giving rise to inviable daughter cell.","definition_xrefs":["PomBase:vw","PomBase:mlr","PMID:26031557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cut following normal mitotic chromosome condensation","termid":"FYPO:0001055"},{"relation_name":"output_of","term_name":"long mitotic spindle microtubules protruding beyond spindle pole body","termid":"FYPO:0003787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0002403"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"output_of","termid":"FYPO:0000120"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0002399"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0000120","FYPO:0002403","FYPO:0001985","FYPO:0000004","FYPO:0000337","FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0000032","FYPO:0000641"],"is_obsolete":false,"name":"cut with mitotic spindle microtubules protruding beyond spindle pole body","termid":"FYPO:0007968"}


id: MONDO:0004665
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A subtype of classical Hodgkin lymphoma characterized by collagen bands that surround at least one nodule, and Hodgkin and Reed-Sternberg cells with lacunar type morphology. (WHO, 2008)","definition_xrefs":["NCIT:C3518"],"direct_ancestors":[{"relation_name":"is_a","term_name":"classic Hodgkin lymphoma","termid":"MONDO:0009348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"nodular sclerosis classical Hodgkin lymphoma","secondary_identifiers":["MEDGEN:101830","SCTID:118608000","GARD:19591","ICD9:201.5","EFO:0004708","icd11.foundation:1995941600","DOID:8838","Orphanet:98843","ICDO:9663/3","ONCOTREE:NSCHL","UMLS:C0152268"],"synonyms":[{"name":"Hodgkin lymphoma, nodular sclerosis","type":"exact"},{"name":"Hodgkin's disease nodular sclerosis","type":"exact"},{"name":"Hodgkin's disease, nodular sclerosis","type":"related"},{"name":"Hodgkin's disease, nodular sclerosis NOS (morphologic abnormality)","type":"exact"},{"name":"Hodgkin's disease, nodular sclerosis of unspecified site","type":"exact"},{"name":"Hodgkin's lymphoma, nodular sclerosis","type":"related"},{"name":"Hodgkin's nodular sclerosis","type":"exact"},{"name":"NSCHL","type":"exact"},{"name":"NSHD","type":"exact"},{"name":"NSHL","type":"exact"},{"name":"classical Hodgkin lymphoma, nodular sclerosis","type":"exact"},{"name":"nodular sclerosis Classic Hodgkin lymphoma","type":"exact"},{"name":"nodular sclerosis Hodgkin lymphoma","type":"exact"},{"name":"nodular sclerosis Hodgkin's disease","type":"exact"},{"name":"nodular sclerosis Hodgkin's lymphoma","type":"exact"},{"name":"nodular sclerosis classical Hodgkin lymphoma","type":"exact"}],"termid":"MONDO:0004665","xrefs":{"Monarch":{"xref_id":"0004665"}}}


id: PBO:0086942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RanGTP-binding protein; inhibits RanGAP1 (Rna1p)-mediated GTP hydrolysis of RanGTP (Gsp1p); shares similarity to proteins in other fungi but not in higher eukaryotes","termid":"PBO:0086942"}


id: PR:P54874
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hcs1 gene.","definition_xrefs":["UniProtKB:P54874","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxymethylglutaryl-CoA synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F8.14c","synonyms":[{"name":"3-hydroxy-3-methylglutaryl coenzyme A synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"HMG-CoA synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-hcs1","type":"exact"}],"termid":"PR:P54874"}


id: GO:0010878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The accumulation and maintenance in cells or tissues of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid storage","termid":"GO:0019915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cholesterol storage","synonyms":[{"name":"cholesterol sequestration","type":"narrow"},{"name":"sequestration of cholesterol","type":"narrow"}],"termid":"GO:0010878"}


id: MONDO:1012667
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any von Willebrand disease that occurs in dogs and is characterized by qualitative abnormalities of the glycoprotein von Willebrand factor (vWF) and moderate to severe bleeding due to a mutation in the VWF gene.","definition_xrefs":["OMIA:001339-9615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"Von Willebrand disease, dog","termid":"MONDO:1011612"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand disease II, dog","termid":"MONDO:1012667","xrefs":{"Monarch":{"xref_id":"1012667"}}}


id: GO:0055046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the pollen grain over time, from its formation as the microspore to the mature structure.","definition_xrefs":["GOC:mtg_plant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"pollen development","termid":"GO:0009555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"microgametogenesis","secondary_identifiers":["Wikipedia:Microgametogenesis"],"synonyms":[{"name":"pollen development from the microspore","type":"exact"}],"termid":"GO:0055046"}


id: PBO:0005561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid transporter (predicted)","termid":"PBO:0005561"}


id: MONDO:0015542
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hemophagocytic lymphohistiocytosis due to infections, autoimmune disorders, or underlying malignancies. Signs and symptoms include fever, lymphadenopathy, hepatomegaly, splenomegaly, and pancytopenia.","definition_xrefs":["NCIT:C121184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemophagocytic syndrome","termid":"MONDO:0015540"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"secondary hemophagocytic lymphohistiocytosis","secondary_identifiers":["Orphanet:158041","MEDGEN:883550","GARD:20026","UMLS:C4054044"],"synonyms":[{"name":"acquired hemophagocytic lymphohistiocytosis","type":"exact"},{"name":"acquired hemophagocytic syndrome","type":"exact"},{"name":"reactive hemophagocytic syndrome","type":"exact"}],"termid":"MONDO:0015542","xrefs":{"Monarch":{"xref_id":"0015542"}}}


id: PBO:0072802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"senescence associated long non-coding RNA 1","termid":"PBO:0072802"}


id: PBO:0071929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 6","termid":"PBO:0071929"}


id: PBO:0018029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA acetyltransferase Tan1 (predicted)","termid":"PBO:0018029"}


id: GO:0085030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process carried out by symbiont gene products that enables a symbiotic interaction with a host organism, that is beneficial to the host organism.","definition_xrefs":["GOC:pdt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological process involved in symbiotic interaction","termid":"GO:0044403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiotic process benefiting host","synonyms":[{"name":"mutualism","type":"related"}],"termid":"GO:0085030"}


id: GO:0075342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host PML body. A PML body is a nuclear body that reacts against SP100 auto-antibodies (PML = promyelocytic leukemia). The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:BHF","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated disruption of host cellular anatomical structure","termid":"GO:0052008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host cell PML body","synonyms":[{"name":"catabolism by symbiont of host cell PML body","type":"exact"},{"name":"degradation by symbiont of host cell PML body","type":"exact"},{"name":"disassembly by symbiont of host cell PML NB","type":"exact"},{"name":"disassembly by symbiont of host cell PML body","type":"exact"},{"name":"disassembly by symbiont of host cell PML body during symbiotic interaction","type":"exact"},{"name":"disassembly by symbiont of host cell PML nuclear body","type":"exact"},{"name":"disruption by symbiont of host cell PML body","type":"exact"}],"termid":"GO:0075342"}


id: PBO:0044959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrogenase/reductase 4 like 1 (pseudogene)","termid":"PBO:0044959"}


id: PBO:0005086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBF1/Su(H)/LAG-1 family transcription factor Cbf11","termid":"PBO:0005086"}


id: MOD:01620
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two cysteine residues by formation of a chain of three or more bonded sulfur atoms.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur containing modified residue","termid":"MOD:00860"},{"relation_name":"is_a","term_name":"multisulfide crosslinked residues","termid":"MOD:01619"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"polysulfide crosslinked residues","termid":"MOD:01620"}


id: MONDO:0016770
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Actinic lichen planus (LP) is a rare variant of cutaneous lichen planus characterized by the development of photo-distributed lichenoid lesions.","definition_xrefs":["Orphanet:254395"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lichen planus","termid":"MONDO:0006572"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"actinic lichen planus","secondary_identifiers":["MEDGEN:590348","SCTID:200999007","icd11.foundation:365229579","GARD:12673","UMLS:C0406365"],"synonyms":[{"name":"actinic LP","type":"exact"},{"name":"lichen planus actinus","type":"exact"},{"name":"lichen planus subtropicus","type":"exact"},{"name":"lichen planus tropicus","type":"exact"},{"name":"lichenoid melanodermatitis","type":"exact"},{"name":"summertime actinic lichenoid eruption","type":"exact"}],"termid":"MONDO:0016770","xrefs":{"Monarch":{"xref_id":"0016770"}}}


id: PBO:0042283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD1c molecule","termid":"PBO:0042283"}


id: PR:000050456
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An RNA-binding protein rnc1 (Schizosaccharomyces pombe) that has not been phosphorylated at positions equivalent to Thr-45, Thr-50, Thr-171, Thr-177, Ser-278, and Ser-286 of the amino acid sequence represented by UniProtKB:O74919. Example: UniProtKB:O74919, Thr-45/Thr-50/Thr-171/Thr-177/Ser-278/Ser-286, PR:000026291.","definition_xrefs":["PRO:DAN","PomBase:VW","PMID:31911490"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA-binding protein rnc1 (Schizosaccharomyces pombe)","termid":"PR:000050452"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rnc1/UnPhos:(T45,T50,T171,T177,S278,S286)","pombase_gene_id":"SPCC757.09c","synonyms":[{"name":"PomBase_original_PRO_term_name: RNA-binding protein rnc1 unphosphorylated 2 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-rnc1/UnPhos:2","type":"exact"},{"name":"UniProtKB:O74919, Thr-45/Thr-50/Thr-171/Thr-177/Ser-278/Ser-286, PR:000026291","type":"narrow"},{"name":"rnc1/UnPhos:(T45,T50,T171,T177,S278,S286)","type":"exact"}],"termid":"PR:000050456"}


id: GO:0051571
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H3-K4 methylation (obsolete GO:0051571)","synonyms":[{"name":"activation of histone H3-K4 methylation","type":"narrow"},{"name":"stimulation of histone H3-K4 methylation","type":"narrow"},{"name":"up regulation of histone H3-K4 methylation","type":"exact"},{"name":"up-regulation of histone H3-K4 methylation","type":"exact"},{"name":"upregulation of histone H3-K4 methylation","type":"exact"}],"termid":"GO:0051571"}


id: PBO:0046615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group PABLB member 1, envelope","termid":"PBO:0046615"}


id: GO:0030476
data:
  {"annotated_genes":["SJAG_04868","SJAG_00974","SJAG_01321","SJAG_03013"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88000,88492,90038,91565],"is_not":false,"summary":null,"term":"GO:0030476"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an ascospore wall. During sporulation in Ascomycota, each ascospore nucleus becomes surrounded by a specialized spore wall, formed by deposition of spore wall components in the lumenal space between the outer and inner leaflets of the prospore membrane. An example of this process is found in Saccharomyces cerevisiae.","definition_xrefs":["GOC:mcc","PMID:14702385"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"spore wall assembly","termid":"GO:0042244"},{"relation_name":"is_a","term_name":"fungal-type cell wall assembly","termid":"GO:0071940"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"ascospore wall biogenesis","termid":"GO:0070591"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00974":null,"SJAG_01321":null,"SJAG_03013":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0030437"}],"interesting_parent_ids":["GO:0044085","GO:0030437","GO:0008150","GO:0007049","GO:0071554"],"is_obsolete":false,"name":"ascospore wall assembly","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0007152"],"synonyms":[{"name":"spore wall assembly","type":"broad"}],"termid":"GO:0030476","terms_by_termid":{"GO:0030476":null}}


id: PBO:0036412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPOUT domain containing methyltransferase, implicated in chromosome segregation","termid":"PBO:0036412"}


id: GO:1903003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein deubiquitination.","definition_xrefs":["GOC:bf","PMID:22970133","GOC:TermGenie","GOC:PARL","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein deubiquitination","termid":"GO:0090085"},{"relation_name":"is_a","term_name":"positive regulation of protein modification by small protein conjugation or removal","termid":"GO:1903322"},{"relation_name":"positively_regulates","term_name":"protein deubiquitination","termid":"GO:0016579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"positively_regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein deubiquitination","synonyms":[{"name":"activation of deubiquitination","type":"narrow"},{"name":"activation of protein deubiquitination","type":"narrow"},{"name":"activation of protein deubiquitinylation","type":"narrow"},{"name":"activation of protein deubiquitylation","type":"narrow"},{"name":"positive regulation of deubiquitination","type":"exact"},{"name":"positive regulation of protein deubiquitinylation","type":"exact"},{"name":"positive regulation of protein deubiquitylation","type":"exact"},{"name":"up regulation of deubiquitination","type":"exact"},{"name":"up regulation of protein deubiquitination","type":"exact"},{"name":"up regulation of protein deubiquitinylation","type":"exact"},{"name":"up regulation of protein deubiquitylation","type":"exact"},{"name":"up-regulation of deubiquitination","type":"exact"},{"name":"up-regulation of protein deubiquitination","type":"exact"},{"name":"up-regulation of protein deubiquitinylation","type":"exact"},{"name":"up-regulation of protein deubiquitylation","type":"exact"},{"name":"upregulation of deubiquitination","type":"exact"},{"name":"upregulation of protein deubiquitination","type":"exact"},{"name":"upregulation of protein deubiquitinylation","type":"exact"},{"name":"upregulation of protein deubiquitylation","type":"exact"}],"termid":"GO:1903003"}


id: PBO:0058643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6772","termid":"PBO:0058643"}


id: PBO:0113264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoinositide binding protein; required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (CVT) pathway; binds PtdIns(3,5)P2, PI3P and PI4P; WD-40 repeat-containing protein and PROPPIN family member; relocalizes from the vacuole to cytoplasm upon replication stress; forms higher order helical assemblies; mammalian homologs include: WIPI1, WIPI2, WIPI3 and WDR45; human WDR45 mutations cause static encephalopathy of childhood with neurodegeneration in adulthood (SENDA)","termid":"PBO:0113264"}


id: GO:0061271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the mesonephric renal vesicle.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal to epithelial transition involved in mesonephros morphogenesis","termid":"GO:0061261"},{"relation_name":"is_a","term_name":"mesenchymal to epithelial transition involved in renal vesicle formation","termid":"GO:0072036"},{"relation_name":"part_of","term_name":"mesonephric renal vesicle formation","termid":"GO:0061262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal to epithelial transition involved in mesonephric renal vesicle formation","termid":"GO:0061271"}


id: PBO:0090406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATOR2-SEACAT complex/COPII-coated vesicle component/nuclear pore outer ring WD repeat protein Sec13","termid":"PBO:0090406"}


id: MONDO:0013892
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Glomerulonephritis characterized by C3 accumulation with little or absent deposition of immunoglobulin, in the absence of ultrastructural electron-dense transformation seen in dense deposit disease.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary nephritis","termid":"MONDO:0005334"},{"relation_name":"is_a","term_name":"non-immunoglobulin-mediated membranoproliferative glomerulonephritis","termid":"MONDO:0018013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"C3 glomerulonephritis","secondary_identifiers":["UMLS:C4055342","Orphanet:329931","OMIM:614809","NCIT:C123043","GARD:16487","MEDGEN:884569"],"synonyms":[{"name":"CFHR5 deficiency","type":"related"},{"name":"complement-mediated membranoproliferative glomerulonephritis","type":"exact"},{"name":"nephropathy due to CFHR5 deficiency","type":"exact"}],"termid":"MONDO:0013892","xrefs":{"Monarch":{"xref_id":"0013892"}}}


id: MONDO:0018827
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of Chilblain lupus that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"skin vascular disease","termid":"MONDO:0019293"},{"relation_name":"is_a","term_name":"chilblain lupus","termid":"MONDO:0019557"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"},{"relation_name":"is_a","term_name":"type 1 interferonopathy of childhood","termid":"MONDO:0957408"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005093"],"is_obsolete":false,"name":"familial chilblain lupus","secondary_identifiers":["OMIMPS:610448","Orphanet:481662","GARD:17874","MEDGEN:1807766","UMLS:C5688224"],"synonyms":[{"name":"hereditary Chilblain lupus","type":"exact"},{"name":"hereditary chilblain lupus","type":"exact"}],"termid":"MONDO:0018827","xrefs":{"Monarch":{"xref_id":"0018827"}}}


id: GO:1900537
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of glucose homeostasis.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of glucose homeostasis (obsolete GO:1900537)","synonyms":[{"name":"down regulation of glucose homeostasis","type":"exact"},{"name":"down-regulation of glucose homeostasis","type":"exact"},{"name":"downregulation of glucose homeostasis","type":"exact"},{"name":"inhibition of glucose homeostasis","type":"narrow"},{"name":"negative regulation of glucose homeostasis","type":"exact"}],"termid":"GO:1900537"}


id: GO:0000092
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle phase during which the polar microtubules elongate and the two poles of the spindle move farther apart as part of mitosis.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic anaphase","termid":"GO:0000090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000090"},{"rel_name":"part_of","termid":"GO:0000087"}],"interesting_parent_ids":["GO:0000090","GO:0000087","GO:0008150"],"is_obsolete":false,"name":"mitotic anaphase B","termid":"GO:0000092"}


id: GO:2000169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of peptidyl-cysteine S-nitrosylation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein modification process","termid":"GO:0031399"},{"relation_name":"regulates","term_name":"peptidyl-cysteine S-nitrosylation","termid":"GO:0018119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of peptidyl-cysteine S-nitrosylation","termid":"GO:2000169"}


id: PBO:0049953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypoxia inducible factor 3 subunit alpha","termid":"PBO:0049953"}


id: GO:0035817
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process where sodium ions are taken up from the collecting ducts and proximal and distal loops of the nephron, which contributes to decreasing the amount of sodium that is excreted in urine per unit time.","definition_xrefs":["GOC:yaf","GOC:mtg_25march11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal sodium ion absorption","termid":"GO:0070294"},{"relation_name":"part_of","term_name":"negative regulation of renal sodium excretion","termid":"GO:0035814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"renal sodium ion absorption involved in negative regulation of renal sodium excretion","termid":"GO:0035817"}


id: FYPO:0002895
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a greater extent than normal during a cellular response to calcium ions. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000294","FYPO:0006551","FYPO:0005447"],"is_obsolete":false,"name":"increased transcription during cellular response to calcium ion","synonyms":[{"name":"increased transcription during cellular response to calcium","type":"exact"},{"name":"increased transcription during cellular response to calcium ion during mitotic cell cycle","type":"related"},{"name":"increased transcription during cellular response to calcium ion during vegetative growth","type":"exact"},{"name":"increased transcription in response to calcium","type":"exact"}],"termid":"FYPO:0002895"}


id: PBO:0004562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin Snx3 (predicted)","termid":"PBO:0004562"}


id: PBO:0089106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic tryptophan-tRNA ligase Wrs1","termid":"PBO:0089106"}


id: MONDO:0003946
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenoma that arises from the vagina and is characterized by a villous architectural pattern.","definition_xrefs":["NCIT:C40259"],"direct_ancestors":[{"relation_name":"is_a","term_name":"villous adenoma","termid":"MONDO:0000502"},{"relation_name":"is_a","term_name":"vaginal adenoma","termid":"MONDO:0003434"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vaginal villous adenoma","secondary_identifiers":["MEDGEN:275577","UMLS:C1519936","DOID:6613"],"synonyms":[{"name":"vagina villous adenoma","type":"exact"},{"name":"vaginal villous adenoma","type":"exact"}],"termid":"MONDO:0003946","xrefs":{"Monarch":{"xref_id":"0003946"}}}


id: PBO:0027227
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_heme_binding","termid":"PBO:0027227"}


id: PBO:0073738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 1 member 5","termid":"PBO:0073738"}


id: GO:0051553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of flavones, a class of pigmented plant compounds based on 2-phenyl-4H-1-benzopyran-4-one (2-phenylchromone).","definition_xrefs":["GOC:ai","PMID:18567791"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavonoid biosynthetic process","termid":"GO:0009813"},{"relation_name":"is_a","term_name":"pigment biosynthetic process","termid":"GO:0046148"},{"relation_name":"is_a","term_name":"flavone metabolic process","termid":"GO:0051552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"flavone biosynthetic process","synonyms":[{"name":"2-phenyl-4H-1-benzopyran-4-one biosynthesis","type":"narrow"},{"name":"2-phenyl-4H-1-benzopyran-4-one biosynthetic process","type":"narrow"},{"name":"2-phenylchromone biosynthesis","type":"narrow"},{"name":"2-phenylchromone biosynthetic process","type":"narrow"}],"termid":"GO:0051553"}


id: PBO:0081075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type palmitoyltransferase 7","termid":"PBO:0081075"}


id: PBO:0113300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in axial bud site selection; prevents repolarization of cells at previous division sites; recruited with Nba1p to the cell cortex and to cytokinesis remnants (bud scars) by Aim44p and Nap1p where Nba1p prevents Rsr1p-mediated activation of Cdc24p, and therefore Cdc42p activation; acts with Nba1p to establish transient bud scar localization of Rga1p, a Cdc42p GAP; localizes to the nucleus and to cell division site during G2/M, and is then stably recruited to cytokinesis remnants","termid":"PBO:0113300"}


id: PBO:0050197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 14","termid":"PBO:0050197"}


id: GO:0106213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which outer kinetochore components delocalize from the centromere, contributing to the rearrangement of chromosomes into the orientation characteristic of meiotic prophase I.","definition_xrefs":["PMID:27611693","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome organization involved in meiotic cell cycle","termid":"GO:0070192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"kinetochore disassembly involved in meiotic chromosome organization","synonyms":[{"name":"kinetochore disassembly from spindle pole body involved in chromosome organization involved in meiotic cell cycle","type":"exact"}],"termid":"GO:0106213"}


id: FYPO:0005717
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is normal (i.e. indistinguishable from wild type) during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein kinase activity","termid":"FYPO:0003075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000654"],"is_obsolete":false,"name":"normal protein kinase activity during mitosis","synonyms":[{"name":"normal protein kinase activity during mitotic M phase","type":"related"},{"name":"normal protein kinase activity during mitotic M-phase","type":"related"}],"termid":"FYPO:0005717"}


id: GO:0060634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of 4,6-pyruvylated galactose residue biosynthetic process, the chemical reactions and pathways resulting in the formation of the pyruvylated galactose residue 4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-(1->3)-. The galactose residue is part of a larger polysaccharide chain.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polysaccharide biosynthetic process","termid":"GO:0032885"},{"relation_name":"regulates","term_name":"4,6-pyruvylated galactose residue biosynthetic process","termid":"GO:0051072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of 4,6-pyruvylated galactose residue biosynthetic process","termid":"GO:0060634"}


id: GO:0016727
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces an oxygen molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups","termid":"GO:0016725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on CH or CH2 groups, oxygen as acceptor","secondary_identifiers":["EC:1.17.3.-"],"termid":"GO:0016727"}


id: PBO:0044971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAH-box helicase 8","termid":"PBO:0044971"}


id: PBO:0034313
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_intracellular_endoparasite","termid":"PBO:0034313"}


id: PBO:0079137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translin associated factor X interacting protein 1","termid":"PBO:0079137"}


id: PBO:0061335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family, member B13","termid":"PBO:0061335"}


id: PBO:0086345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pseudouridine synthase catalytic subunit of box H/ACA snoRNPs; acts on large and small rRNAs, on snRNA U2, and on some mRNAs; mutations in human ortholog dyskerin cause the disorder dyskeratosis congenita; small nucleolar ribonucleoprotein particles are also known as snoRNPs","termid":"PBO:0086345"}


id: FYPO:0003836
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of RNA polymerase II carboxy-terminal domain kinase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000707","FYPO:0000652","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"decreased RNA polymerase II carboxy-terminal domain kinase activity","synonyms":[{"name":"reduced RNA polymerase II carboxy-terminal domain kinase activity","type":"exact"}],"termid":"FYPO:0003836"}


id: PBO:0068081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 387","termid":"PBO:0068081"}


id: PBO:0067172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 228, pseudogene","termid":"PBO:0067172"}


id: FYPO:0005662
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a promoter that contains one or more TR boxes occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah","PMID:7975894"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000294"],"is_obsolete":false,"name":"increased transcription from TR box","synonyms":[{"name":"expression of TR box target genes increased","type":"related"}],"termid":"FYPO:0005662"}


id: GO:0071684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process in which an organism emerges from a surrounding protective structure such as an egg or pupa case.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"organism emergence from protective structure","termid":"GO:0071684"}


id: GO:0042881
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of D-galactonate, the D-enantiomer of galactonate, from one side of a membrane to the other.","definition_xrefs":["GOC:mah","GOC:mtg_transport","GOC:jl","ISBN:0198506732","GOC:jsg","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"carbohydrate transmembrane transporter activity","termid":"GO:0015144"},{"relation_name":"is_a","term_name":"aldonate transmembrane transporter activity","termid":"GO:0042879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"D-galactonate transmembrane transporter activity","termid":"GO:0042881"}


id: PBO:0065025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 3 pseudogene 4","termid":"PBO:0065025"}


id: PBO:0048202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-aminobutyric acid type A receptor subunit alpha6","termid":"PBO:0048202"}


id: PBO:0077270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 11","termid":"PBO:0077270"}


id: PBO:0087233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway; involved in maintenance of cell wall integrity; required for mitophagy; involved in organization of the actin cytoskeleton; secretory pathway Wsc1p is required for the arrest of secretion response","termid":"PBO:0087233"}


id: MONDO:0014416
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Cushing syndrome due to macronodular adrenal hyperplasia in which the cause of the disease is a mutation in the ARMC5 gene.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"Cushing syndrome due to macronodular adrenal hyperplasia","termid":"MONDO:0009049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACTH-independent macronodular adrenal hyperplasia 2","secondary_identifiers":["OMIM:615954","GARD:16034","DOID:0111624","MEDGEN:863240","UMLS:C4014803"],"synonyms":[{"name":"ACTH-independent macronodular adrenal hyperplasia 2","type":"exact"},{"name":"ACTH-independent macronodular adrenal hyperplasia 2, autosomal dominant, somatic mutation","type":"exact"},{"name":"ACTH-independent macronodular adrenal hyperplasia type 2","type":"exact"},{"name":"AIMAH2","type":"related"},{"name":"ARMC5 Cushing syndrome due to macronodular adrenal hyperplasia","type":"exact"},{"name":"Cushing syndrome due to macronodular adrenal hyperplasia caused by mutation in ARMC5","type":"exact"},{"name":"primary macronodular adrenal hyperplasia","type":"related"}],"termid":"MONDO:0014416","xrefs":{"Monarch":{"xref_id":"0014416"}}}


id: GO:0003168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a Purkinje myocyte (also known as cardiac Purkinje fiber cell). These cells are specialized cardiomyocytes that receive signals from the bundle of His and innervate the ventricular cardiac muscle.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"His-Purkinje system cell differentiation","termid":"GO:0060932"},{"relation_name":"part_of","term_name":"Purkinje myocyte development","termid":"GO:0003165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Purkinje myocyte differentiation","synonyms":[{"name":"cardiac Purkinje fiber cell differentiation","type":"exact"}],"termid":"GO:0003168"}


id: MONDO:0100041
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type of trimethylaminuria that occurs as the result of treatment with large doses of dietary precursors of the offending chemical. Symptoms develop when the ability of the liver enzyme (flavin-containing monooxygenase 3) is insufficient to break down (metabolize) the excess trimethylamine.","direct_ancestors":[{"relation_name":"is_a","term_name":"trimethylaminuria","termid":"MONDO:0011182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"secondary trimethylaminuria","termid":"MONDO:0100041","xrefs":{"Monarch":{"xref_id":"0100041"}}}


id: PATO:0001726
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A male receptivity which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"male receptivity","termid":"PATO:0001721"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased male receptivity","synonyms":[{"name":"low male receptivity","type":"exact"}],"termid":"PATO:0001726"}


id: GO:0050798
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a T cell population following activation by an antigenic stimulus.","definition_xrefs":["GOC:add","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell proliferation","termid":"GO:0042098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"activated T cell proliferation","synonyms":[{"name":"activated T lymphocyte proliferation","type":"exact"},{"name":"activated T-cell proliferation","type":"exact"},{"name":"activated T-lymphocyte proliferation","type":"exact"},{"name":"proliferation of activated T cells","type":"exact"}],"termid":"GO:0050798"}


id: MONDO:0957783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited ichthyosis","termid":"MONDO:0015947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ichthyosis with erythrokeratoderma","secondary_identifiers":["UMLS:C5882691","MEDGEN:1852819","OMIM:620507"],"termid":"MONDO:0957783","xrefs":{"Monarch":{"xref_id":"0957783"}}}


id: GO:0006583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of melanin from other compounds, including tyrosine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosine metabolic process","termid":"GO:0006570"},{"relation_name":"is_a","term_name":"melanin biosynthetic process","termid":"GO:0042438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748","GO:0006520"],"is_obsolete":false,"name":"melanin biosynthetic process from tyrosine","synonyms":[{"name":"melanin anabolism from tyrosine","type":"exact"},{"name":"melanin formation from tyrosine","type":"exact"},{"name":"melanin synthesis from tyrosine","type":"exact"}],"termid":"GO:0006583"}


id: MONDO:0004513
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive rhabdomyosarcoma occurring in adults. The neoplasm is characterized by the presence of bizarre round, spindle, and polygonal cells. Clinical presentation includes a rapidly enlarging painful mass usually in the lower extremities.","definition_xrefs":["NCIT:C27369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pleomorphic rhabdomyosarcoma","termid":"MONDO:0017386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adult pleomorphic rhabdomyosarcoma","secondary_identifiers":["MEDGEN:233966","UMLS:C1332211","DOID:8251","ICDO:8901/3"],"synonyms":[{"name":"adult pleomorphic rhabdomyosarcoma","type":"exact"},{"name":"pleomorphic rhabdomyosarcoma of adults","type":"exact"}],"termid":"MONDO:0004513","xrefs":{"Monarch":{"xref_id":"0004513"}}}


id: GO:0075508
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Viral penetration into the host nucleus where a viral capsid enters the host nuclear pore complex (NPC) but remains attached to the pore on the nuclear side. The capsid then disassembles, releasing the viral genome into the nucleoplasm.","definition_xrefs":["PMID:22929056","VZ:989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral penetration into host nucleus","termid":"GO:0075732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"entry of viral genome into host nucleus via retainment of capsid in nuclear pore complex and release of genome into nucleoplasm","synonyms":[{"name":"entry of viral genome into host nucleus via attachment of capsid to nuclear pore complex and release of genome into nucleoplasm","type":"exact"}],"termid":"GO:0075508"}


id: PBO:0031760
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_complex_assembly","termid":"PBO:0031760"}


id: GO:0005601
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex that catalyzes the cleavage of complement components C3 and C5, and acts in the classical pathway of complement activation; consists of one monomer of C2a and one monomer of C4b; C2a is the catalytic subunit, but cannot catalyze cleavage alone.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"extracellular space","termid":"GO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005576","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"classical-complement-pathway C3/C5 convertase complex","termid":"GO:0005601"}


id: MONDO:0011331
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital chylothorax is a rare, potentially life-threatening neonatal condition characterized by the accumulation of chyle within the pleural space leading to respiratory distress, malnutrition and immunological compromise, either immediately after birth or within the first few weeks of life. Congenital chylothorax is the most common cause of pleural effusion in neonates; it can occur primarily due to developmental anomalies of the lymphatic duct or can be associated with chromosomal anomalies (e.g. Noonan syndrome, Turner syndrome and Down syndrome), hydrops fetalis, mediastinal neuroblastoma and other congenital malformations.","definition_xrefs":["Orphanet:264688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pleural disorder","termid":"MONDO:0002037"},{"relation_name":"is_a","term_name":"primary interstitial lung disease specific to childhood","termid":"MONDO:0017015"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital chylothorax","secondary_identifiers":["MEDGEN:87398","ICD9:511.89","GARD:10156","OMIM:603523","SCTID:233646003","UMLS:C0340014","MESH:C535461","icd11.foundation:641475779","DOID:0060646"],"synonyms":[{"name":"chylothorax, congenital","type":"related"},{"name":"hydrothorax, congenital","type":"related"}],"termid":"MONDO:0011331","xrefs":{"Monarch":{"xref_id":"0011331"}}}


id: PBO:0077053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF and HNRNPL related immunoregulatory long non-coding RNA","termid":"PBO:0077053"}


id: PBO:0017683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper transmembrane transporter, meiotic Mfc1","termid":"PBO:0017683"}


id: FYPO:0000533
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic cell cycle arrest in response to pheromone is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormally arrested mitotic cell cycle progression","termid":"FYPO:0000502"},{"relation_name":"is_a","term_name":"decreased mitotic cell cycle arrest in response to pheromone","termid":"FYPO:0000532"},{"relation_name":"is_a","term_name":"normally arrested mitotic cell cycle progression","termid":"FYPO:0001025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000298","FYPO:0000257","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"normal mitotic cell cycle arrest in response to pheromone","synonyms":[{"name":"normal pheromone-induced mitotic cell cycle arrest","type":"exact"},{"name":"pheromone-induced cell cycle arrest: normal","type":"related"}],"termid":"FYPO:0000533"}


id: PBO:0002226
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-consensus branch site","termid":"PBO:0002226"}


id: MONDO:0015260
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Bothriocephalosis is a mammalian cosmopolitan intestinal parasitosis. In addition to non-specific digestive problems (nausea, abdominal pain, lack of appetite), bothriocephalosis provokes an anemia caused by vitamin B12 deficiency that resembles Biermer anemia (anemia characterized by abnormally large red blood cells).","definition_xrefs":["Orphanet:128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Cestode infectious disease","termid":"MONDO:0042488"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphyllobothriasis","secondary_identifiers":["MEDGEN:3858","EFO:0007238","GARD:942","ICD9:123.4","UMLS:C0012561","DOID:10075","NCIT:C128391","icd11.foundation:1679215344","MedDRA:10013029","ICD10CM:B70.0","MESH:D004169","SCTID:187151009"],"synonyms":[{"name":"Bothriocephalosis","type":"exact"},{"name":"Diphyllobothrium caused disease or disorder","type":"exact"},{"name":"Diphyllobothrium disease or disorder","type":"exact"},{"name":"Diphyllobothrium infection","type":"exact"},{"name":"Diphyllobothrium infectious disease","type":"exact"},{"name":"fish tapeworm","type":"exact"}],"termid":"MONDO:0015260","xrefs":{"Monarch":{"xref_id":"0015260"}}}


id: PBO:0060180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucin 1, cell surface associated","termid":"PBO:0060180"}


id: FYPO:0002860
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of polynucleotide uridylyltransferase activity is abnormal.","definition_xrefs":["PMID:17449726","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000661","FYPO:0000654","FYPO:0001985"],"is_obsolete":false,"name":"abnormal poly(U) polymerase activity","synonyms":[{"name":"abnormal RNA uridylyltransferase activity","type":"exact"},{"name":"abnormal polynucleotide uridylyltransferase activity","type":"exact"}],"termid":"FYPO:0002860"}


id: GO:0018118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-cysteine by covalent addition of glutathione to form peptidyl-L-cysteine glutathione disulfide.","definition_xrefs":["RESID:AA0229"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-L-cysteine glutathione disulfide biosynthetic process from peptidyl-cysteine (obsolete GO:0018118)","synonyms":[{"name":"peptidyl-L-cysteine glutathione disulfide anabolism from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-L-cysteine glutathione disulfide formation from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-L-cysteine glutathione disulfide synthesis from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-L-cysteine glutathione disulphide biosynthesis from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-L-cysteine glutathione disulphide biosynthetic process from peptidyl-cysteine","type":"exact"}],"termid":"GO:0018118"}


id: PBO:0074626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 22C","termid":"PBO:0074626"}


id: MONDO:0000255
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mycosis that involves subcutaneous tissue. There are three general types of subcutaneous mycoses: chromoblastomycosis, mycetoma, and sporotrichosis.","direct_ancestors":[{"relation_name":"is_a","term_name":"cutaneous mycosis","termid":"MONDO:0000254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subcutaneous mycosis","secondary_identifiers":["MEDGEN:1684692","DOID:0050135","UMLS:C5230306"],"synonyms":[{"name":"subcutaneous mycosis","type":"exact"}],"termid":"MONDO:0000255","xrefs":{"Monarch":{"xref_id":"0000255"}}}


id: PBO:0048011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM domain containing 8 pseudogene 1","termid":"PBO:0048011"}


id: PBO:0050562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HRG and FETUB antisense RNA 1","termid":"PBO:0050562"}


id: PBO:0069791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1077, pseudogene","termid":"PBO:0069791"}


id: PBO:0088795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial intermediate peptidase Oct1","termid":"PBO:0088795"}


id: MONDO:0014408
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any megalencephaly-polymicrogyria-postaxial polydactyly-hydrocephalus syndrome in which the cause of the disease is a mutation in the CCND2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"megalencephaly-polymicrogyria-postaxial polydactyly-hydrocephalus syndrome","termid":"MONDO:0019375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"}],"interesting_parent_ids":["MONDO:0020022"],"is_obsolete":false,"name":"megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3","secondary_identifiers":["GARD:18079","OMIM:615938","UMLS:C4014742","MEDGEN:863179"],"synonyms":[{"name":"CCND2 megalencephaly-polymicrogyria-postaxial polydactyly-hydrocephalus syndrome","type":"exact"},{"name":"MPPH3","type":"related"},{"name":"megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3","type":"exact"},{"name":"megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome type 3","type":"exact"},{"name":"megalencephaly-polymicrogyria-postaxial polydactyly-hydrocephalus syndrome caused by mutation in CCND2","type":"exact"}],"termid":"MONDO:0014408","xrefs":{"Monarch":{"xref_id":"0014408"}}}


id: PBO:0116250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF2458 family conserved fungal protein","termid":"PBO:0116250"}


id: GO:0140036
data:
  {"annotated_genes":["SJAG_04574"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061649"}]},"cv_name":"molecular_function","definition":"A molecular adaptor recognizes and binds a target protein containing a ubiquitination modification and brings the target protein into contact with another protein to allow those proteins to function in a coordinated way.","definition_xrefs":["PMID:26060076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein reader activity","termid":"GO:0140035"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0060090","GO:0003674","GO:0030674"],"is_obsolete":false,"name":"ubiquitin-modified protein reader activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ubiquitin-dependent protein binding","type":"exact"}],"termid":"GO:0140036","terms_by_termid":{"GO:0061649":null}}


id: GO:0051152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of smooth muscle cell differentiation.","definition_xrefs":["CL:0000192","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of muscle cell differentiation","termid":"GO:0051149"},{"relation_name":"is_a","term_name":"regulation of smooth muscle cell differentiation","termid":"GO:0051150"},{"relation_name":"positively_regulates","term_name":"smooth muscle cell differentiation","termid":"GO:0051145"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of smooth muscle cell differentiation","synonyms":[{"name":"activation of smooth muscle cell differentiation","type":"narrow"},{"name":"stimulation of smooth muscle cell differentiation","type":"narrow"},{"name":"up regulation of smooth muscle cell differentiation","type":"exact"},{"name":"up-regulation of smooth muscle cell differentiation","type":"exact"},{"name":"upregulation of smooth muscle cell differentiation","type":"exact"}],"termid":"GO:0051152"}


id: PBO:0065179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolyl-tRNA synthetase associated domain containing 1, pseudogene","termid":"PBO:0065179"}


id: GO:0042874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which D-glucuronate, the D-enantiomer of glucuronate, is transported across a lipid bilayer, from one side of a membrane to the other.","definition_xrefs":["GOC:mah","GOC:jl","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronate transmembrane transport","termid":"GO:0015738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"D-glucuronate transmembrane transport","synonyms":[{"name":"D-glucuronate transport","type":"related"}],"termid":"GO:0042874"}


id: GO:0008616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of queuosines, a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside biosynthetic process","termid":"GO:0042455"},{"relation_name":"is_a","term_name":"queuosine metabolic process","termid":"GO:0046116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"queuosine biosynthetic process","synonyms":[{"name":"queuosine anabolism","type":"exact"},{"name":"queuosine biosynthesis","type":"exact"},{"name":"queuosine formation","type":"exact"},{"name":"queuosine synthesis","type":"exact"}],"termid":"GO:0008616"}


id: PBO:0017460
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-host_of","termid":"PBO:0017460"}


id: MONDO:0004549
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extrinsic allergic alveolitis caused by inhalation of cork dust containing the antigens produced by the fungus Penicillium glabrum. The symptoms include dyspnea, wheezing cough, fever and asthenia.","definition_xrefs":["DOID:840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fungal lung infectious disease","termid":"MONDO:0005766"},{"relation_name":"is_a","term_name":"hypersensitivity pneumonitis","termid":"MONDO:0017853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"cork-handlers' disease","secondary_identifiers":["UMLS:C0152108","SCTID:13394002","ICD9:495.3","MEDGEN:508891"],"synonyms":[{"name":"Suberosis","type":"exact"},{"name":"cork worker's lung","type":"exact"},{"name":"cork workers lung","type":"exact"},{"name":"cork-handlers' disease or lung","type":"exact"},{"name":"cork-handlers' lung","type":"exact"}],"termid":"MONDO:0004549","xrefs":{"Monarch":{"xref_id":"0004549"}}}


id: PBO:0000606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRO1 domain protein (predicted)","termid":"PBO:0000606"}


id: PBO:0062697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily C member 1 pseudogene","termid":"PBO:0062697"}


id: GO:0035278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An RNA interference pathway in which microRNAs (miRNAs) block the translation of target mRNAs into proteins. Once incorporated into a RNA-induced silencing complex (RISC), a miRNA will typically mediate repression of translation if the miRNA imperfectly base-pairs with the 3' untranslated regions of target mRNAs.","definition_xrefs":["PMID:15196554","PMID:14744438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translation","termid":"GO:0017148"},{"relation_name":"is_a","term_name":"miRNA-mediated post-transcriptional gene silencing","termid":"GO:0035195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"miRNA-mediated gene silencing by inhibition of translation","synonyms":[{"name":"down regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"down-regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"downregulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"gene silencing by miRNA, negative regulation of translation","type":"exact"},{"name":"inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"miRNA mediated inhibition of translation","type":"exact"},{"name":"miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"negative regulation of translation involved in gene silencing by microRNA","type":"exact"}],"termid":"GO:0035278"}


id: SO:0000577
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of chromosome where the spindle fibers attach during mitosis and meiosis.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal_structural_element","termid":"SO:0000628"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere","secondary_identifiers":["http://en.wikipedia.org/wiki/Centromere"],"synonyms":[{"name":"INSDC_feature:centromere","type":"exact"}],"termid":"SO:0000577"}


id: FYPO:0001243
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to thiamine is higher than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased RNA level during cellular response to thiamine","synonyms":[{"name":"increased RNA accumulation during cellular response to thiamine","type":"related"},{"name":"increased RNA level during cellular response to thiamine during mitotic cell cycle","type":"related"},{"name":"increased RNA level during cellular response to thiamine during vegetative growth","type":"exact"},{"name":"increased RNA level during cellular response to vitamin B1","type":"exact"},{"name":"increased mRNA level during cellular response to thiamine","type":"narrow"},{"name":"increased transcript level during cellular response to thiamine","type":"exact"}],"termid":"FYPO:0001243"}


id: MONDO:0020396
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Anomaly of the tricuspid valve chordae is a rare, congenital anomaly of the tricuspid subvalvular apparatus characterized by aberrant tendinous chords, which insert at the clear zone of the leaflet instead of its free edge and connect to the endocardium instead of the papillary muscles. Resulting tethering of one or more tricuspid leaflets leads to their impaired mobility and tricuspid regurgitation. Association with other congenital cardiac anomalies has been reported.","definition_xrefs":["Orphanet:99055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital tricuspid malformation","termid":"MONDO:0020289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"anomaly of the tricuspid valve chordae","secondary_identifiers":["MEDGEN:757566","UMLS:C3165162","GARD:19623"],"termid":"MONDO:0020396","xrefs":{"Monarch":{"xref_id":"0020396"}}}


id: PBO:0068494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 78, pseudogene","termid":"PBO:0068494"}


id: MONDO:0044843
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dystonic disorder","termid":"MONDO:0003441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"}],"interesting_parent_ids":["MONDO:0003441"],"is_obsolete":false,"name":"torsion dystonia","secondary_identifiers":["MEDGEN:3941","UMLS:C0013423","SCTID:431034009"],"synonyms":[{"name":"torsion dystonia","type":"exact"}],"termid":"MONDO:0044843","xrefs":{"Monarch":{"xref_id":"0044843"}}}


id: MONDO:0009412
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition that develops in people who do not consume an adequate amount of vitamin C in their diet. Although scurvy is relatively rare in the United States, it continues to be a problem in malnourished populations around the world (such as impoverished, underdeveloped third world countries). Early features of the condition include general weakness, fatigue and aching limbs. If left untreated, more serious problems can develop such as anemia, gum disease, and skin hemorrhages. Symptoms generally develop after at least 3 months of severe or total vitamin C deficiency. Scurvy can be cured with vitamin C supplements taken by mouth. Once recovery is complete, dietary modifications to ensure the 'recommended daily intake' of vitamin C is reached will prevent relapse. Except in the case of severe dental disease, permanent damage from scurvy does not usually occur.","direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin deficiency disorder","termid":"MONDO:0024298"},{"relation_name":"is_a","term_name":"carbohydrate metabolism disease","termid":"MONDO:0037792"},{"relation_name":"is_a","term_name":"disorder of organic acid metabolism","termid":"MONDO:0045022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"scurvy","secondary_identifiers":["NCIT:C35010","EFO:1001169","DOID:13577","MEDGEN:20684","DOID:13724","icd11.foundation:708602629","OMIM:240400","ICD9:267","UMLS:C0036474","MESH:D001206","ICD10CM:E54","MedDRA:10047623","SCTID:76169001","MESH:D012614","MedDRA:10039768"],"synonyms":[{"name":"Gulo, nonfunctional","type":"related"},{"name":"L-gulonolactone oxidase pseudogene","type":"related"},{"name":"L-gulonolactone oxidase, nonfunctional","type":"related"},{"name":"ascorbic acid deficiency","type":"exact"},{"name":"deficiency of vitamin C","type":"exact"},{"name":"hypoascorbemia","type":"related"},{"name":"scorbutus","type":"related"},{"name":"scurvy","type":"exact"},{"name":"vitamin C deficiency","type":"exact"},{"name":"vitamin C, inability to synthesise","type":"related"},{"name":"vitamin C, inability to synthesize","type":"related"}],"termid":"MONDO:0009412","xrefs":{"Monarch":{"xref_id":"0009412"}}}


id: PBO:0066749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 47","termid":"PBO:0066749"}


id: MONDO:1012831
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any progressive retinal atrophy that occurs in the Miniature Schnauzer breed of dog and is characterized by an average age of onset of seven years, mild clinical signs, and slow progression.","definition_xrefs":["PMID:32150541"],"direct_ancestors":[{"relation_name":"is_a","term_name":"progressive retinal atrophy, dog","termid":"MONDO:1012226"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progressive retinal atrophy, Miniature Schnauzer, dog","secondary_identifiers":["OMIA:002253-9615"],"termid":"MONDO:1012831","xrefs":{"Monarch":{"xref_id":"1012831"}}}


id: GO:0046635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of alpha-beta T cell activation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of alpha-beta T cell activation","termid":"GO:0046634"},{"relation_name":"is_a","term_name":"positive regulation of T cell activation","termid":"GO:0050870"},{"relation_name":"positively_regulates","term_name":"alpha-beta T cell activation","termid":"GO:0046631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of alpha-beta T cell activation","synonyms":[{"name":"activation of alpha-beta T cell activation","type":"narrow"},{"name":"positive regulation of alpha-beta T lymphocyte activation","type":"exact"},{"name":"positive regulation of alpha-beta T-cell activation","type":"exact"},{"name":"positive regulation of alpha-beta T-lymphocyte activation","type":"exact"},{"name":"stimulation of alpha-beta T cell activation","type":"narrow"},{"name":"up regulation of alpha-beta T cell activation","type":"exact"},{"name":"up-regulation of alpha-beta T cell activation","type":"exact"},{"name":"upregulation of alpha-beta T cell activation","type":"exact"}],"termid":"GO:0046635"}


id: GO:0070542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus.","definition_xrefs":["GOC:lp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to fatty acid","termid":"GO:0070542"}


id: MONDO:0006232
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A painless, well circumscribed tumor arising in soft tissue, usually of the upper and lower extremities. Morphologically, it is characterized by a multinodular growth pattern. The cellular infiltrate is composed of mononuclear round or oval cells and multinucleated osteoclast-like giant cells, in a rich vascular stroma. It rarely metastasizes.","definition_xrefs":["NCIT:C49107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant giant cell tumor","termid":"MONDO:0002402"},{"relation_name":"is_a","term_name":"sarcoma","termid":"MONDO:0005089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"giant cell tumor of soft tissue","secondary_identifiers":["MEDGEN:87264","EFO:1000281","ICDO:9251/1","UMLS:C0334553"],"synonyms":[{"name":"GCT-ST","type":"exact"},{"name":"Osteoclastoma of soft tissue","type":"exact"},{"name":"giant cell tumor of soft tissue","type":"exact"}],"termid":"MONDO:0006232","xrefs":{"Monarch":{"xref_id":"0006232"}}}


id: PBO:0029718
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_processing","termid":"PBO:0029718"}


id: PBO:0089170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calreticulin/calnexin homolog","termid":"PBO:0089170"}


id: PBO:0027440
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_in_stationary_phase","termid":"PBO:0027440"}


id: GO:0034044
data:
  {"annotated_genes":["SJAG_00916","SJAG_02240"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[71737,77094],"is_not":false,"summary":null,"term":"GO:0034044"}]},"cv_name":"cellular_component","definition":"A protein complex that forms a coat structure on vesicles involved in exocytosis of proteins from the trans-Golgi network to the cell surface; in Saccharomyces, the complex contains Chs5p, Chs6p, and Chs6p paralogues.","definition_xrefs":["PMID:16498409","PMID:17000877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"},{"relation_name":"part_of","term_name":"trans-Golgi network transport vesicle","termid":"GO:0030140"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00916":null,"SJAG_02240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991","GO:0005794","GO:0031410"],"is_obsolete":false,"name":"exomer complex","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0034044","terms_by_termid":{"GO:0034044":null}}


id: PBO:0074517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA A9","termid":"PBO:0074517"}


id: MONDO:0014108
data:
  {"annotated_genes":["SJAG_02556"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84823],"is_not":false,"summary":null,"term":"MONDO:0014108"}]},"cv_name":"mondo","definition":"Any Fanconi anemia in which the cause of the disease is a mutation in the ERCC4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fanconi anemia","termid":"MONDO:0019391"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02556":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0021190"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005066","MONDO:0005046","MONDO:0021190","MONDO:0002280"],"is_obsolete":false,"name":"Fanconi anemia complementation group Q","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3808988","GARD:15934","OMIM:615272","MEDGEN:815318","DOID:0111093"],"synonyms":[{"name":"ERCC4 Fanconi anaemia","type":"exact"},{"name":"ERCC4 Fanconi anemia","type":"exact"},{"name":"FANCQ","type":"exact"},{"name":"Fanconi Anemia, complementation group type Q","type":"exact"},{"name":"Fanconi anaemia caused by mutation in ERCC4","type":"exact"},{"name":"Fanconi anaemia complementation group type Q","type":"exact"},{"name":"Fanconi anemia caused by mutation in ERCC4","type":"exact"},{"name":"Fanconi anemia complementation group type Q","type":"exact"},{"name":"Fanconi anemia, complementation group Q","type":"related"}],"termid":"MONDO:0014108","terms_by_termid":{"MONDO:0014108":null},"xrefs":{"Monarch":{"xref_id":"0014108"}}}


id: PBO:0052087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch repeat and BTB domain containing 3","termid":"PBO:0052087"}


id: MONDO:0056804
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system organ benign neoplasm","termid":"MONDO:0000628"},{"relation_name":"is_a","term_name":"peripheral nervous system neoplasm","termid":"MONDO:0001406"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign neoplasm of peripheral nervous system","secondary_identifiers":["DOID:0080320","MEDGEN:199653","UMLS:C0751427"],"termid":"MONDO:0056804","xrefs":{"Monarch":{"xref_id":"0056804"}}}


id: PBO:0083189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized gene YJL225C","termid":"PBO:0083189"}


id: PBO:0026876
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_meiotic_DNA_double-strand_break_clipping","termid":"PBO:0026876"}


id: GO:0030660
data:
  {"annotated_genes":["SJAG_02234","SJAG_04517","SJAG_02482","SJAG_04070","SJAG_00379","SJAG_04609","SJAG_02282","SJAG_02160","SJAG_00192","SJAG_04391","SJAG_04474","SJAG_04002","SJAG_01025","SJAG_01809","SJAG_04565","SJAG_04569","SJAG_01508"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[62072,112574,77588,112787],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030121"},{"annotations":[58626,65332],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030130"},{"annotations":[70667,64101,78178,79686,106920,98251,93025,73343,77843],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030126"},{"annotations":[95841,97557],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030663"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding a vesicle associated with the Golgi apparatus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"Golgi-associated vesicle","termid":"GO:0005798"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00192":null,"SJAG_00379":null,"SJAG_01025":null,"SJAG_01508":null,"SJAG_01809":null,"SJAG_02160":null,"SJAG_02234":null,"SJAG_02282":null,"SJAG_02482":null,"SJAG_04002":null,"SJAG_04070":null,"SJAG_04391":null,"SJAG_04474":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04569":null,"SJAG_04609":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737"],"is_obsolete":false,"name":"Golgi-associated vesicle membrane","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Golgi vesicle membrane","type":"related"}],"termid":"GO:0030660","terms_by_termid":{"GO:0030121":null,"GO:0030126":null,"GO:0030130":null,"GO:0030663":null}}


id: PBO:0116688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF like GTPase 17A","termid":"PBO:0116688"}


id: GO:0019365
data:
  {"annotated_genes":["SJAG_01359","SJAG_04693","SJAG_00957","SJAG_04467","SJAG_01500","SJAG_03298"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90444,112879,70483,90866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034356"},{"annotations":[79937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[88807,90445,109409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019358"}]},"cv_name":"biological_process","definition":"Any process that generates a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base, from derivatives of them without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridine nucleotide biosynthetic process","termid":"GO:0019363"},{"relation_name":"is_a","term_name":"nucleotide salvage","termid":"GO:0043173"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00957":null,"SJAG_01359":null,"SJAG_01500":null,"SJAG_03298":null,"SJAG_04467":null,"SJAG_04693":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"pyridine nucleotide salvage","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"pyridine nucleotide cycling","type":"exact"}],"termid":"GO:0019365","terms_by_termid":{"GO:0019358":null,"GO:0034355":null,"GO:0034356":null}}


id: GO:0032892
data:
  {"annotated_genes":["SJAG_05346","SJAG_04920","SJAG_03591","SJAG_02605","SJAG_00991"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89716],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035432"},{"annotations":[98679,110333,91537,93131],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905589"},{"annotations":[93132,91538,98680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905534"},{"annotations":[93133],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905626"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of organic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organic acid transport","termid":"GO:0032890"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"positively_regulates","term_name":"organic acid transport","termid":"GO:0015849"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_02605":null,"SJAG_03591":null,"SJAG_04920":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of organic acid transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of organic acid transport","type":"narrow"},{"name":"stimulation of organic acid transport","type":"narrow"},{"name":"up regulation of organic acid transport","type":"exact"},{"name":"up-regulation of organic acid transport","type":"exact"},{"name":"upregulation of organic acid transport","type":"exact"}],"termid":"GO:0032892","terms_by_termid":{"GO:0035432":null,"GO:1905534":null,"GO:1905589":null,"GO:1905626":null}}


id: PBO:0074094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 26 member 9","termid":"PBO:0074094"}


id: PBO:0060088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 35","termid":"PBO:0060088"}


id: PBO:0054040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1376","termid":"PBO:0054040"}


id: SO:0000551
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA.","direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptional_cis_regulatory_region","termid":"SO:0001055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyA_signal_sequence","synonyms":[{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:polyA_signal_sequence","type":"exact"},{"name":"poly(A) signal","type":"exact"},{"name":"polyA signal sequence","type":"exact"},{"name":"polyadenylation termination signal","type":"exact"}],"termid":"SO:0000551"}


id: PBO:0068951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 195, pseudogene","termid":"PBO:0068951"}


id: GO:1990635
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The dendrite of the dendritic tree that is closest to the neuronal cell body (the soma).","definition_xrefs":["PMID:16899232","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendrite","termid":"GO:0030425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"proximal dendrite","termid":"GO:1990635"}


id: GO:0070061
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the D- or L-enantiomer of fructose, the ketohexose arabino-hex-2-ulose.","definition_xrefs":["GOC:mah","CHEBI:28757","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide binding","termid":"GO:0048029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"fructose binding","termid":"GO:0070061"}


id: MONDO:0008247
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Robin sequence-oligodactyly syndrome is a rare, genetic, developmental defect during embryogenesis syndrome characterized by Robin sequence (i.e. severe micrognathia, retroglossia and U-shaped cleft of the posterior palate) associated with pre- and postaxial oligodactyly. Facial features can include a narrow face and narrow lower dental arch. Clinodactyly, absent phalanx, metacarpal fusions, and hypoplastic carpals have also been reported. There have been no further descriptions in the literature since 1986.","definition_xrefs":["Orphanet:3104"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Robin sequence-oligodactyly syndrome","secondary_identifiers":["UMLS:C1868309","GARD:4729","MEDGEN:358176","OMIM:172880","MESH:C535688"],"synonyms":[{"name":"Pierre Robin sequence-oligodactyly syndrome","type":"exact"},{"name":"Pierre Robin syndrome and oligodactyly","type":"related"},{"name":"Robin sequence and oligodactyly","type":"related"}],"termid":"MONDO:0008247","xrefs":{"Monarch":{"xref_id":"0008247"}}}


id: GO:0106385
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process which produces a dIMP from derivatives of it, without de novo synthesis.","definition_xrefs":["PMID:8692979"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine deoxyribonucleoside monophosphate biosynthetic process","termid":"GO:0009171"},{"relation_name":"is_a","term_name":"purine deoxyribonucleotide salvage","termid":"GO:0106381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"dIMP salvage","termid":"GO:0106385"}


id: PATO:0001413
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Angular_velocity"],"direct_ancestors":[{"relation_name":"is_a","term_name":"velocity","termid":"PATO:0002242"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angular velocity","termid":"PATO:0001413"}


id: GO:0098905
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a cardiac muscle cell of the bundle of His. This typically occurs via modulation of the activity or expression of voltage-gated ion channels.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardiac muscle cell action potential","termid":"GO:0098901"},{"relation_name":"regulates","term_name":"bundle of His cell action potential","termid":"GO:0086043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of bundle of His cell action potential","synonyms":[{"name":"regulation of bundle of His cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0098905"}


id: GO:0009897
data:
  {"annotated_genes":["SJAG_01835","SJAG_00310","SJAG_02093","SJAG_00784","SJAG_01029","SJAG_04789","SJAG_01086","SJAG_04209","SJAG_02173","SJAG_00340","SJAG_02260","SJAG_00254","SJAG_00109","SJAG_04685","SJAG_05272","SJAG_04851","SJAG_01290","SJAG_04238","SJAG_02435","SJAG_00096","SJAG_03640","SJAG_04875","SJAG_04850","SJAG_03204","SJAG_00415","SJAG_02916"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89711,89909,91375,93844,94630,94642,94643,94644,95068,102038,102045,102046,103792,106354,107569,112821,113526,114161,114266,114547,115393,116062,117135,117575,118131,118566],"is_not":false,"summary":null,"term":"GO:0009897"}]},"cv_name":"cellular_component","definition":"The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.","definition_xrefs":["GOC:dos","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"side of membrane","termid":"GO:0098552"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"},{"relation_name":"part_of","term_name":"cell surface","termid":"GO:0009986"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00096":null,"SJAG_00109":null,"SJAG_00254":null,"SJAG_00310":null,"SJAG_00340":null,"SJAG_00415":null,"SJAG_00784":null,"SJAG_01029":null,"SJAG_01086":null,"SJAG_01290":null,"SJAG_01835":null,"SJAG_02093":null,"SJAG_02173":null,"SJAG_02260":null,"SJAG_02435":null,"SJAG_02916":null,"SJAG_03204":null,"SJAG_03640":null,"SJAG_04209":null,"SJAG_04238":null,"SJAG_04685":null,"SJAG_04789":null,"SJAG_04850":null,"SJAG_04851":null,"SJAG_04875":null,"SJAG_05272":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0009986"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0009986"],"is_obsolete":false,"name":"external side of plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"external leaflet of plasma membrane","type":"exact"},{"name":"juxtamembrane","type":"broad"},{"name":"outer surface of cytoplasmic membrane","type":"exact"}],"termid":"GO:0009897","terms_by_termid":{"GO:0009897":null}}


id: PBO:0031219
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_intracellular_protein_transport","termid":"PBO:0031219"}


id: SO:0000003
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"G-quartets are unusual nucleic acid structures consisting of a planar arrangement where each guanine is hydrogen bonded by hoogsteen pairing to another guanine in the quartet.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_secondary_structure","termid":"SO:0000002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G_quartet","secondary_identifiers":["http://en.wikipedia.org/wiki/G-quadruplex"],"synonyms":[{"name":"G quartet","type":"exact"},{"name":"G tetrad","type":"exact"},{"name":"G-quadruplex","type":"exact"},{"name":"G-quartet","type":"exact"},{"name":"G-tetrad","type":"exact"},{"name":"G_quadruplex","type":"exact"},{"name":"guanine tetrad","type":"exact"}],"termid":"SO:0000003"}


id: GO:0004774
data:
  {"annotated_genes":["SJAG_01524","SJAG_03813"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75156,71454],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004775"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: succinate + CoA + nucleotide triphosphate = nucleotide diphosphate + phosphate + succinyl-CoA.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01524":null,"SJAG_03813":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"succinate-CoA ligase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0004774","terms_by_termid":{"GO:0004775":null}}


id: PBO:0058220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4510","termid":"PBO:0058220"}


id: PBO:0027063
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_actomyosin_contractile_ring","termid":"PBO:0027063"}


id: PBO:0065223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 5","termid":"PBO:0065223"}


id: MONDO:0013664
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"46,XY complete gonadal dysgenesis","termid":"MONDO:0010765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"46,XY disorder of sex development due to testicular 17,20-desmolase deficiency","secondary_identifiers":["GARD:17752","OMIM:614279","Orphanet:443087","SCTID:49013001","MEDGEN:333416","MESH:C564109","DOID:0111773","UMLS:C1839840"],"synonyms":[{"name":"46,XY sex reversal 8","type":"related"},{"name":"46,XY sex reversal type 8","type":"exact"},{"name":"46XY sex reversal 8","type":"exact"},{"name":"46XY sex reversal 8, modifier of","type":"exact"},{"name":"SRXY8","type":"related"},{"name":"male pseudohermaphroditism due to deficiency of testicular 17,20-desmolase","type":"related"}],"termid":"MONDO:0013664","xrefs":{"Monarch":{"xref_id":"0013664"}}}


id: GO:0034848
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: naphthyl-2-oxomethyl-succinyl-CoA + CoASH = 2-naphthoyl-CoA + succinyl-CoA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete naphthyl-2-oxomethyl-succinyl-CoA succinyl transferase activity (obsolete GO:0034848)","termid":"GO:0034848"}


id: PR:O94282
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cytoplasmic tRNA 2-thiolation protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03335","PANTHER:PTHR11807:SF3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic tRNA 2-thiolation protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G5.03","secondary_identifiers":["UniProtKB:O94282"],"synonyms":[{"name":"Spom972h-CTU1","type":"exact"},{"name":"cytoplasmic tRNA adenylyltransferase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94282"}


id: PBO:0046210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 3","termid":"PBO:0046210"}


id: FYPO:0007857
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the localization of a protein to the spindle midzone is normal (i.e. indistinguishable from wild type) during the first meiotic nuclear division. The meiotic spindle midzone is the area in the center of the meiotic spindle where the spindle microtubules from opposite poles overlap.","definition_xrefs":["GO:1990385","PomBase:mah","GO:1903096","PMID:34346498"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to meiotic spindle during meiosis I","termid":"FYPO:0007750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to meiotic spindle midzone during meiosis I","synonyms":[{"name":"normal protein localisation to meiotic spindle midzone during meiosis I","type":"exact"},{"name":"normal protein localization to meiosis I spindle midzone","type":"exact"},{"name":"normal protein localization to spindle midzone during first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0007857"}


id: GO:0097725
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of two methyl groups to lysine at position 79 of the histone.","definition_xrefs":["GOC:hbye","PMID:27541139"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K79 dimethylation (obsolete GO:0097725)","synonyms":[{"name":"histone H3 K79 dimethylation","type":"exact"},{"name":"histone lysine H3 K79 dimethylation","type":"exact"}],"termid":"GO:0097725"}


id: PBO:0038618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiotensin I converting enzyme 3, pseudogene","termid":"PBO:0038618"}


id: PBO:0051837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunity related GTPase M","termid":"PBO:0051837"}


id: MONDO:0010441
data:
  {"annotated_genes":["SJAG_02855"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86700],"is_not":false,"summary":null,"term":"MONDO:0010441"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02855":null},"genotype_count":0,"is_obsolete":false,"name":"CK syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:251383","UMLS:C3151781","GARD:17210","MEDGEN:463131","DOID:0111898","OMIM:300831"],"synonyms":[{"name":"CK syndrome","type":"exact"},{"name":"CK syndrome, X-linked recessive","type":"exact"},{"name":"X-linked intellectual disability-microcephaly-cortical malformation-thin habitus syndrome","type":"exact"},{"name":"intellectual disability, X-linked, with thin body habitus and cortical malformation","type":"related"},{"name":"mental retardation, X-linked, with thin body habitus and cortical malformation","type":"related"}],"termid":"MONDO:0010441","terms_by_termid":{"MONDO:0010441":null},"xrefs":{"Monarch":{"xref_id":"0010441"}}}


id: FYPO:0008002
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed during mating in which a cell lyses, i.e. the plasma membrane ruptures and cytoplasm is lost, during the process of cell fusion that occurs during mating. Note that in fission yeast cell lysis, the integrity of the cell wall is also compromised.","definition_xrefs":["PMID:35673994","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell lysis","termid":"FYPO:0002488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"cell lysis during mating","synonyms":[{"name":"cell lysis during cell fusion","type":"related"},{"name":"cell lysis during cellular fusion","type":"related"}],"termid":"FYPO:0008002"}


id: PBO:0028898
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_pear-shaped_vegetative_cell","termid":"PBO:0028898"}


id: GO:1905692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of an endoplasmic reticulum into its constituent components.","definition_xrefs":["GO_REF:0000079","GOC:pr","GOC:TermGenie","GOC:autophagy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum organization","termid":"GO:0007029"},{"relation_name":"is_a","term_name":"organelle disassembly","termid":"GO:1903008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum disassembly","synonyms":[{"name":"ER disassembly","type":"exact"}],"termid":"GO:1905692"}


id: PBO:0059260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L24","termid":"PBO:0059260"}


id: FYPO:0001238
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing staurosporine.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0000003","FYPO:0000257","FYPO:0000139","FYPO:0002060","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on staurosporine","synonyms":[{"name":"normal cell population growth in presence of staurosporine","type":"exact"},{"name":"normal cell population growth on staurosporine","type":"exact"},{"name":"normal cellular response to staurosporine","type":"related"},{"name":"normal vegetative cell population growth on staurosporine","type":"exact"}],"termid":"FYPO:0001238"}


id: MONDO:0032791
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Coffin-Siris syndrome","termid":"MONDO:0015452"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coffin-Siris syndrome 10","secondary_identifiers":["UMLS:C4760583","OMIM:618506","GARD:16358","MEDGEN:1683634","DOID:0112371"],"synonyms":[{"name":"COFFIN-SIRIS SYNDROME 10","type":"related"},{"name":"CSS10","type":"related"}],"termid":"MONDO:0032791","xrefs":{"Monarch":{"xref_id":"0032791"}}}


id: PR:Q9P7R4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin-conjugating enzyme E2 H that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR24067:SF19","OMA:SCHPO03894","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-conjugating enzyme E2 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC211.07c","secondary_identifiers":["UniProtKB:Q9P7R4"],"synonyms":[{"name":"E2 ubiquitin-conjugating enzyme 8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-UBE2H","type":"exact"},{"name":"ubiquitin carrier protein 8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-protein ligase 8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7R4"}


id: MONDO:0012924
data:
  {"annotated_genes":["SJAG_04204","SJAG_04168"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86553,86554],"is_not":false,"summary":null,"term":"MONDO:0012924"}]},"cv_name":"mondo","definition":"Any Diamond-Blackfan anemia in which the cause of the disease is a mutation in the RPS17 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Diamond-Blackfan anemia","termid":"MONDO:0015253"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04168":null,"SJAG_04204":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"Diamond-Blackfan anemia 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0111890","NCIT:C176913","UMLS:C2675860","MEDGEN:393906","GARD:15561","OMIM:612527","MESH:C567281"],"synonyms":[{"name":"DBA4","type":"related"},{"name":"Diamond-Blackfan Anaemia type 4","type":"exact"},{"name":"Diamond-Blackfan Anemia type 4","type":"exact"},{"name":"Diamond-Blackfan anaemia caused by mutation in RPS17","type":"exact"},{"name":"Diamond-Blackfan anemia 4","type":"exact"},{"name":"Diamond-Blackfan anemia caused by mutation in RPS17","type":"exact"},{"name":"RPS17 Diamond-Blackfan anaemia","type":"exact"},{"name":"RPS17 Diamond-Blackfan anemia","type":"exact"}],"termid":"MONDO:0012924","terms_by_termid":{"MONDO:0012924":null},"xrefs":{"Monarch":{"xref_id":"0012924"}}}


id: PBO:0045106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diencephalon/mesencephalon homeobox 1","termid":"PBO:0045106"}


id: MOD:01351
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to a nitrated L-tryptophan.","definition_xrefs":["PubMed:8839040","PubMed:9252331","Unimod:354#W","OMSSA:85"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrosylation","termid":"MOD:00461"},{"relation_name":"is_a","term_name":"modified L-tryptophan residue","termid":"MOD:00918"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitrated L-tryptophan","synonyms":[{"name":"Nitro","type":"related"},{"name":"Oxidation to nitro","type":"related"},{"name":"nitrow","type":"exact"}],"termid":"MOD:01351"}


id: PBO:0075481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPATA31 subfamily C member 1","termid":"PBO:0075481"}


id: GO:1990052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a lipid from the endoplasmic reticulum (ER) to the chloroplast.","definition_xrefs":["PMID:18689504"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular lipid transport","termid":"GO:0032365"},{"relation_name":"is_a","term_name":"endoplasmic reticulum to chloroplast transport","termid":"GO:1901965"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"ER to chloroplast lipid transport","synonyms":[{"name":"ER to chloroplast lipid trafficking","type":"exact"},{"name":"endoplasmic reticulum to chloroplast lipid transport","type":"exact"}],"termid":"GO:1990052"}


id: MONDO:0700272
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary cancer predisposition due to variation(s) in the PALB2 gene. Pathogenic germline variation in PALB2 confers an autosomal dominant predisposition to tumor formation at multiple primary sites, including breast cancer, ovarian cancer, and pancreatic cancer.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PALB2-related cancer predisposition","termid":"MONDO:0700272","xrefs":{"Monarch":{"xref_id":"0700272"}}}


id: PBO:0056964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"miR-23a/27a/24-2 cluster host gene","termid":"PBO:0056964"}


id: GO:0097322
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a 7SK small nuclear RNA (7SK snRNA).","definition_xrefs":["PMID:21853533","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA binding","termid":"GO:0017069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"7SK snRNA binding","synonyms":[{"name":"7SK small nuclear RNA binding","type":"exact"}],"termid":"GO:0097322"}


id: PBO:0066082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid receptor responder 2 pseudogene 10","termid":"PBO:0066082"}


id: MONDO:0021485
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that involves the iris.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iris neoplasm","termid":"MONDO:0021224"},{"relation_name":"is_a","term_name":"benign neoplasm of eye","termid":"MONDO:0021454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"benign neoplasm of iris","secondary_identifiers":["MEDGEN:87560","icd11.foundation:549962833","UMLS:C0346374","NCIT:C4555","ICD9:224.0","SCTID:189151003"],"synonyms":[{"name":"benign iris neoplasm","type":"exact"},{"name":"benign iris tumor","type":"exact"},{"name":"benign iris tumour","type":"exact"},{"name":"benign neoplasm of the iris","type":"exact"},{"name":"benign tumor of iris","type":"exact"},{"name":"benign tumor of the iris","type":"exact"},{"name":"benign tumour of iris","type":"exact"},{"name":"benign tumour of the iris","type":"exact"},{"name":"iris benign neoplasm","type":"exact"}],"termid":"MONDO:0021485","xrefs":{"Monarch":{"xref_id":"0021485"}}}


id: GO:0033970
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-oxo-3-ureidopropanoate + H2O = H+ + malonate + urea.","definition_xrefs":["RHEA:17361","EC:3.5.1.95"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"N-malonylurea hydrolase activity","secondary_identifiers":["KEGG_REACTION:R07629","MetaCyc:3.5.1.95-RXN"],"synonyms":[{"name":"3-oxo-3-ureidopropanoate amidohydrolase (urea- and malonate-forming) activity","type":"related"},{"name":"ureidomalonase activity","type":"related"}],"termid":"GO:0033970"}


id: PBO:0052522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 35","termid":"PBO:0052522"}


id: MOD:00830
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to an N-methyl-L-proline.","definition_xrefs":["PubMed:3127388","RESID:AA0419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monomethylated proline","termid":"MOD:01417"},{"relation_name":"is_a","term_name":"N-methylated proline","termid":"MOD:01462"},{"relation_name":"is_a","term_name":"alpha-amino monomethylated residue","termid":"MOD:01680"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N-methyl-L-proline","synonyms":[{"name":"(S)-1-methylpyrrolidine-2-carboxylic acid","type":"exact"},{"name":"1-methylpyrrolidine-2-carboxylic acid","type":"exact"},{"name":"MOD_RES N-methylproline","type":"exact"},{"name":"N-methyl-L-proline","type":"exact"},{"name":"N-methylated L-proline","type":"exact"},{"name":"NMePro","type":"exact"},{"name":"hygric acid","type":"exact"}],"termid":"MOD:00830"}


id: MONDO:0020564
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete well-differentiated liposarcoma (obsolete MONDO:0020564)","termid":"MONDO:0020564","xrefs":{"Monarch":{"xref_id":"0020564"}}}


id: PBO:0062775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 56 subfamily A member 3","termid":"PBO:0062775"}


id: GO:0120055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Migration of ingested material along the length of the small intestine.","definition_xrefs":["GOC:sl","PMID:15890336"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal motility","termid":"GO:0120054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"small intestinal transit","synonyms":[{"name":"small bowel transit","type":"exact"},{"name":"small intestine transit","type":"exact"}],"termid":"GO:0120055"}


id: GO:0060588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of lipoprotein lipid oxidation. Lipoprotein lipid oxidation is the modification of a lipoprotein by oxidation of the lipid group.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lipoprotein oxidation","termid":"GO:0034443"},{"relation_name":"is_a","term_name":"negative regulation of lipid metabolic process","termid":"GO:0045833"},{"relation_name":"is_a","term_name":"regulation of lipoprotein lipid oxidation","termid":"GO:0060587"},{"relation_name":"negatively_regulates","term_name":"lipoprotein lipid oxidation","termid":"GO:0034439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"negative regulation of lipoprotein lipid oxidation","termid":"GO:0060588"}


id: GO:0090455
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of ornithine into the vacuole across the vacuolar membrane.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"ornithine transport","termid":"GO:0015822"},{"relation_name":"is_a","term_name":"vacuolar transmembrane transport","termid":"GO:0034486"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"ornithine transmembrane import into vacuole","synonyms":[{"name":"vacuolar ornithine import","type":"related"}],"termid":"GO:0090455"}


id: PBO:0080157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"valosin containing protein interacting protein 1","termid":"PBO:0080157"}


id: PBO:0026898
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_phosphorylation_during_nitrogen_starvation","termid":"PBO:0026898"}


id: PBO:0077352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 92","termid":"PBO:0077352"}


id: GO:0007543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that mediates the interactions between somatic cells and gonadal cells that ultimately results in the specification of sexual status of the organism.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell communication","termid":"GO:0007154"},{"relation_name":"part_of","term_name":"primary sex determination, germ-line","termid":"GO:0007542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sex determination, somatic-gonadal interaction","synonyms":[{"name":"sex determination, somatic/gonadal interaction","type":"exact"}],"termid":"GO:0007543"}


id: PBO:0089727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannose-6-phosphate isomerase Mpi1","termid":"PBO:0089727"}


id: MONDO:0008096
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nevus flammeus of nape of neck","secondary_identifiers":["OMIM:163100","MEDGEN:437278","UMLS:C2697447","MESH:C567524"],"synonyms":[{"name":"Unna Nevus","type":"related"},{"name":"erythema nuchae","type":"related"},{"name":"nevus flammeus of nape of neck","type":"exact"}],"termid":"MONDO:0008096","xrefs":{"Monarch":{"xref_id":"0008096"}}}


id: PBO:0060981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nerve growth factor receptor","termid":"PBO:0060981"}


id: MONDO:0016707
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Astroblastoma is a very rare glial neoplasm of the central nervous system, most often with an intra-axial peripheral supratentorial location in one hemisphere of the frontal or parietal lobes and usually presenting in infants and young adults with symptoms of vomiting, loss of consciousness, epileptic seizures and headaches.","definition_xrefs":["Orphanet:251679"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"astrocytoma (excluding glioblastoma)","termid":"MONDO:0019781"},{"relation_name":"is_a","term_name":"glioma","termid":"MONDO:0021042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"astroblastoma","secondary_identifiers":["icd11.foundation:96344074","GARD:10635","ICDO:9430/3","NCIT:C4324","ONCOTREE:ASTB","MEDGEN:90811","UMLS:C0334587","DOID:7305","icd11.foundation:2011571705"],"synonyms":[{"name":"AstB","type":"related"},{"name":"astroblastoma","type":"exact"},{"name":"astroblastoma (morphologic abnormality)","type":"exact"},{"name":"cerebral astroblastoma","type":"related"}],"termid":"MONDO:0016707","xrefs":{"Monarch":{"xref_id":"0016707"}}}


id: PBO:0081564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 488","termid":"PBO:0081564"}


id: PBO:0063848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein inhibitor of activated STAT 1","termid":"PBO:0063848"}


id: GO:1900490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity (obsolete GO:1900490)","synonyms":[{"name":"activation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity","type":"broad"},{"name":"activation of HMG-CoA reductase activity","type":"broad"},{"name":"activation of hydroxymethylglutaryl-CoA reductase (NADPH) activity","type":"narrow"},{"name":"positive regulation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity","type":"broad"},{"name":"positive regulation of HMG-CoA reductase activity","type":"broad"},{"name":"up regulation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity","type":"broad"},{"name":"up regulation of HMG-CoA reductase activity","type":"broad"},{"name":"up regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity","type":"exact"},{"name":"up-regulation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity","type":"broad"},{"name":"up-regulation of HMG-CoA reductase activity","type":"broad"},{"name":"up-regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity","type":"exact"},{"name":"upregulation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase activity","type":"broad"},{"name":"upregulation of HMG-CoA reductase activity","type":"broad"},{"name":"upregulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity","type":"exact"}],"termid":"GO:1900490"}


id: PBO:0088390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-V, dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase","termid":"PBO:0088390"}


id: MONDO:0017271
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal ichthyosis syndrome with prominent hair abnormalities (obsolete MONDO:0017271)","secondary_identifiers":["Orphanet:281222"],"termid":"MONDO:0017271","xrefs":{"Monarch":{"xref_id":"0017271"}}}


id: GO:1903826
data:
  {"annotated_genes":["SJAG_03256","SJAG_02716","SJAG_03400"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63278,98624],"is_not":false,"summary":null,"term":"GO:1903826"},{"annotations":[103623],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090518"}]},"cv_name":"biological_process","definition":"The directed movement of L-arginine across a membrane.","definition_xrefs":["PMID:22822152","PMID:8195186","PMID:18357653","GO_REF:0000069","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"L-alpha-amino acid transmembrane transport","termid":"GO:1902475"},{"relation_name":"is_a","term_name":"basic amino acid transmembrane transport","termid":"GO:1990822"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02716":null,"SJAG_03256":null,"SJAG_03400":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"L-arginine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0015809","GO:1903400","GO:1902023","GO:0043091"],"synonyms":[{"name":"L-arginine import","type":"narrow"},{"name":"L-arginine transport","type":"broad"},{"name":"L-arginine uptake","type":"narrow"},{"name":"arginine transmembrane transport","type":"related"},{"name":"arginine transport","type":"broad"}],"termid":"GO:1903826","terms_by_termid":{"GO:0090518":null,"GO:1903826":null}}


id: PBO:0088812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall alpha-1,3-glucan synthase Mok11","termid":"PBO:0088812"}


id: MOD:00578
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other","definition_xrefs":["Unimod:255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetaldehyde +28","synonyms":[{"name":"Acetaldehyde +28","type":"related"},{"name":"Delta:H(4)C(2)","type":"related"}],"termid":"MOD:00578"}


id: PBO:0089135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial endonuclease family, related to holliday junction resolvases, implicated in DNA or tRNA metabolism","termid":"PBO:0089135"}


id: FYPO:0004775
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-serine measured in the vacuole is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular serine level","termid":"FYPO:0001728"},{"relation_name":"is_a","term_name":"increased level of substance in vacuole","termid":"FYPO:0001730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased vacuolar serine level","synonyms":[{"name":"increased level of serine in vacuole","type":"exact"},{"name":"increased vacuolar L-serine level","type":"exact"},{"name":"increased vacuolar serine level during mitotic cell cycle","type":"related"},{"name":"increased vacuolar serine level during vegetative growth","type":"exact"}],"termid":"FYPO:0004775"}


id: PBO:0028533
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_secondary_cell_septum_biogenesis","termid":"PBO:0028533"}


id: PBO:0087939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translational repressor of the mitochondrial ATP6/8 mRNA; homozygous diploid deletion strain has a sporulation defect characterized by elevated dityrosine in the soluble fraction; expression induced by calcium shortage","termid":"PBO:0087939"}


id: MONDO:0016439
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Elastoderma is a rare condition that affects the skin. People affected by elastoderma generally have increased laxity of skin covering a specific area of the body. Decreased recoil of the skin has also been reported. Although any part of the body can be affected, the skin of the neck and extremities (arms and legs, especially at the elbows and/or knees) are most commonly involved. The exact underlying cause is currently unknown; however, it generally occurs sporadically in people with no family history of the condition. There is no standard therapy available for elastoderma. Some cases have been treated with surgical excision (removal of affected skin), but hyperlaxity of skin often returns following the surgery.","direct_ancestors":[{"relation_name":"is_a","term_name":"dermis disorder","termid":"MONDO:0021154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"elastoderma","secondary_identifiers":["SCTID:238832003","GARD:12716","UMLS:C0406555","ICD9:701.8","MEDGEN:590504","Orphanet:228240","icd11.foundation:1880397739"],"termid":"MONDO:0016439","xrefs":{"Monarch":{"xref_id":"0016439"}}}


id: PBO:0082152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Adapter protein for pexophagy and the Cvt targeting pathway; directs receptor-bound cargo to the phagophore assembly site (PAS) for packaging into vesicles; required for recruiting other proteins to the PAS; recruits Dnm1p to facilitate fission of mitochondria that are destined for removal by mitophagy","termid":"PBO:0082152"}


id: FYPO:0006736
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the proportion of cells in the population remains viable after entering stationary phase does not change in the presence of tschimganine. Normally, wild-type cell populations survive longer in the presence of tschimganine than in its absence.","definition_xrefs":["PomBase:mah","PMID:29900664"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"stationary phase viability unaffected by tschimganine","synonyms":[{"name":"chronological lifespan unaffected by tschimganine","type":"related"},{"name":"loss of chronological lifespan extension by tschimganine","type":"related"},{"name":"loss of stationary phase viability extension in presence of tschimganine","type":"exact"},{"name":"stationary phase viability unaffected by TMN","type":"exact"}],"termid":"FYPO:0006736"}


id: PBO:0058794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7515","termid":"PBO:0058794"}


id: GO:0018095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of one or more alpha-linked glutamyl units to the gamma carboxyl group of peptidyl-glutamic acid.","definition_xrefs":["RESID:AA0202"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-glutamic acid modification","termid":"GO:0018200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein polyglutamylation","termid":"GO:0018095"}


id: PBO:0074438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 39","termid":"PBO:0074438"}


id: PBO:0066534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 1","termid":"PBO:0066534"}


id: PBO:0084238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Import and assembly protein in mitochondrial intermembrane space; component of MIA pathway which mediates import and oxidative folding of substrates including small proteins containing twin cysteine motifs; acts in concert with Erv1p, which oxidizes the cysteine residues of Mia40p to comprise a disulfide relay system that catalyzes import; also mediates folding of Atp23p via a chaperone-like activity; forms a dimer that binds iron-sulfur cluster in vitro","termid":"PBO:0084238"}


id: PBO:0056742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meteorin like, glial cell differentiation regulator","termid":"PBO:0056742"}


id: PBO:0059608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 20","termid":"PBO:0059608"}


id: GO:1902081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion import into sarcoplasmic reticulum.","definition_xrefs":["GOC:BHF","PMID:8349590","GOC:rl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular transport","termid":"GO:0032387"},{"relation_name":"is_a","term_name":"negative regulation of calcium ion transport","termid":"GO:0051926"},{"relation_name":"is_a","term_name":"regulation of calcium ion import into sarcoplasmic reticulum","termid":"GO:1902080"},{"relation_name":"negatively_regulates","term_name":"calcium ion import into sarcoplasmic reticulum","termid":"GO:1990036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of calcium ion import into sarcoplasmic reticulum","synonyms":[{"name":"down regulation of calcium ion import into sarcoplasmic reticulum","type":"exact"},{"name":"down-regulation of calcium ion import into sarcoplasmic reticulum","type":"exact"},{"name":"downregulation of calcium ion import into sarcoplasmic reticulum","type":"exact"},{"name":"inhibition of calcium ion import into sarcoplasmic reticulum","type":"narrow"}],"termid":"GO:1902081"}


id: PBO:0068787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 24, pseudogene","termid":"PBO:0068787"}


id: PBO:0090688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial lysine-tRNA ligase Msk1","termid":"PBO:0090688"}


id: PBO:0089206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin-related substrate adaptor Aly3","termid":"PBO:0089206"}


id: PBO:0060948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NFIB antisense RNA 1","termid":"PBO:0060948"}


id: MONDO:0003332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An ovarian mature teratoma characterized by the presence of aberrant thyroid tissue with morphologic changes identical to thyroid carcinoma. Patients may present with abdominal mass and unusual symptoms due to thyrotoxicosis, or with Meigs syndrome (ascites and pleural effusion).","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"teratoma with malignant transformation","termid":"MONDO:0006444"},{"relation_name":"is_a","term_name":"struma ovarii","termid":"MONDO:0006980"},{"relation_name":"is_a","term_name":"immature ovarian teratoma","termid":"MONDO:0018369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant struma ovarii","secondary_identifiers":["ICDO:9090/3","MEDGEN:137777","UMLS:C0334525","DOID:5208","NCIT:C4291"],"synonyms":[{"name":"struma ovarii, malignant","type":"exact"},{"name":"struma ovarii, malignant (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0003332","xrefs":{"Monarch":{"xref_id":"0003332"}}}


id: PBO:0064198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"placenta enriched 1","termid":"PBO:0064198"}


id: PR:Q10218
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppc89 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle pole body protein ppc89 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.11c","synonyms":[{"name":"Spom972h-ppc89","type":"exact"},{"name":"meiotically up-regulated gene 127 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10218"}


id: GO:0010220
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or induces the rate of the vernalization response, by which induction of flowering is normally caused by extended exposure to cold temperatures.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vernalization response","termid":"GO:0010219"},{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"positively_regulates","term_name":"vernalization response","termid":"GO:0010048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vernalization response","synonyms":[{"name":"activation of vernalization response","type":"narrow"},{"name":"stimulation of vernalization response","type":"narrow"},{"name":"up regulation of vernalization response","type":"exact"},{"name":"up-regulation of vernalization response","type":"exact"},{"name":"upregulation of vernalization response","type":"exact"}],"termid":"GO:0010220"}


id: PBO:0074038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 23","termid":"PBO:0074038"}


id: MONDO:0014399
data:
  {"annotated_genes":["SJAG_04190"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86072],"is_not":false,"summary":null,"term":"MONDO:0014399"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"progeroid syndrome","termid":"MONDO:0015333"},{"relation_name":"excluded_subClassOf","term_name":"premature aging syndrome","termid":"MONDO:0019303"},{"relation_name":"is_a","term_name":"ataxia-telangiectasia-like disorder","termid":"MONDO:0011457"},{"relation_name":"is_a","term_name":"DNA repair disease","termid":"MONDO:0021190"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04190":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0021190"}],"interesting_parent_ids":["MONDO:0021190","MONDO:0005559","MONDO:0005066"],"is_obsolete":false,"name":"ataxia-telangiectasia-like disorder 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:438134","GARD:17736","DOID:0081385","OMIM:615919","MEDGEN:863113","UMLS:C4014676"],"synonyms":[{"name":"ATLD2","type":"related"},{"name":"PCNA-related progressive neurodegenerative photosensitivity syndrome","type":"related"},{"name":"ataxia-telangiectasia-like disorder 2","type":"exact"},{"name":"ataxia-telangiectasia-like disorder type 2","type":"exact"}],"termid":"MONDO:0014399","terms_by_termid":{"MONDO:0014399":null},"xrefs":{"Monarch":{"xref_id":"0014399"}}}


id: GO:0035696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a monocyte from the blood vessels into the surrounding tissue.","definition_xrefs":["GOC:BHF","CL:0000576","PMID:10657654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular extravasation","termid":"GO:0045123"},{"relation_name":"is_a","term_name":"mononuclear cell migration","termid":"GO:0071674"},{"relation_name":"is_a","term_name":"myeloid leukocyte migration","termid":"GO:0097529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"monocyte extravasation","termid":"GO:0035696"}


id: PBO:0005376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIID complex subunit 8 (predicted)","termid":"PBO:0005376"}


id: GO:0035830
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving palmatine, a berberine alkaloid found in many plants.","definition_xrefs":["PMID:25285405","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoquinoline alkaloid metabolic process","termid":"GO:0033076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"palmatine metabolic process","synonyms":[{"name":"palmatine metabolism","type":"exact"}],"termid":"GO:0035830"}


id: GO:0052530
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the resistance gene-dependent defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of symbiont resistance gene-dependent defense response (obsolete GO:0052530)","synonyms":[{"name":"positive regulation by organism of defense response in symbiont by specific elicitors","type":"exact"},{"name":"positive regulation by organism of pathogen-race/symbiont plant cultivar-specific resistance in symbiont","type":"exact"},{"name":"positive regulation by organism of symbiont gene-for-gene resistance","type":"exact"},{"name":"positive regulation by organism of symbiont resistance gene-dependent defense response","type":"exact"}],"termid":"GO:0052530"}


id: PBO:0013800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase Ada1","termid":"PBO:0013800"}


id: GO:0098694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of synaptic vesicle budding from presynaptic endocytic zone membrane.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle organization","termid":"GO:0033043"},{"relation_name":"regulates","term_name":"synaptic vesicle budding from presynaptic endocytic zone membrane","termid":"GO:0016185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"regulation of synaptic vesicle budding from presynaptic endocytic zone membrane","termid":"GO:0098694"}


id: MONDO:0001466
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"superficial keratitis","termid":"MONDO:0001465"},{"relation_name":"is_a","term_name":"keratoconjunctivitis","termid":"MONDO:0004768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"punctate epithelial keratoconjunctivitis","secondary_identifiers":["SCTID:416069001","ICD9:370.21","UMLS:C1562761","DOID:12197","MEDGEN:736733"],"synonyms":[{"name":"Thygeson superficial punctate keratitis","type":"exact"},{"name":"Thygeson's superficial punctate keratitis","type":"exact"},{"name":"punctate keratitis","type":"exact"}],"termid":"MONDO:0001466","xrefs":{"Monarch":{"xref_id":"0001466"}}}


id: PBO:0046073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 subunit M","termid":"PBO:0046073"}


id: PBO:0046575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 17","termid":"PBO:0046575"}


id: PBO:0072395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 like","termid":"PBO:0072395"}


id: MONDO:0011383
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, primary immunodeficiency with an autosomal dominant pattern of inheritance but incomplete penetrance. It is caused by a mutation in the CASP10 (caspase-10) gene that leads to defective Fas-induced apoptosis. Disruption of Fas-induced apoptosis impairs lymphocyte homeostasis and immune tolerance. Characteristic laboratory findings include an increase in circulating, double-negative (CD4-/CD8-) T cells in the setting of immune-mediated anemia, thrombocytopenia and neutropenia. Clinical signs present in childhood include fatigue, pallor, bruising, hepatosplenomegaly and chronic, non-malignant, non-infectious lymphadenopathy. The clinical course is influenced by a strong association with other autoimmune disorders and an increased risk for developing Hodgkin and non-Hodgkin lymphoma.","definition_xrefs":["NCIT:C39576"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune lymphoproliferative syndrome","termid":"MONDO:0017979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune lymphoproliferative syndrome type 2A","secondary_identifiers":["GARD:15361","DOID:0110115","MESH:C565833","OMIM:603909","MEDGEN:349065","UMLS:C1858968"],"synonyms":[{"name":"ALPS-CASP10","type":"exact"},{"name":"ALPS2A","type":"exact"},{"name":"CASP10 autoimmune lymphoproliferative syndrome","type":"exact"},{"name":"autoimmune lymphoproliferative syndrome caused by mutation in CASP10","type":"exact"},{"name":"autoimmune lymphoproliferative syndrome type IIA","type":"exact"},{"name":"autoimmune lymphoproliferative syndrome, type 2","type":"related"},{"name":"autoimmune lymphoproliferative syndrome, type 2A","type":"related"},{"name":"autoimmune lymphoproliferative syndrome, type II","type":"exact"},{"name":"autoimmune lymphoproliferative syndrome, type IIA","type":"related"},{"name":"autoimmune lymphoproliferative syndrome-CASP10 variant","type":"exact"},{"name":"type 2 ALPS","type":"exact"},{"name":"type 2 autoimmune lymphoproliferative syndrome","type":"exact"}],"termid":"MONDO:0011383","xrefs":{"Monarch":{"xref_id":"0011383"}}}


id: GO:1901225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of regulation of transcription from RNA polymerase II promoter involved in heart development.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transcription from RNA polymerase II promoter involved in heart development (obsolete GO:1901225)","synonyms":[{"name":"down regulation of global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"down regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"down regulation of global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"down regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"down regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"down regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"down regulation of regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"down regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"down regulation of regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"down regulation of regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"down regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"down regulation of regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter involved in heart development","type":"exact"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"down regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"},{"name":"down-regulation of global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"down-regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"down-regulation of global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"down-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"down-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"down-regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"down-regulation of regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"down-regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"down-regulation of regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"down-regulation of regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"down-regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"down-regulation of regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter involved in heart development","type":"exact"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"down-regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"},{"name":"downregulation of global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"downregulation of global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"downregulation of global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"downregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"downregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"downregulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"downregulation of regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"downregulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"downregulation of regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"downregulation of regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"downregulation of regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"downregulation of regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter involved in heart development","type":"exact"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"downregulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"},{"name":"inhibition of global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"inhibition of global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"inhibition of global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"inhibition of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"inhibition of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"inhibition of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"inhibition of regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"inhibition of regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"inhibition of regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"inhibition of regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"inhibition of regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"inhibition of regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter involved in heart development","type":"narrow"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"inhibition of regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"},{"name":"negative regulation of global transcription regulation from Pol II promoter involved in cardiac development","type":"related"},{"name":"negative regulation of global transcription regulation from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"negative regulation of global transcription regulation from Pol II promoter involved in heart development","type":"related"},{"name":"negative regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"negative regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"related"},{"name":"negative regulation of regulation of gene-specific transcription from RNA polymerase II promoter involved in heart development","type":"related"},{"name":"negative regulation of regulation of global transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"negative regulation of regulation of global transcription from Pol II promoter involved in dorsal vessel development","type":"related"},{"name":"negative regulation of regulation of global transcription from Pol II promoter involved in heart development","type":"related"},{"name":"negative regulation of regulation of transcription from Pol II promoter involved in cardiac development","type":"related"},{"name":"negative regulation of regulation of transcription from Pol II promoter involved in dorsal vessel development","type":"narrow"},{"name":"negative regulation of regulation of transcription from Pol II promoter involved in heart development","type":"exact"},{"name":"negative regulation of regulation of transcription from RNA polymerase II promoter involved in cardiac development","type":"related"},{"name":"negative regulation of regulation of transcription from RNA polymerase II promoter involved in dorsal vessel development","type":"narrow"},{"name":"negative regulation of regulation of transcription from RNA polymerase II promoter, global involved in cardiac development","type":"related"},{"name":"negative regulation of regulation of transcription from RNA polymerase II promoter, global involved in dorsal vessel development","type":"related"},{"name":"negative regulation of regulation of transcription from RNA polymerase II promoter, global involved in heart development","type":"related"},{"name":"negative regulation of transcription from RNA polymerase II promoter involved in heart development","type":"exact"}],"termid":"GO:1901225"}


id: PBO:0082903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cys-Gly metallo-di-peptidase; forms a complex with Dug2p and Dug3p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p); human homolog CNDP2 can complement yeast dug1 mutant","termid":"PBO:0082903"}


id: PBO:0042912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofilin 2","termid":"PBO:0042912"}


id: PBO:0083804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein that binds ribosomal protein L11; required for nuclear export of the 60S pre-ribosomal subunit during ribosome biogenesis; localizes to the nucleolus and in foci along nuclear periphery; cooperates with Ebp2p and Mps3p to mediate telomere clustering by binding Sir4p, but is not involved in telomere tethering; mouse homolog shows altered expression in Huntington's disease model mice","termid":"PBO:0083804"}


id: PBO:0048122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fucosyltransferase 3 (Lewis blood group)","termid":"PBO:0048122"}


id: GO:1902907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a proteasome storage granule into its constituent components.","definition_xrefs":["PMID:23690178","GO_REF:0000079","GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle disassembly","termid":"GO:1903008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"proteasome storage granule disassembly","synonyms":[{"name":"PSG disassembly","type":"related"}],"termid":"GO:1902907"}


id: PBO:0086124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for flavinylation of Sdh1p; binds to Sdh1p and promotes FAD cofactor attachment, which is necessary for succinate dehydrogenase (SDH) complex assembly and activity; mutations in human ortholog PGL2 are associated with neuroendocrine tumors (paraganglioma)","termid":"PBO:0086124"}


id: FYPO:0000681
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A sporulation phenotype that results in the formation of an ascus that has abnormal morphology and contains two diploid spores.","definition_xrefs":["PMID:11156975","PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sporulation resulting in formation of ascus with fewer than four spores","termid":"FYPO:0003066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000121"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000121","FYPO:0000002"],"is_obsolete":false,"name":"abnormal sporulation resulting in formation of two-spore ascus","synonyms":[{"name":"abnormal ascospore formation resulting in formation of two-spore ascus","type":"exact"},{"name":"abnormal sporulation resulting in formation of two-spore asci","type":"exact"}],"termid":"FYPO:0000681"}


id: PBO:0026851
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_chromatin_at_ncRNA_gene","termid":"PBO:0026851"}


id: PBO:0077997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor associated factor 1","termid":"PBO:0077997"}


id: PBO:0041102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basigin (Ok blood group)","termid":"PBO:0041102"}


id: MONDO:0021543
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangioma that involves the gingiva.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemangioma","termid":"MONDO:0006500"},{"relation_name":"is_a","term_name":"benign neoplasm of gum","termid":"MONDO:0021491"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemangioma of gingiva","secondary_identifiers":["ICD9:228.09","MEDGEN:108426","NCIT:C4831","UMLS:C0582885","SCTID:304990002"],"synonyms":[{"name":"angioma of gingiva","type":"exact"},{"name":"angioma of gum","type":"exact"},{"name":"angioma of the gingiva","type":"exact"},{"name":"angioma of the gum","type":"exact"},{"name":"gingiva hemangioma","type":"exact"},{"name":"gingival angioma","type":"exact"},{"name":"gingival hemangioma","type":"exact"},{"name":"gum angioma","type":"exact"},{"name":"gum hemangioma","type":"exact"},{"name":"hemangioma of gum","type":"exact"},{"name":"hemangioma of the gingiva","type":"exact"},{"name":"hemangioma of the gum","type":"exact"}],"termid":"MONDO:0021543","xrefs":{"Monarch":{"xref_id":"0021543"}}}


id: GO:0004714
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate.","definition_xrefs":["GOC:mah","EC:2.7.10.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein tyrosine kinase activity","termid":"GO:0004713"},{"relation_name":"is_a","term_name":"transmembrane receptor protein kinase activity","termid":"GO:0019199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0016740","GO:0140096","GO:0003824","GO:0016301","GO:0003674","GO:0004672","GO:0038023"],"is_obsolete":false,"name":"transmembrane receptor protein tyrosine kinase activity","secondary_identifiers":["Reactome:R-HSA-8950757","Reactome:R-HSA-8987012","Reactome:R-HSA-8950591","Reactome:R-HSA-8950485","Reactome:R-HSA-8987070","Reactome:R-HSA-8987040","Reactome:R-HSA-8950405","Reactome:R-HSA-8950364","Reactome:R-HSA-8983424","Reactome:R-HSA-8987129","Reactome:R-HSA-8987202","Reactome:R-HSA-169905","Reactome:R-HSA-177930","Reactome:R-HSA-8950354","Reactome:R-HSA-8983309","Reactome:R-HSA-8986985","Reactome:R-HSA-8986994","Reactome:R-HSA-8987150","Reactome:R-HSA-8950453","Reactome:R-HSA-8982163","Reactome:R-HSA-6784324","Reactome:R-HSA-74711","Reactome:R-HSA-8983371","Reactome:R-HSA-166544","Reactome:R-HSA-8950537","Reactome:R-HSA-8853792","Reactome:R-HSA-8950269","Reactome:R-HSA-8950423","Reactome:R-HSA-8987255","Reactome:R-HSA-8987042","Reactome:R-HSA-8987084","Reactome:R-HSA-198295","Reactome:R-HSA-8986995","Reactome:R-HSA-8987096","Reactome:R-HSA-74742","Reactome:R-HSA-8852552","Reactome:R-HSA-167683","Reactome:R-HSA-167019","Reactome:R-HSA-8950340","Reactome:R-HSA-8983300","Reactome:R-HSA-8987141","Reactome:R-HSA-8987179","Reactome:R-HSA-177933"],"synonyms":[{"name":"receptor protein tyrosine kinase activity","type":"related"},{"name":"receptor protein-tyrosine kinase activity","type":"related"}],"termid":"GO:0004714"}


id: GO:0031646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a neurophysiological process.","definition_xrefs":["GOC:mah","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nervous system process","termid":"GO:0031644"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"nervous system process","termid":"GO:0050877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of nervous system process","synonyms":[{"name":"activation of neurological process","type":"narrow"},{"name":"positive regulation of neurological process","type":"exact"},{"name":"positive regulation of neurological system process","type":"exact"},{"name":"positive regulation of neurophysiological process","type":"exact"},{"name":"stimulation of neurological process","type":"narrow"},{"name":"up regulation of neurological process","type":"exact"},{"name":"up-regulation of neurological process","type":"exact"},{"name":"upregulation of neurological process","type":"exact"}],"termid":"GO:0031646"}


id: GO:1900843
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of monodictyphenone biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone biosynthetic process","termid":"GO:0010566"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"monodictyphenone biosynthetic process","termid":"GO:1900815"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"regulation of monodictyphenone biosynthetic process","synonyms":[{"name":"regulation of monodictyphenone anabolism","type":"exact"},{"name":"regulation of monodictyphenone biosynthesis","type":"exact"},{"name":"regulation of monodictyphenone formation","type":"exact"},{"name":"regulation of monodictyphenone synthesis","type":"exact"}],"termid":"GO:1900843"}


id: PBO:0038817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 21","termid":"PBO:0038817"}


id: PBO:0044302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 type A pseudogene 5","termid":"PBO:0044302"}


id: GO:0016268
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc or Core 1) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc.","definition_xrefs":["PMID:33775405","GOC:pr","GOC:mah","PMID:10580130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycan processing","termid":"GO:0016266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006486"}],"interesting_parent_ids":["GO:0008150","GO:0006486"],"is_obsolete":false,"name":"core 2 O-glycan biosynthetic process","synonyms":[{"name":"O-glycan processing, core 2","type":"exact"},{"name":"core 2 O-glycan biosynthesis","type":"exact"}],"termid":"GO:0016268"}


id: PBO:0042307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD24 molecule pseudogene 1","termid":"PBO:0042307"}


id: GO:1902076
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lateral motor column neuron migration.","definition_xrefs":["GOC:TermGenie","GOC:yaf","PMID:20711475"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of motor neuron migration","termid":"GO:1905483"},{"relation_name":"regulates","term_name":"lateral motor column neuron migration","termid":"GO:0097477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lateral motor column neuron migration","termid":"GO:1902076"}


id: GO:0070841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an inclusion body.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"inclusion body assembly","termid":"GO:0070841"}


id: PBO:0025440
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetylcytidine at positions 1297 & 1815","termid":"PBO:0025440"}


id: GO:0045100
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A type of intermediate filament.","definition_xrefs":["ISBN:0815316194"],"gene_count":0,"genotype_count":0,"name":"obsolete desmin (obsolete GO:0045100)","synonyms":[{"name":"desmin","type":"exact"}],"termid":"GO:0045100"}


id: GO:1901188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of ephrin receptor signaling pathway.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of ephrin receptor signaling pathway","termid":"GO:1901187"},{"relation_name":"negatively_regulates","term_name":"ephrin receptor signaling pathway","termid":"GO:0048013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of ephrin receptor signaling pathway","synonyms":[{"name":"down regulation of Eph receptor signaling pathway","type":"exact"},{"name":"down regulation of Eph receptor signalling pathway","type":"exact"},{"name":"down regulation of ephrin receptor signaling pathway","type":"exact"},{"name":"down-regulation of Eph receptor signaling pathway","type":"exact"},{"name":"down-regulation of Eph receptor signalling pathway","type":"exact"},{"name":"down-regulation of ephrin receptor signaling pathway","type":"exact"},{"name":"downregulation of Eph receptor signaling pathway","type":"exact"},{"name":"downregulation of Eph receptor signalling pathway","type":"exact"},{"name":"downregulation of ephrin receptor signaling pathway","type":"exact"},{"name":"inhibition of Eph receptor signaling pathway","type":"exact"},{"name":"inhibition of Eph receptor signalling pathway","type":"exact"},{"name":"inhibition of ephrin receptor signaling pathway","type":"narrow"},{"name":"negative regulation of Eph receptor signaling pathway","type":"exact"},{"name":"negative regulation of Eph receptor signalling pathway","type":"exact"}],"termid":"GO:1901188"}


id: PR:O94528
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A multidrug transporter MdfA that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caffeine resistance protein 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC609.04","secondary_identifiers":["UniProtKB:O94528"],"synonyms":[{"name":"Spom972h-cmr","type":"exact"}],"termid":"PR:O94528"}


id: GO:0070820
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A secretory granule that contains cathepsin and gelatinase and is readily exocytosed upon cell activation; found primarily in mature neutrophil cells.","definition_xrefs":["GOC:mah","GOC:rl","PMID:12070036","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule","termid":"GO:0030141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"tertiary granule","synonyms":[{"name":"gelatinase granule","type":"exact"}],"termid":"GO:0070820"}


id: GO:0051950
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of the directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate) into a neuron or glial cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of amino acid uptake involved in synaptic transmission","termid":"GO:0051943"},{"relation_name":"is_a","term_name":"regulation of gamma-aminobutyric acid uptake involved in transmission of nerve impulse","termid":"GO:0051947"},{"relation_name":"positively_regulates","term_name":"gamma-aminobutyric acid reuptake","termid":"GO:0051936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of gamma-aminobutyric acid uptake involved in transmission of nerve impulse","synonyms":[{"name":"activation of gamma-aminobutyric acid uptake during transmission of nerve impulse","type":"narrow"},{"name":"positive regulation of 4-aminobutyrate reuptake","type":"exact"},{"name":"positive regulation of 4-aminobutyrate uptake during transmission of nerve impulse","type":"exact"},{"name":"positive regulation of GABA reuptake","type":"exact"},{"name":"positive regulation of GABA uptake during transmission of nerve impulse","type":"exact"},{"name":"positive regulation of gamma-aminobutyric acid reuptake","type":"exact"},{"name":"positive regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse","type":"related"},{"name":"positive regulation of gamma-aminobutyric acid uptake involved in conduction of nerve impulse","type":"exact"},{"name":"stimulation of gamma-aminobutyric acid uptake during transmission of nerve impulse","type":"narrow"},{"name":"up regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse","type":"exact"},{"name":"up-regulation of gamma-aminobutyric acid uptake during transmission of nerve impulse","type":"exact"},{"name":"upregulation of gamma-aminobutyric acid uptake during transmission of nerve impulse","type":"exact"}],"termid":"GO:0051950"}


id: PBO:0046595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K3 member 5","termid":"PBO:0046595"}


id: GO:0021953
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the central nervous system.","definition_xrefs":["GOC:jid","GOC:cls","GOC:dgh","GOC:dph","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron differentiation","termid":"GO:0030182"},{"relation_name":"part_of","term_name":"central nervous system development","termid":"GO:0007417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"central nervous system neuron differentiation","termid":"GO:0021953"}


id: FYPO:0000619
data:
  {"alleles_by_uniquename":{"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[119385],"is_not":false,"summary":null,"term":"FYPO:0000619"}],"single_locus_phenotype":[{"annotations":[119386],"is_not":false,"summary":null,"term":"FYPO:0000619"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested in anaphase under conditions where arrest does not normally occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle arrest in mitotic M phase","termid":"FYPO:0000608"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00871":null,"SJAG_04284":null,"SJAG_04464":null},"genotype_count":2,"genotypes_by_uniquename":{"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_00871","SJAG_04464"],"name":"abnormal cell cycle arrest in mitotic anaphase","references_by_uniquename":{"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_04284"],"single_locus_genotype_uniquenames":["nup61delta"],"synonyms":[{"name":"abnormal cell cycle arrest in anaphase during mitotic cell cycle","type":"exact"},{"name":"abnormal cell cycle arrest in mitotic anaphase during vegetative growth","type":"exact"},{"name":"abnormal cell cycle arrest in mitotic anaphase with condensed chromosomes","type":"exact"},{"name":"abnormal mitotic cell cycle arrest in anaphase","type":"exact"},{"name":"mitotic cell cycle progression in late anaphase: arrested","type":"narrow"}],"termid":"FYPO:0000619","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000619":null,"FYPO_EXT:0000001":null}}


id: PBO:0031525
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_DNA-1,N6-ethenoadenine_N-glycosylase_activity","termid":"PBO:0031525"}


id: PBO:0081509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 415 pseudogene 1","termid":"PBO:0081509"}


id: PBO:0070601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 69","termid":"PBO:0070601"}


id: GO:0019321
data:
  {"annotated_genes":["SJAG_02010","SJAG_00070","SJAG_03958","SJAG_04660","SJAG_04276","SJAG_03174"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100982,94811,95543],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019568"},{"annotations":[58540],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019303"},{"annotations":[74299],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006014"},{"annotations":[94813,95544,100983],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042843"},{"annotations":[65534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042732"},{"annotations":[118818],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005998"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide metabolic process","termid":"GO:0005996"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00070":null,"SJAG_02010":null,"SJAG_03174":null,"SJAG_03958":null,"SJAG_04276":null,"SJAG_04660":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"pentose metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"pentose metabolism","type":"exact"}],"termid":"GO:0019321","terms_by_termid":{"GO:0005998":null,"GO:0006014":null,"GO:0019303":null,"GO:0019568":null,"GO:0042732":null,"GO:0042843":null}}


id: GO:0043730
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-ureido-4-imidazole carboxylate + H2O = 5-amino-4-imidazole carboxylate + NH3 + CO2.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"5-ureido-4-imidazole carboxylate hydrolase activity","termid":"GO:0043730"}


id: PR:Q9HGP5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An F-actin-capping protein subunit beta that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00867","PRO:DNx","PANTHER:PTHR10619:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-actin-capping protein subunit beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC631.01c","secondary_identifiers":["UniProtKB:Q9HGP5"],"synonyms":[{"name":"Spom972h-CAPZB","type":"exact"}],"termid":"PR:Q9HGP5"}


id: PBO:0061093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NK6 homeobox 2","termid":"PBO:0061093"}


id: PBO:0063818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology like domain family A member 3","termid":"PBO:0063818"}


id: MONDO:0014835
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any striatal degeneration, autosomal dominant in which the cause of the disease is a mutation in the PDE10A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striatal degeneration, autosomal dominant","termid":"MONDO:0000211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0021179"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0021179","MONDO:0005559","MONDO:0005066"],"is_obsolete":false,"name":"striatal degeneration, autosomal dominant 2","secondary_identifiers":["UMLS:C4310791","MEDGEN:934758","OMIM:616922"],"synonyms":[{"name":"ADSD2","type":"exact"},{"name":"PDE10A striatal degeneration, autosomal dominant","type":"exact"},{"name":"striatal Degeneration, autosomal dominant 2","type":"exact"},{"name":"striatal Degeneration, autosomal dominant type 2","type":"exact"},{"name":"striatal degeneration, autosomal dominant","type":"broad"},{"name":"striatal degeneration, autosomal dominant 2; ADSD2","type":"exact"},{"name":"striatal degeneration, autosomal dominant caused by mutation in PDE10A","type":"exact"}],"termid":"MONDO:0014835","xrefs":{"Monarch":{"xref_id":"0014835"}}}


id: PBO:0053246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LHX1 divergent transcript","termid":"PBO:0053246"}


id: GO:1900703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of orcinol biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of orcinol biosynthetic process","termid":"GO:1900701"},{"relation_name":"positively_regulates","term_name":"orcinol biosynthetic process","termid":"GO:0046197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"positive regulation of orcinol biosynthetic process","synonyms":[{"name":"activation of orcinol anabolism","type":"exact"},{"name":"activation of orcinol biosynthesis","type":"exact"},{"name":"activation of orcinol biosynthetic process","type":"narrow"},{"name":"activation of orcinol formation","type":"exact"},{"name":"activation of orcinol synthesis","type":"exact"},{"name":"positive regulation of orcinol anabolism","type":"exact"},{"name":"positive regulation of orcinol biosynthesis","type":"exact"},{"name":"positive regulation of orcinol formation","type":"exact"},{"name":"positive regulation of orcinol synthesis","type":"exact"},{"name":"up regulation of orcinol anabolism","type":"exact"},{"name":"up regulation of orcinol biosynthesis","type":"exact"},{"name":"up regulation of orcinol biosynthetic process","type":"exact"},{"name":"up regulation of orcinol formation","type":"exact"},{"name":"up regulation of orcinol synthesis","type":"exact"},{"name":"up-regulation of orcinol anabolism","type":"exact"},{"name":"up-regulation of orcinol biosynthesis","type":"exact"},{"name":"up-regulation of orcinol biosynthetic process","type":"exact"},{"name":"up-regulation of orcinol formation","type":"exact"},{"name":"up-regulation of orcinol synthesis","type":"exact"},{"name":"upregulation of orcinol anabolism","type":"exact"},{"name":"upregulation of orcinol biosynthesis","type":"exact"},{"name":"upregulation of orcinol biosynthetic process","type":"exact"},{"name":"upregulation of orcinol formation","type":"exact"},{"name":"upregulation of orcinol synthesis","type":"exact"}],"termid":"GO:1900703"}


id: PBO:0000844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of condensation (RCC1) domains","termid":"PBO:0000844"}


id: FYPO:0006753
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 20 of histone H4 in heterochromatin at subtelomeric regions occurs to a lower extent than normal.","definition_xrefs":["PMID:29632066","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased H4-K20 dimethylation during vegetative growth","termid":"FYPO:0005028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0002494","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased histone H4-K20 dimethylation at subtelomeric heterochromatin during vegetative growth","synonyms":[{"name":"decreased histone H4 K20 dimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"decreased histone H4-K20 dimethylation at subtelomeres during vegetative growth","type":"exact"},{"name":"decreased histone H4-K20 dimethylation at subtelomeric heterochromatin during mitotic cell cycle","type":"related"},{"name":"decreased histone H4-K20 dimethylation at telomeric heterochromatin during vegetative growth","type":"related"},{"name":"decreased histone H4K20me2 at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"decreased histone lysine H4 K20 dimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"reduced histone H4-K20 dimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0006753"}


id: PBO:0015713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdc48p-Npl4p-Vms1p AAA ATPase complex subunit involved in ER associated ubiquitin-dependent protein catabolic process Vms1 (predicted)","termid":"PBO:0015713"}


id: PBO:0074950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 113-1","termid":"PBO:0074950"}


id: MONDO:0018043
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Thomas syndrome is characterized by renal anomalies, cardiac malformations and cleft lip or palate. It has been described in six patients. Transmission was suggested to be autosomal recessive.","definition_xrefs":["Orphanet:3316"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder","termid":"MONDO:0005267"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Thomas syndrome","secondary_identifiers":["UMLS:C2931225","GARD:5175","MEDGEN:419362","MESH:C536514","SCTID:716740009"],"synonyms":[{"name":"Potter sequence-cleft lip/palate-cardiopathy syndrome","type":"exact"}],"termid":"MONDO:0018043","xrefs":{"Monarch":{"xref_id":"0018043"}}}


id: GO:0020039
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The structure enclosing certain parasite cells such as certain apicomplexa and Euglenozoa; consists of the cell membrane with its associated infrastructure of microtubules, microfilaments and other organelles.","definition_xrefs":["GOC:mah","GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"pellicle","termid":"GO:0020039"}


id: PBO:0052832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 1-1","termid":"PBO:0052832"}


id: GO:0035432
data:
  {"annotated_genes":["SJAG_04920"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89716],"is_not":false,"summary":null,"term":"GO:0035432"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of gluconate across a membrane by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"regulation of gluconate transmembrane transport","termid":"GO:0035430"},{"relation_name":"positively_regulates","term_name":"gluconate transmembrane transport","termid":"GO:0035429"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of gluconate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0032895"],"synonyms":[{"name":"activation of gluconate transport","type":"narrow"},{"name":"induction of gluconate transport","type":"narrow"},{"name":"positive regulation of gluconate membrane transport","type":"exact"},{"name":"positive regulation of gluconate transport","type":"related"},{"name":"stimulation of gluconate transport","type":"narrow"},{"name":"up regulation of gluconate transport","type":"exact"},{"name":"up-regulation of gluconate transport","type":"exact"},{"name":"upregulation of gluconate transport","type":"exact"}],"termid":"GO:0035432","terms_by_termid":{"GO:0035432":null}}


id: PBO:0017090
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human COX18","termid":"PBO:0017090"}


id: PBO:0063727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatase and actin regulator 2","termid":"PBO:0063727"}


id: PR:O42895
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- afg1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42895"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C115.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC115.02c","synonyms":[{"name":"Spom972h-afg1","type":"exact"}],"termid":"PR:O42895"}


id: PBO:0048133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frataxin pseudogene 1","termid":"PBO:0048133"}


id: PBO:0028510
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_methylation_at_heterochromatin_domain","termid":"PBO:0028510"}


id: MOD:01552
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the O4'-hydrogen atom of a tyrosine residue with the Applied Biosystems iTRAQ8plex-116 reporter+balance group.","definition_xrefs":["Unimod:730#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"iTRAQ8plex-116 reporter+balance reagent acylated residue","termid":"MOD:01549"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-116 reporter+balance reagent O4'-acylated tyrosine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 113, 114, 116 & 117","type":"related"},{"name":"iTRAQ8plex","type":"related"},{"name":"iTRAQ8plex:13C(7)15N(1)","type":"related"}],"termid":"MOD:01552"}


id: FYPO:0006557
data:
  {"alleles_by_uniquename":{"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_03143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03143","name":"sep1delta","uniquename":"SJAG_03143:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[118992,118993],"is_not":false,"summary":null,"term":"FYPO:0006557"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cytokinesis does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell separation after cytokinesis","termid":"FYPO:0000164"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02252":null,"SJAG_03143":null},"genotype_count":2,"genotypes_by_uniquename":{"ace2delta":{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]},"sep1delta":{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abolished cell separation after cytokinesis","references_by_uniquename":{"PMID:22300943":null},"single_locus_annotated_genes":["SJAG_03143","SJAG_02252"],"single_locus_genotype_uniquenames":["ace2delta","sep1delta"],"synonyms":[{"name":"abolished cell separation after cytokinesis during mitotic cell cycle","type":"related"},{"name":"abolished cell separation after cytokinesis during vegetative growth","type":"exact"},{"name":"abolished mitotic cytokinetic cell separation","type":"exact"},{"name":"abolished septum digestion after cytokinesis","type":"exact"},{"name":"cell separation after cytokinesis abolished","type":"exact"}],"termid":"FYPO:0006557","terms_by_termid":{"FYECO:0000137":null,"FYPO:0006557":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PBO:0075910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST13, Hsp70 interacting protein pseudogene 2","termid":"PBO:0075910"}


id: MONDO:0008200
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"late-onset Parkinson disease","termid":"MONDO:0008199"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autosomal dominant Parkinson disease 1","secondary_identifiers":["DOID:0060367","MESH:C566823","OMIM:168601","GARD:18474","MEDGEN:357008","UMLS:C1868595"],"synonyms":[{"name":"PARK1","type":"related"},{"name":"Parkinson disease 1, autosomal dominant","type":"related"},{"name":"Parkinson disease 1, autosomal dominant Lewy body","type":"related"},{"name":"atypical Parkinson disease","type":"related"},{"name":"autosomal dominant Parkinson disease 1","type":"exact"},{"name":"autosomal dominant Parkinson disease type 1","type":"exact"},{"name":"autosomal dominant Parkinson's disease 1","type":"related"}],"termid":"MONDO:0008200","xrefs":{"Monarch":{"xref_id":"0008200"}}}


id: GO:0047664
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction:4-aminoimidazole + H20 = imidazol-4-one + NH3.","definition_xrefs":["RHEA:22348"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016810","GO:0016787"],"is_obsolete":false,"name":"aminoimidazolase activity","secondary_identifiers":["EC:3.5.4.8","MetaCyc:R13-RXN"],"synonyms":[{"name":"4-aminoimidazole aminohydrolase activity","type":"related"},{"name":"4-aminoimidazole hydrolase activity","type":"related"}],"termid":"GO:0047664"}


id: PBO:0045525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DTWD1 pseudogene 1","termid":"PBO:0045525"}


id: MONDO:0016408
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Permanent congenital hypothyroidism is a type of congenital hypothyroidism (CH), a thyroid hormone deficiency present from birth.","definition_xrefs":["Orphanet:226292"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary endocrine growth disease","termid":"MONDO:0015514"},{"relation_name":"is_a","term_name":"congenital hypothyroidism","termid":"MONDO:0018612"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"permanent congenital hypothyroidism","secondary_identifiers":["GARD:20560","MEDGEN:1843186","UMLS:C5680893","icd11.foundation:801729371"],"termid":"MONDO:0016408","xrefs":{"Monarch":{"xref_id":"0016408"}}}


id: MONDO:0031055
data:
  {"annotated_genes":["SJAG_04909"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85536],"is_not":false,"summary":null,"term":"MONDO:0031055"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04909":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0005027"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy 107","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5774215","OMIM:620033","MEDGEN:1823988","DOID:0070393"],"synonyms":[{"name":"DEE107","type":"exact"},{"name":"developmental and epileptic encephalopathy 107","type":"exact"}],"termid":"MONDO:0031055","terms_by_termid":{"MONDO:0031055":null},"xrefs":{"Monarch":{"xref_id":"0031055"}}}


id: MONDO:0003983
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Carcinoma that is detected in one breast within two months from the diagnosis of carcinoma in the other breast.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bilateral breast carcinoma","termid":"MONDO:0003982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"synchronous bilateral breast carcinoma","secondary_identifiers":["NCIT:C40370","MEDGEN:271163","DOID:6742","UMLS:C1515107"],"termid":"MONDO:0003983","xrefs":{"Monarch":{"xref_id":"0003983"}}}


id: PBO:0058325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4698","termid":"PBO:0058325"}


id: GO:1901880
data:
  {"annotated_genes":["SJAG_02700","SJAG_01993","SJAG_01894","SJAG_00279"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78956,75456,79854,92121],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051016"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein depolymerization.","definition_xrefs":["GOC:rl","GOC:BHF","GOC:TermGenie","PMID:12032137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex disassembly","termid":"GO:0043242"},{"relation_name":"is_a","term_name":"regulation of protein depolymerization","termid":"GO:1901879"},{"relation_name":"negatively_regulates","term_name":"protein depolymerization","termid":"GO:0051261"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_01894":null,"SJAG_01993":null,"SJAG_02700":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein depolymerization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of protein depolymerization","type":"exact"},{"name":"down regulation of protein polymer breakdown","type":"exact"},{"name":"down regulation of protein polymer catabolic process","type":"exact"},{"name":"down regulation of protein polymer catabolism","type":"exact"},{"name":"down regulation of protein polymer degradation","type":"exact"},{"name":"down-regulation of protein depolymerization","type":"exact"},{"name":"down-regulation of protein polymer breakdown","type":"exact"},{"name":"down-regulation of protein polymer catabolic process","type":"exact"},{"name":"down-regulation of protein polymer catabolism","type":"exact"},{"name":"down-regulation of protein polymer degradation","type":"exact"},{"name":"downregulation of protein depolymerization","type":"exact"},{"name":"downregulation of protein polymer breakdown","type":"exact"},{"name":"downregulation of protein polymer catabolic process","type":"exact"},{"name":"downregulation of protein polymer catabolism","type":"exact"},{"name":"downregulation of protein polymer degradation","type":"exact"},{"name":"inhibition of protein depolymerization","type":"narrow"},{"name":"inhibition of protein polymer breakdown","type":"exact"},{"name":"inhibition of protein polymer catabolic process","type":"exact"},{"name":"inhibition of protein polymer catabolism","type":"exact"},{"name":"inhibition of protein polymer degradation","type":"exact"},{"name":"negative regulation of protein polymer breakdown","type":"exact"},{"name":"negative regulation of protein polymer catabolic process","type":"exact"},{"name":"negative regulation of protein polymer catabolism","type":"exact"},{"name":"negative regulation of protein polymer degradation","type":"exact"}],"termid":"GO:1901880","terms_by_termid":{"GO:0051016":null}}


id: PBO:0072782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAE1 pseudogene 1","termid":"PBO:0072782"}


id: GO:0140659
data:
  {"annotated_genes":["SJAG_01665","SJAG_04781"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71511,79657],"is_not":false,"summary":null,"term":"GO:0140659"}]},"cv_name":"molecular_function","definition":"Binds to and modulates the activity of a motor protein.","definition_xrefs":["PMID:23142046","PMID:33221250"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular function regulator activity","termid":"GO:0098772"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01665":null,"SJAG_04781":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0098772"],"is_obsolete":false,"name":"cytoskeletal motor regulator activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"motor activity regulator activity","type":"broad"}],"termid":"GO:0140659","terms_by_termid":{"GO:0140659":null}}


id: PBO:0110509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 66 member 1 like, pseudogene","termid":"PBO:0110509"}


id: PBO:0109457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-amino acid N-acetyltransferase","termid":"PBO:0109457"}


id: PBO:0053411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 348","termid":"PBO:0053411"}


id: GO:0016199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The recognition of molecules at the central nervous system midline choice point by an axon growth cone; this choice point determines whether the growth cone will cross the midline.","definition_xrefs":["PMID:11376484"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axon choice point recognition","termid":"GO:0016198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axon midline choice point recognition","termid":"GO:0016199"}


id: MONDO:0030866
data:
  {"annotated_genes":["SJAG_03914","SJAG_01766"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85501,85502],"is_not":false,"summary":null,"term":"MONDO:0030866"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01766":null,"SJAG_03914":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1750805","OMIM:619121","DOID:0070543","UMLS:C5436848"],"synonyms":[{"name":"NEDCASB","type":"exact"}],"termid":"MONDO:0030866","terms_by_termid":{"MONDO:0030866":null},"xrefs":{"Monarch":{"xref_id":"0030866"}}}


id: GO:1990049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of neuronal dense core vesicles along axonal microtubules towards the cell body.","definition_xrefs":["PMID:23358451","GOC:kmv","PMID:24762653"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retrograde axonal transport","termid":"GO:0008090"},{"relation_name":"is_a","term_name":"vesicle transport along microtubule","termid":"GO:0047496"},{"relation_name":"is_a","term_name":"dense core granule cytoskeletal transport","termid":"GO:0099519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"retrograde neuronal dense core vesicle transport","synonyms":[{"name":"retrograde dense core granule trafficking","type":"exact"},{"name":"retrograde dense core granule transport","type":"exact"}],"termid":"GO:1990049"}


id: MONDO:0008684
data:
  {"annotated_genes":["SJAG_01806"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85405],"is_not":false,"summary":null,"term":"MONDO:0008684"}]},"cv_name":"mondo","definition":"Wolf-Hirschhorn syndrome (WHS) is a developmental disorder characterized by typical craniofacial features, prenatal and postnatal growth impairment, intellectual disability, severe delayed psychomotor development, seizures, and hypotonia.","definition_xrefs":["Orphanet:280"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"epilepsy","termid":"MONDO:0005027"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndromic genetic hearing loss (obsolete MONDO:0019589)","termid":"MONDO:0019589"},{"relation_name":"excluded_subClassOf","term_name":"obsolete chromosomal anomaly with cataract (obsolete MONDO:0020226)","termid":"MONDO:0020226"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"chromosome 4 short arm deletion","termid":"MONDO:0022762"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01806":null},"genotype_count":0,"is_obsolete":false,"name":"Wolf-Hirschhorn syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:7896","NANDO:1200683","NCIT:C35528","NANDO:2200962","OMIM:194190","icd11.foundation:1337401724","SCTID:718226002","MedDRA:10050361","DECIPHER:1","MEDGEN:408255","DOID:0050460","ICD10CM:Q93.3","UMLS:C1956097","MESH:D054877","NORD:1859"],"synonyms":[{"name":"4p deletion syndrome","type":"exact"},{"name":"4p syndrome","type":"related"},{"name":"4p- syndrome","type":"exact"},{"name":"Pitt syndrome","type":"exact"},{"name":"Pitt-Rogers-Danks syndrome","type":"exact"},{"name":"WHS","type":"related"},{"name":"Wittwer syndrome","type":"exact"},{"name":"Wolf syndrome","type":"related"},{"name":"Wolf-Hirschhorn syndrome","type":"exact"},{"name":"Wolf-Hirschhorn syndrome, Isolated cases","type":"exact"},{"name":"chromosome 4P16.3 deletion syndrome","type":"related"},{"name":"chromosome 4p syndrome","type":"related"},{"name":"chromosome 4p16.3 deletion syndrome","type":"exact"},{"name":"distal deletion 4p","type":"exact"},{"name":"distal monosomy 4p","type":"exact"},{"name":"microcephaly, IUGR, hypertelorism, ptosis, iris coloboma, hooked nose, external ear dysplasia, psychomotor retardation","type":"related"},{"name":"telomeric deletion 4p","type":"exact"}],"termid":"MONDO:0008684","terms_by_termid":{"MONDO:0008684":null},"xrefs":{"Monarch":{"xref_id":"0008684"}}}


id: GO:0000417
data:
  {"annotated_genes":["SJAG_00914","SJAG_00925","SJAG_00913","SJAG_04561"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[73505,78448,79430,112596],"is_not":false,"summary":null,"term":"GO:0000417"}]},"cv_name":"cellular_component","definition":"A protein complex proposed to be involved in replication-independent nucleosome assembly, by promoting histone deposition onto DNA. For example, in Saccharomyces, the complex contains Hir1p, Hir2p, Hir3p, and Hpc2p.","definition_xrefs":["PMID:17180700","GOC:mah","PMID:16303565","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00913":null,"SJAG_00914":null,"SJAG_00925":null,"SJAG_04561":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"HIR complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"HIRA complex","type":"exact"}],"termid":"GO:0000417","terms_by_termid":{"GO:0000417":null}}


id: FYECO:0000041
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which a sugar alcohol was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE FYECO:0000041 sugar alcohol added (obsolete FYECO:0000041)","termid":"FYECO:0000041"}


id: PBO:0026868
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_methylation_at_mating_type_locus","termid":"PBO:0026868"}


id: GO:0051050
data:
  {"annotated_genes":["SJAG_04464","SJAG_01245","SJAG_03453","SJAG_03591","SJAG_04551","SJAG_04312","SJAG_05346","SJAG_00845","SJAG_01805","SJAG_02605","SJAG_02592","SJAG_04597","SJAG_00661","SJAG_03048","SJAG_04920","SJAG_00991"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101942],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905665"},{"annotations":[103491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045807"},{"annotations":[99979],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045921"},{"annotations":[89716],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035432"},{"annotations":[91537,110333,98679,93131],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905589"},{"annotations":[91538,98680,93132],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905534"},{"annotations":[93133],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905626"},{"annotations":[94208],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902854"},{"annotations":[93603,101649,110804,100241],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046827"},{"annotations":[90643,94166,102180],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042307"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"positively_regulates","term_name":"transport","termid":"GO:0006810"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00661":null,"SJAG_00845":null,"SJAG_00991":null,"SJAG_01245":null,"SJAG_01805":null,"SJAG_02592":null,"SJAG_02605":null,"SJAG_03048":null,"SJAG_03453":null,"SJAG_03591":null,"SJAG_04312":null,"SJAG_04464":null,"SJAG_04551":null,"SJAG_04597":null,"SJAG_04920":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of transport","type":"narrow"},{"name":"stimulation of transport","type":"narrow"},{"name":"up regulation of transport","type":"exact"},{"name":"up-regulation of transport","type":"exact"},{"name":"upregulation of transport","type":"exact"}],"termid":"GO:0051050","terms_by_termid":{"GO:0035432":null,"GO:0042307":null,"GO:0045807":null,"GO:0045921":null,"GO:0046827":null,"GO:1902854":null,"GO:1905534":null,"GO:1905589":null,"GO:1905626":null,"GO:1905665":null}}


id: PBO:0083387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps essential, verified gene PLP2/YOR281C","termid":"PBO:0083387"}


id: PBO:0039139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apical junction component 1 homolog","termid":"PBO:0039139"}


id: PBO:0077969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (AGC) 21-1","termid":"PBO:0077969"}


id: FYPO:0006202
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to hydroxyurea is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal RNA level during cellular response to hydroxyurea","synonyms":[{"name":"normal RNA accumulation during cellular response to hydroxyurea","type":"related"},{"name":"normal RNA level during cellular response to HU","type":"exact"},{"name":"normal RNA level during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"normal RNA level during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"normal mRNA level during cellular response to hydroxyurea","type":"narrow"},{"name":"normal transcript level during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0006202"}


id: GO:0008907
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the integration of one DNA segment into another.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0140097"],"is_obsolete":false,"name":"integrase activity","secondary_identifiers":["Reactome:R-HSA-164523"],"termid":"GO:0008907"}


id: PBO:0064718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 54","termid":"PBO:0064718"}


id: PBO:0069449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 714, pseudogene","termid":"PBO:0069449"}


id: MONDO:0004040
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm of the bladder in which the epithelial cells grow downward into the underlying supportive tissue, which often causes hematuria.","definition_xrefs":["NCIT:C39859"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inverted urothelial papilloma","termid":"MONDO:0021109"},{"relation_name":"is_a","term_name":"bladder urothelial papilloma","termid":"MONDO:0044906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urinary bladder inverted papilloma","secondary_identifiers":["MEDGEN:267740","UMLS:C1511190","SCTID:447765004","DOID:6932"],"synonyms":[{"name":"bladder inverted papilloma","type":"exact"},{"name":"urinary bladder inverted papilloma","type":"exact"}],"termid":"MONDO:0004040","xrefs":{"Monarch":{"xref_id":"0004040"}}}


id: GO:0006762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete dihydrofolate reduction (obsolete GO:0006762)","synonyms":[{"name":"dihydrofolate reduction","type":"exact"}],"termid":"GO:0006762"}


id: GO:1901520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of aspyridone B.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide catabolic process","termid":"GO:0030640"},{"relation_name":"is_a","term_name":"pyridine-containing compound catabolic process","termid":"GO:0072526"},{"relation_name":"is_a","term_name":"aspyridone B metabolic process","termid":"GO:1901519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"aspyridone B catabolic process","synonyms":[{"name":"aspyridone B breakdown","type":"exact"},{"name":"aspyridone B catabolism","type":"exact"},{"name":"aspyridone B degradation","type":"exact"}],"termid":"GO:1901520"}


id: FYPO:0003303
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the post-anaphase array of microtubules is present in an abnormal location.","definition_xrefs":["PMID:9348288","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal post-anaphase array","termid":"FYPO:0004316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0002399","FYPO:0001320"],"is_obsolete":false,"name":"mislocalized post-anaphase array","synonyms":[{"name":"mislocalised post-anaphase array","type":"exact"},{"name":"mislocalized PAA","type":"exact"},{"name":"mislocalized post-anaphase array during mitotic cell cycle","type":"related"},{"name":"mislocalized post-anaphase array during vegetative growth","type":"exact"},{"name":"mislocalized post-anaphase microtubule array","type":"exact"}],"termid":"FYPO:0003303"}


id: PBO:0060176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaxin 1","termid":"PBO:0060176"}


id: PBO:0059709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 17","termid":"PBO:0059709"}


id: GO:0043524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons.","definition_xrefs":["GOC:go_curators","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"is_a","term_name":"regulation of neuron apoptotic process","termid":"GO:0043523"},{"relation_name":"negatively_regulates","term_name":"neuron apoptotic process","termid":"GO:0051402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neuron apoptotic process","synonyms":[{"name":"down regulation of neuron apoptosis","type":"exact"},{"name":"down-regulation of neuron apoptosis","type":"exact"},{"name":"downregulation of neuron apoptosis","type":"exact"},{"name":"inhibition of neuron apoptosis","type":"narrow"},{"name":"negative regulation of neuron apoptosis","type":"narrow"},{"name":"negative regulation of programmed cell death, neurons","type":"exact"},{"name":"neuron survival","type":"narrow"}],"termid":"GO:0043524"}


id: PBO:0060458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAIP pseudogene 1","termid":"PBO:0060458"}


id: MOD:01950
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamine residue to L-isoglutamyl histamine.","definition_xrefs":["RESID:AA0596","PubMed:23022564"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamine residue","termid":"MOD:00907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-isoglutamyl histamine","synonyms":[{"name":"(2S)-2-amino-5-([2-(1H-imidazol-5-yl)ethyl]amino)-5-oxopentanoic acid","type":"exact"},{"name":"(gamma-glutamyl)histamine","type":"exact"},{"name":"L-isoglutamyl histamine","type":"exact"}],"termid":"MOD:01950"}


id: MONDO:0012292
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"excluded_subClassOf","term_name":"T-B+ severe combined immunodeficiency","termid":"MONDO:0044200"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatitis C virus, susceptibility to","secondary_identifiers":["MEDGEN:322657","UMLS:C1835407","OMIM:609532"],"synonyms":[{"name":"HCV, resistance to","type":"related"},{"name":"HCV, susceptibility to","type":"related"},{"name":"Hepatitis C Virus infection, response to therapy of","type":"related"},{"name":"Hepatitis C Virus, resistance to","type":"related"},{"name":"hepatitis C virus, response to therapy of","type":"exact"},{"name":"hepatitis C virus, susceptibility to","type":"exact"}],"termid":"MONDO:0012292","xrefs":{"Monarch":{"xref_id":"0012292"}}}


id: GO:0048084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of establishment of the adult pattern of pigmentation in the cuticle of an organism.","definition_xrefs":["GOC:jid","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of chitin-based cuticle tanning","termid":"GO:0045801"},{"relation_name":"is_a","term_name":"positive regulation of cuticle pigmentation","termid":"GO:0048081"},{"relation_name":"is_a","term_name":"regulation of adult chitin-containing cuticle pigmentation","termid":"GO:0048082"},{"relation_name":"positively_regulates","term_name":"adult chitin-containing cuticle pigmentation","termid":"GO:0048085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of adult chitin-containing cuticle pigmentation","synonyms":[{"name":"activation of adult chitin-containing cuticle pigmentation","type":"narrow"},{"name":"stimulation of adult chitin-containing cuticle pigmentation","type":"narrow"},{"name":"up regulation of adult chitin-containing cuticle pigmentation","type":"exact"},{"name":"up-regulation of adult chitin-containing cuticle pigmentation","type":"exact"},{"name":"upregulation of adult chitin-containing cuticle pigmentation","type":"exact"}],"termid":"GO:0048084"}


id: PBO:0070415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II associated protein 1","termid":"PBO:0070415"}


id: PBO:0040376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk subunit d pseudogene 4","termid":"PBO:0040376"}


id: GO:0035417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the rate or extent of mitotic prometaphase, the stage following prophase in mitosis (in higher eukaryotes) during which the nuclear envelope is disrupted and breaks into membrane vesicles, and the spindle microtubules enter the nuclear region.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of mitotic prometaphase (obsolete GO:0035417)","synonyms":[{"name":"negative regulation of mitotic prometaphase","type":"exact"}],"termid":"GO:0035417"}


id: PBO:0074553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 6","termid":"PBO:0074553"}


id: PBO:0067641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 814, pseudogene","termid":"PBO:0067641"}


id: PBO:0088206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zn(II)2Cys6 family transcription factor; positively regulates sterol uptake genes under anaerobic conditions; involved in hypoxic gene expression; represses filamentation-inducing genes during vegetative growth; positively regulates mating with SUT2 by repressing expression of genes that act as mating inhibitors; repressed by STE12; relocalizes from the nucleus to the cytoplasm upon DNA replication stress; SUT1 has a paralog, SUT2, that arose from the whole genome duplication","termid":"PBO:0088206"}


id: PBO:0058422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4791","termid":"PBO:0058422"}


id: PBO:0077396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 132D","termid":"PBO:0077396"}


id: PBO:0080187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitamin D receptor","termid":"PBO:0080187"}


id: PBO:0113427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine kinase that controls cell cycle progression; represses rDNA transcription and promotes 20S pre-rRNA maturation; catalytic activity regulates its association with pre-40S particles where it prevents premature entry into translation; downregulates centromeric RNA levels, limits RNAPII accessibility, stimulates cenRNA degradation and promotes timely kinetochore assembly; autophosphorylates and phosphorylates Rpa43p in anaphase to remove Pol I from rDNA","termid":"PBO:0113427"}


id: PR:P41892
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cdc7 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P41892"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division control protein 7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21.06c","synonyms":[{"name":"Spom972h-cdc7","type":"exact"}],"termid":"PR:P41892"}


id: PBO:0086408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative glycoside hydrolase of the mitochondrial intermembrane space","termid":"PBO:0086408"}


id: PBO:0038789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase domain containing 1","termid":"PBO:0038789"}


id: PBO:0035849
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_serine_phosphorylation_during_mitosis","termid":"PBO:0035849"}


id: FYPO:0000228
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which sister chromatids do not move towards the spindle poles at the same time during mitosis, but instead one or more chromosomes remain distant from the spindle pole after the bulk of the DNA has separated. Mitotic sister chromatid segregation may stop before completing separation of chromosomes, or may eventually be completed.","definition_xrefs":["PomBase:mah","PMID:20211136","PMID:11809834"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic sister chromatid segregation","termid":"FYPO:0000141"},{"relation_name":"is_a","term_name":"lagging chromosomes","termid":"FYPO:0002090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000337","FYPO:0001985","FYPO:0000641","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"lagging mitotic chromosomes","synonyms":[{"name":"chromosome segregation defects, lagging mitotic chromosomes","type":"exact"},{"name":"lagging chromosomes during mitotic cell cycle","type":"related"},{"name":"lagging chromosomes during vegetative growth","type":"exact"},{"name":"lagging mitotic sister chromatids","type":"exact"}],"termid":"FYPO:0000228"}


id: MONDO:0036491
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. An infrequent malignant neoplasm that occurs during childhood.","definition_xrefs":["NCIT:C114451"],"gene_count":0,"genotype_count":0,"name":"obsolete rare childhood malignant neoplasm (obsolete MONDO:0036491)","synonyms":[{"name":"Rare malignant neoplasm","type":"exact"},{"name":"rare childhood cancer","type":"exact"},{"name":"rare childhood malignant neoplasm","type":"exact"},{"name":"rare malignant childhood neoplasm","type":"exact"}],"termid":"MONDO:0036491","xrefs":{"Monarch":{"xref_id":"0036491"}}}


id: FYPO:0002479
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetative cell is viable and has a larger volume, and is longer, than normal. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"swollen vegetative cell","termid":"FYPO:0000646"},{"relation_name":"is_a","term_name":"elongated vegetative cell","termid":"FYPO:0001122"},{"relation_name":"is_a","term_name":"swollen elongated cell","termid":"FYPO:0001429"},{"relation_name":"is_a","term_name":"viable vegetative cell","termid":"FYPO:0001491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000005","FYPO:0000002","FYPO:0000004","FYPO:0001985"],"is_obsolete":false,"name":"viable swollen elongated vegetative cell","synonyms":[{"name":"viable elongated cell with increased cell volume","type":"exact"},{"name":"viable enlarged elongated cell","type":"related"},{"name":"viable large elongated cell","type":"related"},{"name":"viable swollen elongated cell during vegetative growth","type":"exact"},{"name":"viable swollen elongated vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002479"}


id: GO:1905593
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of optical nerve axon regeneration.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:16699509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of axon regeneration","termid":"GO:0048680"},{"relation_name":"is_a","term_name":"regulation of optical nerve axon regeneration","termid":"GO:1905591"},{"relation_name":"positively_regulates","term_name":"optical nerve axon regeneration","termid":"GO:0101027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of optical nerve axon regeneration","synonyms":[{"name":"activation of optical nerve axon regeneration","type":"narrow"},{"name":"up regulation of optical nerve axon regeneration","type":"exact"},{"name":"up-regulation of optical nerve axon regeneration","type":"exact"},{"name":"upregulation of optical nerve axon regeneration","type":"exact"}],"termid":"GO:1905593"}


id: MOD:01595
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Applied Biosystems iTRAQ8plex-114 reagent derivatized residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"iTRAQ8plex-114 reporter+balance reagent acylated residue","termid":"MOD:01535"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter fragment","termid":"MOD:01593"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-114 reporter fragment","synonyms":[{"name":"4-methyl-1-methylidenepiperazin-1-ium","type":"exact"}],"termid":"MOD:01595"}


id: MONDO:0012328
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichilemmal cyst","secondary_identifiers":["MEDGEN:389216","icd11.foundation:150930710","OMIM:609649","SCTID:254677004","UMLS:C2266788"],"synonyms":[{"name":"Pilar cyst","type":"related"},{"name":"TRICY1","type":"related"},{"name":"Tricholemmal cyst","type":"related"},{"name":"trichilemmal cyst 1","type":"related"}],"termid":"MONDO:0012328","xrefs":{"Monarch":{"xref_id":"0012328"}}}


id: FYPO:0006220
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell septum does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to cell division site","termid":"FYPO:0001880"},{"relation_name":"is_a","term_name":"abnormal protein localization to septum","termid":"FYPO:0002718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to septum","synonyms":[{"name":"abolished protein localisation to septum","type":"exact"},{"name":"abolished protein localization to septum during mitotic cell cycle","type":"related"},{"name":"protein absent from septum","type":"related"},{"name":"protein localization to septum abolished","type":"exact"},{"name":"protein localization to septum abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0006220"}


id: GO:0071922
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of a process in which a cohesin complex is transported to, or maintained at, a part of a chromosome that is organized into chromatin.","definition_xrefs":["GOC:lb","GOC:mah","PMID:17113138"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cohesin loading (obsolete GO:0071922)","synonyms":[{"name":"regulation of cohesin association with chromatin","type":"exact"},{"name":"regulation of cohesin localisation to chromatin","type":"exact"},{"name":"regulation of cohesin localization to chromatin","type":"exact"}],"termid":"GO:0071922"}


id: PBO:0058937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle positioning","termid":"PBO:0058937"}


id: PBO:0085903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; may be involved in responding to conditions of stress; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress","termid":"PBO:0085903"}


id: GO:0055127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transmission of vibrations via ossicles to the inner ear.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"sensory perception of sound","termid":"GO:0007605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vibrational conductance of sound to the inner ear","termid":"GO:0055127"}


id: GO:0002350
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process leading to positive selection of B cells in the periphery. Positive selection is the process in which B or T cells are selected to survive based on signaling through their antigen receptors.","definition_xrefs":["GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral B cell selection","termid":"GO:0002343"},{"relation_name":"is_a","term_name":"B cell positive selection","termid":"GO:0002346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral B cell positive selection","synonyms":[{"name":"peripheral B lymphocyte positive selection","type":"exact"},{"name":"peripheral B-cell positive selection","type":"exact"},{"name":"peripheral B-lymphocyte positive selection","type":"exact"}],"termid":"GO:0002350"}


id: PBO:0047900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(7)(q31.2)","termid":"PBO:0047900"}


id: GO:1902751
data:
  {"annotated_genes":["SJAG_03592","SJAG_04140","SJAG_02342","SJAG_01805","SJAG_01837","SJAG_00117","SJAG_03602","SJAG_01456","SJAG_04332","SJAG_00256","SJAG_03309","SJAG_00214","SJAG_03486","SJAG_01000","SJAG_01901","SJAG_04486","SJAG_03067","SJAG_04597","SJAG_00883","SJAG_02592","SJAG_00216"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94165,110138,116277,70683,87846,73344,98230,110995,116465,103285,91933,107032,93598,108371,87837,101555,91529,94204,98801],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010971"},{"annotations":[101186,87639],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905287"},{"annotations":[73349],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110032"}]},"cv_name":"biological_process","definition":"Any signaling pathway that activates or increases the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the cell cycle.","definition_xrefs":["GO_REF:0000058","GOC:jl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell cycle phase transition","termid":"GO:1901989"},{"relation_name":"is_a","term_name":"regulation of cell cycle G2/M phase transition","termid":"GO:1902749"},{"relation_name":"positively_regulates","term_name":"cell cycle G2/M phase transition","termid":"GO:0044839"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00117":null,"SJAG_00214":null,"SJAG_00216":null,"SJAG_00256":null,"SJAG_00883":null,"SJAG_01000":null,"SJAG_01456":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_01901":null,"SJAG_02342":null,"SJAG_02592":null,"SJAG_03067":null,"SJAG_03309":null,"SJAG_03486":null,"SJAG_03592":null,"SJAG_03602":null,"SJAG_04140":null,"SJAG_04332":null,"SJAG_04486":null,"SJAG_04597":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of cell cycle G2/M phase transition","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"activation of cell cycle G2/M phase transition","type":"narrow"},{"name":"up regulation of cell cycle G2/M phase transition","type":"exact"},{"name":"up-regulation of cell cycle G2/M phase transition","type":"exact"},{"name":"upregulation of cell cycle G2/M phase transition","type":"exact"}],"termid":"GO:1902751","terms_by_termid":{"GO:0010971":null,"GO:0110032":null,"GO:1905287":null}}


id: FYPO:0005622
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the cell contains a normal (i.e. indistinguishable from wild type) amount of adducts formed between a topoisomerase and DNA.","definition_xrefs":["PomBase:mah","PMID:22730331"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative phenotype","termid":"FYPO:0001312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal topoisomerase-DNA adduct level","synonyms":[{"name":"normal Top1-DNA adduct level","type":"narrow"},{"name":"normal Top1cc level","type":"narrow"},{"name":"normal topoisomerase I-DNA adduct level","type":"narrow"},{"name":"normal topoisomerase-DNA adduct level during mitotic cell cycle","type":"related"},{"name":"normal topoisomerase-DNA adduct level during vegetative growth","type":"exact"}],"termid":"FYPO:0005622"}


id: PBO:0081029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 11A","termid":"PBO:0081029"}


id: GO:0042064
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cell adhesion receptor regulator activity (obsolete GO:0042064)","synonyms":[{"name":"cell adhesion receptor regulator activity","type":"exact"}],"termid":"GO:0042064"}


id: PR:Q10487
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mfs1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10487"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transporter mfs1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.16c","synonyms":[{"name":"Spom972h-mfs1","type":"exact"}],"termid":"PR:Q10487"}


id: GO:1904048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of spontaneous neurotransmitter secretion.","definition_xrefs":["PMID:22314364","GOC:pad","GO_REF:0000058","GOC:PARL","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotransmitter secretion","termid":"GO:0046928"},{"relation_name":"is_a","term_name":"regulation of spontaneous synaptic transmission","termid":"GO:0150003"},{"relation_name":"regulates","term_name":"spontaneous neurotransmitter secretion","termid":"GO:0061669"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0006810"],"is_obsolete":false,"name":"regulation of spontaneous neurotransmitter secretion","synonyms":[{"name":"regulation of stimulus-independent neurotransmitter secretion","type":"exact"}],"termid":"GO:1904048"}


id: GO:0043626
data:
  {"annotated_genes":["SJAG_04190"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70963],"is_not":false,"summary":null,"term":"GO:0043626"}]},"cv_name":"cellular_component","definition":"A protein complex composed of three identical PCNA monomers, each comprising two similar domains, which are joined in a head-to-tail arrangement to form a homotrimer. Forms a ring-like structure in solution, with a central hole sufficiently large to accommodate the double helix of DNA. Originally characterized as a DNA sliding clamp for replicative DNA polymerases and as an essential component of the replisome, and has also been shown to be involved in other processes including Okazaki fragment processing, DNA repair, translesion DNA synthesis, DNA methylation, chromatin remodeling and cell cycle regulation.","definition_xrefs":["PMID:12829735","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA polymerase processivity factor complex","termid":"GO:0044796"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04190":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"PCNA complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"PCNA homotrimer","type":"exact"},{"name":"proliferating cell nuclear antigen complex","type":"exact"},{"name":"sliding clamp","type":"broad"}],"termid":"GO:0043626","terms_by_termid":{"GO:0043626":null}}


id: MONDO:0017821
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete functioning pituitary adenoma (obsolete MONDO:0017821)","termid":"MONDO:0017821","xrefs":{"Monarch":{"xref_id":"0017821"}}}


id: GO:0032792
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the transcription factor CREB.","definition_xrefs":["GOC:tb","GOC:ecd","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of DNA-binding transcription factor activity","termid":"GO:0043433"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0010467","GO:0006355"],"is_obsolete":false,"name":"negative regulation of CREB transcription factor activity","synonyms":[{"name":"CREB inhibitor","type":"related"},{"name":"inhibition of CREB transcription factor","type":"exact"}],"termid":"GO:0032792"}


id: PBO:0061717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUT family member 2B","termid":"PBO:0061717"}


id: GO:0047312
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyruvate + L-phenylalanine = phenylpyruvate + L-alanine.","definition_xrefs":["RHEA:13053"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromatic-amino-acid transaminase activity","termid":"GO:0008793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016769"],"is_obsolete":false,"name":"L-phenylalanine-pyruvate transaminase activity","secondary_identifiers":["KEGG_REACTION:R00692","MetaCyc:2.6.1.58-RXN","Reactome:R-HSA-893593"],"synonyms":[{"name":"L-histidine:pyruvate aminotransferase activity","type":"related"},{"name":"L-phenylalanine(L-histidine):pyruvate aminotransferase activity","type":"broad"},{"name":"L-phenylalanine:pyruvate aminotransferase activity","type":"exact"},{"name":"L-phenylalanine:pyruvate transaminase activity","type":"exact"},{"name":"histidine aminotransferase activity","type":"related"},{"name":"histidine:pyruvate aminotransferase activity","type":"related"},{"name":"phenylalanine (histidine) aminotransferase activity","type":"broad"},{"name":"phenylalanine(histidine) aminotransferase activity","type":"broad"},{"name":"phenylalanine(histidine) transaminase activity","type":"broad"},{"name":"phenylalanine(histidine):pyruvate aminotransferase activity","type":"broad"}],"termid":"GO:0047312"}


id: PBO:0058038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4259","termid":"PBO:0058038"}


id: GO:0005161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a platelet-derived growth factor receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth factor receptor binding","termid":"GO:0070851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"platelet-derived growth factor receptor binding","synonyms":[{"name":"PDGF","type":"narrow"},{"name":"PDGF receptor binding","type":"exact"},{"name":"PDGFR binding","type":"exact"},{"name":"platelet-derived growth factor","type":"narrow"},{"name":"platelet-derived growth factor receptor ligand","type":"narrow"}],"termid":"GO:0005161"}


id: PBO:0003603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translational activator of cytochrome C oxidase I (predicted)","termid":"PBO:0003603"}


id: MONDO:0004418
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"infiltrating bladder urothelial carcinoma","termid":"MONDO:0003890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"microcystic variant infiltrating bladder urothelial carcinoma","secondary_identifiers":["DOID:7971","NCIT:C39820","MEDGEN:268574","UMLS:C1512740"],"synonyms":[{"name":"infiltrating bladder urothelial carcinoma, microcystic variant","type":"exact"}],"termid":"MONDO:0004418","xrefs":{"Monarch":{"xref_id":"0004418"}}}


id: PBO:0056803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 1 pseudogene 1","termid":"PBO:0056803"}


id: SO:0001972
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A histone 4 modification where the modification is the acetylation of the residue.","definition_xrefs":["SO:ke","EBI:nj","ISBN:0815341059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_acetylation_site","termid":"SO:0001702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"histone_4_acetylation_site","synonyms":[{"name":"H4ac","type":"exact"},{"name":"histone 4 acetylation site","type":"exact"}],"termid":"SO:0001972"}


id: PBO:0064912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP4R2 pseudogene 1","termid":"PBO:0064912"}


id: MONDO:0001877
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"male infertility","termid":"MONDO:0005372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"infertility due to extratesticular cause","secondary_identifiers":["UMLS:C0021360","DOID:14096","MEDGEN:507846","ICD9:606.8","SCTID:84245004"],"synonyms":[{"name":"infertility due to extratesticular causes","type":"exact"}],"termid":"MONDO:0001877","xrefs":{"Monarch":{"xref_id":"0001877"}}}


id: MONDO:0018783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"rheumatic disorder","termid":"MONDO:0005554"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblastic rheumatism","secondary_identifiers":["icd11.foundation:112300601","GARD:21958","SCTID:399964004","UMLS:C1302753","MEDGEN:724307","ICD9:729.0","Orphanet:477650"],"termid":"MONDO:0018783","xrefs":{"Monarch":{"xref_id":"0018783"}}}


id: PBO:0090380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial [2Fe-2S] cluster assembly frataxin Fxn1","termid":"PBO:0090380"}


id: PBO:0003940
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.1.1.6","termid":"PBO:0003940"}


id: PBO:0066011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RALY RNA binding protein like","termid":"PBO:0066011"}


id: PR:O14011
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pre-mRNA-processing factor 19 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02137","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-processing factor 19 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29A4.08c","secondary_identifiers":["UniProtKB:O14011"],"synonyms":[{"name":"Spom972h-PRPF19","type":"exact"},{"name":"complexed with cdc5 protein 8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14011"}


id: PBO:0004856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Rpn13a","termid":"PBO:0004856"}


id: GO:1900586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of arugosin.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"arugosin metabolic process","termid":"GO:1900585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"arugosin catabolic process","synonyms":[{"name":"arugosin breakdown","type":"exact"},{"name":"arugosin catabolism","type":"exact"},{"name":"arugosin degradation","type":"exact"}],"termid":"GO:1900586"}


id: PBO:0032701
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_nucleus_during_cellular_response_to_hydroxyurea","termid":"PBO:0032701"}


id: GO:0017180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of peptidyl-diphthine from other compounds, including peptidyl-histidine.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete protein histidyl modification to diphthine (obsolete GO:0017180)","synonyms":[{"name":"peptidyl-diphthine anabolism from peptidyl-histidine","type":"exact"},{"name":"peptidyl-diphthine biosynthetic process from peptidyl-histidine","type":"exact"},{"name":"peptidyl-diphthine formation from peptidyl-histidine","type":"exact"},{"name":"peptidyl-diphthine synthesis from peptidyl-histidine","type":"exact"}],"termid":"GO:0017180"}


id: GO:2000973
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of pro-B cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lymphoid progenitor cell differentiation","termid":"GO:1905456"},{"relation_name":"regulates","term_name":"pro-B cell differentiation","termid":"GO:0002328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of pro-B cell differentiation","synonyms":[{"name":"regulation of pro-B cell development","type":"related"},{"name":"regulation of pro-B lymphocyte differentiation","type":"exact"}],"termid":"GO:2000973"}


id: PR:O74448
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04403","PANTHER:PTHR10657:SF4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-prolyl cis-trans isomerase pin1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.03","secondary_identifiers":["UniProtKB:O74448"],"synonyms":[{"name":"PPIase pin1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PIN1","type":"exact"}],"termid":"PR:O74448"}


id: GO:0098512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a humidity stimulus is received and converted into a molecular signal as part of the sensory perception of humidity.","definition_xrefs":["GOC:dos","PMID:8650222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of stimulus involved in sensory perception","termid":"GO:0050906"},{"relation_name":"is_a","term_name":"detection of humidity","termid":"GO:0098513"},{"relation_name":"part_of","term_name":"sensory perception of humidity","termid":"GO:0098509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of humidity stimulus involved in sensory perception","termid":"GO:0098512"}


id: FYPO:0004162
data:
  {"alleles_by_uniquename":{"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119414],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0005231"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in the population remains viable when cells the population are subject to glucose starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"loss of viability upon nutrient depletion","termid":"FYPO:0000244"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02527":null},"genotype_count":1,"genotypes_by_uniquename":{"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown":{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0002057"],"is_obsolete":false,"name":"loss of viability upon glucose starvation","references_by_uniquename":{"PMID:37233261":null},"single_locus_annotated_genes":["SJAG_02527"],"single_locus_genotype_uniquenames":["lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown"],"synonyms":[{"name":"decreased viability upon glucose starvation","type":"exact"},{"name":"loss of cell population viability upon glucose starvation","type":"exact"},{"name":"loss of viability upon glucose depletion","type":"exact"},{"name":"loss of viability upon glucose deprivation","type":"exact"},{"name":"loss of viability upon glucose limitation","type":"related"},{"name":"reduced viability upon glucose starvation","type":"exact"}],"termid":"FYPO:0004162","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0005231":null}}


id: GO:0010962
data:
  {"annotated_genes":["SJAG_01376","SJAG_01787","SJAG_04771","SJAG_04509","SJAG_04659","SJAG_04462","SJAG_00610","SJAG_00424","SJAG_03705","SJAG_02278","SJAG_04668","SJAG_00963","SJAG_04666","SJAG_01255"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78687,76983],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045719"},{"annotations":[87308,92216],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"},{"annotations":[87686],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032951"},{"annotations":[105717,117705,90563,117830,92200,105146,102639],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090334"},{"annotations":[92222,102641,89227,94732],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of glucan biosynthesis. Glucan biosynthetic processes are the chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polysaccharide biosynthetic process","termid":"GO:0032885"},{"relation_name":"regulates","term_name":"glucan biosynthetic process","termid":"GO:0009250"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_00963":null,"SJAG_01255":null,"SJAG_01376":null,"SJAG_01787":null,"SJAG_02278":null,"SJAG_03705":null,"SJAG_04462":null,"SJAG_04509":null,"SJAG_04659":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0010962","terms_by_termid":{"GO:0032951":null,"GO:0045719":null,"GO:0070610":null,"GO:0090334":null,"GO:0140748":null}}


id: MONDO:0006036
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A slow-growing, malignant tumor, characterize by the presence of granulosa-like cells and Call-Exner bodies, that is almost always found in the ovary. In rare cases, it has also been found in the testicle. There are two types of granulosa cell tumor that can be distinguished under the microscope: the adult and the juvenile. The testicular juvenile granulosa cell tumors are perhaps the most common congenital testicular neoplasms.","definition_xrefs":["NCIT:C3070"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocrine gland neoplasm","termid":"MONDO:0002082"},{"relation_name":"is_a","term_name":"sex cord-stromal tumor","termid":"MONDO:0006055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"granulosa cell tumor","secondary_identifiers":["EFO:1000032","MESH:D006106","DOID:2999","MEDGEN:6676","UMLS:C0018206","ONCOTREE:GRCT"],"synonyms":[{"name":"GRCT","type":"related"},{"name":"granulosa cell neoplasm","type":"exact"},{"name":"granulosa cell neoplasm (disease)","type":"exact"},{"name":"granulosa cell tumor","type":"exact"},{"name":"granulosa cell tumor, adult type","type":"exact"},{"name":"granulosa cell tumor, adult type (morphologic abnormality)","type":"exact"},{"name":"granulosa cell tumor, sarcomatoid","type":"exact"},{"name":"granulosa cell tumor, undetermined","type":"related"},{"name":"neoplasm of granulosa cell","type":"exact"},{"name":"tumor of granulosa cell","type":"exact"},{"name":"tumour of granulosa cell","type":"exact"}],"termid":"MONDO:0006036","xrefs":{"Monarch":{"xref_id":"0006036"}}}


id: GO:0042796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis of small nuclear RNA (snRNA) from a DNA template by RNA Polymerase III (Pol III), originating at a Pol III promoter.","definition_xrefs":["GOC:jl","ISBN:0321000382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription by RNA polymerase III","termid":"GO:0006383"},{"relation_name":"is_a","term_name":"snRNA transcription","termid":"GO:0009301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016073"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0016073","GO:0008150","GO:0006351"],"is_obsolete":false,"name":"snRNA transcription by RNA polymerase III","synonyms":[{"name":"snRNA transcription from Pol III promoter","type":"exact"},{"name":"snRNA transcription from RNA polymerase III promoter","type":"exact"}],"termid":"GO:0042796"}


id: PR:Q09761
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sld3 gene.","definition_xrefs":["UniProtKB:Q09761","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication regulator sld3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24H6.06","synonyms":[{"name":"Spom972h-sld3","type":"exact"},{"name":"meiotically up-regulated gene 175 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09761"}


id: PBO:0066769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 67","termid":"PBO:0066769"}


id: PBO:0018055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione-specific gamma-glutamylcyclotransferase Ggg1 (predicted)","termid":"PBO:0018055"}


id: GO:0043406
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of MAP kinase activity.","definition_xrefs":["GOC:dph","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of MAP kinase activity","termid":"GO:0043405"},{"relation_name":"is_a","term_name":"positive regulation of MAPK cascade","termid":"GO:0043410"},{"relation_name":"is_a","term_name":"positive regulation of protein serine/threonine kinase activity","termid":"GO:0071902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of MAP kinase activity","synonyms":[{"name":"positive regulation of mitogen activated protein kinase activity","type":"exact"},{"name":"positive regulation of mitogen-activated protein kinase activity","type":"exact"},{"name":"stimulation of MAPK activity","type":"narrow"},{"name":"up regulation of MAPK activity","type":"exact"},{"name":"up-regulation of MAPK activity","type":"exact"},{"name":"upregulation of MAPK activity","type":"exact"}],"termid":"GO:0043406"}


id: PBO:0077254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane p24 trafficking protein 5","termid":"PBO:0077254"}


id: PBO:0090932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi 4,6-pyruvylated galactose (PvGal) residue biosynthesis protein Pvg2","termid":"PBO:0090932"}


id: GO:0006293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The stabilization of the multiprotein complex involved in damage recognition, DNA helix unwinding, and endonucleolytic cleavage at the site of DNA damage as well as the unwound DNA. The stabilization of the protein-DNA complex ensures proper positioning of the preincision complex before the phosphodiester backbone of the damaged strand is cleaved 3' and 5' of the site of DNA damage.","definition_xrefs":["PMID:10197977","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"part_of","term_name":"nucleotide-excision repair","termid":"GO:0006289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0006259","GO:0006281","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"nucleotide-excision repair, preincision complex stabilization","termid":"GO:0006293"}


id: FYPO:0004465
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type) during a cellular response to camptothecin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal protein phosphorylation during cellular response to camptothecin","synonyms":[{"name":"normal protein phosphorylation during cellular response to CPT","type":"exact"},{"name":"normal protein phosphorylation during cellular response to camptothecin during mitotic cell cycle","type":"related"},{"name":"normal protein phosphorylation during cellular response to camptothecin during vegetative growth","type":"exact"}],"termid":"FYPO:0004465"}


id: PBO:0072083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 13","termid":"PBO:0072083"}


id: GO:0003882
data:
  {"annotated_genes":["SJAG_01233"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66900],"is_not":false,"summary":null,"term":"GO:0003882"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: CDP-diacylglycerol + L-serine = CMP + O-sn-phosphatidyl-L-serine.","definition_xrefs":["EC:2.7.8.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CDP-alcohol phosphatidyltransferase activity","termid":"GO:0017169"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01233":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016780","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"CDP-diacylglycerol-serine O-phosphatidyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["MetaCyc:PHOSPHASERSYN-RXN","RHEA:16913"],"synonyms":[{"name":"CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity","type":"related"},{"name":"CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity","type":"related"},{"name":"CDP-diglyceride-L-serine phosphatidyltransferase activity","type":"related"},{"name":"CDP-diglyceride:serine phosphatidyltransferase activity","type":"related"},{"name":"CDP-diglycerine-serine O-phosphatidyltransferase activity","type":"related"},{"name":"CDPdiacylglycerol-serine O-phosphatidyltransferase activity","type":"related"},{"name":"CDPdiglyceride-serine O-phosphatidyltransferase activity","type":"related"},{"name":"PS synthase activity","type":"related"},{"name":"cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity","type":"related"},{"name":"cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity","type":"related"},{"name":"cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity","type":"related"},{"name":"phosphatidylserine synthase activity","type":"related"},{"name":"phosphatidylserine synthetase activity","type":"related"},{"name":"serine exchange enzyme","type":"broad"}],"termid":"GO:0003882","terms_by_termid":{"GO:0003882":null}}


id: PBO:0075253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 18 pseudogene 5","termid":"PBO:0075253"}


id: GO:0052020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in the structure or function of the host cell wall. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete modification by symbiont of host cell wall (obsolete GO:0052020)","synonyms":[{"name":"metabolism of host cell wall by organism","type":"exact"}],"termid":"GO:0052020"}


id: GO:0060064
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id: PBO:0040482
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id: GO:0010488
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id: PBO:0077228
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id: PBO:0085784
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id: GO:0032952
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id: MONDO:0010054
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id: PBO:0062869
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id: MONDO:0037871
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id: PR:Q10367
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id: GO:0033168
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id: MONDO:0005977
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id: GO:0003957
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADPH + NAD+ = NADP+ + NADH.","definition_xrefs":["RHEA:11692"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H as acceptor","termid":"GO:0016652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"NAD(P)+ transhydrogenase (Si-specific) activity","secondary_identifiers":["Reactome:R-HSA-450971","EC:1.6.1.1"],"synonyms":[{"name":"H+-thase","type":"broad"},{"name":"NAD transhydrogenase","type":"broad"},{"name":"NAD(P) transhydrogenase (B-specific) activity","type":"exact"},{"name":"NAD(P)+ transhydrogenase (B-specific) activity","type":"exact"},{"name":"NADH transhydrogenase","type":"broad"},{"name":"NADH-NADP-transhydrogenase","type":"broad"},{"name":"NADPH-NAD oxidoreductase","type":"broad"},{"name":"NADPH-NAD transhydrogenase","type":"broad"},{"name":"NADPH:NAD+ oxidoreductase (B-specific)","type":"related"},{"name":"NADPH:NAD+ transhydrogenase","type":"broad"},{"name":"nicotinamide adenine dinucleotide (phosphate) transhydrogenase","type":"broad"},{"name":"nicotinamide nucleotide transhydrogenase activity","type":"broad"},{"name":"non-energy-linked transhydrogenase activity","type":"related"},{"name":"pyridine nucleotide transferase","type":"broad"},{"name":"pyridine nucleotide transhydrogenase activity","type":"broad"}],"termid":"GO:0003957"}


id: GO:1905305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cardiac myofibril assembly.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:16151019","GOC:rl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytoskeleton organization","termid":"GO:0051494"},{"relation_name":"is_a","term_name":"negative regulation of organelle assembly","termid":"GO:1902116"},{"relation_name":"is_a","term_name":"negative regulation of supramolecular fiber organization","termid":"GO:1902904"},{"relation_name":"is_a","term_name":"regulation of cardiac myofibril assembly","termid":"GO:1905304"},{"relation_name":"is_a","term_name":"negative regulation of cardiac muscle cell differentiation","termid":"GO:2000726"},{"relation_name":"negatively_regulates","term_name":"cardiac myofibril assembly","termid":"GO:0055003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007010"},{"rel_name":"negatively_regulates","termid":"GO:0030036"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0044085","GO:0008150","GO:0030036"],"is_obsolete":false,"name":"negative regulation of cardiac myofibril assembly","synonyms":[{"name":"down regulation of cardiac myofibril assembly","type":"exact"},{"name":"down regulation of cardiac myofibril development","type":"exact"},{"name":"down regulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"down regulation of heart myofibril assembly","type":"related"},{"name":"down-regulation of cardiac myofibril assembly","type":"exact"},{"name":"down-regulation of cardiac myofibril development","type":"exact"},{"name":"down-regulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"down-regulation of heart myofibril assembly","type":"related"},{"name":"downregulation of cardiac myofibril assembly","type":"exact"},{"name":"downregulation of cardiac myofibril development","type":"exact"},{"name":"downregulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"downregulation of heart myofibril assembly","type":"related"},{"name":"inhibition of cardiac myofibril assembly","type":"narrow"},{"name":"inhibition of cardiac myofibril development","type":"narrow"},{"name":"inhibition of cardiac myofibril morphogenesis","type":"narrow"},{"name":"inhibition of heart myofibril assembly","type":"related"},{"name":"negative regulation of cardiac myofibril development","type":"exact"},{"name":"negative regulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"negative regulation of heart myofibril assembly","type":"related"}],"termid":"GO:1905305"}


id: PBO:0082687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; potentially phosphorylated by Cdc28p; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p","termid":"PBO:0082687"}


id: PBO:0028143
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_5-demethoxyubiquinone-10_level","termid":"PBO:0028143"}


id: PBO:0053084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late cornified envelope 1B","termid":"PBO:0053084"}


id: PBO:0055565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3001","termid":"PBO:0055565"}


id: PBO:0059662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 28","termid":"PBO:0059662"}


id: PBO:0036236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tuberin, GTPase activator Tsc2","termid":"PBO:0036236"}


id: GO:0102878
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2E,6E)-farnesyl diphosphate = (+)-alpha-barbatene + diphosphate.","definition_xrefs":["RHEA:29499"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(+)-alpha-barbatene synthase activity","secondary_identifiers":["MetaCyc:RXN-8417","EC:4.2.3.69"],"termid":"GO:0102878"}


id: PBO:0085627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in export of proteins from the endoplasmic reticulum; ERV15 has a paralog, ERV14, that arose from the whole genome duplication","termid":"PBO:0085627"}


id: MONDO:0024263
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Aspiration of meconium, blood, amniotic fluid or gastric contents around the time of delivery resulting in clinical symptoms from airway obstruction, parenchymal injury, and ventilation-perfusion mismatch. This may lead to persistent pulmonary hypertension in the newborn.","definition_xrefs":["NCIT:C118312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"lung disorder","termid":"MONDO:0005275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neonatal aspiration syndrome","secondary_identifiers":["MEDGEN:578767","UMLS:C0349468","SCTID:276533002"],"termid":"MONDO:0024263","xrefs":{"Monarch":{"xref_id":"0024263"}}}


id: PBO:0076713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor 19","termid":"PBO:0076713"}


id: GO:0045838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of membrane potential","synonyms":[{"name":"activation of membrane potential","type":"narrow"},{"name":"elevation of membrane potential","type":"exact"},{"name":"stimulation of membrane potential","type":"narrow"},{"name":"up regulation of membrane potential","type":"exact"},{"name":"up-regulation of membrane potential","type":"exact"},{"name":"upregulation of membrane potential","type":"exact"}],"termid":"GO:0045838"}


id: GO:0070218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of sulfide ions within an organism or cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete sulfide ion homeostasis (obsolete GO:0070218)","synonyms":[{"name":"sulfide generation","type":"related"},{"name":"sulfide homeostasis","type":"exact"},{"name":"sulfide production","type":"related"},{"name":"sulphide generation","type":"related"},{"name":"sulphide homeostasis","type":"exact"},{"name":"sulphide ion homeostasis","type":"exact"},{"name":"sulphide production","type":"related"}],"termid":"GO:0070218"}


id: PBO:0057776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 2355","termid":"PBO:0057776"}


id: GO:0035857
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process involved in the specification of identity of an eosinophil cell. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.","definition_xrefs":["GOC:vk","GOC:BHF","CL:0000771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"eosinophil fate commitment","termid":"GO:0035854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"eosinophil fate specification","synonyms":[{"name":"eosinophil cell fate specification","type":"exact"}],"termid":"GO:0035857"}


id: PBO:0028569
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_nucleotide-excision_repair_during_cellular_response_to_UV","termid":"PBO:0028569"}


id: PBO:0016550
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cereviaiae YKR002W","termid":"PBO:0016550"}


id: PBO:0071404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 10","termid":"PBO:0071404"}


id: PBO:0038538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 13","termid":"PBO:0038538"}


id: GO:0006786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of heme c, a derivative of heme found in cytochromes c, b4, and f.","definition_xrefs":["PubChem_Compound:122208","GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme biosynthetic process","termid":"GO:0006783"},{"relation_name":"is_a","term_name":"heme C metabolic process","termid":"GO:0046162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"heme C biosynthetic process","synonyms":[{"name":"haem C biosynthesis","type":"exact"},{"name":"haem C biosynthetic process","type":"exact"},{"name":"heme C anabolism","type":"exact"},{"name":"heme C biosynthesis","type":"exact"},{"name":"heme C formation","type":"exact"},{"name":"heme C synthesis","type":"exact"}],"termid":"GO:0006786"}


id: PBO:0028269
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_nitric_oxide_level_during_cellular_response_to_cadmium_ion","termid":"PBO:0028269"}


id: PBO:0030501
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_cell_cycle_checkpoint","termid":"PBO:0030501"}


id: PBO:0071665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37a pseudogene 6","termid":"PBO:0071665"}


id: MONDO:0012248
data:
  {"annotated_genes":["SJAG_01491"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84997],"is_not":false,"summary":null,"term":"MONDO:0012248"}]},"cv_name":"mondo","definition":"Autosomal recessive limb-girdle muscular dystrophy type 2K (LGMD2K) is a form of limb-girdle muscular dystrophy characterized by the onset of slowly progressive proximal muscle weakness during childhood (with fatigue and difficulty running and climbing stairs) and developmental delay. Mild intellectual deficit and microcephaly, without any obvious structural brain abnormality, are found in all patients. Mild pseudohypertrophy and joint contractures of the ankles have also been reported.","definition_xrefs":["Orphanet:86812"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type C","termid":"MONDO:0000173"},{"relation_name":"is_a","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"},{"relation_name":"is_a","term_name":"qualitative or quantitative defects of protein O-mannosyltransferase 1","termid":"MONDO:0016184"},{"relation_name":"is_a","term_name":"myopathy caused by variation in POMT1","termid":"MONDO:0700070"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01491":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005066","MONDO:0005336","MONDO:0024322","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive limb-girdle muscular dystrophy type 2K","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:12535","MEDGEN:332193","SCTID:720523006","NCIT:C133730","DOID:0110297","OMIM:609308","UMLS:C1836373"],"synonyms":[{"name":"LGMD-POMT1 related","type":"exact"},{"name":"LGMD2K","type":"exact"},{"name":"MDDGC1","type":"exact"},{"name":"POMT1 autosomal recessive limb-girdle muscular dystrophy","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy caused by mutation in POMT1","type":"exact"},{"name":"limb-girdle muscular dystrophy - intellectual disability","type":"related"},{"name":"limb-girdle muscular dystrophy type 2K","type":"related"},{"name":"limb-girdle muscular dystrophy-intellectual disability syndrome","type":"exact"},{"name":"muscular dystrophy limb-girdle type 2K","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 2K","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (Limb-girdle) type C, 1","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (limb-girdle) type C 1","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 1","type":"related"}],"termid":"MONDO:0012248","terms_by_termid":{"MONDO:0012248":null},"xrefs":{"Monarch":{"xref_id":"0012248"}}}


id: FYPO:0007297
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a promoter that contains one or more SRE elements occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah","PMID:32053662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000294","FYPO:0000002","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased transcription from SRE promoter","synonyms":[{"name":"expression of SRE target genes increased","type":"related"},{"name":"increased transcription from SRE promoter during mitotic cell cycle","type":"related"},{"name":"increased transcription from SRE promoter during vegetative growth","type":"exact"}],"termid":"FYPO:0007297"}


id: PBO:0049454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucoside xylosyltransferase 2","termid":"PBO:0049454"}


id: PBO:0079735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBX domain protein 1","termid":"PBO:0079735"}


id: R0:0009004
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"'has consumer' is a relation between a material entity and an organism in which the former can normally be digested or otherwise absorbed by the latter without immediate or persistent ill effect.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_consumer","termid":"R0:0009004"}


