# terms

id: PATO:0000055
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000055 relative number (obsolete PATO:0000055)","termid":"PATO:0000055"}


id: MONDO:0017446
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"apodia","secondary_identifiers":["Orphanet:294986","MEDGEN:488816","SCTID:371197005","GARD:21197","UMLS:C0265624","icd11.foundation:1419324219"],"synonyms":[{"name":"congenital absence of foot","type":"exact"}],"termid":"MONDO:0017446","xrefs":{"Monarch":{"xref_id":"0017446"}}}


id: FYECO:0000170
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which hydroxyurea was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ HU","synonyms":[{"name":"hydroxyurea added","type":"exact"}],"termid":"FYECO:0000170"}


id: GO:0031346
data:
  {"annotated_genes":["SJAG_01794","SJAG_04509","SJAG_02379","SJAG_03453","SJAG_00514"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111113,87657,93246,89628,90611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902917"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the process involved in the formation, arrangement of constituent parts, or disassembly of cell projections.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell projection organization","termid":"GO:0031344"},{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"positively_regulates","term_name":"cell projection organization","termid":"GO:0030030"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_01794":null,"SJAG_02379":null,"SJAG_03453":null,"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell projection organization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of cell projection organization","type":"narrow"},{"name":"positive regulation of cell projection organisation","type":"exact"},{"name":"positive regulation of cell projection organization and biogenesis","type":"related"},{"name":"stimulation of cell projection organization","type":"narrow"},{"name":"up regulation of cell projection organization","type":"exact"},{"name":"up-regulation of cell projection organization","type":"exact"},{"name":"upregulation of cell projection organization","type":"exact"}],"termid":"GO:0031346","terms_by_termid":{"GO:1902917":null}}


id: PBO:0089270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane i-AAA protease complex subunit Yme1","termid":"PBO:0089270"}


id: GO:0071784
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the endoplasmic reticulum (ER) cisternal network. The ER cisternal network is the ER part that comprises the membranes with low curvature in cross-section.","definition_xrefs":["PMID:16469703","PMID:20434336","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"endoplasmic reticulum cisternal network organization","termid":"GO:0071783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"endoplasmic reticulum cisternal network assembly","synonyms":[{"name":"ER cisternal network assembly","type":"exact"},{"name":"ER cisternal network formation","type":"exact"},{"name":"endoplasmic reticulum cisternal network formation","type":"exact"}],"termid":"GO:0071784"}


id: FYPO:0000310
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a normal germ tube, but does not go on to form a viable dividing cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division","termid":"FYPO:0001991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, with normal germ tube morphology","synonyms":[{"name":"inviable after spore germination, undivided cell with normal germ tube morphology","type":"exact"},{"name":"inviable following spore germination, without cell division, with normal germ tube morphology","type":"exact"},{"name":"inviable germinated spore, without cell division, with normal germ tube morphology","type":"exact"},{"name":"lethal after spore germination, without cell division, with normal germ tube morphology","type":"exact"}],"termid":"FYPO:0000310"}


id: PR:Q09818
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mot2 gene.","definition_xrefs":["UniProtKB:Q09818","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general negative regulator of transcription C16C9.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16C9.04c","synonyms":[{"name":"Spom972h-mot2","type":"exact"}],"termid":"PR:Q09818"}


id: PBO:0062949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasomal ATPase associated factor 1","termid":"PBO:0062949"}


id: GO:0099629
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A network of proteins within and adjacent to the postsynaptic membrane of a symmetric synapse, consisting of anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components that spatially and functionally organize the neurotransmitter receptors at the synapse. This structure is not as thick or electron dense as the postsynaptic densities found in asymmetric synapses.","definition_xrefs":["PMID:18832033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"postsynaptic specialization","termid":"GO:0099572"},{"relation_name":"part_of","term_name":"symmetric synapse","termid":"GO:0032280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"postsynaptic specialization of symmetric synapse","synonyms":[{"name":"postsynaptic density of inhibitory synapse","type":"exact"}],"termid":"GO:0099629"}


id: FYPO:0004109
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which the activation of monopolar cell growth, i.e. the initiation of growth at the old end of a cell following cell division, begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal activation of monopolar cell growth","termid":"FYPO:0001393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"delayed activation of monopolar cell growth","synonyms":[{"name":"delayed activation of monopolar vegetative cell growth","type":"exact"},{"name":"delayed onset of activation of monopolar vegetative cell growth","type":"exact"}],"termid":"FYPO:0004109"}


id: PBO:0074776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 3I","termid":"PBO:0074776"}


id: PBO:0063111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PARM1 antisense RNA 1","termid":"PBO:0063111"}


id: MONDO:0018630
data:
  {"annotated_genes":["SJAG_02748","SJAG_02226","SJAG_01620","SJAG_02187"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86142],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007356"},{"annotations":[84964],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012249"},{"annotations":[85413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013699"},{"annotations":[85415],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013710"},{"annotations":[85425,85426],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008018"}]},"cv_name":"mondo","definition":"Hereditary nonpolyposis colon cancer (HNPCC) is a cancer-predisposing condition characterized by the development of colorectal cancer not associated with colorectal polyposis, endometrial cancer, and various other cancers (such as malignant epithelial tumor of ovary, gastric, biliary tract, small bowel, and urinary tract cancer) that are frequently diagnosed at an early age.","definition_xrefs":["Orphanet:443909"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"},{"relation_name":"is_a","term_name":"familial colorectal cancer","termid":"MONDO:0023113"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01620":null,"SJAG_02187":null,"SJAG_02226":null,"SJAG_02748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"hereditary nonpolyposis colon cancer","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:315058005","NCIT:C120083","MEDGEN:232602","OMIMPS:120435","UMLS:C1333990"],"synonyms":[{"name":"HNPCC","type":"exact"},{"name":"Hereditary nonpolyposis colorectal cancer (HNPCC)","type":"exact"},{"name":"colorectal cancer, hereditary nonpolyposis","type":"exact"},{"name":"familial nonpolyposis colon cancer","type":"exact"},{"name":"familial nonpolyposis colorectal cancer","type":"exact"},{"name":"hereditary nonpolyposis colon cancer","type":"exact"},{"name":"hereditary nonpolyposis colorectal cancer","type":"exact"}],"termid":"MONDO:0018630","terms_by_termid":{"MONDO:0007356":null,"MONDO:0008018":null,"MONDO:0012249":null,"MONDO:0013699":null,"MONDO:0013710":null},"xrefs":{"Monarch":{"xref_id":"0018630"}}}


id: GO:0016969
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. An oxygen carrier found in a few groups of invertebrates, e.g. sipunculid worms, certain molluscs, and crustaceans.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete hemerythrin (obsolete GO:0016969)","synonyms":[{"name":"hemerythrin","type":"exact"}],"termid":"GO:0016969"}


id: PBO:0065109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase C delta","termid":"PBO:0065109"}


id: MONDO:0021465
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that involves the vermiform appendix.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"appendiceal neoplasm","termid":"MONDO:0001236"},{"relation_name":"is_a","term_name":"benign neoplasm of cecum","termid":"MONDO:0021464"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"benign neoplasm of appendix","secondary_identifiers":["ICD10CM:D12.1","NCIT:C4773","UMLS:C0496860","MEDGEN:99221","SCTID:91981009","icd11.foundation:7146014"],"synonyms":[{"name":"benign appendix neoplasm","type":"exact"},{"name":"benign appendix tumor","type":"exact"},{"name":"benign appendix tumour","type":"exact"},{"name":"benign neoplasm of the appendix","type":"exact"},{"name":"benign tumor of appendix","type":"exact"},{"name":"benign tumor of the appendix","type":"exact"},{"name":"benign tumour of appendix","type":"exact"},{"name":"benign tumour of the appendix","type":"exact"},{"name":"vermiform appendix benign neoplasm","type":"exact"}],"termid":"MONDO:0021465","xrefs":{"Monarch":{"xref_id":"0021465"}}}


id: MONDO:0009080
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Split hand - split foot - deafness is an extremely rare genetic syndrome reported in a few families to date and characterized clinically by split hand/split foot malformation (SHFM) and mild to moderate sensorineural hearing loss, sometimes associated with cleft palate and intellectual deficit.","definition_xrefs":["Orphanet:71271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"split hand-foot malformation 1 with sensorineural hearing loss","secondary_identifiers":["DOID:0090024","MEDGEN:347431","OMIM:220600","SCTID:723611008","GARD:16686","MESH:C565647","UMLS:C1857344"],"synonyms":[{"name":"SHFM1D","type":"exact"},{"name":"congenital deafness with split hands and feet","type":"exact"},{"name":"deafness, congenital, with split hands and feet","type":"related"},{"name":"split hand-foot malformation 1 with sensorineural hearing loss","type":"exact"},{"name":"split hand-split foot-deafness syndrome","type":"related"},{"name":"split-hand/foot malformation 1 with sensorineural hearing loss","type":"exact"},{"name":"split-hand/foot malformation 1 with sensorineural hearing loss, autosomal recessive","type":"related"}],"termid":"MONDO:0009080","xrefs":{"Monarch":{"xref_id":"0009080"}}}


id: PBO:0012064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptide transmembrane transporter Dal5h1 (predicted)","termid":"PBO:0012064"}


id: PBO:0044439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily F member 8","termid":"PBO:0044439"}


id: MOD:01438
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-[2-(pyridin-2-yl)ethyl]-L-cysteine.","definition_xrefs":["PubMed:18688235","PubMed:18369855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-pyridylethyl-L-cysteine","termid":"MOD:00424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-[2-(pyridin-2-yl)ethyl]-L-cysteine","synonyms":[{"name":"2-PEC","type":"exact"},{"name":"2-vinylpyridine derivatized cysteine residue","type":"exact"},{"name":"Pyridylethyl","type":"related"},{"name":"Pyridylethyl Cystenyl","type":"exact"},{"name":"S-(pyridin-2-ylethyl)-L-cysteine","type":"exact"},{"name":"S-pyridylethylation","type":"related"}],"termid":"MOD:01438"}


id: GO:0000486
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Endonucleolytic cleavage between the 5.8S rRNA and the 2S rRNA of an rRNA molecule originally produced as a tetracistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, 2S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript.","definition_xrefs":["GOC:curators","PMID:768488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA)","termid":"GO:0000483"},{"relation_name":"part_of","term_name":"maturation of 2S rRNA","termid":"GO:0000475"},{"relation_name":"part_of","term_name":"maturation of 5.8S rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA)","termid":"GO:0000487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0042254","GO:0044085"],"is_obsolete":false,"name":"cleavage between 5.8S rRNA and 2S rRNA of tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA)","termid":"GO:0000486"}


id: PBO:0028957
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony,_swollen_elongated_septated_cells_(obsolete_FYPO:0002844)","termid":"PBO:0028957"}


id: MOD:00493
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with a formyl group.","definition_xrefs":["PubMed:15799070","DeltaMass:0","Unimod:122"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylated residue","termid":"MOD:00649"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formylated residue","synonyms":[{"name":"FoRes","type":"exact"},{"name":"Formyl","type":"related"},{"name":"Formylation","type":"related"},{"name":"Formylation (CHO)","type":"exact"}],"termid":"MOD:00493"}


id: GO:0021918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of spinal cord motor neurons to specific motor neuron types along the anterior-posterior axis.","definition_xrefs":["GOC:jid","GOC:dgh","GOC:dph","PMID:11262869","GO_REF:0000021","GOC:cls"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment (obsolete GO:0021918)","termid":"GO:0021918"}


id: PBO:0059041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"matrix metallopeptidase 28","termid":"PBO:0059041"}


id: PBO:0002354
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.12","termid":"PBO:0002354"}


id: PR:Q10192
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 60S ribosomal protein L18 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03674"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L18-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11C11.07","secondary_identifiers":["UniProtKB:Q10192"],"synonyms":[{"name":"Spom972h-RPL18","type":"exact"}],"termid":"PR:Q10192"}


id: GO:0042996
data:
  {"annotated_genes":["SJAG_03970"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87850],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042997"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the transport of proteins from the Golgi to the plasma membrane.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein transport","termid":"GO:0051223"},{"relation_name":"is_a","term_name":"regulation of vesicle-mediated transport","termid":"GO:0060627"},{"relation_name":"is_a","term_name":"regulation of protein localization to plasma membrane","termid":"GO:1903076"},{"relation_name":"regulates","term_name":"Golgi to plasma membrane protein transport","termid":"GO:0043001"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03970":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"regulation of Golgi to plasma membrane protein transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0042996","terms_by_termid":{"GO:0042997":null}}


id: GO:0102910
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 H+ + 2 coniferol + O2 = (+)-pinoresinol + 2 H2O. The The protein encoding this activity has been termed 'dirigent protein' because it does not express any catalytic activity and serves only to bind and orientate the coniferyl alcohol-derived free radicals.","definition_xrefs":["GOC:pz","MetaCyc:RXN-8677","PMID:37202648"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular_function","termid":"GO:0003674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"dirigent protein activity","termid":"GO:0102910"}


id: PBO:0035986
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K14_acetylation_during_vegetative_growth","termid":"PBO:0035986"}


id: PBO:0043854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capping protein inhibiting regulator of actin dynamics","termid":"PBO:0043854"}


id: PBO:0072256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S20 pseudogene 31","termid":"PBO:0072256"}


id: GO:0002149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of hypochlorous acid.","definition_xrefs":["PMID:176150","GOC:add","PMID:10085024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypochlorous acid metabolic process","termid":"GO:0002148"},{"relation_name":"is_a","term_name":"small molecule biosynthetic process","termid":"GO:0044283"},{"relation_name":"is_a","term_name":"reactive oxygen species biosynthetic process","termid":"GO:1903409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"hypochlorous acid biosynthetic process","synonyms":[{"name":"HClO biosynthetic process","type":"exact"},{"name":"HOCl biosynthetic process","type":"exact"},{"name":"hypochlorite biosynthetic process","type":"related"},{"name":"hypochlorous acid biosynthesis","type":"exact"}],"termid":"GO:0002149"}


id: GO:1905306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cardiac myofibril assembly.","definition_xrefs":["GOC:TermGenie","PMID:16151019","GOC:BHF","GO_REF:0000058","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of cytoskeleton organization","termid":"GO:0051495"},{"relation_name":"is_a","term_name":"positive regulation of organelle assembly","termid":"GO:1902117"},{"relation_name":"is_a","term_name":"positive regulation of supramolecular fiber organization","termid":"GO:1902905"},{"relation_name":"is_a","term_name":"regulation of cardiac myofibril assembly","termid":"GO:1905304"},{"relation_name":"positively_regulates","term_name":"cardiac myofibril assembly","termid":"GO:0055003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0030036"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0030036","GO:0007010","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cardiac myofibril assembly","synonyms":[{"name":"activation of cardiac myofibril assembly","type":"narrow"},{"name":"activation of cardiac myofibril development","type":"narrow"},{"name":"activation of cardiac myofibril morphogenesis","type":"narrow"},{"name":"activation of heart myofibril assembly","type":"related"},{"name":"positive regulation of cardiac myofibril development","type":"exact"},{"name":"positive regulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"positive regulation of heart myofibril assembly","type":"related"},{"name":"up regulation of cardiac myofibril assembly","type":"exact"},{"name":"up regulation of cardiac myofibril development","type":"exact"},{"name":"up regulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"up regulation of heart myofibril assembly","type":"related"},{"name":"up-regulation of cardiac myofibril assembly","type":"exact"},{"name":"up-regulation of cardiac myofibril development","type":"exact"},{"name":"up-regulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"up-regulation of heart myofibril assembly","type":"related"},{"name":"upregulation of cardiac myofibril assembly","type":"exact"},{"name":"upregulation of cardiac myofibril development","type":"exact"},{"name":"upregulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"upregulation of heart myofibril assembly","type":"related"}],"termid":"GO:1905306"}


id: MONDO:0000587
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autoimmune form of otorhinolaryngologic disease.","definition_xrefs":["MONDO:patterns/autoimmune"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"},{"relation_name":"is_a","term_name":"otorhinolaryngologic disease","termid":"MONDO:0024623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune disease of ear, nose and throat","secondary_identifiers":["DOID:0060030"],"synonyms":[{"name":"autoimmune disease of eyes, ear, nose and throat","type":"related"},{"name":"autoimmune otorhinolaryngologic disease","type":"exact"}],"termid":"MONDO:0000587","xrefs":{"Monarch":{"xref_id":"0000587"}}}


id: PBO:0067459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 584, pseudogene","termid":"PBO:0067459"}


id: MONDO:0012271
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mesoaxial synostotic syndactyly (MSSD) with phalangeal reduction is a novel and distinct form of non-syndromic syndactyly including complete syndactyly of the 3rd and 4th fingers with synostoses of the corresponding metacarpals and associated single phalanges, syndactyly of the 2nd and 3rd toes and 5th finger clinodactyly.","definition_xrefs":["Orphanet:157801"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic syndactyly","termid":"MONDO:0019530"},{"relation_name":"is_a","term_name":"polydactyly-syndactyly-triphalangism","termid":"MONDO:0800066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesoaxial synostotic syndactyly with phalangeal reduction","secondary_identifiers":["OMIM:609432","GARD:10590","SCTID:724170007","MESH:C563721","UMLS:C1836206","MEDGEN:324459"],"synonyms":[{"name":"MSSD","type":"exact"},{"name":"syndactyly Malik-Percin type","type":"related"},{"name":"syndactyly mesoaxial synostotic with phalangeal reduction","type":"related"},{"name":"syndactyly type 9","type":"exact"},{"name":"syndactyly, Malik-Percin type","type":"exact"},{"name":"syndactyly, mesoaxial synostotic, with phalangeal reduction","type":"related"},{"name":"syndactyly, type 9","type":"related"}],"termid":"MONDO:0012271","xrefs":{"Monarch":{"xref_id":"0012271"}}}


id: GO:0055122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low light intensity stimulus. A very low light intensity stimulus is defined as a level of electromagnetic radiation below 0.001 mmol/m2/sec.","definition_xrefs":["GOC:mtg_far_red"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to light intensity","termid":"GO:0009642"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to very low light intensity stimulus","termid":"GO:0055122"}


id: PBO:0000665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Gsk3","termid":"PBO:0000665"}


id: GO:1903426
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of reactive oxygen species biosynthetic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:24252804","GOC:PARL","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"is_a","term_name":"regulation of reactive oxygen species metabolic process","termid":"GO:2000377"},{"relation_name":"regulates","term_name":"reactive oxygen species biosynthetic process","termid":"GO:1903409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of reactive oxygen species biosynthetic process","synonyms":[{"name":"regulation of ROS formation","type":"related"},{"name":"regulation of ROS generation","type":"related"},{"name":"regulation of reactive oxygen species anabolism","type":"exact"},{"name":"regulation of reactive oxygen species biosynthesis","type":"exact"},{"name":"regulation of reactive oxygen species formation","type":"exact"},{"name":"regulation of reactive oxygen species generation","type":"related"},{"name":"regulation of reactive oxygen species synthesis","type":"exact"}],"termid":"GO:1903426"}


id: GO:0050312
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-sulfoacetaldehyde + H2O = acetate + sulfite.","definition_xrefs":["EC:4.4.1.12","MetaCyc:SULFOACETALDEHYDE-LYASE-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete sulfoacetaldehyde lyase activity (obsolete GO:0050312)","synonyms":[{"name":"sulphoacetaldehyde lyase activity","type":"exact"}],"termid":"GO:0050312"}


id: GO:0045445
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into striated muscle fibers.","definition_xrefs":["CL:0000056","GOC:go_curators","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"muscle structure development","termid":"GO:0061061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast differentiation","synonyms":[{"name":"myoblast cell differentiation","type":"exact"}],"termid":"GO:0045445"}


id: PBO:0044453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily F member 32, pseudogene","termid":"PBO:0044453"}


id: PBO:0089863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid elongase Elo1","termid":"PBO:0089863"}


id: FYPO:0001427
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of mitotic DNA replication is abnormal, resulting in a single round of rereplication of the entire genome, which takes place more slowly than normal replication.","definition_xrefs":["PomBase:mah","PMID:10388806"],"direct_ancestors":[{"relation_name":"has_output","term_name":"DNA content increased during vegetative growth","termid":"FYPO:0000158"},{"relation_name":"is_a","term_name":"abnormal negative regulation of mitotic DNA replication initiation","termid":"FYPO:0000216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in slow rereplication","synonyms":[{"name":"abnormal negative regulation of DNA replication initiation during vegetative growth, resulting in slow rereplication","type":"exact"},{"name":"abnormal negative regulation of DNA replication initiation resulting in slow rereplication during mitotic cell cycle","type":"related"},{"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in slow re-replication","type":"exact"},{"name":"slow mitotic DNA re-replication","type":"related"},{"name":"slow mitotic DNA rereplication","type":"related"}],"termid":"FYPO:0001427"}


id: PBO:0028076
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-incomplete_mitotic_sister_chromatid_segregation,_with_unseparated_DNA","termid":"PBO:0028076"}


id: PBO:0000912
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inferred from genetic map position","termid":"PBO:0000912"}


id: GO:0071179
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of the intracellular domain of Notch1 (ICN1), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling.","definition_xrefs":["PMID:12370315"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"MAML3-RBP-Jkappa-ICN1 complex","synonyms":[{"name":"MAML3-RBP-Jkappa-Notch1 complex","type":"exact"}],"termid":"GO:0071179"}


id: GO:0035477
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of angioblast cell migration involved in selective angioblast sprouting.","definition_xrefs":["GOC:dgh","PMID:19815777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"is_a","term_name":"regulation of cell migration","termid":"GO:0030334"},{"relation_name":"is_a","term_name":"regulation of vasculature development","termid":"GO:1901342"},{"relation_name":"regulates","term_name":"angioblast cell migration involved in selective angioblast sprouting","termid":"GO:0035475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of angioblast cell migration involved in selective angioblast sprouting","termid":"GO:0035477"}


id: GO:0010152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The final stages of microgametogenesis after the trinucleate stage has been reached resulting in viable pollen grains.","definition_xrefs":["PMID:11595796"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental maturation","termid":"GO:0021700"},{"relation_name":"part_of","term_name":"pollen development","termid":"GO:0009555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pollen maturation","termid":"GO:0010152"}


id: PBO:0003781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial recombinase Mhr1 (predicted)","termid":"PBO:0003781"}


id: MONDO:0035738
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"factor VII deficiency","termid":"MONDO:0002244"},{"relation_name":"is_a","term_name":"acquired coagulation factor deficiency","termid":"MONDO:0020599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"acquired factor VII deficiency","secondary_identifiers":["UMLS:C4331989","MEDGEN:1388639","NCIT:C131625","GARD:22409","Orphanet:599495"],"termid":"MONDO:0035738","xrefs":{"Monarch":{"xref_id":"0035738"}}}


id: GO:0106383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process which produces a dAMP from derivatives of it, without de novo synthesis.","definition_xrefs":["PMID:21829339","PMID:6605343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dAMP biosynthetic process","termid":"GO:0006170"},{"relation_name":"is_a","term_name":"purine deoxyribonucleotide salvage","termid":"GO:0106381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"dAMP salvage","termid":"GO:0106383"}


id: PBO:0091349
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rec12 is released from double-strand breaks covalently bound to oligonucleotides 17-27 nt long","termid":"PBO:0091349"}


id: PBO:0013825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystathionine gamma-synthase Met3 (predicted)","termid":"PBO:0013825"}


id: GO:0008061
data:
  {"annotated_genes":["SJAG_03013","SJAG_00620"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66893,91534],"is_not":false,"summary":null,"term":"GO:0008061"}]},"cv_name":"molecular_function","definition":"Binding to chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative binding","termid":"GO:0097367"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00620":null,"SJAG_03013":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"chitin binding","references_by_uniquename":{"GO_REF:0000043":null,"GO_REF:0000107":null},"termid":"GO:0008061","terms_by_termid":{"GO:0008061":null}}


id: PBO:0117054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NACC1 antisense RNA 1","termid":"PBO:0117054"}


id: GO:1904699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of acinar cell proliferation.","definition_xrefs":["PMID:9788538","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of epithelial cell proliferation","termid":"GO:0050679"},{"relation_name":"is_a","term_name":"regulation of acinar cell proliferation","termid":"GO:1904697"},{"relation_name":"positively_regulates","term_name":"acinar cell proliferation","termid":"GO:1990863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of acinar cell proliferation","synonyms":[{"name":"activation of acinar cell proliferation","type":"narrow"},{"name":"activation of acinic cell proliferation","type":"narrow"},{"name":"activation of acinous cell proliferation","type":"narrow"},{"name":"positive regulation of acinic cell proliferation","type":"exact"},{"name":"positive regulation of acinous cell proliferation","type":"exact"},{"name":"up regulation of acinar cell proliferation","type":"exact"},{"name":"up regulation of acinic cell proliferation","type":"exact"},{"name":"up regulation of acinous cell proliferation","type":"exact"},{"name":"up-regulation of acinar cell proliferation","type":"exact"},{"name":"up-regulation of acinic cell proliferation","type":"exact"},{"name":"up-regulation of acinous cell proliferation","type":"exact"},{"name":"upregulation of acinar cell proliferation","type":"exact"},{"name":"upregulation of acinic cell proliferation","type":"exact"},{"name":"upregulation of acinous cell proliferation","type":"exact"}],"termid":"GO:1904699"}


id: GO:0050764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phagocytosis, the process in which phagocytes engulf external particulate material.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocytosis","termid":"GO:0030100"},{"relation_name":"regulates","term_name":"phagocytosis","termid":"GO:0006909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"regulation of phagocytosis","termid":"GO:0050764"}


id: PBO:0001721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"electron transfer flavoprotein beta subunit (predicted)","termid":"PBO:0001721"}


id: PBO:0039024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AGAP1 intronic transcript 1","termid":"PBO:0039024"}


id: MONDO:0005970
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pneumonia caused by infections with bacteria of the genus staphylococcus, usually with staphylococcus aureus.","definition_xrefs":["MESH:D011023"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial pneumonia","termid":"MONDO:0004652"},{"relation_name":"is_a","term_name":"staphylococcal infection","termid":"MONDO:0024313"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"staphylococcal pneumonia","secondary_identifiers":["MEDGEN:18532","SCTID:22754005","UMLS:C0032308","ICD9:482.49","EFO:0007496","ICD9:482.40","ICD9:482.4"],"synonyms":[{"name":"Staphylococcus caused pneumonia","type":"exact"},{"name":"Staphylococcus pneumonia","type":"exact"}],"termid":"MONDO:0005970","xrefs":{"Monarch":{"xref_id":"0005970"}}}


id: PBO:0089871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine decarboxylase T subunit","termid":"PBO:0089871"}


id: PBO:0062881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OTX2 pseudogene 2","termid":"PBO:0062881"}


id: GO:1902038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hematopoietic stem cell differentiation.","definition_xrefs":["GOC:TermGenie","PMID:23403623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of hematopoietic progenitor cell differentiation","termid":"GO:1901534"},{"relation_name":"is_a","term_name":"regulation of hematopoietic stem cell differentiation","termid":"GO:1902036"},{"relation_name":"is_a","term_name":"positive regulation of stem cell differentiation","termid":"GO:2000738"},{"relation_name":"positively_regulates","term_name":"hematopoietic stem cell differentiation","termid":"GO:0060218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hematopoietic stem cell differentiation","synonyms":[{"name":"activation of haematopoietic stem cell differentiation","type":"narrow"},{"name":"activation of haemopoietic stem cell differentiation","type":"narrow"},{"name":"activation of hematopoietic stem cell differentiation","type":"narrow"},{"name":"activation of hemopoietic stem cell differentiation","type":"narrow"},{"name":"positive regulation of haematopoietic stem cell differentiation","type":"exact"},{"name":"positive regulation of haemopoietic stem cell differentiation","type":"exact"},{"name":"positive regulation of hemopoietic stem cell differentiation","type":"exact"},{"name":"up regulation of haematopoietic stem cell differentiation","type":"exact"},{"name":"up regulation of haemopoietic stem cell differentiation","type":"exact"},{"name":"up regulation of hematopoietic stem cell differentiation","type":"exact"},{"name":"up regulation of hemopoietic stem cell differentiation","type":"exact"},{"name":"up-regulation of haematopoietic stem cell differentiation","type":"exact"},{"name":"up-regulation of haemopoietic stem cell differentiation","type":"exact"},{"name":"up-regulation of hematopoietic stem cell differentiation","type":"exact"},{"name":"up-regulation of hemopoietic stem cell differentiation","type":"exact"},{"name":"upregulation of haematopoietic stem cell differentiation","type":"exact"},{"name":"upregulation of haemopoietic stem cell differentiation","type":"exact"},{"name":"upregulation of hematopoietic stem cell differentiation","type":"exact"},{"name":"upregulation of hemopoietic stem cell differentiation","type":"exact"}],"termid":"GO:1902038"}


id: PBO:0053551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 558","termid":"PBO:0053551"}


id: GO:0005541
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Interacting selectively with acyl-CoA or acyl, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group, or any group formally derived by removal of a hydroxyl group from the acid function of an organic acid.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete acyl-CoA or acyl binding (obsolete GO:0005541)","synonyms":[{"name":"acyl-CoA or acyl binding","type":"exact"}],"termid":"GO:0005541"}


id: MONDO:0003693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm characterized by the presence of cystic glandular and fibrous tissues and clear cells.","definition_xrefs":["NCIT:C8988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clear cell adenofibroma","termid":"MONDO:0003460"},{"relation_name":"is_a","term_name":"cystadenofibroma","termid":"MONDO:0003464"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clear cell cystadenofibroma","secondary_identifiers":["DOID:5895","UMLS:C1377853","MEDGEN:235121"],"synonyms":[{"name":"clear cell cystadenofibroma","type":"exact"}],"termid":"MONDO:0003693","xrefs":{"Monarch":{"xref_id":"0003693"}}}


id: GO:0032560
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a guanyl deoxyribonucleotide, any compound consisting of guanosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanyl nucleotide binding","termid":"GO:0019001"},{"relation_name":"is_a","term_name":"purine deoxyribonucleotide binding","termid":"GO:0032554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"guanyl deoxyribonucleotide binding","termid":"GO:0032560"}


id: PBO:0036119
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_spindle_assembly_checkpoint","termid":"PBO:0036119"}


id: PBO:0056660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 27","termid":"PBO:0056660"}


id: PBO:0005667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DASH complex subunit Spc19","termid":"PBO:0005667"}


id: PBO:0062476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily G member 15 pseudogene","termid":"PBO:0062476"}


id: GO:0051900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the change in the membrane potential of the mitochondria from negative to positive.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane depolarization","termid":"GO:0003254"},{"relation_name":"is_a","term_name":"regulation of mitochondrial membrane potential","termid":"GO:0051881"},{"relation_name":"regulates","term_name":"mitochondrial depolarization","termid":"GO:0051882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mitochondrial depolarization","termid":"GO:0051900"}


id: MONDO:0008125
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited isolated nail anomaly","termid":"MONDO:0019284"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nonsyndromic congenital nail disorder 5","secondary_identifiers":["OMIM:164800","MESH:C563503","UMLS:C1833909","DOID:0080083","MEDGEN:318994"],"synonyms":[{"name":"NDNC5","type":"related"},{"name":"nail disorder, nonsyndromic congenital, 5","type":"related"},{"name":"nonsyndromic congenital nail disorder type 5","type":"exact"},{"name":"onycholysis, hereditary distal","type":"related"},{"name":"onycholysis, partial, with scleronychia","type":"related"}],"termid":"MONDO:0008125","xrefs":{"Monarch":{"xref_id":"0008125"}}}


id: SO:0000326
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A short diagnostic sequence tag, serial analysis of gene expression (SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts.","direct_ancestors":[{"relation_name":"is_a","term_name":"tag","termid":"SO:0000324"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGE_tag","synonyms":[{"name":"SAGE tag","type":"exact"}],"termid":"SO:0000326"}


id: PATO:0001079
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001079 absolute work (obsolete PATO:0001079)","termid":"PATO:0001079"}


id: PBO:0012838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41","termid":"PBO:0012838"}


id: PBO:0028092
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_multiple_cell_divisions,_unequal_chromosome_segregation","termid":"PBO:0028092"}


id: PBO:0031357
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_caffeine","termid":"PBO:0031357"}


id: PBO:0081955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zona pellucida glycoprotein 2","termid":"PBO:0081955"}


id: PBO:0077698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tankyrase 2","termid":"PBO:0077698"}


id: FYPO:0004614
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule, is abnormal.","definition_xrefs":["GO:0046785","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein-containing complex assembly","termid":"FYPO:0000447"},{"relation_name":"is_a","term_name":"abnormal microtubule dynamics during vegetative growth","termid":"FYPO:0000901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000054","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal microtubule polymerization during vegetative growth","synonyms":[{"name":"abnormal microtubule growth","type":"exact"},{"name":"abnormal microtubule polymerisation","type":"exact"},{"name":"abnormal microtubule polymerisation during vegetative growth","type":"exact"},{"name":"abnormal microtubule polymerization during mitotic cell cycle","type":"related"},{"name":"abnormal microtubule rescue","type":"related"}],"termid":"FYPO:0004614"}


id: PR:Q9UTJ3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- meu1-1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTJ3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic expression up-regulated protein 1/2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1556.06","synonyms":[{"name":"Spom972h-meu1-1","type":"exact"}],"termid":"PR:Q9UTJ3"}


id: MONDO:0017074
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myelomeningocele","termid":"MONDO:0019773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"cervicothoracic spina bifida cystica","secondary_identifiers":["GARD:20963","Orphanet:268766"],"termid":"MONDO:0017074","xrefs":{"Monarch":{"xref_id":"0017074"}}}


id: PBO:0063999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 33","termid":"PBO:0063999"}


id: GO:1900391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of cAMP-mediated signaling.","definition_xrefs":["PMID:15448137","GOC:mah","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cAMP-mediated signaling by regulation of transcription from RNA polymerase II promoter (obsolete GO:1900391)","synonyms":[{"name":"regulation of cAMP-mediated signalling by regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900391"}


id: GO:0021852
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a pyramidal neuron precursor from the ventricular zone to the correct layer of the cerebral cortex.","definition_xrefs":["GO_REF:0000021","GOC:dgh","GOC:cls","PMID:12626695","GOC:jid","GOC:dph","PMID:22192824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral cortex radial glia-guided migration","termid":"GO:0021801"},{"relation_name":"is_a","term_name":"radial glia-guided pyramidal neuron migration","termid":"GO:0140650"},{"relation_name":"part_of","term_name":"pyramidal neuron development","termid":"GO:0021860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pyramidal neuron migration to cerebral cortex","synonyms":[{"name":"projection neuron migration","type":"related"},{"name":"pyramidal neuron migration","type":"broad"}],"termid":"GO:0021852"}


id: PBO:0069029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 274, pseudogene","termid":"PBO:0069029"}


id: PBO:0067046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 66, pseudogene","termid":"PBO:0067046"}


id: MONDO:0001096
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A ganglioneuroblastoma arising from the mediastinum.","definition_xrefs":["NCIT:C6627"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"mediastinal cancer","termid":"MONDO:0005843"},{"relation_name":"is_a","term_name":"mediastinum neuroblastoma","termid":"MONDO:0001095"},{"relation_name":"is_a","term_name":"peripheral ganglioneuroblastoma","termid":"MONDO:0003327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"mediastinum ganglioneuroblastoma","secondary_identifiers":["DOID:10661","UMLS:C1334653","MEDGEN:235308"],"synonyms":[{"name":"ganglioneuroblastoma (disease) of mediastinum","type":"exact"},{"name":"ganglioneuroblastoma of mediastinum","type":"exact"},{"name":"ganglioneuroblastoma of the mediastinum","type":"exact"},{"name":"mediastinal ganglioneuroblastoma","type":"exact"},{"name":"mediastinum ganglioneuroblastoma (disease)","type":"exact"}],"termid":"MONDO:0001096","xrefs":{"Monarch":{"xref_id":"0001096"}}}


id: PBO:0039891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 45","termid":"PBO:0039891"}


id: MONDO:0033637
data:
  {"annotated_genes":["SJAG_02504"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85511],"is_not":false,"summary":null,"term":"MONDO:0033637"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex IV deficiency, nuclear-type","termid":"MONDO:0033885"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02504":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial complex 4 deficiency, nuclear type 7","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5436685","GARD:16406","DOID:0070494","MEDGEN:1754683","OMIM:619051"],"synonyms":[{"name":"MC4DN7","type":"exact"},{"name":"mitochondrial complex IV deficiency, nuclear type 7","type":"exact"}],"termid":"MONDO:0033637","terms_by_termid":{"MONDO:0033637":null},"xrefs":{"Monarch":{"xref_id":"0033637"}}}


id: PBO:0049745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemoglobin subunit mu","termid":"PBO:0049745"}


id: MONDO:0012914
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"1q21.1 microdeletion syndrome is a newly described recurrent deletion syndrome with variable clinical manifestations but without the clinical picture of thrombocytopenia - absent radius (TAR) syndrome.","definition_xrefs":["Orphanet:250989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 1q deletion","termid":"MONDO:0022756"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1q21.1 deletion syndrome","secondary_identifiers":["GARD:10813","UMLS:C2675897","DECIPHER:62","ICD9:758.33","OMIM:612474","SCTID:699305004","MEDGEN:393913","DOID:0060411"],"synonyms":[{"name":"1q21.1 microdeletion","type":"related"},{"name":"1q21.1 microdeletion syndrome","type":"exact"},{"name":"1q21.1 recurrent microdeletion (susceptibility locus for neurodevelopmental disorders)","type":"exact"},{"name":"Del(1)(q21)","type":"exact"},{"name":"chromosome 1q21.1 deletion syndrome, 1.35-MB","type":"related"},{"name":"chromosome 1q21.1 deletion syndrome, isolated cases","type":"exact"},{"name":"chromosome 1q21.1 microdeletion syndrome","type":"related"},{"name":"monosomy 1q21.1","type":"exact"}],"termid":"MONDO:0012914","xrefs":{"Monarch":{"xref_id":"0012914"}}}


id: GO:0046802
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of an assembled viral particle out of the host cell nucleus by budding and fusion through the nuclear membranes. In this process, enveloped viral particles are formed by budding through the inner nuclear membrane. These perinuclear enveloped particles then fuse with the outer nuclear membrane to deliver a naked capsid into the host cytoplasm.","definition_xrefs":["PMID:9601512","PMID:21494278","VZ:1952","PMID:22858153","PMID:9765421"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exit of virus from host cell nucleus","termid":"GO:0039674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"exit of virus from host cell nucleus by nuclear egress","secondary_identifiers":["GO:0039676"],"synonyms":[{"name":"capsid egress","type":"exact"},{"name":"egress of viral procapsid from host cell nucleus","type":"related"},{"name":"nuclear egress","type":"exact"},{"name":"nuclear egress of viral procapsid","type":"exact"}],"termid":"GO:0046802"}


id: PBO:0052918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 19-1","termid":"PBO:0052918"}


id: MONDO:0011022
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Potocki-Shaffer syndrome is characterized by multiple exostoses, parietal foramina, enlargement of the anterior fontanelle and occasionally intellectual deficit and mild cranio-facial anomalies. To date, 23 individuals from 14 families have been reported. The syndrome is caused by contiguous gene deletions on the short arm of chromosome 11 (11p11.2).","definition_xrefs":["Orphanet:52022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"},{"relation_name":"is_a","term_name":"partial deletion of the short arm of chromosome 11","termid":"MONDO:0016893"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Potocki-Shaffer syndrome","secondary_identifiers":["MESH:C538356","MEDGEN:318657","DOID:0111687","GARD:9762","SCTID:702346005","icd11.foundation:1587521558","NCIT:C75456","OMIM:601224","UMLS:C1832588","DECIPHER:34","ICD9:758.39"],"synonyms":[{"name":"11p11.2 deletion","type":"exact"},{"name":"Defect11 syndrome","type":"related"},{"name":"PSS","type":"related"},{"name":"Potocki-Shaffer syndrome","type":"exact"},{"name":"chromosome 11P11.2 deletion syndrome","type":"related"},{"name":"deletion of chromosome 11p11.2","type":"related"},{"name":"proximal 11P deletion syndrome","type":"related"},{"name":"proximal 11p deletion syndrome","type":"exact"}],"termid":"MONDO:0011022","xrefs":{"Monarch":{"xref_id":"0011022"}}}


id: PR:Q1MTN3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pic1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q1MTN3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inner centromere protein-related protein pic1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC336.15","synonyms":[{"name":"INCENP-related protein pic1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pic1","type":"exact"}],"termid":"PR:Q1MTN3"}


id: PBO:0071356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 15","termid":"PBO:0071356"}


id: PBO:0061190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuromedin U","termid":"PBO:0061190"}


id: GO:0060313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of blood vessel remodeling, the reorganization or renovation of existing blood vessels.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of tissue remodeling","termid":"GO:0034104"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of blood vessel remodeling","termid":"GO:0060312"},{"relation_name":"negatively_regulates","term_name":"blood vessel remodeling","termid":"GO:0001974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of blood vessel remodeling","synonyms":[{"name":"down-regulation of blood vessel remodeling","type":"exact"},{"name":"inhibition of blood vessel remodeling","type":"narrow"},{"name":"negative regulation of blood vessel remodelling","type":"exact"}],"termid":"GO:0060313"}


id: PBO:0055527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2961","termid":"PBO:0055527"}


id: PBO:0027731
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_cellular_response_to_calcium_ion","termid":"PBO:0027731"}


id: GO:0030146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of renal water excretion.","definition_xrefs":["ISBN:0198506732","GOC:mtg_cardio","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete diuresis (obsolete GO:0030146)","secondary_identifiers":["Wikipedia:Diuresis"],"synonyms":[{"name":"diuresis","type":"exact"},{"name":"positive regulation of renal water excretion","type":"exact"},{"name":"renal water excretion","type":"broad"}],"termid":"GO:0030146"}


id: PBO:0050699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 12B","termid":"PBO:0050699"}


id: PBO:0087736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the SMC5-SMC6 complex; the SMC5-SMC6 complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; binds single-stranded DNA and has ATPase activity; supports nucleolar function; S. pombe homolog forms a heterodimer with S. pombe Rad18p that is involved in DNA repair","termid":"PBO:0087736"}


id: GO:1990009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a retinal cell.","definition_xrefs":["PMID:15558487","GOC:mtg_apoptosis","PMID:24664675"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process","termid":"GO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal cell apoptotic process","secondary_identifiers":["GO:0046674"],"synonyms":[{"name":"induction of retinal programmed cell death","type":"related"}],"termid":"GO:1990009"}


id: FYPO:0001840
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which minichromosomes are lost at a higher frequency than normal during the vegetative growth phase of the life cycle. Minichromosome loss occurs when one or both daughter cells do not inherit copies of a minichromosome from the mother cell, and may result from failure of minichromosome replication or segregation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vegetative cell phenotype","termid":"FYPO:0001320"},{"relation_name":"is_a","term_name":"increased minichromosome loss","termid":"FYPO:0001859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased minichromosome loss during vegetative growth","synonyms":[{"name":"increased minichromosome loss during mitotic cell cycle","type":"related"},{"name":"mitotic minichromosome maintenance defect","type":"related"}],"termid":"FYPO:0001840"}


id: MONDO:0014446
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Bardet-Biedl syndrome in which the cause of the disease is a mutation in the BBIP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bardet-Biedl syndrome","termid":"MONDO:0015229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Bardet-Biedl syndrome 18","secondary_identifiers":["OMIM:615995","GARD:16042","UMLS:C3806174","DOID:0110140","MEDGEN:812504"],"synonyms":[{"name":"BBIP1 Bardet-Biedl syndrome","type":"exact"},{"name":"BBS18","type":"exact"},{"name":"Bardet-Biedl syndrome 18","type":"exact"},{"name":"Bardet-Biedl syndrome caused by mutation in BBIP1","type":"exact"},{"name":"Bardet-Biedl syndrome type 18","type":"exact"}],"termid":"MONDO:0014446","xrefs":{"Monarch":{"xref_id":"0014446"}}}


id: GO:0160138
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: uridine(2604) in 23S rRNA = pseudouridine(2604) in 23S rRNA.","definition_xrefs":["EC:5.4.99.21","RHEA:38875"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA pseudouridine synthase activity","termid":"GO:0120159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0140098","GO:0003824"],"is_obsolete":false,"name":"23S rRNA pseudouridine(2604) synthase activity","termid":"GO:0160138"}


id: PBO:0013073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing associated factor Saf4","termid":"PBO:0013073"}


id: PBO:0071436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 42","termid":"PBO:0071436"}


id: PBO:0004162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule affinity-regulating kinase Kin1","termid":"PBO:0004162"}


id: GO:0052100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which single-celled organisms of the same species monitor population density by detecting the concentration of small, diffusible signal molecules.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete intraspecies quorum sensing (obsolete GO:0052100)","termid":"GO:0052100"}


id: MONDO:0011708
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the TMC1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 36","secondary_identifiers":["MEDGEN:376173","UMLS:C1847626","OMIM:606705","MESH:C564675","DOID:0110563","GARD:18115"],"synonyms":[{"name":"DFNA36","type":"narrow"},{"name":"TMC1 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"autosomal dominant deafness 36","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 36","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in TMC1","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 36","type":"narrow"},{"name":"deafness, autosomal dominant 36","type":"narrow"},{"name":"deafness, autosomal dominant type 36","type":"narrow"}],"termid":"MONDO:0011708","xrefs":{"Monarch":{"xref_id":"0011708"}}}


id: GO:0009952
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.","definition_xrefs":["GOC:tb","GOC:go_curators","GOC:isa_complete","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior/posterior pattern specification","synonyms":[{"name":"anterior/posterior pattern formation","type":"related"}],"termid":"GO:0009952"}


id: MONDO:0009874
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Rabson-Mendenhall syndrome belongs to the group of extreme insulin-resistance syndromes (which also includes leprechaunism, the lipodystrophies, and the type A and B insulin resistance syndromes).","definition_xrefs":["Orphanet:769"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"diabetes mellitus","termid":"MONDO:0005015"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"hypertrichosis","termid":"MONDO:0019280"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rabson-Mendenhall syndrome","secondary_identifiers":["MEDGEN:78783","GARD:226","SCTID:33559001","MESH:D056731","UMLS:C0271695","NCIT:C131000","icd11.foundation:1018973126","OMIM:262190","ICD9:259.8","NORD:1645"],"synonyms":[{"name":"Mendenhall syndrome","type":"related"},{"name":"Rabson-Mendenhall syndrome","type":"exact"},{"name":"pineal hyperplasia, insulin-resistant diabetes mellitus, and somatic abnormalities","type":"related"}],"termid":"MONDO:0009874","xrefs":{"Monarch":{"xref_id":"0009874"}}}


id: PBO:0074697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 70G","termid":"PBO:0074697"}


id: GO:0047972
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-guanidinopropanoate + H2O = beta-alanine + urea.","definition_xrefs":["EC:3.5.3.17","RHEA:16029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"guanidinopropionase activity","secondary_identifiers":["KEGG_REACTION:R00913","MetaCyc:GUANIDINOPROPIONASE-RXN"],"synonyms":[{"name":"3-guanidinopropanoate amidinopropionase activity","type":"related"},{"name":"GPH","type":"related"},{"name":"GPase activity","type":"related"}],"termid":"GO:0047972"}


id: GO:0044616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism induces paralysis, the loss of the ability to voluntarily control muscles, in another organism by blocking nerve signals or directly interfering with muscle contraction mechanisms.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"envenomation perturbing biological process","termid":"GO:0035738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"envenomation resulting in paralysis in another organism","synonyms":[{"name":"modulation of relaxation of muscle in another organism","type":"related"},{"name":"modulation of relaxation of muscle in other organism","type":"exact"},{"name":"regulation of relaxation of muscle in other organism","type":"exact"}],"termid":"GO:0044616"}


id: FYPO:0007927
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to dihydrocoumarin. Cells stop growing (and may die) at a concentration of dihydrocoumarin that allows wild type cells to grow.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0002683","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to dihydrocoumarin","synonyms":[{"name":"sensitive to dihydrocoumarin during vegetative growth","type":"exact"}],"termid":"FYPO:0007927"}


id: PBO:0065031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 6","termid":"PBO:0065031"}


id: PBO:0087050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L23B; homologous to mammalian ribosomal protein L23 and bacterial L14; RPL23B has a paralog, RPL23A, that arose from the whole genome duplication","termid":"PBO:0087050"}


id: PR:Q8NIL3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An uncharacterized isomerase YddE that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02323","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antisense-enhancing sequence 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB21E7.07","secondary_identifiers":["UniProtKB:Q8NIL3"],"synonyms":[{"name":"AES factor 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-yddE","type":"exact"}],"termid":"PR:Q8NIL3"}


id: PBO:0003290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermidine family transporter (predicted)","termid":"PBO:0003290"}


id: PBO:0069965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1260, pseudogene","termid":"PBO:0069965"}


id: FYPO:0000565
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of cellular respiration is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular respiration","termid":"FYPO:0000078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular respiration","synonyms":[{"name":"increased cellular respiration during mitotic cell cycle","type":"related"},{"name":"increased cellular respiration during vegetative growth","type":"exact"},{"name":"increased respiration","type":"broad"},{"name":"increased respiratory metabolism","type":"exact"},{"name":"respiratory metabolism: increased","type":"related"}],"termid":"FYPO:0000565"}


id: PBO:0087273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Set3C histone deacetylase scaffold; can act as prion [ESI+] (Expressed Subtelomeric Information) that drives emergence and transgenerational inheritance of activated chromatin state; prion conformer is triggered by transient Snt1p phosphorylation upon cell cycle arrest; [ESI+] reshapes the activity Set3C, recruiting RNAPII, interfering with Rap1p binding to activate genes in otherwise repressed subtelomeric domains; relocalizes to cytosol in response to hypoxia","termid":"PBO:0087273"}


id: PBO:0061963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily A member 42","termid":"PBO:0061963"}


id: GO:0071352
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-2 stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to interleukin-2","termid":"GO:0070669"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to interleukin-2","synonyms":[{"name":"cellular response to IL-2","type":"exact"}],"termid":"GO:0071352"}


id: PBO:0087250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine-threonine protein kinase; component of a glucose-sensing system that inhibits growth in response to glucose availability; upon nutrient deprivation Yak1p phosphorylates Pop2p to regulate mRNA deadenylation, the co-repressor Crf1p to inhibit transcription of ribosomal genes, and the stress-responsive transcription factors Hsf1p and Msn2p; nuclear localization negatively regulated by the Ras/PKA signaling pathway in the presence of glucose","termid":"PBO:0087250"}


id: MONDO:0000985
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ehrlichiosis (obsolete MONDO:0000985)","termid":"MONDO:0000985","xrefs":{"Monarch":{"xref_id":"0000985"}}}


id: PBO:0060245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYC binding protein 2","termid":"PBO:0060245"}


id: PBO:0087663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the import motor (PAM complex); the PAM complex is a  component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); forms a 1:1 subcomplex with Pam18p and inhibits its cochaperone activity; contains a J-like domain","termid":"PBO:0087663"}


id: PBO:0056870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MICALL2 divergent transcript","termid":"PBO:0056870"}


id: MONDO:0016333
data:
  {"annotated_genes":["SJAG_01240","SJAG_03703","SJAG_04621","SJAG_03145","SJAG_04231","SJAG_MIT13","SJAG_MIT15","SJAG_01209","SJAG_02611","SJAG_01671","SJAG_03815","SJAG_02431","SJAG_01754","SJAG_04567","SJAG_01139","SJAG_MIT03","SJAG_01322","SJAG_02919"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032592"},{"annotations":[86326,86325],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030300"},{"annotations":[85327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859358"},{"annotations":[86143],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957545"},{"annotations":[85654,85655],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008409"},{"annotations":[85963],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012808"},{"annotations":[86234,86233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013198"},{"annotations":[86809],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013339"},{"annotations":[84920,84921,84919],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014073"},{"annotations":[85943],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013261"},{"annotations":[85944,85945],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013262"},{"annotations":[85459],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012556"},{"annotations":[85321,85320,85319],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010788"},{"annotations":[86964],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013968"}]},"cv_name":"mondo","definition":"A a genetic form of heart disease that occurs when heart (cardiac) muscle becomes thin and weakened in at least one chamber of the heart, causing the open area of the chamber to become enlarged (dilated). As a result, the heart is unable to pump blood as efficiently as usual. To compensate, the heart attempts to increase the amount of blood being pumped through the heart, leading to further thinning and weakening of the cardiac muscle. Over time, this condition results in heart failure.","direct_ancestors":[{"relation_name":"is_a","term_name":"dilated cardiomyopathy","termid":"MONDO:0005021"},{"relation_name":"is_a","term_name":"familial cardiomyopathy","termid":"MONDO:0005217"}],"gene_count":18,"genes_by_uniquename":{"SJAG_01139":null,"SJAG_01209":null,"SJAG_01240":null,"SJAG_01322":null,"SJAG_01671":null,"SJAG_01754":null,"SJAG_02431":null,"SJAG_02611":null,"SJAG_02919":null,"SJAG_03145":null,"SJAG_03703":null,"SJAG_03815":null,"SJAG_04231":null,"SJAG_04567":null,"SJAG_04621":null,"SJAG_MIT03":null,"SJAG_MIT13":null,"SJAG_MIT15":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"familial dilated cardiomyopathy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C536231","UMLS:C0340427","GARD:20525","MEDGEN:90951","OMIMPS:115200","Orphanet:217607"],"synonyms":[{"name":"DCM","type":"related"},{"name":"dilated cardiomyopathy, familial","type":"related"},{"name":"hereditary dilated cardiomyopathy","type":"exact"},{"name":"hypokinetic dilated cardiomyopathy, familial","type":"related"},{"name":"idiopathic dilated cardiomyopathy","type":"related"}],"termid":"MONDO:0016333","terms_by_termid":{"MONDO:0008409":null,"MONDO:0010788":null,"MONDO:0012556":null,"MONDO:0012808":null,"MONDO:0013198":null,"MONDO:0013261":null,"MONDO:0013262":null,"MONDO:0013339":null,"MONDO:0013968":null,"MONDO:0014073":null,"MONDO:0030300":null,"MONDO:0032592":null,"MONDO:0859358":null,"MONDO:0957545":null},"xrefs":{"Monarch":{"xref_id":"0016333"}}}


id: PR:Q9UR27
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrpl31 gene.","definition_xrefs":["UniProtKB:Q9UR27","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L31, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16A11.11","synonyms":[{"name":"Spom972h-mrpl31","type":"exact"},{"name":"negative regulator of cdc42 protein nrf20 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UR27"}


id: GO:0075119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of the host G protein-coupled receptor signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by symbiont of host G protein-coupled receptor signal transduction (obsolete GO:0075119)","synonyms":[{"name":"positive regulation by symbiont of host G protein-coupled receptor signal transduction","type":"exact"},{"name":"positive regulation by symbiont of host G-protein coupled receptor protein signal transduction","type":"exact"},{"name":"positive regulation by symbiont of host signal transduction mediated by G-protein alpha subunit","type":"narrow"},{"name":"positive regulation by symbiont of host signal transduction mediated by G-protein beta subunit","type":"narrow"},{"name":"positive regulation by symbiont of host signal transduction mediated by G-protein gamma subunit","type":"narrow"}],"termid":"GO:0075119"}


id: PBO:0074141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member B1","termid":"PBO:0074141"}


id: PBO:0055798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipoprotein(a) like 2, pseudogene","termid":"PBO:0055798"}


id: PBO:0080204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vezatin, adherens junctions transmembrane protein","termid":"PBO:0080204"}


id: PBO:0110983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi localized AP-1 adaptor complex binding protein","termid":"PBO:0110983"}


id: GO:0019831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete chromate sensitivity/resistance (obsolete GO:0019831)","synonyms":[{"name":"chromate sensitivity/resistance","type":"exact"}],"termid":"GO:0019831"}


id: GO:0086069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that mediates interactions between a bundle of His cell and its surroundings that contributes to the process of the bundle of His cell communicating with a Purkinje myocyte in cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell communication involved in cardiac conduction","termid":"GO:0086065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bundle of His cell to Purkinje myocyte communication","synonyms":[{"name":"atrioventricular junction myocyte to bundle branch myocyte","type":"narrow"},{"name":"bundle branch myocyte to Purkinje myocyte communication","type":"narrow"},{"name":"bundle of His cardiac muscle cell to Purkinje myocyte communication","type":"exact"},{"name":"bundle of His myocyte to atrioventricular junction myocyte","type":"narrow"},{"name":"ventricular conduction system cell to cell communication","type":"exact"}],"termid":"GO:0086069"}


id: PBO:0080991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 22","termid":"PBO:0080991"}


id: GO:0017107
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The binding activity of a molecule that brings together an anion exchanger and one or more other molecules, permitting them to function in a coordinated way.","definition_xrefs":["GOC:mtg_MIT_16mar07"],"gene_count":0,"genotype_count":0,"name":"obsolete anion exchanger adaptor activity (obsolete GO:0017107)","termid":"GO:0017107"}


id: PBO:0070362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, Ro60-associated Y5","termid":"PBO:0070362"}


id: CHEBI:27641
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cycloheximide","termid":"CHEBI:27641"}


id: PBO:0064642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pancreatic progenitor cell differentiation and proliferation factor","termid":"PBO:0064642"}


id: GO:0106280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the UDP-N-acetylglucosamine biosynthetic process.","definition_xrefs":["PMID:32579556"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of nucleobase-containing compound metabolic process","termid":"GO:0045935"},{"relation_name":"is_a","term_name":"positive regulation of phosphate metabolic process","termid":"GO:0045937"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of UDP-N-acetylglucosamine biosynthetic process","termid":"GO:0106278"},{"relation_name":"positively_regulates","term_name":"UDP-N-acetylglucosamine biosynthetic process","termid":"GO:0006048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"positively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"positive regulation of UDP-N-acetylglucosamine biosynthetic process","synonyms":[{"name":"positive egulation of UDP-N-acetylglucosamine formation","type":"related"},{"name":"positive regulation of UDP-GlcNAc biosynthetic process","type":"related"},{"name":"positive regulation of UDP-N-acetylglucosamine anabolism","type":"related"},{"name":"positive regulation of UDP-N-acetylglucosamine biosynthesis","type":"related"},{"name":"positive regulation of UDP-N-acetylglucosamine synthesis","type":"related"}],"termid":"GO:0106280"}


id: GO:0060772
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The radial pattern formation process that results in the formation of leaf primordia around the center of a shoot apical meristem.","definition_xrefs":["GOC:sdb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phyllotactic patterning","termid":"GO:0060771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leaf phyllotactic patterning","termid":"GO:0060772"}


id: GO:0035035
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an histone acetyltransferase.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"histone acetyltransferase binding","synonyms":[{"name":"histone acetylase binding","type":"exact"}],"termid":"GO:0035035"}


id: MONDO:0100163
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A inflammatory syndrome in children infected by the SARS-CoV-2 with similarities to Kawasaki disease. Clinical manifestations range from fever and inflammation to myocardial injury, shock, and development of coronary artery aneurysms.","definition_xrefs":["PMID:32630212","PMID:32511692","PMID:32529358"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"multisystem inflammatory syndrome in children and adults","termid":"MONDO:0035375"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COVID-19–associated multisystem inflammatory syndrome in children","secondary_identifiers":["DOID:0080711","NCIT:C172127"],"synonyms":[{"name":"COVID-19 -related paediatric inflammatory multisystem syndrome","type":"exact"},{"name":"COVID-19 -related pediatric inflammatory multisystem syndrome","type":"exact"},{"name":"COVID-19 Kawasaki-like syndrome","type":"exact"},{"name":"COVID-19 associated multisystem inflammatory syndrome in children","type":"exact"},{"name":"MIS-C","type":"exact"},{"name":"PIMS","type":"exact"},{"name":"PIMS-TS","type":"exact"},{"name":"PMIS","type":"exact"},{"name":"SARS-CoV-2 Kawasaki-like syndrome","type":"exact"},{"name":"multisystem inflammatory syndrome in children","type":"exact"},{"name":"multisystem inflammatory syndrome in children associated with COVID-19","type":"exact"},{"name":"multisystem inflammatory syndrome in children associated with coronavirus disease 2019","type":"exact"},{"name":"paediatric inflammatory multisystem syndrome","type":"exact"},{"name":"paediatric inflammatory multisystem syndrome temporally associated with SARS-CoV-2","type":"exact"},{"name":"paediatric inflammatory multisystem syndrome: temporally associated with SARS-CoV-2","type":"exact"},{"name":"paediatric multi-system inflammatory syndrome potentially associated with COVID-19","type":"exact"},{"name":"paediatric multisystem inflammatory syndrome","type":"exact"},{"name":"pediatric inflammatory multisystem syndrome","type":"exact"},{"name":"pediatric inflammatory multisystem syndrome temporally associated with SARS-CoV-2","type":"exact"},{"name":"pediatric inflammatory multisystem syndrome: temporally associated with SARS-CoV-2","type":"exact"},{"name":"pediatric multi-system inflammatory syndrome potentially associated with COVID-19","type":"exact"},{"name":"pediatric multisystem inflammatory syndrome","type":"exact"}],"termid":"MONDO:0100163","xrefs":{"Monarch":{"xref_id":"0100163"}}}


id: GO:0140359
data:
  {"annotated_genes":["SJAG_03497","SJAG_02457","SJAG_02602","SJAG_05213","SJAG_03363","SJAG_03785","SJAG_04277","SJAG_01344","SJAG_03850"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[57869,58242],"is_not":false,"summary":null,"term":"GO:0140359"},{"annotations":[89035],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140481"},{"annotations":[108423],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015410"},{"annotations":[75340],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015421"},{"annotations":[117948,96811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044604"},{"annotations":[117696,95829],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008559"}]},"cv_name":"molecular_function","definition":"Primary active transporter characterized by two nucleotide-binding domains and two transmembrane domains. Uses the energy generated from ATP hydrolysis to drive the transport of a substance across a membrane.","definition_xrefs":["PMID:26517899"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATPase-coupled transmembrane transporter activity","termid":"GO:0042626"}],"gene_count":9,"genes_by_uniquename":{"SJAG_01344":null,"SJAG_02457":null,"SJAG_02602":null,"SJAG_03363":null,"SJAG_03497":null,"SJAG_03785":null,"SJAG_03850":null,"SJAG_04277":null,"SJAG_05213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"ABC-type transporter activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9661405","Reactome:R-HSA-429157","Reactome:R-HSA-5362459","Reactome:R-HSA-266070","TC:3.A.1","Wikipedia:ATP-binding_cassette_transporter","Reactome:R-HSA-9750656","Reactome:R-HSA-5387389"],"synonyms":[{"name":"ABC transporter","type":"exact"},{"name":"ABC-type efflux permease activity","type":"exact"},{"name":"ABC-type efflux porter activity","type":"exact"},{"name":"ABC-type transmembrane transporter activity","type":"exact"},{"name":"ABC-type uptake permease activity","type":"exact"},{"name":"ATP binding cassette transporter","type":"exact"},{"name":"ATP-binding cassette (ABC) transporter activity","type":"exact"},{"name":"ATP-binding cassette transporter","type":"exact"}],"termid":"GO:0140359","terms_by_termid":{"GO:0008559":null,"GO:0015410":null,"GO:0015421":null,"GO:0044604":null,"GO:0140359":null,"GO:0140481":null}}


id: PR:Q9C0V4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBPB7E8.02 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C0V4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein PB7E8.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB7E8.02","synonyms":[{"name":"Spom972h-SPBPB7E8.02","type":"exact"}],"termid":"PR:Q9C0V4"}


id: PBO:0070794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 24","termid":"PBO:0070794"}


id: PATO:0000645
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased size","termid":"PATO:0000587"},{"relation_name":"is_a","term_name":"aplastic/hypoplastic","termid":"PATO:0002290"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypoplastic","secondary_identifiers":["PATO:0000942"],"synonyms":[{"name":"hypoplasia","type":"exact"},{"name":"underdeveloped","type":"related"}],"termid":"PATO:0000645"}


id: MONDO:0850420
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute pancreatitis that is characterized by one or more areas of necrosis in the pancreas with varying degree of involvement of the surrounding tissues or organ systems.","definition_xrefs":["DOID:0080998"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute pancreatitis","termid":"MONDO:0006515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"acute necrotizing pancreatitis","secondary_identifiers":["icd11.foundation:2063881303","MEDGEN:75645","UMLS:C0267941"],"termid":"MONDO:0850420","xrefs":{"Monarch":{"xref_id":"0850420"}}}


id: PR:Q9Y7U3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gep4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7U3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylglycerophosphatase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC645.02","synonyms":[{"name":"PGP phosphatase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-gep4","type":"exact"}],"termid":"PR:Q9Y7U3"}


id: FYPO:0003217
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the chromatin silencing at the central core of the centromeric regions is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin silencing at centromere central core","termid":"FYPO:0000640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased chromatin silencing at centromere central core","synonyms":[{"name":"decreased chromatin silencing at centromere central core during mitotic cell cycle","type":"related"},{"name":"decreased chromatin silencing at centromere central core during vegetative growth","type":"exact"},{"name":"decreased negative regulation of transcription at centromere central core","type":"related"},{"name":"decreased transcriptional repression at centromere central core","type":"related"},{"name":"reduced chromatin silencing at centromere central core","type":"exact"}],"termid":"FYPO:0003217"}


id: GO:0120214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of histidine biosynthetic process.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of histidine biosynthetic process","termid":"GO:0120213"},{"relation_name":"is_a","term_name":"negative regulation of amino acid biosynthetic process","termid":"GO:2000283"},{"relation_name":"negatively_regulates","term_name":"L-histidine biosynthetic process","termid":"GO:0000105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"negative regulation of histidine biosynthetic process","synonyms":[{"name":"down regulation of histidine anabolism","type":"exact"},{"name":"down regulation of histidine biosynthesis","type":"exact"},{"name":"down regulation of histidine biosynthetic process","type":"exact"},{"name":"down regulation of histidine formation","type":"exact"},{"name":"down regulation of histidine synthesis","type":"exact"},{"name":"down-regulation of histidine anabolism","type":"exact"},{"name":"down-regulation of histidine biosynthesis","type":"exact"},{"name":"down-regulation of histidine biosynthetic process","type":"exact"},{"name":"down-regulation of histidine formation","type":"exact"},{"name":"down-regulation of histidine synthesis","type":"exact"},{"name":"downregulation of histidine anabolism","type":"exact"},{"name":"downregulation of histidine biosynthesis","type":"exact"},{"name":"downregulation of histidine biosynthetic process","type":"exact"},{"name":"downregulation of histidine formation","type":"exact"},{"name":"downregulation of histidine synthesis","type":"exact"},{"name":"inhibition of histidine anabolism","type":"narrow"},{"name":"inhibition of histidine biosynthesis","type":"narrow"},{"name":"inhibition of histidine biosynthetic process","type":"narrow"},{"name":"inhibition of histidine formation","type":"narrow"},{"name":"inhibition of histidine synthesis","type":"narrow"},{"name":"negative regulation of histidine anabolism","type":"exact"},{"name":"negative regulation of histidine biosynthesis","type":"exact"},{"name":"negative regulation of histidine formation","type":"exact"},{"name":"negative regulation of histidine synthesis","type":"exact"}],"termid":"GO:0120214"}


id: PBO:0089136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI inositol deacylase Bst1","termid":"PBO:0089136"}


id: PBO:0052583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine rich nucleolar protein 1 pseudogene 1","termid":"PBO:0052583"}


id: MONDO:0000583
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"B cell deficiency","termid":"MONDO:0002211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"immunoglobulin beta deficiency","secondary_identifiers":["UMLS:C3502055","MESH:C567200","MEDGEN:502457","DOID:0060026"],"synonyms":[{"name":"IgB deficiency","type":"related"}],"termid":"MONDO:0000583","xrefs":{"Monarch":{"xref_id":"0000583"}}}


id: MONDO:0005351
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder most often seen in adolescent females characterized by a refusal to maintain a minimally normal body weight, an intense fear of gaining weight, a disturbance in body image, and, in postmenarcheal females, the development of amenorrhea.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eating disorder","termid":"MONDO:0005451"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anorexia nervosa","secondary_identifiers":["NCIT:C34387","icd11.foundation:263852475","ICD9:307.1","SCTID:56882008","UMLS:C0003125","MESH:D000856","DOID:8689","MEDGEN:316","ICD10CM:F50.0","Orphanet:36297"],"termid":"MONDO:0005351","xrefs":{"Monarch":{"xref_id":"0005351"}}}


id: PBO:0084050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein for Gpa1p; regulates desensitization to alpha factor pheromone; also required to prevent receptor-independent signaling of the mating pathway; member of the RGS (regulator of G-protein signaling) family","termid":"PBO:0084050"}


id: GO:0035552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Removal of the methyl group from one or more nucleotides within a single-stranded DNA molecule involving the oxidation (i.e. electron loss) of one or more atoms.","definition_xrefs":["PMID:18775698","GOC:BHF","GOC:rl"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidative single-stranded DNA demethylation (obsolete GO:0035552)","synonyms":[{"name":"oxidative ssDNA demethylation","type":"exact"}],"termid":"GO:0035552"}


id: PBO:0060277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin heavy chain 10","termid":"PBO:0060277"}


id: PBO:0045414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA4 pseudogene 3","termid":"PBO:0045414"}


id: PBO:0030099
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_ornithine_level","termid":"PBO:0030099"}


id: MONDO:1012339
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"reduced glutathione deficiency, non-human animal","termid":"MONDO:1011699"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reduced glutathione deficiency, sheep","secondary_identifiers":["OMIA:001235-9940"],"termid":"MONDO:1012339","xrefs":{"Monarch":{"xref_id":"1012339"}}}


id: FYPO:0007000
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone exchange occurs to a normal (i.e. indistinguishable from wild type) extent at transposable elements. Histone exchange is replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.","definition_xrefs":["PMID:26518661","GO:0005721","PomBase:mah","GO:0043486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal dynamic protein localization pattern","termid":"FYPO:0006999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal histone exchange at transposable element","synonyms":[{"name":"normal histone exchange at transposable element during mitotic cell cycle","type":"related"},{"name":"normal histone exchange at transposable element during vegetative growth","type":"exact"},{"name":"normal histone exchange at transposon","type":"exact"}],"termid":"FYPO:0007000"}


id: GO:0015024
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of the 2-sulfate groups of the 2-O-sulfo-D-glucuronate residues of chondroitin sulfate, heparin and heparitin sulfate.","definition_xrefs":["EC:3.1.6.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfuric ester hydrolase activity","termid":"GO:0008484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"glucuronate-2-sulfatase activity","secondary_identifiers":["MetaCyc:3.1.6.18-RXN"],"synonyms":[{"name":"chondro-2-sulfatase activity","type":"related"},{"name":"glucuronate-2-sulphatase activity","type":"exact"},{"name":"glucurono-2-sulfatase activity","type":"related"},{"name":"polysaccharide-2-O-sulfo-D-glucuronate 2-sulfohydrolase activity","type":"related"}],"termid":"GO:0015024"}


id: GO:0018535
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: nicotine + acceptor + H2O = (S)-6-hydroxynicotine + reduced acceptor.","definition_xrefs":["EC:1.5.99.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors","termid":"GO:0016645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"nicotine dehydrogenase activity","secondary_identifiers":["MetaCyc:NICOTINE-DEHYDROGENASE-RXN","RHEA:14769","UM-BBD_enzymeID:r0979","UM-BBD_enzymeID:r0978"],"synonyms":[{"name":"D-nicotine oxidase activity","type":"related"},{"name":"nicotine oxidase activity","type":"related"},{"name":"nicotine:(acceptor) 6-oxidoreductase (hydroxylating)","type":"related"},{"name":"nicotine:acceptor 6-oxidoreductase (hydroxylating)","type":"related"}],"termid":"GO:0018535"}


id: MONDO:0019780
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital malformation of the external ear and the most extreme form of microtia characterized by the complete absence of the external ear and auditory canal, conductive hearing loss, attention deficit disorders and delayed language development.","definition_xrefs":["Orphanet:93976"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"},{"relation_name":"is_a","term_name":"otorhinolaryngologic disease","termid":"MONDO:0024623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anotia","secondary_identifiers":["ICD9:744.01","MedDRA:10002654","MEDGEN:152377","UMLS:C0702139","icd11.foundation:2056675356","GARD:16835","SCTID:57436000"],"termid":"MONDO:0019780","xrefs":{"Monarch":{"xref_id":"0019780"}}}


id: PBO:0089612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium transport factor","termid":"PBO:0089612"}


id: PBO:0045279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 30","termid":"PBO:0045279"}


id: PBO:0041647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium voltage-gated channel auxiliary subunit alpha2delta 2","termid":"PBO:0041647"}


id: MONDO:0010417
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Najm type X-linked intellectual deficit is a rare cerebellar dysgenesis syndrome characterized by variable clinical manifestations ranging from mild intellectual deficit with or without congenital nystagmus, to severe cognitive impairment associated with cerebellar and pontine hypoplasia/atrophy and abnormalities of cortical development.","definition_xrefs":["Orphanet:163937"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system malformation","termid":"MONDO:0020022"},{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"}],"interesting_parent_ids":["MONDO:0020022"],"is_obsolete":false,"name":"syndromic X-linked intellectual disability Najm type","secondary_identifiers":["OMIM:300749","GARD:12669","DOID:0060807","MEDGEN:437070","MESH:C567466","UMLS:C2677903"],"synonyms":[{"name":"MICPCH","type":"exact"},{"name":"Micpch syndrome","type":"related"},{"name":"X-linked intellectual disability - microcephaly - pontocerebellar hypoplasia","type":"related"},{"name":"X-linked intellectual disability, Najm type","type":"related"},{"name":"X-linked intellectual disability-microcephaly-pontocerebellar hypoplasia syndrome","type":"exact"},{"name":"intellectual developmental disorder and microcephaly with pontine and cerebellar hypoplasia, X-linked dominant","type":"exact"},{"name":"intellectual disability and microcephaly with PONTINE and cerebellar hypoplasia","type":"related"},{"name":"intellectual disability and microcephaly with pontine and cerebellar hypoplasia","type":"exact"},{"name":"intellectual disability, X-linked, syndromic, Najm type","type":"related"},{"name":"mental retardation and microcephaly with PONTINE and cerebellar hypoplasia","type":"related"},{"name":"mental retardation and microcephaly with pontine and cerebellar hypoplasia","type":"exact"},{"name":"mental retardation, X-linked, syndromic, Najm type","type":"related"},{"name":"microcephaly with pontine and cerebellar hypoplasia","type":"related"},{"name":"syndromic X-linked intellectual disability Najm type","type":"exact"}],"termid":"MONDO:0010417","xrefs":{"Monarch":{"xref_id":"0010417"}}}


id: MONDO:0010973
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the GSDME gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0019497"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 5","secondary_identifiers":["DOID:0110575","MESH:C563410","OMIM:600994","MEDGEN:331398","UMLS:C1832932","GARD:18102"],"synonyms":[{"name":"DFNA5","type":"narrow"},{"name":"GSDME autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"autosomal dominant deafness 5","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 5","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in GSDME","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 5","type":"narrow"},{"name":"deafness, autosomal dominant 5","type":"narrow"},{"name":"deafness, autosomal dominant type 5","type":"narrow"}],"termid":"MONDO:0010973","xrefs":{"Monarch":{"xref_id":"0010973"}}}


id: PBO:0030738
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-enlarged_nucleus_during_nitrogen_starvation","termid":"PBO:0030738"}


id: MOD:00287
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to a (2S,3R,4S)-3,4-dihydroxyproline.","definition_xrefs":["PubMed:12686488","Unimod:425#P","RESID:AA0282","DeltaMass:0","ChEBI:141803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dihydroxylated proline","termid":"MOD:00866"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2S,3R,4S)-3,4-dihydroxyproline","synonyms":[{"name":"(2S,3R,4S)-3,4-dihydroxyproline","type":"exact"},{"name":"(2S,3R,4S)-3,4-dihydroxypyrrolidine-2-carboxylic acid","type":"exact"},{"name":"2,3-trans-3,4-cis-3,4-dihydroxy-L-proline","type":"exact"},{"name":"2-alpha-3-beta-4-beta-3,4-dihydroxyproline","type":"exact"},{"name":"3,4-Dihydroxylation (of Proline)","type":"exact"},{"name":"3,4-dihydroxylated L-proline","type":"exact"},{"name":"34Hy2Pro","type":"exact"},{"name":"Dioxidation","type":"related"},{"name":"MOD_RES (3R,4S)-3,4-dihydroxyproline","type":"exact"},{"name":"dihydroxy","type":"related"},{"name":"trans-2,3-cis-3,4-dihydroxy-L-proline","type":"exact"}],"termid":"MOD:00287"}


id: PBO:0061100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroligin 4 X-linked","termid":"PBO:0061100"}


id: MONDO:0019348
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Ehlers-Danlos syndrome (EDS) with periventricular heterotopia is a newly described variant of EDS. Affected patients exhibit features consistent with EDS, including joint hypermobility, skin fragility and aortic dilatation. They also have periventricular heterotopia (PH), which is characterized by focal epilepsy usually beginning in the second decade of life. Intelligence is generally normal. Some patients also have cardiac anomalies such as patent ductus arteriosus, bicuspid aortic valves, or aneurismal dilatation of the sinus of Valsalva.","definition_xrefs":["Orphanet:82004"],"gene_count":0,"genotype_count":0,"name":"obsolete Ehlers-Danlos syndrome with periventricular heterotopia (obsolete MONDO:0019348)","secondary_identifiers":["OMIM:300537","SCTID:720857006"],"synonyms":[{"name":"EDS with periventricular heterotopia","type":"exact"}],"termid":"MONDO:0019348","xrefs":{"Monarch":{"xref_id":"0019348"}}}


id: PBO:0034460
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-short,_thin_stable_microtubule_bundle","termid":"PBO:0034460"}


id: PR:Q9P377
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bgs3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1,3-beta-glucan synthase component bgs3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19B12.03","synonyms":[{"name":"1,3-beta-D-glucan-UDP glucosyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-bgs3","type":"exact"}],"termid":"PR:Q9P377"}


id: MONDO:0045072
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Abnormal secretion of hormones in conjunction with neoplastic growth occurring anywhere in the body.","definition_xrefs":["NCIT:C4065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplastic syndrome","termid":"MONDO:0021058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectopic hormone secretion syndrome associated with neoplasia","secondary_identifiers":["UMLS:C0851689","MEDGEN:208863"],"synonyms":[{"name":"ectopic hormone secretion syndrome associated with neoplasia","type":"exact"},{"name":"neoplasm associated ectopic hormone secretion syndrome","type":"exact"}],"termid":"MONDO:0045072","xrefs":{"Monarch":{"xref_id":"0045072"}}}


id: PBO:0073525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing 19","termid":"PBO:0073525"}


id: PR:P0CT82
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl4102 gene.","definition_xrefs":["UniProtKB:P0CT82","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L41-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3F10.18c","synonyms":[{"name":"Spom972h-rpl4102","type":"exact"}],"termid":"PR:P0CT82"}


id: GO:0140906
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: R-CH + a halogen + oxygen donor = R-C-halogen +H2O.","definition_xrefs":["PMID:28466644","PMID:34368824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"halogenase activity","termid":"GO:0140906"}


id: PBO:0068881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 121, pseudogene","termid":"PBO:0068881"}


id: PBO:0051788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQCF5 antisense RNA 1","termid":"PBO:0051788"}


id: MONDO:0007512
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectodermal dysplasia syndrome with distinctive facial appearance and preaxial polydactyly of feet","secondary_identifiers":["MESH:C565067","OMIM:129540","UMLS:C1851851","MEDGEN:342107"],"synonyms":[{"name":"ectodermal dysplasia syndrome with distinctive facial appearance and preaxial polydactyly of feet","type":"exact"}],"termid":"MONDO:0007512","xrefs":{"Monarch":{"xref_id":"0007512"}}}


id: GO:0072470
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that occurs in response to signals generated as a result of cell size control checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to mitotic cell cycle checkpoint signaling","termid":"GO:0072414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cell size control checkpoint signaling","synonyms":[{"name":"cell size control checkpoint effector process","type":"exact"},{"name":"response to mitotic cell cycle cell size control checkpoint signaling","type":"exact"},{"name":"response to signal involved in cell size control checkpoint","type":"exact"}],"termid":"GO:0072470"}


id: PBO:0053386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 313","termid":"PBO:0053386"}


id: PATO:0001447
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311).","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcified","synonyms":[{"name":"calcareous","type":"exact"},{"name":"calcification","type":"narrow"}],"termid":"PATO:0001447"}


id: PBO:0078247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 24/OR9-2 (pseudogene)","termid":"PBO:0078247"}


id: GO:0033715
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: inosine + O2 = 9-riburonosylhypoxanthine + 2 H2O; (1a) 2 inosine + O2 = 2 5'-dehydroinosine + 2 H2O, and (1b) 2 5'-dehydroinosine + O2 = 2 9-riburonosylhypoxanthine + 2 H2O.","definition_xrefs":["RHEA:28651","EC:1.1.3.28"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor","termid":"GO:0016899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"nucleoside oxidase activity","secondary_identifiers":["MetaCyc:NUCLEOSIDE-OXIDASE-RXN"],"synonyms":[{"name":"nucleoside:oxygen 5'-oxidoreductase activity","type":"related"}],"termid":"GO:0033715"}


id: GO:0020016
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Invagination of the plasma membrane from which a cilium (also called flagellum) protrudes.","definition_xrefs":["GOC:cilia","GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ciliary pocket","synonyms":[{"name":"cilial pocket","type":"exact"},{"name":"cilium pocket","type":"exact"},{"name":"flagellar pocket","type":"exact"}],"termid":"GO:0020016"}


id: GO:0044622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of cell migration in a second organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cell migration in another organism (obsolete GO:0044622)","synonyms":[{"name":"envenomation resulting in negative regulation of cell migration in another organism","type":"narrow"},{"name":"envenomation resulting in negative regulation of cell migration in other organism","type":"narrow"},{"name":"negative regulation of cell migration in other organism","type":"exact"}],"termid":"GO:0044622"}


id: PBO:0056377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPK8IP3 antisense RNA 1","termid":"PBO:0056377"}


id: MONDO:0024663
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"malignant dermis tumor","termid":"MONDO:0003363"},{"relation_name":"is_a","term_name":"skin meningioma","termid":"MONDO:0004429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005093"],"is_obsolete":false,"name":"primary skin meningioma","secondary_identifiers":["MEDGEN:235494","NCIT:C5277","UMLS:C1335481"],"synonyms":[{"name":"primary cutaneous meningioma","type":"exact"},{"name":"primary meningioma of skin","type":"exact"},{"name":"primary meningioma of the skin","type":"exact"},{"name":"primary skin meningioma","type":"exact"}],"termid":"MONDO:0024663","xrefs":{"Monarch":{"xref_id":"0024663"}}}


id: GO:0048819
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hair follicle maturation.","definition_xrefs":["GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"hair follicle maturation","termid":"GO:0048820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hair follicle maturation","termid":"GO:0048819"}


id: MONDO:0045034
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disease characteristic","termid":"MONDO:0021125"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"infectious disease characteristic","termid":"MONDO:0045034","xrefs":{"Monarch":{"xref_id":"0045034"}}}


id: MONDO:0032703
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short stature, amelogenesis imperfecta, and skeletal dysplasia with scoliosis","secondary_identifiers":["OMIM:618363","UMLS:C5193055","MEDGEN:1676818"],"synonyms":[{"name":"SHORT STATURE, AMELOGENESIS IMPERFECTA, AND SKELETAL DYSPLASIA WITH SCOLIOSIS","type":"related"},{"name":"SSASKS","type":"related"}],"termid":"MONDO:0032703","xrefs":{"Monarch":{"xref_id":"0032703"}}}


id: PBO:0002809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rer1 family protein (predicted)","termid":"PBO:0002809"}


id: MONDO:0018077
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tularemia is an infection caused by the bacterium Francisella tularensis. It is more common in rodents and rabbits but has been found in other animals including domestic cats, sheep, birds, and hamsters. Humans can become infected in several different ways: by handling infected animals, through tick or deer fly bites, by drinking contaminated water, or by inhaling contaminated dust or aerosols. Person-to-person transmission has not been reported. The type of tularemia and the particular signs and symptoms vary depending on how the bacteria enter the body. However, fever is seen in most cases. Though tularemia can be life-threatening, most infections can be treated with antibiotics.","direct_ancestors":[{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"vector-borne disease","termid":"MONDO:0100120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tularemia","secondary_identifiers":["SCTID:19265001","UMLS:C0041351","ICD9:021.9","GARD:396","DOID:2123","EFO:1001444","ICD10CM:A21","ICD9:021.8","MEDGEN:22520","MedDRA:10045146","MESH:D014406","NCIT:C85208","NORD:1803","Orphanet:3392"],"synonyms":[{"name":"Deerfly fever","type":"related"},{"name":"Francisella tularensis caused disease or disorder","type":"exact"},{"name":"Francisella tularensis disease or disorder","type":"exact"},{"name":"Francisella tularensis infection","type":"related"},{"name":"Francisella tularensis infectious disease","type":"exact"},{"name":"Ohara disease","type":"related"},{"name":"Pahvant Valley plague","type":"related"},{"name":"Yatobyo (Japan)","type":"related"},{"name":"lemming fever","type":"related"},{"name":"rabbit fever","type":"related"}],"termid":"MONDO:0018077","xrefs":{"Monarch":{"xref_id":"0018077"}}}


id: GO:0018251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The oxidation of the C alpha-C beta bond of peptidyl-tyrosine to form peptidyl-dehydrotyrosine coupled with cyclization of neighboring residues.","definition_xrefs":["RESID:AA0183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-tyrosine modification","termid":"GO:0018212"},{"relation_name":"is_a","term_name":"protein dehydration","termid":"GO:0018249"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-tyrosine dehydrogenation","termid":"GO:0018251"}


id: MONDO:0010435
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nystagmus","termid":"MONDO:0005712"},{"relation_name":"is_a","term_name":"GPR143-related foveal hypoplasia","termid":"MONDO:0700230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"nystagmus 6, congenital, X-linked","secondary_identifiers":["DOID:0111795","OMIM:300814","UMLS:C3151752","MEDGEN:463102"],"synonyms":[{"name":"NYS6","type":"related"},{"name":"NYSTAGMUS 6, congenital, X-linked","type":"related"},{"name":"nystagmus 6, congenital, X-linked","type":"exact"},{"name":"nystagmus 6, congenital, X-linked, X-linked recessive","type":"exact"}],"termid":"MONDO:0010435","xrefs":{"Monarch":{"xref_id":"0010435"}}}


id: PBO:0065954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD21 antisense RNA 1","termid":"PBO:0065954"}


id: PR:P14965
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ura4 gene.","definition_xrefs":["UniProtKB:P14965","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orotidine 5'-phosphate decarboxylase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.05c","synonyms":[{"name":"OMP decarboxylase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"OMPDCase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"OMPdecase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ura4","type":"exact"},{"name":"UMP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"uridine 5'-monophosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P14965"}


id: GO:0102632
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-scoulerine + [reduced NADPH--hemoprotein reductase] + O2 -> (S)-nandinine + [oxidized NADPH--hemoprotein reductase] + 2 H2O.","definition_xrefs":["PMID:17250743","RHEA:50364","PMID:21094631","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(S)-nandinine synthase activity","secondary_identifiers":["MetaCyc:RXN-15538","EC:1.14.19.73"],"termid":"GO:0102632"}


id: PBO:0031636
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_gene_silencing","termid":"PBO:0031636"}


id: MONDO:0018816
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Isolated neonatal sclerosing cholangitis is a rare, genetic, biliary tract disease characterized by severe neonatal-onset cholangiopathy with patent bile ducts and absence of ichthyosiform skin lesions. Patients present with jaundice, acholic stools, hepatosplenomegaly and high serum gamma-glutamyltransferase activity. Liver histology shows portal fibrosis, ductular proliferation, hepatocellular metallothionein deposits, and intralobular bile-pigment accumulations. Some patients may also have renal disease.","definition_xrefs":["Orphanet:480556"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"sclerosing cholangitis","termid":"MONDO:0018646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"isolated neonatal sclerosing cholangitis","secondary_identifiers":["UMLS:C4479344","GARD:21983","MEDGEN:1393230","OMIM:617394"],"synonyms":[{"name":"NSC","type":"related"},{"name":"sclerosing cholangitis, neonatal","type":"related"}],"termid":"MONDO:0018816","xrefs":{"Monarch":{"xref_id":"0018816"}}}


id: PBO:0075928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST13, Hsp70 interacting protein pseudogene 20","termid":"PBO:0075928"}


id: PATO:0002479
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer.","definition_xrefs":["PATOC:DS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated","termid":"PATO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"obliquely striated","termid":"PATO:0002479"}


id: PR:O14310
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- npp106 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin npp106 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.14","synonyms":[{"name":"Spom972h-npp106","type":"exact"},{"name":"nuclear pore protein npp106 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14310"}


id: PBO:0069684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 961, pseudogene","termid":"PBO:0069684"}


id: GO:0033973
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dCTP + 2 H2O = diphosphate + dUMP + H+ + NH4.","definition_xrefs":["RHEA:19205","EC:3.5.4.30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016810","GO:0016787"],"is_obsolete":false,"name":"dCTP deaminase (dUMP-forming) activity","secondary_identifiers":["MetaCyc:3.5.4.30-RXN","KEGG_REACTION:R07307"],"synonyms":[{"name":"dCTP aminohydrolase (dUMP-forming) activity","type":"related"}],"termid":"GO:0033973"}


id: GO:0002456
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the carrying out of an immune response by a T cell.","definition_xrefs":["GOC:add","GO_REF:0000022","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte mediated immunity","termid":"GO:0002449"},{"relation_name":"is_a","term_name":"adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell mediated immunity","synonyms":[{"name":"T lymphocyte mediated immunity","type":"exact"},{"name":"T-cell mediated immunity","type":"exact"},{"name":"T-lymphocyte mediated immunity","type":"exact"},{"name":"cell-mediated immunity","type":"broad"},{"name":"cellular immune response","type":"broad"}],"termid":"GO:0002456"}


id: SO:0002123
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A constant (C) gene, a gene that codes the constant region of an immunoglobulin chain.","definition_xrefs":["IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php","GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin_gene","termid":"SO:0002122"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IG_C_gene","synonyms":[{"name":"IGC_gene","type":"exact"},{"name":"Immunoglobulin_Constant_germline_Gene","type":"exact"},{"name":"immunoglobulin_C_gene","type":"exact"}],"termid":"SO:0002123"}


id: GO:1901426
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a furfural stimulus.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to furfural","termid":"GO:1901426"}


id: MONDO:0859335
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital myopathy","termid":"MONDO:0019952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"congenital myopathy 15","secondary_identifiers":["MEDGEN:1824046","OMIM:620161","UMLS:C5774273","DOID:0081347"],"termid":"MONDO:0859335","xrefs":{"Monarch":{"xref_id":"0859335"}}}


id: GO:1900045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein K63-linked ubiquitination.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein K63-linked ubiquitination","termid":"GO:1900044"},{"relation_name":"is_a","term_name":"negative regulation of protein polyubiquitination","termid":"GO:1902915"},{"relation_name":"negatively_regulates","term_name":"protein K63-linked ubiquitination","termid":"GO:0070534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"negatively_regulates","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein K63-linked ubiquitination","synonyms":[{"name":"down regulation of protein K63-linked polyubiquitination","type":"exact"},{"name":"down regulation of protein K63-linked ubiquitination","type":"related"},{"name":"down-regulation of protein K63-linked polyubiquitination","type":"exact"},{"name":"down-regulation of protein K63-linked ubiquitination","type":"related"},{"name":"downregulation of protein K63-linked polyubiquitination","type":"exact"},{"name":"downregulation of protein K63-linked ubiquitination","type":"related"},{"name":"inhibition of protein K63-linked polyubiquitination","type":"exact"},{"name":"inhibition of protein K63-linked ubiquitination","type":"related"},{"name":"negative regulation of protein K63-linked polyubiquitination","type":"exact"}],"termid":"GO:1900045"}


id: PBO:0052928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 19-11, pseudogene","termid":"PBO:0052928"}


id: GO:0016653
data:
  {"annotated_genes":["SJAG_04270","SJAG_00972","SJAG_04397","SJAG_00235","SJAG_02794","SJAG_02395"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79708],"is_not":false,"summary":null,"term":"GO:0016653"},{"annotations":[59453,77824,77595],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004128"},{"annotations":[76976,64650],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003958"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a heme protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H","termid":"GO:0016651"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00235":null,"SJAG_00972":null,"SJAG_02395":null,"SJAG_02794":null,"SJAG_04270":null,"SJAG_04397":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000033":null},"secondary_identifiers":["EC:1.6.2.-"],"synonyms":[{"name":"oxidoreductase activity, acting on NADH or NADPH, haem protein as acceptor","type":"exact"},{"name":"oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor","type":"related"}],"termid":"GO:0016653","terms_by_termid":{"GO:0003958":null,"GO:0004128":null,"GO:0016653":null}}


id: GO:0033353
data:
  {"annotated_genes":["SJAG_03556"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77322],"is_not":false,"summary":null,"term":"GO:0033353"}]},"cv_name":"biological_process","definition":"A cyclic series of interconversions involving S-adenosylmethionine, S-adenosyl-L-homocysteine, L-cysteine, and L-methionine. Couples utilization of the methyl group of SAM with recycling of the homocysteinyl group and regeneration of methionine.","definition_xrefs":["GOC:mah","MetaCyc:PWY-5041"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine metabolic process","termid":"GO:0046500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03556":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"S-adenosylmethionine cycle","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"SAM cycle","type":"exact"},{"name":"activated methyl cycle","type":"exact"}],"termid":"GO:0033353","terms_by_termid":{"GO:0033353":null}}


id: GO:0036101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of leukotriene B4, a leukotriene composed of (6Z,8E,10E,14Z)-eicosatetraenoic acid having (5S)- and (12R)-hydroxy substituents.","definition_xrefs":["GOC:yaf","PMID:9799565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukotriene catabolic process","termid":"GO:0036100"},{"relation_name":"is_a","term_name":"leukotriene B4 metabolic process","termid":"GO:0036102"},{"relation_name":"is_a","term_name":"long-chain fatty acid catabolic process","termid":"GO:0042758"},{"relation_name":"is_a","term_name":"icosanoid catabolic process","termid":"GO:1901523"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"leukotriene B4 catabolic process","synonyms":[{"name":"LTB4 catabolism","type":"exact"},{"name":"leukotriene B4 breakdown","type":"exact"},{"name":"leukotriene B4 catabolism","type":"exact"},{"name":"leukotriene B4 degradation","type":"exact"}],"termid":"GO:0036101"}


id: MONDO:0004082
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An immature teratoma that arises from the ovary and occurs in children.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"childhood teratoma of the ovary","termid":"MONDO:0003819"},{"relation_name":"is_a","term_name":"malignant childhood germ cell neoplasm","termid":"MONDO:0004479"},{"relation_name":"is_a","term_name":"immature ovarian teratoma","termid":"MONDO:0018369"},{"relation_name":"is_a","term_name":"childhood gonadal germ cell tumor","termid":"MONDO:0020577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"childhood immature teratoma of ovary","secondary_identifiers":["MEDGEN:232353","UMLS:C1332990","DOID:7037","NCIT:C6547"],"synonyms":[{"name":"childhood immature ovarian teratoma","type":"exact"},{"name":"childhood immature teratoma of the ovary","type":"exact"},{"name":"childhood ovarian immature teratoma","type":"exact"},{"name":"immature ovarian teratoma of childhood","type":"exact"},{"name":"paediatric immature ovarian teratoma","type":"exact"},{"name":"paediatric immature teratoma of ovary","type":"exact"},{"name":"paediatric immature teratoma of the ovary","type":"exact"},{"name":"paediatric ovarian immature teratoma","type":"exact"},{"name":"pediatric immature ovarian teratoma","type":"exact"},{"name":"pediatric immature teratoma of ovary","type":"exact"},{"name":"pediatric immature teratoma of the ovary","type":"exact"},{"name":"pediatric ovarian immature teratoma","type":"exact"}],"termid":"MONDO:0004082","xrefs":{"Monarch":{"xref_id":"0004082"}}}


id: GO:0090279
data:
  {"annotated_genes":["SJAG_03631","SJAG_04551","SJAG_00296"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90981,113107],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905949"},{"annotations":[101898],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905665"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the directed movement of calcium ions into a cell or organelle.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of calcium ion transport","termid":"GO:0051924"},{"relation_name":"regulates","term_name":"calcium ion import","termid":"GO:0070509"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_03631":null,"SJAG_04551":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of calcium ion import","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of transmembrane calcium influx","type":"related"}],"termid":"GO:0090279","terms_by_termid":{"GO:1905665":null,"GO:1905949":null}}


id: GO:0019541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving propionate, the anion derived from propionic (propanoic) acid, a carboxylic acid important in the energy metabolism of ruminants.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"short-chain fatty acid metabolic process","termid":"GO:0046459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"propionate metabolic process","synonyms":[{"name":"propanoate metabolic process","type":"exact"},{"name":"propanoate metabolism","type":"exact"},{"name":"propionate metabolism","type":"exact"}],"termid":"GO:0019541"}


id: MONDO:0011942
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"systemic lupus erythematosus with nephritis, susceptibility to, 1","secondary_identifiers":["OMIM:607965","MEDGEN:335794","UMLS:C1842757"],"synonyms":[{"name":"SLEN1","type":"exact"},{"name":"systemic lupus erythematosus with nephritis, susceptibility to, 1","type":"exact"}],"termid":"MONDO:0011942","xrefs":{"Monarch":{"xref_id":"0011942"}}}


id: PBO:0052166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium inwardly rectifying channel subfamily J member 14","termid":"PBO:0052166"}


id: PBO:0088876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphopantothenate-cysteine ligase Cab2","termid":"PBO:0088876"}


id: MONDO:0017797
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Any of the forms of odontogenic neoplasm that have a rare incidence.","definition_xrefs":["MONDO:patterns/rare"],"gene_count":0,"genotype_count":0,"name":"obsolete rare odontologic tumor (obsolete MONDO:0017797)","secondary_identifiers":["Orphanet:314425"],"synonyms":[{"name":"rare odontogenic neoplasm","type":"exact"},{"name":"rare odontogenic tumor","type":"related"}],"termid":"MONDO:0017797","xrefs":{"Monarch":{"xref_id":"0017797"}}}


id: GO:0002064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an epithelial cell over time, from its formation to the mature structure. An epithelial cell is a cell usually found in a two-dimensional sheet with a free surface.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell development","termid":"GO:0048468"},{"relation_name":"part_of","term_name":"epithelial cell differentiation","termid":"GO:0030855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell development","termid":"GO:0002064"}


id: GO:0015956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a bis(5'-nucleosidyl) oligophosphate, a compound formed of two nucleosides joined together through their 5' carbons by a chain of phosphate molecules.","definition_xrefs":["GOC:mah","PMID:10970777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide metabolic process","termid":"GO:0009117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"bis(5'-nucleosidyl) oligophosphate metabolic process","synonyms":[{"name":"bis(5'-nucleosidyl) oligophosphate metabolism","type":"exact"}],"termid":"GO:0015956"}


id: PBO:0059588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTARC2 pseudogene 1","termid":"PBO:0059588"}


id: GO:0015452
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Primary active transport of a solute across a membrane driven by a methyl transfer reaction. Primary active transport is catalysis of the transport of a solute across a membrane, up the solute's concentration gradient, by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction and is driven by a primary energy source.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","TC:3.C.-.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary active transmembrane transporter activity","termid":"GO:0015399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"methyl transfer-driven active transmembrane transporter activity","secondary_identifiers":["TC:3.C"],"synonyms":[{"name":"Methyltransfer-driven transporters","type":"exact"}],"termid":"GO:0015452"}


id: FYPO:0006505
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the tip of a shmoo, or mating projection, does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization","termid":"FYPO:0001375"},{"relation_name":"is_a","term_name":"abnormal protein localization to shmoo tip","termid":"FYPO:0004802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to shmoo tip","synonyms":[{"name":"abolished protein localisation to shmoo tip","type":"exact"},{"name":"abolished protein localization to mating projection tip","type":"exact"},{"name":"protein localization to shmoo tip abolished","type":"exact"}],"termid":"FYPO:0006505"}


id: FYPO:0005631
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of protein degradation is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein degradation during vegetative growth","termid":"FYPO:0000845"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"decreased rate of protein degradation during vegetative growth","synonyms":[{"name":"decreased rate of protein breakdown during vegetative growth","type":"exact"},{"name":"decreased rate of protein catabolic process during vegetative growth","type":"exact"},{"name":"decreased rate of protein catabolism during vegetative growth","type":"exact"},{"name":"decreased rate of protein degradation during mitotic cell cycle","type":"related"},{"name":"reduced rate of protein degradation","type":"exact"}],"termid":"FYPO:0005631"}


id: GO:0090155
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).","definition_xrefs":["GOC:ascb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lipid biosynthetic process","termid":"GO:0051055"},{"relation_name":"is_a","term_name":"regulation of sphingolipid biosynthetic process","termid":"GO:0090153"},{"relation_name":"negatively_regulates","term_name":"sphingolipid biosynthetic process","termid":"GO:0030148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0006629"],"is_obsolete":false,"name":"negative regulation of sphingolipid biosynthetic process","secondary_identifiers":["GO:0090157"],"synonyms":[{"name":"negative regulation of sphingolipid biosynthesis involved in cellular sphingolipid homeostasis","type":"related"}],"termid":"GO:0090155"}


id: PBO:0084434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAL-activator protein; part of complex locus MAL3; nonfunctional in genomic reference strain S288C","termid":"PBO:0084434"}


id: PBO:0003305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiosis inducing protein Mei3","termid":"PBO:0003305"}


id: PR:Q09860
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cysteine--tRNA ligase, cytoplasmic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10890:SF3","OMA:SCHPO01825","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine--tRNA ligase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29E6.06c","secondary_identifiers":["UniProtKB:Q09860"],"synonyms":[{"name":"CysRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-CARS","type":"exact"},{"name":"cysteinyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09860"}


id: PBO:0052159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KCNJ6 antisense RNA 1","termid":"PBO:0052159"}


id: GO:0035616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A histone deubiquitination process in which a ubiquitin monomer is removed from a conserved lysine residue in the C-terminus of histone H2B. The conserved lysine residue is K119 in fission yeast, K123 in budding yeast, or K120 in mammals.","definition_xrefs":["PMID:15657442","GOC:vw","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2B conserved C-terminal lysine deubiquitination (obsolete GO:0035616)","synonyms":[{"name":"budding yeast H2B K123 deubiquitination","type":"narrow"},{"name":"fission yeast H2B K119 deubiquitination","type":"narrow"},{"name":"mammalian H2B K120 deubiquitination","type":"narrow"}],"termid":"GO:0035616"}


id: GO:0046436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-alanine, the D-enantiomer of the amino acid alanine, i.e. (2R)-2-aminopropanoic acid.","definition_xrefs":["GOC:ai","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alanine metabolic process","termid":"GO:0006522"},{"relation_name":"is_a","term_name":"D-amino acid metabolic process","termid":"GO:0046416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"D-alanine metabolic process","synonyms":[{"name":"D-alanine metabolism","type":"exact"}],"termid":"GO:0046436"}


id: PBO:0079244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 17","termid":"PBO:0079244"}


id: MONDO:0030993
data:
  {"annotated_genes":["SJAG_00336","SJAG_03542","SJAG_00303"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86594,86595,86596],"is_not":false,"summary":null,"term":"MONDO:0030993"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Tessadori-Van-Haaften neurodevelopmental syndrome","termid":"MONDO:0031400"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00303":null,"SJAG_00336":null,"SJAG_03542":null},"genotype_count":0,"is_obsolete":false,"name":"Tessadori-Van Haaften neurodevelopmental syndrome 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619950","UMLS:C5774310","MEDGEN:1824083"],"synonyms":[{"name":"TEVANED3","type":"exact"},{"name":"Tessadori-Van Haaften neurodevelopmental syndrome 3","type":"exact"}],"termid":"MONDO:0030993","terms_by_termid":{"MONDO:0030993":null},"xrefs":{"Monarch":{"xref_id":"0030993"}}}


id: PBO:0055955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 69","termid":"PBO:0055955"}


id: PBO:0077440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 175","termid":"PBO:0077440"}


id: PBO:0058386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4758","termid":"PBO:0058386"}


id: GO:0061058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the peptidoglycan recognition protein signaling pathway.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pattern recognition receptor signaling pathway","termid":"GO:0062207"},{"relation_name":"regulates","term_name":"peptidoglycan recognition protein signaling pathway","termid":"GO:0061057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of peptidoglycan recognition protein signaling pathway","synonyms":[{"name":"regulation of peptidoglycan recognition protein signalling pathway","type":"exact"}],"termid":"GO:0061058"}


id: PBO:0061665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 43","termid":"PBO:0061665"}


id: PBO:0028121
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_lateral_cortical_node","termid":"PBO:0028121"}


id: PBO:0049739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemoglobin subunit beta pseudogene 1","termid":"PBO:0049739"}


id: PBO:0000401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antisense RNA, poly(A)-bearing RNA (predicted)","termid":"PBO:0000401"}


id: PBO:0078974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon GCT) 2-1","termid":"PBO:0078974"}


id: MONDO:1010702
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pyruvate kinase deficiency of erythrocyte that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate kinase deficiency of erythrocyte, non-human animal","termid":"MONDO:1010099"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate kinase deficiency of erythrocyte, domestic cat","secondary_identifiers":["OMIA:000844-9685"],"termid":"MONDO:1010702","xrefs":{"Monarch":{"xref_id":"1010702"}}}


id: MONDO:1011909
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"urinary system disorder, non-human animal","termid":"MONDO:1011365"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"renal disease, non-human animal","secondary_identifiers":["OMIA:000856"],"termid":"MONDO:1011909","xrefs":{"Monarch":{"xref_id":"1011909"}}}


id: PBO:0024833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid synthase alpha subunit Fas2","termid":"PBO:0024833"}


id: PBO:0071167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 6","termid":"PBO:0071167"}


id: PBO:0067461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 586, pseudogene","termid":"PBO:0067461"}


id: GO:0097456
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Portion of myelin-forming Schwann cell consisting of terminal cytoplasmic extensions adhered to the axon at the beginning and end of the myelin sheath.","definition_xrefs":["NIF_Subcellular:sao924713546"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell projection","termid":"GO:0097386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"terminal loop","synonyms":[{"name":"terminal loop of Schwann cell","type":"exact"}],"termid":"GO:0097456"}


id: PBO:0091440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"esterase/lipase","termid":"PBO:0091440"}


id: PBO:0072523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 52","termid":"PBO:0072523"}


id: PBO:0036181
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein-protein_interaction_phenotype","termid":"PBO:0036181"}


id: SO:0000397
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (SO:0000394).","direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA","termid":"SO:0000274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U6atac_snRNA","synonyms":[{"name":"U6atac small nuclear RNA","type":"exact"},{"name":"U6atac snRNA","type":"exact"},{"name":"snRNA U6atac","type":"exact"}],"termid":"SO:0000397"}


id: MONDO:0012014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive intermediate Charcot-Marie-Tooth disease type A is a subtype of autosomal recessive intermediate Charcot-Marie-Tooth (CMT) disease characterized by severe, early childhood-onset CMT neuropathy with prominent pes equinovarus deformity and impairment of hand muscles. Nerve conduction velocities usually range between 25-35 m/s and both axonal and demyelinating changes are observed on peripheral nerve pathology.","definition_xrefs":["Orphanet:217055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive intermediate Charcot-Marie-Tooth disease","termid":"MONDO:0017058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0006025"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease recessive intermediate A","secondary_identifiers":["GARD:12453","OMIM:608340","MESH:C564256","DOID:0110201","MEDGEN:334012","UMLS:C1842197"],"synonyms":[{"name":"CMTRIA","type":"exact"},{"name":"Charcot-Marie-Tooth disease caused by mutation in GDAP1","type":"exact"},{"name":"Charcot-Marie-Tooth disease recessive intermediate type A","type":"exact"},{"name":"Charcot-Marie-Tooth disease, recessive Intermediate type a","type":"exact"},{"name":"Charcot-Marie-Tooth disease, recessive intermediate A","type":"related"},{"name":"Charcot-Marie-Tooth disease, recessive intermediate, A","type":"related"},{"name":"Charcot-Marie-Tooth neuropathy recessive intermediate A","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, recessive Intermediate a","type":"related"},{"name":"GDAP1 Charcot-Marie-Tooth disease","type":"exact"},{"name":"RI-CMT type A","type":"exact"},{"name":"RI-CMTA","type":"exact"},{"name":"Ri-Cmta","type":"related"},{"name":"autosomal recessive intermediate Charcot-Marie-Tooth disease type A","type":"exact"}],"termid":"MONDO:0012014","xrefs":{"Monarch":{"xref_id":"0012014"}}}


id: PBO:0005787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase Snf22","termid":"PBO:0005787"}


id: GO:0004064
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a phenyl acetate + H2O = a phenol + acetate.","definition_xrefs":["EC:3.1.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"arylesterase activity","secondary_identifiers":["MetaCyc:ARYLESTERASE-RXN","UM-BBD_reactionID:r0757","RHEA:17309"],"synonyms":[{"name":"A-esterase activity","type":"broad"},{"name":"aromatic esterase","type":"narrow"},{"name":"aryl-ester hydrolase","type":"narrow"},{"name":"paraoxonase activity","type":"broad"}],"termid":"GO:0004064"}


id: FYPO:0002046
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which cells in a population show decreased sensitivity to a stress. Typically, a cell population is deemed resistant to a stress if cells in the population grow and divide when exposed to the stress at an intensity at which wild-type cells stop growing (and may die).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell population growth","termid":"FYPO:0000045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"resistance to stress","synonyms":[{"name":"increased cell population growth during cellular response to stress","type":"exact"},{"name":"increased growth during cellular response to stress","type":"exact"},{"name":"resistant to stress","type":"exact"},{"name":"stress resistance: increased","type":"related"}],"termid":"FYPO:0002046"}


id: PBO:0073250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 3","termid":"PBO:0073250"}


id: GO:0075319
data:
  {"annotated_genes":["SJAG_03501"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117972],"is_not":false,"summary":null,"term":"GO:0075319"}]},"cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of ascus development, a saclike structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of spore-bearing organ development","termid":"GO:0075261"},{"relation_name":"is_a","term_name":"regulation of ascus development","termid":"GO:0075318"},{"relation_name":"positively_regulates","term_name":"ascus development","termid":"GO:0075317"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03501":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of ascus development","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0075319","terms_by_termid":{"GO:0075319":null}}


id: PBO:0071383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30 pseudogene 6","termid":"PBO:0071383"}


id: GO:1901892
data:
  {"annotated_genes":["SJAG_01464","SJAG_03508","SJAG_00883","SJAG_02169","SJAG_03353","SJAG_00229","SJAG_06270","SJAG_04455","SJAG_03048","SJAG_02514","SJAG_04943","SJAG_00526","SJAG_03592","SJAG_01790","SJAG_03681","SJAG_01386"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102123],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905757"},{"annotations":[90490,72574,92608,95396,107294,106854,109920,104802,92692,99352,101030,106989,91495,115646,93227],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031030"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cell septum assembly.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokinesis","termid":"GO:0032466"},{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"is_a","term_name":"regulation of cell septum assembly","termid":"GO:1901891"},{"relation_name":"negatively_regulates","term_name":"cell septum assembly","termid":"GO:0090529"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00229":null,"SJAG_00526":null,"SJAG_00883":null,"SJAG_01386":null,"SJAG_01464":null,"SJAG_01790":null,"SJAG_02169":null,"SJAG_02514":null,"SJAG_03048":null,"SJAG_03353":null,"SJAG_03508":null,"SJAG_03592":null,"SJAG_03681":null,"SJAG_04455":null,"SJAG_04943":null,"SJAG_06270":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"negative regulation of cell septum assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of cell septum assembly","type":"exact"},{"name":"down-regulation of cell septum assembly","type":"exact"},{"name":"downregulation of cell septum assembly","type":"exact"},{"name":"inhibition of cell septum assembly","type":"narrow"}],"termid":"GO:1901892","terms_by_termid":{"GO:0031030":null,"GO:1905757":null}}


id: MONDO:0000051
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete keratoderma, palmoplantar striate (obsolete MONDO:0000051)","termid":"MONDO:0000051","xrefs":{"Monarch":{"xref_id":"0000051"}}}


id: MONDO:0018328
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial hypercholesterolemia","termid":"MONDO:0005439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"homozygous familial hypercholesterolemia","secondary_identifiers":["NANDO:1200394","GARD:10416","Orphanet:391665","MEDGEN:575266","SCTID:238078005","UMLS:C0342881","NANDO:2201255","MESH:D000090542"],"synonyms":[{"name":"HoFH","type":"exact"},{"name":"homozygous familial hypercholesterolemia","type":"exact"}],"termid":"MONDO:0018328","xrefs":{"Monarch":{"xref_id":"0018328"}}}


id: MONDO:0012126
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Avascular necrosis of femoral head (ANFH) is a severely disabling disease characterized by progressive groin pain, a limping gait, leg length discrepancy, collapse of the subchondral bone, limitation of hip function and eventual degeneration of the hip joint requiring total hip arthroplasty.","definition_xrefs":["Orphanet:86820"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete type 2 collagen-related bone disorder (obsolete MONDO:0019686)","termid":"MONDO:0019686"},{"relation_name":"is_a","term_name":"primary avascular necrosis","termid":"MONDO:0018379"},{"relation_name":"is_a","term_name":"osteonecrosis of genetic origin","termid":"MONDO:0018383"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial avascular necrosis of femoral head","secondary_identifiers":["NANDO:1200373","OMIMPS:608805","NCIT:C35480","SCTID:715657008","GARD:10914","MEDGEN:909851","MESH:D005271","UMLS:C4275066","icd11.foundation:1216860745"],"synonyms":[{"name":"ANFH","type":"related"},{"name":"ANFH1","type":"related"},{"name":"aseptic Necrosis of femoral head","type":"exact"},{"name":"aseptic Necrosis of head of femur","type":"exact"},{"name":"avascular NECROSIS of femoral head, primary","type":"related"},{"name":"avascular NECROSIS of femoral head, primary, 1","type":"related"},{"name":"avascular Necrosis of femoral head, primary, 1","type":"related"},{"name":"familial avascular necrosis of the femoral head","type":"related"},{"name":"familial osteonecrosis of the femoral head","type":"exact"},{"name":"femoral head, aseptic Necrosis of","type":"related"},{"name":"femoral head, avascular Necrosis of","type":"related"},{"name":"ischaemic Necrosis of femoral head","type":"related"},{"name":"ischemic Necrosis of femoral head","type":"related"},{"name":"osteonecrosis of femoral head","type":"related"},{"name":"primary avascular necrosis of the femoral head","type":"related"}],"termid":"MONDO:0012126","xrefs":{"Monarch":{"xref_id":"0012126"}}}


id: GO:0010958
data:
  {"annotated_genes":["SJAG_03970","SJAG_00991","SJAG_05346","SJAG_02605","SJAG_03591"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905533"},{"annotations":[98637,110289,93099,91505],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905589"},{"annotations":[93100,98638,91506],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905534"},{"annotations":[93101],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905626"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of amino acid import into a cell.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amino acid transmembrane transport","termid":"GO:1903789"},{"relation_name":"regulates","term_name":"amino acid import across plasma membrane","termid":"GO:0089718"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_02605":null,"SJAG_03591":null,"SJAG_03970":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"regulation of amino acid import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of amino acid import","type":"broad"}],"termid":"GO:0010958","terms_by_termid":{"GO:1905533":null,"GO:1905534":null,"GO:1905589":null,"GO:1905626":null}}


id: PBO:0069085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 332, pseudogene","termid":"PBO:0069085"}


id: PBO:0076096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 2","termid":"PBO:0076096"}


id: MONDO:0013159
data:
  {"annotated_genes":["SJAG_01491"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86436],"is_not":false,"summary":null,"term":"MONDO:0013159"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type B","termid":"MONDO:0000172"},{"relation_name":"is_a","term_name":"myopathy caused by variation in POMT1","termid":"MONDO:0700070"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01491":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0024322","MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:613155","MEDGEN:1774807","DOID:0050588","UMLS:C5436962"],"synonyms":[{"name":"MDDGB1","type":"related"},{"name":"congenital muscular dystrophy-POMT1 related","type":"exact"},{"name":"muscular dystrophy, congenital, Pomt1-related","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B, 1","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 1","type":"related"}],"termid":"MONDO:0013159","terms_by_termid":{"MONDO:0013159":null},"xrefs":{"Monarch":{"xref_id":"0013159"}}}


id: PBO:0079263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 34","termid":"PBO:0079263"}


id: MONDO:0002273
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited metabolic disorder that involves plasma protein metabolism malfunction.","definition_xrefs":["DOID:2345"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"plasma protein metabolism disease","secondary_identifiers":["MEDGEN:840208","UMLS:C3875058","ICD9:273.8"],"termid":"MONDO:0002273","xrefs":{"Monarch":{"xref_id":"0002273"}}}


id: GO:0006330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete single-stranded DNA binding (obsolete GO:0006330)","synonyms":[{"name":"single-stranded DNA binding","type":"exact"}],"termid":"GO:0006330"}


id: GO:0110070
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A plasma membrane invagination at the site of separation of a multi-nucleate cell or syncytium into individual cells.","definition_xrefs":["GOC:ha","PMID:27226317"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane region","termid":"GO:0098590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"cellularization cleavage furrow","termid":"GO:0110070"}


id: GO:0000908
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + O2 + taurine = aminoacetaldehyde + CO2 + succinate + sulfite.","definition_xrefs":["EC:1.14.11.17","RHEA:15909"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"taurine dioxygenase activity","secondary_identifiers":["MetaCyc:RXN0-299","KEGG_REACTION:R05320"],"synonyms":[{"name":"2-aminoethanesulfonate dioxygenase activity","type":"related"},{"name":"alpha-ketoglutarate-dependent taurine dioxygenase activity","type":"related"},{"name":"taurine, 2-oxoglutarate:O2 oxidoreductase (sulfite-forming)","type":"related"}],"termid":"GO:0000908"}


id: PR:P42657
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rad25 gene.","definition_xrefs":["UniProtKB:P42657","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA damage checkpoint protein rad25 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A2.13c","synonyms":[{"name":"Spom972h-rad25","type":"exact"}],"termid":"PR:P42657"}


id: MONDO:0032665
data:
  {"annotated_genes":["SJAG_00886"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85818],"is_not":false,"summary":null,"term":"MONDO:0032665"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive non-syndromic intellectual disability","termid":"MONDO:0019502"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00886":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"intellectual developmental disorder, autosomal recessive 68","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0081229","UMLS:C4749033","MEDGEN:1648490","OMIM:618302"],"synonyms":[{"name":"INTELLECTUAL DEVELOPMENTAL DISORDER, AUTOSOMAL RECESSIVE 68","type":"related"},{"name":"MRT68","type":"related"},{"name":"Mental Retardation, Autosomal Recessive 68","type":"related"}],"termid":"MONDO:0032665","terms_by_termid":{"MONDO:0032665":null},"xrefs":{"Monarch":{"xref_id":"0032665"}}}


id: PBO:0080673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASP homolog associated with actin, golgi membranes and microtubules","termid":"PBO:0080673"}


id: PBO:0062149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily F member 28 pseudogene","termid":"PBO:0062149"}


id: GO:2000432
data:
  {"annotated_genes":["SJAG_02795","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98032],"is_not":false,"summary":null,"term":"GO:2000432"},{"annotations":[102118],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903500"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cytokinesis, actomyosin contractile ring assembly.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokinesis","termid":"GO:0032466"},{"relation_name":"is_a","term_name":"negative regulation of cytoskeleton organization","termid":"GO:0051494"},{"relation_name":"is_a","term_name":"regulation of cytokinesis, actomyosin contractile ring assembly","termid":"GO:2000431"},{"relation_name":"negatively_regulates","term_name":"actomyosin contractile ring assembly","termid":"GO:0000915"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02795":null,"SJAG_03048":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"negatively_regulates","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030036","GO:0044085","GO:0007010","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"negative regulation of cytokinesis, actomyosin contractile ring assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of contractile ring assembly","type":"exact"}],"termid":"GO:2000432","terms_by_termid":{"GO:1903500":null,"GO:2000432":null}}


id: GO:1900664
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of emodin biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone biosynthetic process","termid":"GO:0010566"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"emodin biosynthetic process","termid":"GO:1900575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"regulation of emodin biosynthetic process","synonyms":[{"name":"regulation of emodin anabolism","type":"exact"},{"name":"regulation of emodin biosynthesis","type":"exact"},{"name":"regulation of emodin formation","type":"exact"},{"name":"regulation of emodin synthesis","type":"exact"}],"termid":"GO:1900664"}


id: PBO:0071973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 1","termid":"PBO:0071973"}


id: PBO:0091797
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"yeast hsp78 and hsp104 are related to human CLBP at the C-term but have different N-terminal doamins possibly due to some rearrangement in the metazoan lineage","termid":"PBO:0091797"}


id: PBO:0074409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 12","termid":"PBO:0074409"}


id: PBO:0090839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER packaging chaperone for amino acid permeases Psh3","termid":"PBO:0090839"}


id: PBO:0051876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isochorismatase domain containing 1","termid":"PBO:0051876"}


id: PBO:0066651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras and Rab interactor like","termid":"PBO:0066651"}


id: PBO:0086060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that associates with ribosomes; null mutant exhibits translation defects, altered polyribosome profiles, and resistance to the translation inhibitor anisomcyin; protein abundance increases in response to DNA replication stress","termid":"PBO:0086060"}


id: PBO:0114081
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulator of Heat Sensitivity","termid":"PBO:0114081"}


id: MONDO:0010716
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked form of lethal multiple pterygium syndrome.","definition_xrefs":["MONDO:patterns/x_linked"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"},{"relation_name":"is_a","term_name":"lethal multiple pterygium syndrome","termid":"MONDO:0009668"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked lethal multiple pterygium syndrome","secondary_identifiers":["SCTID:763462004","UMLS:C1839440","OMIM:312150","GARD:4573","MEDGEN:374225","MESH:C564072","Orphanet:79447"],"synonyms":[{"name":"lethal multiple pterygium syndrome, X-linked","type":"exact"},{"name":"multiple pterygium syndrome X-linked","type":"related"},{"name":"multiple pterygium syndrome, X-linked","type":"related"},{"name":"pterygium syndrome multiple X-linked","type":"related"},{"name":"pterygium syndrome, multiple, X-linked","type":"related"}],"termid":"MONDO:0010716","xrefs":{"Monarch":{"xref_id":"0010716"}}}


id: PBO:0005536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE binding protein Sec1 (predicted)","termid":"PBO:0005536"}


id: FYPO:0004103
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, and shaped in the form of a sphere.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"spherical vegetative cell","termid":"FYPO:0000129"},{"relation_name":"is_a","term_name":"spherical vegetative cell","termid":"FYPO:0000129"},{"relation_name":"is_a","term_name":"viable spheroid vegetative cell","termid":"FYPO:0002380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0001320","FYPO:0000005","FYPO:0001985"],"is_obsolete":false,"name":"viable spherical vegetative cell","synonyms":[{"name":"spherical viable cell","type":"exact"},{"name":"viable spherical cell","type":"exact"},{"name":"viable spherical cell during vegetative growth","type":"exact"},{"name":"viable spherical vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004103"}


id: GO:0015503
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(in) + H+(out) = K+(out) + H+(in), where glutathione maintains the closed state.","definition_xrefs":["TC:2.A.37.1.1","TC:2.A.37.1.2","PMID:11053405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:potassium antiporter activity","termid":"GO:0022821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"glutathione-regulated potassium exporter activity","termid":"GO:0015503"}


id: SO:0001523
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute of a duplication, which is an insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome.","direct_ancestors":[{"relation_name":"is_a","term_name":"alteration_attribute","termid":"SO:0001508"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"duplication_attribute","synonyms":[{"name":"duplication attribute","type":"related"}],"termid":"SO:0001523"}


id: SO:0002225
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A conserved sequence (5'-CGNMGATCNTY-3') transcription repressor binding site required for gene repression in the presence of high zinc.","direct_ancestors":[{"relation_name":"is_a","term_name":"zinc_repressed_element","termid":"SO:0002006"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LOZ1_response_element","synonyms":[{"name":"LRE","type":"related"},{"name":"LRE element","type":"related"},{"name":"Loz1 response element","type":"related"}],"termid":"SO:0002225"}


id: MONDO:0006211
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A poorly circumscribed neoplasm arising from the soft tissues in infants. It is characterized by the presence of bland fibroblastic spindle cells, collagenous stroma formation, primitive mesenchymal round cells, and mature fat cells. These components combined form a distinct organoid pattern.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal hamartoma","termid":"MONDO:0024478"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrous hamartoma of infancy","secondary_identifiers":["icd11.foundation:1496992098","MEDGEN:120562","UMLS:C0265979","SCTID:56364004","NCIT:C3942","ICD9:215.9","EFO:1000257"],"synonyms":[{"name":"fibrous hamartoma","type":"exact"},{"name":"fibrous hamartoma of infancy","type":"exact"},{"name":"infantile fibrous hamartoma","type":"exact"}],"termid":"MONDO:0006211","xrefs":{"Monarch":{"xref_id":"0006211"}}}


id: GO:0061287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a mesonephric capsule from unspecified parts. The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal capsule formation","termid":"GO:0072129"},{"relation_name":"part_of","term_name":"mesonephric capsule morphogenesis","termid":"GO:0061286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric capsule formation","termid":"GO:0061287"}


id: PBO:0060451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetylglucosamine kinase","termid":"PBO:0060451"}


id: GO:0033776
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + NADPH + O2 + phenylacetone = benzyl acetate + H2O + NADP+.","definition_xrefs":["EC:1.14.13.92","RHEA:10124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"phenylacetone monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R07201","MetaCyc:1.14.13.92-RXN"],"synonyms":[{"name":"PAMO","type":"related"},{"name":"phenylacetone,NADPH:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0033776"}


id: FYPO:0009034
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of ethylenediaminetetraacetic acid than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002682"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0002682","FYPO:0000003"],"is_obsolete":false,"name":"resistance to ethylenediaminetetraacetic acid","synonyms":[{"name":"resistance to ethylenediaminetetraacetic acid during mitotic cell cycle","type":"related"},{"name":"resistance to ethylenediaminetetraacetic acid during vegetative growth","type":"exact"},{"name":"resistant to ethylenediaminetetraacetic acid","type":"exact"}],"termid":"FYPO:0009034"}


id: PBO:0080571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WDFY family member 4","termid":"PBO:0080571"}


id: GO:1990857
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. An anaphase promoting complex bound to an activator in the Fzr1 (human)/Mfr1 (pombe) family.","definition_xrefs":["PMID:11493649"],"gene_count":0,"genotype_count":0,"name":"obsolete APC-Fzr1/Mfr1 complex (obsolete GO:1990857)","termid":"GO:1990857"}


id: PBO:0077747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOG array regulator of axonemal microtubules 2","termid":"PBO:0077747"}


id: GO:0042807
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane-enclosed sac that takes up most of the volume of a mature plant cell. Functions include storage, separation of toxic byproducts, and cell growth determination.","definition_xrefs":["Wikipedia:Vacuole","ISBN:9780815341116"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant-type vacuole","termid":"GO:0000325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0005575","GO:0005773","GO:0005737"],"is_obsolete":false,"name":"central vacuole","termid":"GO:0042807"}


id: PBO:0033802
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_double-strand_break_repair_via_homologous_recombination","termid":"PBO:0033802"}


id: MONDO:0042976
data:
  {"annotated_genes":["SJAG_04042","SJAG_04459","SJAG_01199","SJAG_04425"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85021,85020],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009354"},{"annotations":[85631],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009609"},{"annotations":[86451],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010184"}]},"cv_name":"mondo","definition":"A condition due to deficiency in any member of the vitamin B complex. These B vitamins are water-soluble and must be obtained from the diet because they are easily lost in the urine. Unlike the lipid-soluble vitamins, they cannot be stored in the body fat.","definition_xrefs":["MESH:D014804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin deficiency disorder","termid":"MONDO:0024298"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01199":null,"SJAG_04042":null,"SJAG_04425":null,"SJAG_04459":null},"genotype_count":0,"is_obsolete":false,"name":"vitamin B deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:47903000","UMLS:C0042850","NCIT:C35129","MEDGEN:22669"],"synonyms":[{"name":"deficiencies, vitamin B","type":"related"},{"name":"deficiency, vitamin B","type":"related"},{"name":"vitamin B deficiencies","type":"related"}],"termid":"MONDO:0042976","terms_by_termid":{"MONDO:0009354":null,"MONDO:0009609":null,"MONDO:0010184":null},"xrefs":{"Monarch":{"xref_id":"0042976"}}}


id: PBO:0085845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; null mutation suppresses cdc13-1 temperature sensitivity","termid":"PBO:0085845"}


id: GO:0043494
data:
  {"annotated_genes":["SJAG_00756","SJAG_03680","SJAG_02119","SJAG_01540","SJAG_04574","SJAG_00341"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[94105,96478,110229,113723,117432,118548],"is_not":false,"summary":null,"term":"GO:0043494"}]},"cv_name":"cellular_component","definition":"An cullin-dependent E3 ubiquitin ligase/histone H3-K9 methyltransferase complex essential for heterochromatin assembly by RNAi.","definition_xrefs":["GOC:vw","PMID:20211136","PMID:16127433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear ubiquitin ligase complex","termid":"GO:0000152"},{"relation_name":"is_a","term_name":"histone methyltransferase complex","termid":"GO:0035097"},{"relation_name":"is_a","term_name":"Cul4-RING E3 ubiquitin ligase complex","termid":"GO:0080008"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00341":null,"SJAG_00756":null,"SJAG_01540":null,"SJAG_02119":null,"SJAG_03680":null,"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005654","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"CLRC complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"CLRC ubiquitin ligase complex","type":"exact"},{"name":"Clr4-Rik1-Cul4 complex","type":"exact"},{"name":"Rik1 E3 ubiquitin ligase complex","type":"exact"},{"name":"Rik1-E3 ubiquitin ligase complex","type":"exact"}],"termid":"GO:0043494","terms_by_termid":{"GO:0043494":null}}


id: GO:0072765
data:
  {"annotated_genes":["SJAG_00794","SJAG_05196","SJAG_02299","SJAG_02761","SJAG_02624","SJAG_00727","SJAG_04076","SJAG_01745","SJAG_03683","SJAG_03540","SJAG_01613","SJAG_02737","SJAG_02814","SJAG_03126","SJAG_01805"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111704],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098653"},{"annotations":[116683,89351,109714,91105,102569],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072766"},{"annotations":[118403,93560,115667,100139,108894,117888,95069,102187,98983],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990571"}]},"cv_name":"biological_process","definition":"A cellular localization process in which a centromere/kinetochore is transported to, or maintained in, a specific location.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"},{"relation_name":"is_a","term_name":"organelle localization","termid":"GO:0051640"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00727":null,"SJAG_00794":null,"SJAG_01613":null,"SJAG_01745":null,"SJAG_01805":null,"SJAG_02299":null,"SJAG_02624":null,"SJAG_02737":null,"SJAG_02761":null,"SJAG_02814":null,"SJAG_03126":null,"SJAG_03540":null,"SJAG_03683":null,"SJAG_04076":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"centromere localization","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"establishment and maintenance of kinetochore localization","type":"exact"},{"name":"kinetochore localisation","type":"exact"},{"name":"kinetochore localization","type":"exact"}],"termid":"GO:0072765","terms_by_termid":{"GO:0072766":null,"GO:0098653":null,"GO:1990571":null}}


id: PR:Q9Y7I1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1B3.20 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7I1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1B3.20 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B3.20","synonyms":[{"name":"Spom972h-SPAC1B3.20","type":"exact"}],"termid":"PR:Q9Y7I1"}


id: PBO:0080323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 87 pseudogene","termid":"PBO:0080323"}


id: MONDO:1011199
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary chondrodysplasia in cattle associated with a variation in the FGFR3 gene.","definition_xrefs":["PMID:32239744"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia, non-human animal","termid":"MONDO:1010306"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondrodysplasia FGFR3-related, cattle","secondary_identifiers":["OMIA:001703-9913"],"termid":"MONDO:1011199","xrefs":{"Monarch":{"xref_id":"1011199"}}}


id: GO:0001953
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate or extent of cell adhesion to the extracellular matrix.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-matrix adhesion","termid":"GO:0001952"},{"relation_name":"is_a","term_name":"negative regulation of cell-substrate adhesion","termid":"GO:0010812"},{"relation_name":"negatively_regulates","term_name":"cell-matrix adhesion","termid":"GO:0007160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell-matrix adhesion","synonyms":[{"name":"down regulation of cell-matrix adhesion","type":"exact"},{"name":"down-regulation of cell-matrix adhesion","type":"exact"},{"name":"downregulation of cell-matrix adhesion","type":"exact"},{"name":"inhibition of cell-matrix adhesion","type":"narrow"}],"termid":"GO:0001953"}


id: GO:0008684
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxy-2-oxopentanoate = 2-oxopent-4-enoate + H2O.","definition_xrefs":["EC:4.2.1.80"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"2-oxopent-4-enoate hydratase activity","secondary_identifiers":["RHEA:22580","UM-BBD_enzymeID:r0101","GO:0018821","MetaCyc:2-OXOPENT-4-ENOATE-HYDRATASE-RXN"],"synonyms":[{"name":"2-keto-4-pentenoate (vinylpyruvate)hydratase activity","type":"related"},{"name":"2-keto-4-pentenoate hydratase activity","type":"related"},{"name":"4-hydroxy-2-oxopentanoate hydro-lyase (2-oxopent-4-enoate-forming)","type":"related"},{"name":"4-hydroxy-2-oxopentanoate hydro-lyase activity","type":"related"},{"name":"OEH activity","type":"related"}],"termid":"GO:0008684"}


id: PBO:0053757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 999","termid":"PBO:0053757"}


id: MONDO:0017222
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The classic form of Pelizaeus-Merzbacher disease (PMD) is the infantile form of PMD.","definition_xrefs":["Orphanet:280219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Pelizeaus-Merzbacher spectrum disorder","termid":"MONDO:0010714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"Pelizaeus-Merzbacher disease, classic form","secondary_identifiers":["icd11.foundation:1613420896","MEDGEN:155959","GARD:21073","SCTID:87607002","UMLS:C0751916"],"synonyms":[{"name":"classic PMD","type":"exact"}],"termid":"MONDO:0017222","xrefs":{"Monarch":{"xref_id":"0017222"}}}


id: PBO:0088592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-binding protein-associated transcription initiation factor Mot1","termid":"PBO:0088592"}


id: PBO:0090353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxamine/pyridoxine/pyridoxal transmembrane transporter","termid":"PBO:0090353"}


id: FYPO:0000507
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear export does not occur. Nuclear export is the directed movement of any substance out of the nucleus; export of all substances or a specific substance may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear export","termid":"FYPO:0000506"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abolished nuclear export","synonyms":[{"name":"abolished nuclear export during mitotic cell cycle","type":"related"},{"name":"absent nuclear export","type":"exact"},{"name":"nuclear export abolished","type":"exact"},{"name":"nuclear export abolished during vegetative growth","type":"exact"},{"name":"nuclear export: absent","type":"related"}],"termid":"FYPO:0000507"}


id: MONDO:0100373
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute myeloid leukemia that has the chromosomal anomaly inv(16)(p13.1;q22). (A chromosomal inversion that involves chromosome 16. It is associated with the development of acute myeloid leukemia CBFB-MYH11, acute myelomonocytic leukemia with abnormal eosinophils, and granulocytic sarcoma.)","definition_xrefs":["NCIT:C36373"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004992","MONDO:0005046"],"is_obsolete":false,"name":"acute myeloid leukemia, inv(16)(p13.1;q22)","secondary_identifiers":["NCIT:C9018"],"synonyms":[{"name":"AML, inv(16)(p13.1;q22)","type":"exact"},{"name":"AML, inv(16)(p13.1;q22.1)","type":"exact"},{"name":"AML, inv(16)(p13.1q22)","type":"exact"},{"name":"AML, inv(16)(p13.1q22.1)","type":"exact"},{"name":"AML, inv(16)(p13;q22)","type":"exact"},{"name":"AML, inv(16)(p13q22)","type":"exact"}],"termid":"MONDO:0100373","xrefs":{"Monarch":{"xref_id":"0100373"}}}


id: PBO:0058341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4714","termid":"PBO:0058341"}


id: PBO:0040840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLCAP apoptosis inducing factor","termid":"PBO:0040840"}


id: PBO:0025487
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginase deficiency","termid":"PBO:0025487"}


id: PBO:0031324
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_hygromycin_B","termid":"PBO:0031324"}


id: SO:0001158
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and +1 relative to the TSS. Consensus sequence is AWCAGCTGWT. Tends to co-occur with DMv2 (SO:0001161). Tends to not occur with DPE motif (SO:0000015).","definition_xrefs":["PMID:12537576:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E_box_motif","synonyms":[{"name":"AWCAGCTGWT","type":"narrow"},{"name":"E box motif","type":"exact"},{"name":"NDM5","type":"related"},{"name":"generic E box motif","type":"exact"}],"termid":"SO:0001158"}


id: MONDO:0003863
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare variant of malignant peripheral nerve sheath tumor. It is characterized by the presence of malignant cells that contain melanin.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant peripheral nerve sheath tumor","termid":"MONDO:0017827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant melanocytic neoplasm of the peripheral nerve sheath","secondary_identifiers":["NCIT:C4748","SCTID:404039004","ICD9:171.9","UMLS:C0474847","MEDGEN:99184","DOID:6345"],"synonyms":[{"name":"malignant melanocytic neoplasm of peripheral nerve sheath","type":"exact"},{"name":"malignant melanocytic neoplasm of the peripheral nerve sheath","type":"exact"},{"name":"malignant melanocytic peripheral nerve sheath tumor","type":"exact"},{"name":"malignant melanocytic peripheral nerve sheath tumour","type":"exact"},{"name":"malignant melanotic peripheral nerve sheath tumor","type":"exact"},{"name":"malignant melanotic peripheral nerve sheath tumour","type":"exact"},{"name":"melanocytic MPNST","type":"exact"},{"name":"melanotic malignant nerve sheath tumor","type":"exact"},{"name":"melanotic malignant nerve sheath tumour","type":"exact"},{"name":"melanotic malignant peripheral nerve sheath tumor","type":"exact"},{"name":"melanotic malignant peripheral nerve sheath tumor (morphologic abnormality)","type":"exact"},{"name":"melanotic malignant peripheral nerve sheath tumour","type":"exact"},{"name":"melanotic malignant peripheral nerve sheath tumour (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0003863","xrefs":{"Monarch":{"xref_id":"0003863"}}}


id: PBO:0071512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 15","termid":"PBO:0071512"}


id: PBO:0086874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative subunit of the 90S preribosome processome complex; overexpression rescues supressor mutant of mcm10; null mutant is viable; relocalizes from nucleus to cytoplasm upon DNA replication stress","termid":"PBO:0086874"}


id: PBO:0066929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 231","termid":"PBO:0066929"}


id: GO:0102138
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: O2 + reduced [NADPH--hemoprotein reductase] + typhasterol = 7-oxatyphasterol + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 7-oxatyphasterol synthase activity (obsolete GO:0102138)","termid":"GO:0102138"}


id: GO:0002949
data:
  {"annotated_genes":["SJAG_06560","SJAG_04182","SJAG_04201","SJAG_00378","SJAG_04700","SJAG_02863","SJAG_00865"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58901,78585,98038,99220,100893],"is_not":false,"summary":null,"term":"GO:0002949"},{"annotations":[118358,75344],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072670"}]},"cv_name":"biological_process","definition":"The attachment of a carbonyl group and a threonine to the amino group of the adenine residue immediately 3' of the anticodon, in tRNAs that decode ANN codons (where N is any base).","definition_xrefs":["PMID:23258706","PMID:19287007","GOC:imk","GOC:mah","PMID:21183954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"},{"relation_name":"is_a","term_name":"tRNA threonylcarbamoyladenosine metabolic process","termid":"GO:0070525"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00378":null,"SJAG_00865":null,"SJAG_02863":null,"SJAG_04182":null,"SJAG_04201":null,"SJAG_04700":null,"SJAG_06560":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0006399","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"tRNA threonylcarbamoyladenosine modification","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0070526"],"synonyms":[{"name":"t6A biosynthesis","type":"exact"},{"name":"t6A biosynthetic process","type":"exact"},{"name":"t6A tRNA modification","type":"exact"},{"name":"threonylcarbamoyladenosine anabolism","type":"exact"},{"name":"threonylcarbamoyladenosine biosynthesis","type":"exact"},{"name":"threonylcarbamoyladenosine biosynthetic process","type":"exact"},{"name":"threonylcarbamoyladenosine formation","type":"exact"},{"name":"threonylcarbamoyladenosine synthesis","type":"exact"}],"termid":"GO:0002949","terms_by_termid":{"GO:0002949":null,"GO:0072670":null}}


id: PBO:0064747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 83","termid":"PBO:0064747"}


id: MONDO:1010751
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Epidermolysis bullosa that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa, non-human animal","termid":"MONDO:1010129"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epidermolysis bullosa, cattle","secondary_identifiers":["OMIA:000340-9913"],"termid":"MONDO:1010751","xrefs":{"Monarch":{"xref_id":"1010751"}}}


id: PR:Q9UTJ7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01567","PANTHER:PTHR11632:SF5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1556.02c","secondary_identifiers":["UniProtKB:Q9UTJ7"],"synonyms":[{"name":"FP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SDHA","type":"exact"},{"name":"flavoprotein subunit of complex II (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTJ7"}


id: PBO:0043843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CPVL antisense RNA 1","termid":"PBO:0043843"}


id: PBO:0039021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartylglucosaminidase","termid":"PBO:0039021"}


id: PBO:0045526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DTWD1 pseudogene 2","termid":"PBO:0045526"}


id: PBO:0042094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 166","termid":"PBO:0042094"}


id: PBO:0080909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta","termid":"PBO:0080909"}


id: GO:0071700
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the olfactory placode to attain its fully functional state. The olfactory placode is a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"olfactory placode development","termid":"GO:0071698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olfactory placode maturation","termid":"GO:0071700"}


id: PBO:0039015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AFG3L2 pseudogene 1","termid":"PBO:0039015"}


id: _global:results_in_formation_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"The relationship linking a entity and its participation in a process whereby at the beginning of the process the entity does not exist and at the end of the process the entity exists.","definition_xrefs":["GOC:mtg_berkeley_2013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"has_output","termid":"RO:0002234"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"has_output","termid":"_global:has_output"},{"relation_name":"is_a","term_name":"results_in_developmental_progression_of","termid":"_global:results_in_developmental_progression_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_formation_of","secondary_identifiers":["GOREL:0001020","RO:0002297"],"termid":"_global:results_in_formation_of"}


id: PBO:0109390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 19","termid":"PBO:0109390"}


id: PBO:0059726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 34","termid":"PBO:0059726"}


id: PBO:0109188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi alpha-1,2-mannosyltransferase Omh6","termid":"PBO:0109188"}


id: PBO:0031286
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_chromatin_silencing","termid":"PBO:0031286"}


id: PBO:0055648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3088","termid":"PBO:0055648"}


id: MONDO:0029146
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Saul-Wilson syndrome (obsolete MONDO:0029146)","termid":"MONDO:0029146","xrefs":{"Monarch":{"xref_id":"0029146"}}}


id: FYPO:0004111
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal during G2 phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0000002","FYPO:0002274","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein phosphorylation during mitotic G2 phase","synonyms":[{"name":"decreased protein phosphorylation during mitotic G2 phase during vegetative growth","type":"exact"},{"name":"decreased protein phosphorylation during mitotic G2-phase","type":"exact"},{"name":"decreased protein/peptide phosphorylation during mitotic G2 phase","type":"exact"},{"name":"reduced protein phosphorylation during mitotic G2 phase","type":"exact"}],"termid":"FYPO:0004111"}


id: FYPO:0007862
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which centromeres and kinetochores remain associated with the spindle pole body during nuclear division in a that does not form a mitotic spindle or undergo cytokinesis.","definition_xrefs":["PomBase:jh","PomBase:mah","PMID:20967237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"},{"relation_name":"part_of","term_name":"nuclear division in absence of mitotic spindle","termid":"FYPO:0007859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000337"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"centromere clustering at nuclear periphery during nuclear division in absence of mitotic spindle","synonyms":[{"name":"abnormal centromere-SPB association at mitosis","type":"related"},{"name":"centromere clustering at nuclear periphery during nuclear division in absence of mitotic spindle during mitotic cell cycle","type":"related"},{"name":"centromere clustering at nuclear periphery during nuclear division in absence of mitotic spindle during vegetative growth","type":"exact"},{"name":"centromere clustering at nuclear periphery during nuclear fission","type":"exact"},{"name":"chromosome SPB attachment during nuclear fission","type":"exact"}],"termid":"FYPO:0007862"}


id: PBO:0048193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GA binding protein transcription factor subunit beta 1","termid":"PBO:0048193"}


id: PBO:0042384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD276 molecule","termid":"PBO:0042384"}


id: GO:0010306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of rhamnogalacturonan II, a low molecular mass (5 - 10KDa) pectic polysaccharide, conserved in the primary walls of dicotyledenous and monocotyledenous plants and gymnosperms.","definition_xrefs":["PMID:12754267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhamnogalacturonan II metabolic process","termid":"GO:0010396"},{"relation_name":"is_a","term_name":"cell wall pectin biosynthetic process","termid":"GO:0052325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0071554","GO:0008150","GO:0005975","GO:0044085"],"is_obsolete":false,"name":"rhamnogalacturonan II biosynthetic process","termid":"GO:0010306"}


id: MONDO:0017119
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete syndrome with microcephaly as major feature (obsolete MONDO:0017119)","secondary_identifiers":["icd11.foundation:2011102370","Orphanet:269528"],"termid":"MONDO:0017119","xrefs":{"Monarch":{"xref_id":"0017119"}}}


id: PR:O42888
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An aldo-keto reductase family 1 member E1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized oxidoreductase C8E4.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC8E4.04","secondary_identifiers":["UniProtKB:O42888"],"synonyms":[{"name":"Spom972h-Akr1e1","type":"exact"}],"termid":"PR:O42888"}


id: GO:0050405
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + [acetyl-CoA carboxylase] = ADP + [acetyl-CoA carboxylase] phosphate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete [acetyl-CoA carboxylase] kinase activity (obsolete GO:0050405)","synonyms":[{"name":"ACK2","type":"related"},{"name":"ACK3","type":"related"},{"name":"AMPK","type":"related"},{"name":"ATP:acetyl-CoA carboxylase phosphotransferase activity","type":"related"},{"name":"I-peptide kinase activity","type":"narrow"},{"name":"STK5","type":"related"},{"name":"acetyl coenzyme A carboxylase kinase (phosphorylating) activity","type":"related"},{"name":"acetyl-CoA carboxylase bound kinase activity","type":"narrow"},{"name":"acetyl-CoA carboxylase kinase (AMP-activated) activity","type":"related"},{"name":"acetyl-CoA carboxylase kinase (cAMP-independent) activity","type":"related"},{"name":"acetyl-CoA carboxylase kinase 2 activity","type":"narrow"},{"name":"acetyl-CoA carboxylase kinase activity","type":"related"},{"name":"acetyl-CoA carboxylase kinase-2 activity","type":"narrow"},{"name":"acetyl-CoA carboxylase kinase-3 (AMP-activated) activity","type":"narrow"},{"name":"acetyl-coenzyme A carboxylase kinase activity","type":"related"}],"termid":"GO:0050405"}


id: PBO:0062994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase C and casein kinase substrate in neurons 3","termid":"PBO:0062994"}


id: GO:0030026
data:
  {"annotated_genes":["SJAG_01007","SJAG_04867"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73361,75402],"is_not":false,"summary":null,"term":"GO:0030026"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of manganese ions within a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular monoatomic cation homeostasis","termid":"GO:0030003"},{"relation_name":"is_a","term_name":"manganese ion homeostasis","termid":"GO:0055071"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01007":null,"SJAG_04867":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0098771"],"is_obsolete":false,"name":"intracellular manganese ion homeostasis","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"cellular manganese ion homeostasis","type":"exact"},{"name":"manganese homeostasis","type":"broad"}],"termid":"GO:0030026","terms_by_termid":{"GO:0030026":null}}


id: MONDO:0016277
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cervical cancer","termid":"MONDO:0002974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant mixed epithelial and mesenchymal tumor of cervix uteri","secondary_identifiers":["UMLS:C5679806","GARD:20490","MEDGEN:1843195","NCIT:C40228","Orphanet:213782","ICD10CM:C53.0"],"synonyms":[{"name":"cervical malignant mixed epithelial and mesenchymal tumor","type":"exact"},{"name":"cervical malignant mixed epithelial and mesenchymal tumour","type":"exact"},{"name":"mixed epithelial and mesenchymal cancer of cervix uteri","type":"exact"}],"termid":"MONDO:0016277","xrefs":{"Monarch":{"xref_id":"0016277"}}}


id: PBO:0039384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amylase alpha 1A","termid":"PBO:0039384"}


id: PBO:0029975
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_dephosphorylation_during_mitotic_G2/M_transition","termid":"PBO:0029975"}


id: MONDO:0012038
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"speech-sound disorder","secondary_identifiers":["UMLS:C4019167","MESH:C563928","MEDGEN:866372","OMIM:608445"],"synonyms":[{"name":"SSD","type":"related"},{"name":"speech-sound disorder","type":"exact"}],"termid":"MONDO:0012038","xrefs":{"Monarch":{"xref_id":"0012038"}}}


id: PBO:0061273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOX4 pseudogene 1","termid":"PBO:0061273"}


id: PBO:0036256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved eukaryotic ER membrane protein implicated in cholesterol metabolism in human (predicted)","termid":"PBO:0036256"}


id: MONDO:0044275
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete carotid intimal medial thickness 1 (obsolete MONDO:0044275)","secondary_identifiers":["OMIM:609338"],"synonyms":[{"name":"Cimt1","type":"related"},{"name":"carotid intimal medial thickness 1","type":"related"},{"name":"intimal medial thickness of internal carotid artery","type":"related"}],"termid":"MONDO:0044275","xrefs":{"Monarch":{"xref_id":"0044275"}}}


id: MONDO:0018166
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oral submucous fibrosis (OSMF) is a chronic, progressive disease that alters the fibroelasticity of the oral submucosa, prevalent in India and Southeast Asia but rare elsewhere, and characterized by burning and pain in the oral cavity, loss of gustatory sensation, the presence of blanched fibrous bands and stiffening of the oral mucosa and oro-pharynx (leading to trismus and a progressive reduction in mouth opening) and an increased risk of developing oral squamous cell cancer (3-19%). It is usually associated with the chewing of the areca nut (an ingredient in betel quid) but the exact etiology is unknown and there is currently no effective treatment.","definition_xrefs":["Orphanet:357154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mouth disorder","termid":"MONDO:0006858"},{"relation_name":"is_a","term_name":"disorder of facial skeleton","termid":"MONDO:0023369"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oral submucous fibrosis","secondary_identifiers":["icd11.foundation:1798376929","MEDGEN:45213","MESH:D009914","NCIT:C34866","GARD:7264","ICD10CM:K13.5","UMLS:C0029172","EFO:1001818","ICD9:528.8","SCTID:32883009","DOID:5773"],"synonyms":[{"name":"OSMF","type":"exact"},{"name":"oral cavity submucous fibrosis","type":"exact"},{"name":"oral submucosal fibrosis","type":"exact"},{"name":"oral submucosal fibrosis, including of tongue","type":"exact"}],"termid":"MONDO:0018166","xrefs":{"Monarch":{"xref_id":"0018166"}}}


id: MONDO:0008011
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antigen defined by monoclonal antibody T87","secondary_identifiers":["OMIM:158040","UMLS:C1834756","MEDGEN:331821"],"synonyms":[{"name":"Msk2","type":"related"},{"name":"antigen defined by monoclonal antibody T87","type":"exact"}],"termid":"MONDO:0008011","xrefs":{"Monarch":{"xref_id":"0008011"}}}


id: PBO:0043676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CORO1C pseudogene 1","termid":"PBO:0043676"}


id: GO:0033381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of the protease granzyme B to a location within a secretory granule in a T cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of protease localization to T cell secretory granule","termid":"GO:0033378"},{"relation_name":"part_of","term_name":"granzyme B localization to T cell secretory granule","termid":"GO:0033380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"establishment of granzyme B localization to T cell secretory granule","synonyms":[{"name":"T-lymphocyte secretory granule storage of granzyme B","type":"related"},{"name":"establishment of granzyme B localisation in T cell secretory granule","type":"exact"},{"name":"establishment of granzyme B localization in T cell secretory granule","type":"exact"},{"name":"establishment of granzyme B localization in T lymphocyte secretory granule","type":"exact"},{"name":"establishment of granzyme B localization in T-cell secretory granule","type":"exact"},{"name":"establishment of granzyme B localization in T-lymphocyte secretory granule","type":"exact"}],"termid":"GO:0033381"}


id: GO:0102424
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (+)-sesaminol 2-O-beta-D-gentiobioside + UDP-alpha-D-glucose = (+)-sesaminol 2-O-beta-D-gentiotrioside + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete sesaminol-2-O-gentiobioside 1,6-glucosyltransferase activity (obsolete GO:0102424)","termid":"GO:0102424"}


id: MONDO:0016893
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of chromosome 11","termid":"MONDO:0016876"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of the short arm of chromosome 11","secondary_identifiers":["UMLS:C2931801","icd11.foundation:127054483","GARD:20815","MEDGEN:419498","Orphanet:261947"],"synonyms":[{"name":"partial deletion of chromosome 11p","type":"exact"},{"name":"partial deletion of the short arm of chromosome type 11","type":"exact"},{"name":"partial monosomy of chromosome 11p","type":"exact"},{"name":"partial monosomy of the short arm of chromosome 11","type":"exact"}],"termid":"MONDO:0016893","xrefs":{"Monarch":{"xref_id":"0016893"}}}


id: PBO:0091159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine aminopeptidase Fma2","termid":"PBO:0091159"}


id: GO:0021692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the cerebellar Purkinje cell layer is generated and organized. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells.","definition_xrefs":["ISBN:0838580343","GO_REF:0000021","GOC:cls","GOC:dgh","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"cerebellar Purkinje cell layer development","termid":"GO:0021680"},{"relation_name":"part_of","term_name":"cerebellar cortex morphogenesis","termid":"GO:0021696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar Purkinje cell layer morphogenesis","termid":"GO:0021692"}


id: GO:1990232
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of phosphomannomutase activity.","definition_xrefs":["PMID:16540464","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular phosphotransferase complex","termid":"GO:1990233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"}],"interesting_parent_ids":["GO:0005575","GO:0005829","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"phosphomannomutase complex","synonyms":[{"name":"PMM-1 complex","type":"narrow"},{"name":"PMM-1 dimer","type":"narrow"},{"name":"PMM-2 complex","type":"narrow"},{"name":"PMM-2 dimer","type":"narrow"}],"termid":"GO:1990232"}


id: PBO:0064952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 4","termid":"PBO:0064952"}


id: PBO:0052744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 36","termid":"PBO:0052744"}


id: PBO:0089488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoketolase family protein","termid":"PBO:0089488"}


id: GO:0010294
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-abscisate + UDP-D-glucose = abscisic acid glucose ester + UDP.","definition_xrefs":["DOI:10.1016/j.tetasy.2004.11.062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"abscisic acid glucosyltransferase activity","secondary_identifiers":["RHEA:31031","MetaCyc:RXN-8155"],"termid":"GO:0010294"}


id: PBO:0028607
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_serine_phosphorylation_during_vegetative_growth","termid":"PBO:0028607"}


id: GO:1901255
data:
  {"annotated_genes":["SJAG_02334","SJAG_02031","SJAG_02556","SJAG_03734","SJAG_02200"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69899,74688,92765,93430,109786],"is_not":false,"summary":null,"term":"GO:1901255"}]},"cv_name":"biological_process","definition":"Any nucleotide-excision repair that is involved in interstrand cross-link repair.","definition_xrefs":["GOC:TermGenie","PMID:22064477"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair","termid":"GO:0006289"},{"relation_name":"part_of","term_name":"interstrand cross-link repair","termid":"GO:0036297"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02031":null,"SJAG_02200":null,"SJAG_02334":null,"SJAG_02556":null,"SJAG_03734":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0006281","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"nucleotide-excision repair involved in interstrand cross-link repair","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"NER involved in ICL repair","type":"exact"},{"name":"NER involved in interstrand cross-link repair","type":"exact"},{"name":"nucleotide-excision repair involved in ICL repair","type":"exact"}],"termid":"GO:1901255","terms_by_termid":{"GO:1901255":null}}


id: PBO:0058561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6503","termid":"PBO:0058561"}


id: GO:0031348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of defense response","termid":"GO:0031347"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"negatively_regulates","term_name":"defense response","termid":"GO:0006952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of defense response","synonyms":[{"name":"down regulation of defense response","type":"exact"},{"name":"down-regulation of defense response","type":"exact"},{"name":"downregulation of defense response","type":"exact"},{"name":"inhibition of defense response","type":"narrow"}],"termid":"GO:0031348"}


id: PBO:0028002
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-lagging_mitotic_chromosomes,_with_complete_sister_chromatid_separation","termid":"PBO:0028002"}


id: PBO:0070861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13 pseudogene 14","termid":"PBO:0070861"}


id: PBO:0031033
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_peroxisome_organization","termid":"PBO:0031033"}


id: MOD:00735
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a hexosuronic acid group through a glycosidic bond.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylated residue","termid":"MOD:00693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"hexosuronylated","synonyms":[{"name":"HexA","type":"exact"}],"termid":"MOD:00735"}


id: PBO:0086649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; YCR087C-A is not an essential gene","termid":"PBO:0086649"}


id: PBO:0047994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FSHD region gene 2 family member K, pseudogene","termid":"PBO:0047994"}


id: MONDO:0017327
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Primary non-gestational choriocarcinoma of ovary is a rare ovarian germ cell malignant tumor, arising from primordial germ cells, usually presenting with nausea, vomiting, abdominal pain, menstrual irregularities, and characterized by fast growth pattern, metastasis to lung, liver and brain and production of human chorionic gonadotrophin (hCG). It is apparently chemoresistant and has a worse prognosis than gestational choriocarcinoma and hence should be distinguished from the latter by DNA polymorphism.","definition_xrefs":["Orphanet:289356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant germ cell tumor of ovary","termid":"MONDO:0018171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"primary non-gestational choriocarcinoma of ovary","secondary_identifiers":["MEDGEN:906353","UMLS:C4274424","GARD:21136","SCTID:716588005"],"synonyms":[{"name":"NGCO","type":"exact"},{"name":"primary non-gestational ovarian choriocarcinoma","type":"exact"}],"termid":"MONDO:0017327","xrefs":{"Monarch":{"xref_id":"0017327"}}}


id: PBO:0043128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIBAR1 divergent transcript","termid":"PBO:0043128"}


id: PATO:0001208
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An odor quality inhering in a bearer by virtue of the bearer's lacking odour.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"odor","termid":"PATO:0000058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"odorless","termid":"PATO:0001208"}


id: PBO:0047811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box M1","termid":"PBO:0047811"}


id: FYPO:0004293
data:
  {"alleles_by_uniquename":{"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02695:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02695","name":"tip1delta","uniquename":"SJAG_02695:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"G788E","gene_uniquename":"SJAG_04280","name":"wee1-G788E","uniquename":"SJAG_04280:allele-2"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[119036],"is_not":false,"summary":null,"term":"FYPO:0004293"}],"single_locus_phenotype":[{"annotations":[118941],"is_not":false,"summary":null,"term":"FYPO:0004293"},{"annotations":[118944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007801"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which a cell or hypha has a septum in an abnormal location. The normal location during yeast-form growth is at the midpoint of the long axis of the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum","termid":"FYPO:0004292"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02392":null,"SJAG_02695":null,"SJAG_04280":null,"SJAG_04522":null},"genotype_count":3,"genotypes_by_uniquename":{"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]},"tip1delta":{"display_name":"tip1delta","display_uniquename":"tip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02695:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04280","SJAG_04522"],"name":"mislocalized septum","references_by_uniquename":{"PMID:30664646":null,"PMID:30726171":null},"single_locus_annotated_genes":["SJAG_02695","SJAG_02392"],"single_locus_genotype_uniquenames":["pom1delta","tip1delta"],"synonyms":[{"name":"abnormal septum localization","type":"related"},{"name":"abnormal septum location","type":"exact"},{"name":"abnormal septum position","type":"exact"},{"name":"abnormal septum positioning","type":"related"},{"name":"asymmetric septum","type":"related"},{"name":"asymmetrically located septum","type":"related"},{"name":"mislocalised septum","type":"exact"},{"name":"misplaced septum","type":"exact"}],"termid":"FYPO:0004293","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0004293":null,"FYPO:0007801":null,"FYPO_EXT:0000001":null}}


id: PBO:0046933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 50 member A","termid":"PBO:0046933"}


id: PBO:0047958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, folic acid type, rare, fra(22)(q13)","termid":"PBO:0047958"}


id: MONDO:0015365
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Autosomal dominant form of hereditary sensory and autonomic neuropathy.","definition_xrefs":["MONDO:patterns/autosomal_dominant"],"gene_count":0,"genotype_count":0,"name":"obsolete autosomal dominant hereditary sensory and autonomic neuropathy (obsolete MONDO:0015365)","secondary_identifiers":["Orphanet:140474"],"synonyms":[{"name":"hereditary sensory and autonomic neuropathy, autosomal dominant","type":"exact"}],"termid":"MONDO:0015365","xrefs":{"Monarch":{"xref_id":"0015365"}}}


id: MONDO:0100193
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Liver failure that develops slowly and gradually for some time, possibly for years, often as the result of cirrhosis, or malnutrition.","direct_ancestors":[{"relation_name":"is_a","term_name":"liver failure","termid":"MONDO:0100192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"chronic liver failure","secondary_identifiers":["NCIT:C84428","MEDGEN:423539","UMLS:C2936476"],"synonyms":[{"name":"ESLD","type":"exact"},{"name":"end stage liver disease","type":"exact"},{"name":"end stage liver disease (decompensated liver disease)","type":"exact"},{"name":"end-stage liver disease","type":"exact"}],"termid":"MONDO:0100193","xrefs":{"Monarch":{"xref_id":"0100193"}}}


id: PBO:0004431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex bromodomain subunit Spt7","termid":"PBO:0004431"}


id: PBO:0091047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L12","termid":"PBO:0091047"}


id: MONDO:0018756
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"euthyroid Graves orbitopathy","secondary_identifiers":["GARD:21940","DOID:0081120","MEDGEN:1803712","Orphanet:466682","UMLS:C5680004"],"synonyms":[{"name":"euthyroid Graves ophthalmopathy","type":"exact"}],"termid":"MONDO:0018756","xrefs":{"Monarch":{"xref_id":"0018756"}}}


id: GO:0010489
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-4-keto-6-deoxyglucose = UDP-4-keto-rhamnose.","definition_xrefs":["PMID:17190829","GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity","termid":"GO:0010489"}


id: GO:0016340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding of a cell to the extracellular matrix via adhesion molecules that require the presence of calcium for the interaction.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-matrix adhesion","termid":"GO:0007160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"calcium-dependent cell-matrix adhesion","termid":"GO:0016340"}


id: MONDO:0015064
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well differentiated, low or intermediate grade tumor with neuroendocrine differentiation that arises from the jejunum.","definition_xrefs":["NCIT:C135090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"jejunal neoplasm","termid":"MONDO:0002564"},{"relation_name":"is_a","term_name":"small intestine neuroendocrine tumor, well differentiated, low or intermediate grade","termid":"MONDO:0002995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"jejunal neuroendocrine tumor, well differentiated, low or intermediate grade","secondary_identifiers":["GARD:19752","Orphanet:100077","MEDGEN:1619460","UMLS:C4525626"],"synonyms":[{"name":"jejunal neuroendocrine neoplasm","type":"exact"},{"name":"jejunal neuroendocrine tumor","type":"related"},{"name":"jejunal neuroendocrine tumour","type":"related"}],"termid":"MONDO:0015064","xrefs":{"Monarch":{"xref_id":"0015064"}}}


id: GO:0051178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cell cycle process in which chromosome structure is altered from the condensed form held during meiosis to the relaxed dispersed form held in resting cells.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete meiotic chromosome decondensation (obsolete GO:0051178)","termid":"GO:0051178"}


id: GO:1904395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of skeletal muscle acetylcholine-gated channel clustering.","definition_xrefs":["PMID:7722643","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of receptor clustering","termid":"GO:1903911"},{"relation_name":"is_a","term_name":"regulation of skeletal muscle acetylcholine-gated channel clustering","termid":"GO:1904393"},{"relation_name":"positively_regulates","term_name":"skeletal muscle acetylcholine-gated channel clustering","termid":"GO:0071340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of skeletal muscle acetylcholine-gated channel clustering","synonyms":[{"name":"activation of skeletal muscle AChR clustering","type":"narrow"},{"name":"activation of skeletal muscle acetylcholine-gated channel clustering","type":"narrow"},{"name":"activation of skeletal muscle nicotinic acetylcholine receptor clustering","type":"narrow"},{"name":"positive regulation of skeletal muscle AChR clustering","type":"exact"},{"name":"positive regulation of skeletal muscle nicotinic acetylcholine receptor clustering","type":"exact"},{"name":"up regulation of skeletal muscle AChR clustering","type":"exact"},{"name":"up regulation of skeletal muscle acetylcholine-gated channel clustering","type":"exact"},{"name":"up regulation of skeletal muscle nicotinic acetylcholine receptor clustering","type":"exact"},{"name":"up-regulation of skeletal muscle AChR clustering","type":"exact"},{"name":"up-regulation of skeletal muscle acetylcholine-gated channel clustering","type":"exact"},{"name":"up-regulation of skeletal muscle nicotinic acetylcholine receptor clustering","type":"exact"},{"name":"upregulation of skeletal muscle AChR clustering","type":"exact"},{"name":"upregulation of skeletal muscle acetylcholine-gated channel clustering","type":"exact"},{"name":"upregulation of skeletal muscle nicotinic acetylcholine receptor clustering","type":"exact"}],"termid":"GO:1904395"}


id: PBO:0083641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Eisosome core component; eisosomes are large immobile cell cortex structures associated with endocytosis; detected in phosphorylated state in mitochondria; phosphorylated on Thr233 upon Pkc1p hyperactivation in a Slt2p MAPK-dependent fashion; null mutant shows activation of Pkc1p/Ypk1p stress resistance pathways; member of BAR domain family; protein increases in abundance and relocalizes from plasma membrane to cytoplasm upon DNA replication stress","termid":"PBO:0083641"}


id: GO:0071942
data:
  {"annotated_genes":["SJAG_01049","SJAG_01887"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72094,72372],"is_not":false,"summary":null,"term":"GO:0071942"}]},"cv_name":"cellular_component","definition":"A nucleotide-excision repair complex that is involved in damage sensing during global genome nucleotide excision repair (GG-NER). It is part of the pre-incision (or initial recognition) complex bound to sites of DNA damage. In human, it is composed of XPC, RAD23B and CETN2.","definition_xrefs":["PMID:19941824","PMID:15964821","PMID:11279143"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair complex","termid":"GO:0000109"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01049":null,"SJAG_01887":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"XPC complex","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0071942","terms_by_termid":{"GO:0071942":null}}


id: GO:0051263
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of serine to N-[5-(6-O-seryl-beta-glucosyl)-2,3-dihydroxybenzoyl]-O-[N-(2,3-dihydroxybenzoyl)-O-[N-(2,3-dihydroxybenzoyl)seryl]seryl]serine as found in microcin E492 produced from the mceA gene in plasmid pJAM229 of the E. coli VCS257 strain and the K. pneumoniae RYC492 strain.","definition_xrefs":["RESID:AA0374"],"gene_count":0,"genotype_count":0,"name":"obsolete microcin E492 biosynthetic process by siderophore ester modification of peptidyl-serine (obsolete GO:0051263)","synonyms":[{"name":"microcin E492 anabolism by siderophore ester modification of peptidyl-serine","type":"exact"},{"name":"microcin E492 formation by siderophore ester modification of peptidyl-serine","type":"exact"},{"name":"microcin E492 synthesis by siderophore ester modification of peptidyl-serine","type":"exact"}],"termid":"GO:0051263"}


id: PBO:0082006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger SWIM-type containing 5 pseudogene 2","termid":"PBO:0082006"}


id: FYPO:0000165
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype in which regulation of conjugation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype","termid":"FYPO:0000145"},{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal regulation of mating","synonyms":[{"name":"abnormal regulation of conjugation with cellular fusion","type":"exact"}],"termid":"FYPO:0000165"}


id: GO:0030455
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. MAPKKK cascade involved in transducing mating pheromone signal in a fungus.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete MAPKKK cascade (mating sensu Fungi) (obsolete GO:0030455)","synonyms":[{"name":"MAPKKK cascade (mating sensu Fungi)","type":"exact"}],"termid":"GO:0030455"}


id: MOD:00758
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to O4-(N-acetylamino)glucosyl-L-hydroxyproline.","definition_xrefs":["PubMed:9660787","RESID:AA0390","PubMed:15238247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylaminoglucosylated residue","termid":"MOD:00448"},{"relation_name":"is_a","term_name":"O4-(N-acetylamino)hexosyl-L-hydroxyproline","termid":"MOD:01677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O4-(N-acetylamino)glucosyl-L-hydroxyproline","synonyms":[{"name":"(2S,4R)-4-[2-acetamido-2-deoxy-alpha-D-glucopyranosyloxy]pyrrolidine-2-carboxylic acid","type":"exact"},{"name":"4-(N-acetylglucosaminyloxy)proline","type":"exact"},{"name":"4-[(2-N-acetylamino)-alpha-D-glucopyranosyl]oxyproline","type":"exact"},{"name":"CARBOHYD O-linked (GlcNAc) hydroxyproline","type":"exact"},{"name":"HexNAc","type":"related"},{"name":"O4-(N-acetylamino)glucosyl-L-hydroxyproline","type":"exact"},{"name":"O4-glycosyl-hydroxyproline","type":"exact"},{"name":"O4GlcNAcHyPro","type":"exact"},{"name":"alpha-2-(N-acetylamino)glucopyranosyl-4-hydroxyproline","type":"exact"}],"termid":"MOD:00758"}


id: PBO:0069248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 503, pseudogene","termid":"PBO:0069248"}


id: PBO:0113252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Palmitoylated vacuolar membrane-localized casein kinase I isoform; negatively regulates vacuole fusion during hypertonic stress via phosphorylation of Vps41p; shares essential functions with Hrr25p; targeted to vacuole via AP-3 pathway; regulates vesicle fusion in AP-3 pathway","termid":"PBO:0113252"}


id: MONDO:0005250
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammatory process that involves the chorionic villi (villitis) of the placenta.","definition_xrefs":["EFO:0003110"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"},{"relation_name":"is_a","term_name":"disorder of extraembryonic membrane","termid":"MONDO:0045013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"placental villitis","secondary_identifiers":["UMLS:C1270169","MEDGEN:693918","SCTID:388604008"],"termid":"MONDO:0005250","xrefs":{"Monarch":{"xref_id":"0005250"}}}


id: _global:assayed_transcript
data:
  {"annotation_feature_type":"gene","cv_name":"fypo_extension_relations","definition":"Relation between a phenotype and a transcript, such as a gene product or transcript type in SO, with which the phenotype was assayed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assayed_using","termid":"_global:assayed_using"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assayed_transcript","termid":"_global:assayed_transcript"}


id: MONDO:0011280
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A schizophrenia that has material basis in an autosomal dominant mutation of SCZD6 on chromosome 8p21.","definition_xrefs":["DOID:0070082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"schizophrenia, susceptibility to","termid":"MONDO:0100182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"schizophrenia 6","secondary_identifiers":["OMIM:603013","MEDGEN:350380","UMLS:C1864275"],"synonyms":[{"name":"SCZD6","type":"exact"},{"name":"schizophrenia 6","type":"exact"},{"name":"schizophrenia susceptibility locus, chromosome 8P-related","type":"exact"}],"termid":"MONDO:0011280","xrefs":{"Monarch":{"xref_id":"0011280"}}}


id: GO:0008218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The production of light by certain enzyme-catalyzed reactions in cells.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bioluminescence","secondary_identifiers":["Wikipedia:Bioluminescence"],"termid":"GO:0008218"}


id: PBO:0077666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor superfamily member 12A","termid":"PBO:0077666"}


id: PBO:0074938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 103C","termid":"PBO:0074938"}


id: PBO:0002585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum resident protein required for packaging into COPII vesicles (predicted)","termid":"PBO:0002585"}


id: PBO:0028186
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_in_plasma_membrane","termid":"PBO:0028186"}


id: PATO:0000183
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000183 limb tone (obsolete PATO:0000183)","termid":"PATO:0000183"}


id: MONDO:0031003
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hypercholanemia, familial","termid":"MONDO:0100327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"hypercholanemia, familial, 2","secondary_identifiers":["MEDGEN:1780531","UMLS:C5543243","OMIM:619256","GARD:18341"],"synonyms":[{"name":"FHCA2","type":"exact"},{"name":"NTCP Deficiency","type":"exact"},{"name":"hypercholanemia, familial 2","type":"exact"}],"termid":"MONDO:0031003","xrefs":{"Monarch":{"xref_id":"0031003"}}}


id: PBO:0057556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 671","termid":"PBO:0057556"}


id: PBO:0051642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol monophosphatase 1 pseudogene 1","termid":"PBO:0051642"}


id: PBO:0011087
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae URA1","termid":"PBO:0011087"}


id: PBO:0065806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB2B, member RAS oncogene family","termid":"PBO:0065806"}


id: PBO:0005827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosine deaminase (predicted)","termid":"PBO:0005827"}


id: PBO:0076007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STIMATE-MUSTN1 readthrough","termid":"PBO:0076007"}


id: GO:0046243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of p-xylene (1,4-dimethylbenzene), a colorless, liquid aromatic hydrocarbon.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete p-xylene biosynthetic process (obsolete GO:0046243)","synonyms":[{"name":"p-xylene anabolism","type":"exact"},{"name":"p-xylene biosynthesis","type":"exact"},{"name":"p-xylene biosynthetic process","type":"exact"},{"name":"p-xylene formation","type":"exact"},{"name":"p-xylene synthesis","type":"exact"},{"name":"para-xylene biosynthesis","type":"exact"},{"name":"para-xylene biosynthetic process","type":"exact"}],"termid":"GO:0046243"}


id: PBO:0066300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinol binding protein 2","termid":"PBO:0066300"}


id: SO:0002191
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory region that controls epigenetic imprinting and affects the expression of target genes in an allele- or parent-of-origin-specific manner. Associated regulatory elements may include differentially methylated regions and non-coding RNAs.","direct_ancestors":[{"relation_name":"is_a","term_name":"epigenetically_modified_region","termid":"SO:0001720"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"imprinting_control_region","synonyms":[{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:imprinting_control_region","type":"exact"},{"name":"imprinting control region","type":"exact"}],"termid":"SO:0002191"}


id: MONDO:0016861
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Alagille syndrome","termid":"MONDO:0007318"},{"relation_name":"is_a","term_name":"partial monosomy of the short arm of chromosome 20","termid":"MONDO:0016898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0005328","MONDO:0004335","MONDO:0005267"],"is_obsolete":false,"name":"Alagille syndrome due to 20p12 microdeletion","secondary_identifiers":["MEDGEN:1826025","GARD:17250","UMLS:C5679679","Orphanet:261600"],"synonyms":[{"name":"Alagille syndrome due to del(20)(p12)","type":"exact"},{"name":"Alagille syndrome due to monosomy 20p12","type":"exact"},{"name":"Alagille-Watson syndrome due to monosomy 20p12","type":"exact"},{"name":"Arteriohepatic dysplasia due to monosomy 20p12","type":"exact"},{"name":"syndromic bile duct paucity due to monosomy 20p12","type":"exact"}],"termid":"MONDO:0016861","xrefs":{"Monarch":{"xref_id":"0016861"}}}


id: PBO:0068954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 198, pseudogene","termid":"PBO:0068954"}


id: FYPO:0001968
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of 1,3-beta-D-glucan synthase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased glucosyltransferase activity","termid":"FYPO:0001089"},{"relation_name":"is_a","term_name":"abnormal 1,3-beta-D-glucan synthase activity","termid":"FYPO:0001967"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"increased 1,3-beta-D-glucan synthase activity","termid":"FYPO:0001968"}


id: PBO:0066647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras and Rab interactor 1","termid":"PBO:0066647"}


id: PBO:0030771
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K14_acetylation_at_centromere_outer_repeat","termid":"PBO:0030771"}


id: SO:0002262
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An absolute reference to the strand. When a chromosome has p and q arms, the Watson strand is the strand whose 5'-end is on the short arm of the chromosome. Of note, the term 'plus strand' is typically based on a reference sequence where it's preferred for the plus strand to be the Watson strand, but might not be and 'plus strand' is therefore not an exact synonym.","definition_xrefs":["PMID:21303550"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome_part","termid":"SO:0000830"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Watson_strand","synonyms":[{"name":"Forward strand","type":"exact"},{"name":"Plus strand","type":"broad"},{"name":"Top strand","type":"exact"},{"name":"Watson strand","type":"exact"}],"termid":"SO:0002262"}


id: PBO:0059663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 29","termid":"PBO:0059663"}


id: PBO:0075448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 2 like","termid":"PBO:0075448"}


id: GO:0034362
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lipoprotein particle, rich in cholesterol esters and low in triglycerides that is typically composed of APOB100 and APOE and has a density of 1.02-1.06 g/ml and a diameter of between 20-25 nm. LDL particles are formed from VLDL particles (via IDL) by the loss of triglyceride and gain of cholesterol ester. They transport endogenous cholesterol (and to some extent triglycerides) from peripheral tissues back to the liver.","definition_xrefs":["GOC:BHF","GOC:expert_pt","GOC:rl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma lipoprotein particle","termid":"GO:0034358"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005576","GO:0032991"],"is_obsolete":false,"name":"low-density lipoprotein particle","synonyms":[{"name":"LDL complex","type":"exact"},{"name":"LDL particle","type":"exact"},{"name":"low-density lipoprotein complex","type":"exact"}],"termid":"GO:0034362"}


id: MONDO:0016794
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete maternally-inherited mitochondrial myopathy (obsolete MONDO:0016794)","secondary_identifiers":["Orphanet:254788"],"termid":"MONDO:0016794","xrefs":{"Monarch":{"xref_id":"0016794"}}}


id: GO:0031315
data:
  {"annotated_genes":["SJAG_00655"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[106966],"is_not":false,"summary":null,"term":"GO:0031315"}]},"cv_name":"cellular_component","definition":"The component of a mitochondrial outer membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:mah","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of organelle membrane","termid":"GO:0031312"},{"relation_name":"part_of","term_name":"mitochondrial outer membrane","termid":"GO:0005741"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00655":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"}],"interesting_parent_ids":["GO:0005737","GO:0005739","GO:0005575"],"is_obsolete":false,"name":"extrinsic component of mitochondrial outer membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"extrinsic to mitochondrial outer membrane","type":"narrow"}],"termid":"GO:0031315","terms_by_termid":{"GO:0031315":null}}


id: PBO:0110832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, zf-GATA-type, amino acid sensing, Fil1","termid":"PBO:0110832"}


id: GO:0031786
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1B melatonin receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melatonin receptor binding","termid":"GO:0031784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"type 1B melatonin receptor binding","synonyms":[{"name":"type 1B melatonin receptor ligand","type":"narrow"}],"termid":"GO:0031786"}


id: PR:Q9C115
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rec25 gene.","definition_xrefs":["UniProtKB:Q9C115","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic recombination protein rec25 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A5.18c","synonyms":[{"name":"Spom972h-rec25","type":"exact"},{"name":"meiotically up-regulated gene 19 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9C115"}


id: PBO:0011137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Pho7","termid":"PBO:0011137"}


id: PBO:0027962
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_glutathione_level_during_nitrogen_starvation","termid":"PBO:0027962"}


id: GO:0032577
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a linoleoyl ((9Z,12Z)-octadeca-9,12-dienoyl) group from phosphatidylcholine to an oxygen atom on a cardiolipin molecule.","definition_xrefs":["GOC:mah","GOC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-linoleoyltransferase activity","termid":"GO:0032576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"phosphatidylcholine:cardiolipin O-linoleoyltransferase activity","synonyms":[{"name":"phosphatidylcholine:cardiolipin linoleoyltransferase","type":"exact"}],"termid":"GO:0032577"}


id: GO:0036355
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-tyrosine + S-adenosyl-L-methionine + reduced acceptor = 2-iminoacetate + 4-methylphenol + 5'-deoxyadenosine + L-methionine + acceptor + 2 H+.","definition_xrefs":["MetaCyc:RXN-11319","PMID:17403671","GOC:crds","EC:4.1.99.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-iminoacetate synthase activity","secondary_identifiers":["RHEA:26361"],"termid":"GO:0036355"}


id: PBO:0113339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; regulates actin cable stability and branched-chain amino acid (BCAA) metabolism; involved in mitochondrial quality control and longevity; proposed to be involved in resistance to streptozotocin and camptothecin; localizes to punctate cytosolic structures","termid":"PBO:0113339"}


id: PBO:0083957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase); synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure","termid":"PBO:0083957"}


id: GO:0006103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving oxoglutarate, the dianion of 2-oxoglutaric acid. It is a key constituent of the TCA cycle and a key intermediate in amino-acid metabolism.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"2-oxoglutarate metabolic process","secondary_identifiers":["Reactome:R-HSA-2978092","Reactome:R-HSA-880009"],"synonyms":[{"name":"2-ketoglutarate metabolic process","type":"exact"},{"name":"2-ketoglutarate metabolism","type":"exact"},{"name":"2-oxoglutarate metabolism","type":"exact"},{"name":"alpha-ketoglutarate metabolic process","type":"exact"},{"name":"alpha-ketoglutarate metabolism","type":"exact"},{"name":"alpha-oxoglutarate metabolic process","type":"exact"},{"name":"alpha-oxoglutarate metabolism","type":"exact"}],"termid":"GO:0006103"}


id: PBO:0088798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane Nramp family manganese ion transmembrane transporter","termid":"PBO:0088798"}


id: MONDO:0018394
data:
  {"annotated_genes":["SJAG_01837"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[84939],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009461"}]},"cv_name":"mondo","definition":"Male infertility with teratozoospermia due to single gene mutation is a rare, genetic male infertility due to sperm disorder characterized by the presence of spermatozoa with abnormal morphology, such as macrozoospermia or globozoospermia, in over 85% of sperm, resulting from mutation in a single gene known to cause teratozoospermia. It is a heterogeneous group that includes a wide range of abnormal sperm phenotypes affecting, solely or simultaneously, head, neck, midpiece, and/or tail.","definition_xrefs":["Orphanet:399808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male infertility","termid":"MONDO:0005372"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01837":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"male infertility with teratozoospermia due to single gene mutation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:17654","MEDGEN:1643966","SCTID:764096006","UMLS:C4706677"],"termid":"MONDO:0018394","terms_by_termid":{"MONDO:0009461":null},"xrefs":{"Monarch":{"xref_id":"0018394"}}}


id: PBO:0042737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENPN antisense RNA 1","termid":"PBO:0042737"}


id: MONDO:0002044
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ectropion","termid":"MONDO:0002043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"spastic ectropion","secondary_identifiers":["DOID:1571","SCTID:80846000","UMLS:C0155195","ICD9:374.13","MEDGEN:509843"],"termid":"MONDO:0002044","xrefs":{"Monarch":{"xref_id":"0002044"}}}


id: FYPO:0004698
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of heme binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"decreased heme binding","synonyms":[{"name":"decreased haem binding","type":"exact"},{"name":"reduced heme binding","type":"exact"}],"termid":"FYPO:0004698"}


id: MONDO:0030366
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dilated cardiomyopathy that is characterized by neonatal or early childhood onset of dilated cardiomyopathy, with rapid progression to cardiac failure and death unless patients undergo cardiac transplantation and that has material basis in homozygous or compound heterozygous mutation in the JPH2 gene on chromosome 20q13.","definition_xrefs":["DOID:0081161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial isolated dilated cardiomyopathy","termid":"MONDO:0700335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cardiomyopathy, dilated, 2E","secondary_identifiers":["MEDGEN:1794180","OMIM:619492","UMLS:C5561970"],"synonyms":[{"name":"CMD2E","type":"exact"},{"name":"cardiomyopathy, dilated, 2E","type":"exact"}],"termid":"MONDO:0030366","xrefs":{"Monarch":{"xref_id":"0030366"}}}


id: PBO:0071897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 35","termid":"PBO:0071897"}


id: PATO:0000498
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A duration quality of a process which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"duration","termid":"PATO:0001309"},{"relation_name":"is_a","term_name":"increased process quality","termid":"PATO:0002304"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased duration","secondary_identifiers":["PATO:0000715"],"synonyms":[{"name":"chronic","type":"related"},{"name":"high time","type":"exact"},{"name":"increased period","type":"exact"},{"name":"increased time","type":"exact"},{"name":"prolonged period","type":"related"},{"name":"slow time","type":"related"}],"termid":"PATO:0000498"}


id: PBO:0111886
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KASH domain protein","termid":"PBO:0111886"}


id: PBO:0051867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon stimulated exonuclease gene 20 like 2","termid":"PBO:0051867"}


id: PBO:0111760
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin family","termid":"PBO:0111760"}


id: MONDO:0012748
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ciliary dyskinesia in which the cause of the disease is a mutation in the DNAH11 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia","termid":"MONDO:0016575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia 7","secondary_identifiers":["MESH:C567504","GARD:15533","MEDGEN:394834","DOID:0110605","OMIM:611884","UMLS:C2678473"],"synonyms":[{"name":"CILD7","type":"exact"},{"name":"DNAH11 primary ciliary dyskinesia","type":"exact"},{"name":"ciliary dyskinesia, primary, 7","type":"related"},{"name":"ciliary dyskinesia, primary, 7, with or without situs inversus","type":"related"},{"name":"ciliary dyskinesia, primary, type 7","type":"exact"},{"name":"primary ciliary dyskinesia 7","type":"exact"},{"name":"primary ciliary dyskinesia 7 with or without situs inversus","type":"exact"},{"name":"primary ciliary dyskinesia caused by mutation in DNAH11","type":"exact"},{"name":"primary ciliary dyskinesia type 7","type":"exact"}],"termid":"MONDO:0012748","xrefs":{"Monarch":{"xref_id":"0012748"}}}


id: GO:0070265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A type of cell death that is morphologically characterized by an increasingly translucent cytoplasm, swelling of organelles, minor ultrastructural modifications of the nucleus (specifically, dilatation of the nuclear membrane and condensation of chromatin into small, irregular, circumscribed patches) and increased cell volume (oncosis), culminating in the disruption of the plasma membrane and subsequent loss of intracellular contents. Necrotic cells do not fragment into discrete corpses as their apoptotic counterparts do. Moreover, their nuclei remain intact and can aggregate and accumulate in necrotic tissues.","definition_xrefs":["PMID:18846107","PMID:20823910","GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete necrotic cell death (obsolete GO:0070265)","synonyms":[{"name":"cellular necrosis","type":"exact"},{"name":"necrosis","type":"broad"}],"termid":"GO:0070265"}


id: GO:0033532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of stachyose, the tetrasaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"raffinose family oligosaccharide biosynthetic process","termid":"GO:0010325"},{"relation_name":"is_a","term_name":"stachyose metabolic process","termid":"GO:0033531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"stachyose biosynthetic process","secondary_identifiers":["MetaCyc:PWY-5337"],"synonyms":[{"name":"stachyose anabolism","type":"exact"},{"name":"stachyose biosynthesis","type":"exact"},{"name":"stachyose formation","type":"exact"},{"name":"stachyose synthesis","type":"exact"}],"termid":"GO:0033532"}


id: GO:0090150
data:
  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id: GO:0097486
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the outermost membrane of a multivesicular body.","definition_xrefs":["GOC:pde","PMID:21183070"],"direct_ancestors":[{"relation_name":"is_a","term_name":"late endosome lumen","termid":"GO:0031906"},{"relation_name":"part_of","term_name":"multivesicular body","termid":"GO:0005771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005768","GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"multivesicular body lumen","termid":"GO:0097486"}


id: PBO:0074518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA A10","termid":"PBO:0074518"}


id: PBO:0049684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOXD antisense growth-associated long non-coding RNA","termid":"PBO:0049684"}


id: PBO:0088364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase type 11","termid":"PBO:0088364"}


id: GO:0035244
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group to the carbon atom of an arginine residue in a protein. This modification has been detected in anaerobic bacteria.","definition_xrefs":["GOC:bf","PMID:29743535","PMID:33162960","RHEA:66028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-methyltransferase activity","termid":"GO:0008169"},{"relation_name":"is_a","term_name":"protein methyltransferase activity","termid":"GO:0008276"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0008276","GO:0016740","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"protein-arginine C-methyltransferase activity","secondary_identifiers":["EC:2.1.1.379"],"synonyms":[{"name":"peptidyl arginine C-methyltransferase activity","type":"exact"},{"name":"peptidyl-arginine C-methylase activity","type":"exact"},{"name":"peptidyl-arginine C-methyltransferase activity","type":"exact"},{"name":"protein-arginine C-methylase activity","type":"exact"}],"termid":"GO:0035244"}


id: GO:1901847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving nicotinate.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00830"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkaloid metabolic process","termid":"GO:0009820"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"pyridine-containing compound metabolic process","termid":"GO:0072524"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"nicotinate metabolic process","synonyms":[{"name":"nicotinate metabolism","type":"exact"}],"termid":"GO:1901847"}


id: MOD:01511
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Applied Biosystems iTRAQ4plex-117 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue","termid":"MOD:01506"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent O-acylated residue","termid":"MOD:01713"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ4plex-117 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"iTRAQ4plex","type":"related"}],"termid":"MOD:01511"}


id: PBO:0114381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane carboxylic acid transmembrane transporter","termid":"PBO:0114381"}


id: PBO:0085529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S28, no bacterial homolog; has an extraribosomal function in autoregulation, in which Rps28Bp binds to a decapping complex via Edc3p, which then binds to RPS28B mRNA leading to its decapping and degradation; RPS28B has a paralog, RPS28A, that arose from the whole genome duplication","termid":"PBO:0085529"}


id: PBO:0053073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lamin B receptor","termid":"PBO:0053073"}


id: PATO:0001913
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue.","definition_xrefs":["PATOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physiological state","termid":"PATO:0001912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ictal","termid":"PATO:0001913"}


id: PBO:0031556
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_catalytic_activity","termid":"PBO:0031556"}


id: PR:O94272
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A gamma-aminobutyric acid receptor-associated protein-like 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy-related protein 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.24c","secondary_identifiers":["UniProtKB:O94272"],"synonyms":[{"name":"Spom972h-GABARAPL2","type":"exact"},{"name":"autophagy-related ubiquitin-like modifier atg8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94272"}


id: RO:0002506
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_related_to","termid":"RO:0002410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causal_relation_between_material_entities","termid":"RO:0002506"}


id: MONDO:0013401
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hereditary spastic paraplegia in which the cause of the disease is a mutation in the AP4E1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 51","secondary_identifiers":["UMLS:C3151056","NORD:1990","DOID:0110803","OMIM:613744","MEDGEN:462406","GARD:13737"],"synonyms":[{"name":"AP4E1 hereditary spastic paraplegia","type":"exact"},{"name":"CPSQ4","type":"exact"},{"name":"SPG51","type":"exact"},{"name":"Spastic Paraplegia 51","type":"exact"},{"name":"autosomal dominant spastic paraplegia 51","type":"exact"},{"name":"cerebral palsy, spastic quadriplegic, 4","type":"related"},{"name":"cerebral palsy, spastic quadriplegic, 4, formerly","type":"related"},{"name":"hereditary spastic paraplegia caused by mutation in AP4E1","type":"exact"},{"name":"hereditary spastic paraplegia type 51","type":"exact"},{"name":"spastic paraplegia 51, autosomal recessive","type":"related"},{"name":"spastic quadriplegic cerebral palsy 4","type":"exact"}],"termid":"MONDO:0013401","xrefs":{"Monarch":{"xref_id":"0013401"}}}


id: PBO:0028289
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cadmium_ion_import_into_vacuole","termid":"PBO:0028289"}


id: MONDO:0010264
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A X-linked condition characterized by underdevelopment of the adrenal gland and adrenal insufficiency caused by mutation(s) in the NR0B1 gene, resulting in decreased activity of the nuclear receptor protein DAX1, which may be associated with hypogonadotropic hypogonadism.","definition_xrefs":["NCIT:C123725"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"chronic primary adrenal insufficiency","termid":"MONDO:0015129"},{"relation_name":"is_a","term_name":"congenital hypogonadotropic hypogonadism","termid":"MONDO:0015770"},{"relation_name":"is_a","term_name":"alternating hemiplegia of childhood","termid":"MONDO:0016241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0700092"],"is_obsolete":false,"name":"X-linked adrenal hypoplasia congenita","secondary_identifiers":["NANDO:2200357","Orphanet:95702","SCTID:93235007","OMIM:300200","UMLS:C0342482","GARD:555","DOID:0080156","NANDO:1200403","MEDGEN:87442"],"synonyms":[{"name":"AHC","type":"broad"},{"name":"AHC with HHG","type":"related"},{"name":"AHC with isolated gonadotropin deficiency","type":"related"},{"name":"Addison disease, X-linked","type":"related"},{"name":"X-linked AHC","type":"related"},{"name":"X-linked adrenal hypoplasia congenita","type":"exact"},{"name":"X-linked congenital adrenal hypoplasia","type":"exact"},{"name":"adrenal hypoplasia congenita","type":"broad"},{"name":"adrenal hypoplasia, congenital","type":"related"},{"name":"adrenal hypoplasia, congenital, X-linked recessive","type":"exact"},{"name":"adrenal hypoplasia, congenital, with hypogonadotropic hypogonadism","type":"related"},{"name":"adrenal hypoplasia, congenital, with precocious puberty","type":"related"},{"name":"adrenal insufficiency, progressive, and hypogonadotropic hypogonadism","type":"related"},{"name":"congenital adrenal hypoplasia","type":"exact"},{"name":"cytomegalic adrenocortical hypoplasia","type":"related"},{"name":"cytomegalic congenital adrenal hypoplasia","type":"related"},{"name":"mineralocorticoid deficiency, isolated","type":"related"}],"termid":"MONDO:0010264","xrefs":{"Monarch":{"xref_id":"0010264"}}}


id: PBO:0014255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulinase pombe homologue 1","termid":"PBO:0014255"}


id: PBO:0077883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin polymerization promoting protein family member 3","termid":"PBO:0077883"}


id: FYECO:0000320
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which oleate was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ oleate","termid":"FYECO:0000320"}


id: GO:0032760
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tumor necrosis factor production.","definition_xrefs":["GO_REF:0000058","PMID:15560120","GOC:TermGenie","PMID:10891884"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tumor necrosis factor production","termid":"GO:0032680"},{"relation_name":"is_a","term_name":"positive regulation of tumor necrosis factor superfamily cytokine production","termid":"GO:1903557"},{"relation_name":"positively_regulates","term_name":"tumor necrosis factor production","termid":"GO:0032640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of tumor necrosis factor production","secondary_identifiers":["GO:1904469","GO:0042535"],"synonyms":[{"name":"activation of tumor necrosis factor production","type":"narrow"},{"name":"positive regulation of TNF production","type":"exact"},{"name":"positive regulation of TNF secretion","type":"narrow"},{"name":"positive regulation of TNF-alpha production","type":"exact"},{"name":"positive regulation of cachectin secretion","type":"narrow"},{"name":"positive regulation of tumor necrosis factor biosynthesis","type":"narrow"},{"name":"positive regulation of tumor necrosis factor biosynthetic process","type":"narrow"},{"name":"positive regulation of tumor necrosis factor formation","type":"narrow"},{"name":"positive regulation of tumor necrosis factor secretion","type":"narrow"},{"name":"positive regulation of tumor necrosis factor-alpha production","type":"exact"},{"name":"stimulation of tumor necrosis factor production","type":"narrow"},{"name":"up regulation of tumor necrosis factor production","type":"exact"},{"name":"up-regulation of tumor necrosis factor production","type":"exact"},{"name":"upregulation of tumor necrosis factor production","type":"exact"}],"termid":"GO:0032760"}


id: PBO:0049265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gasdermin D","termid":"PBO:0049265"}


id: PBO:0011111
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deletion library version 2. has incorrect strain","termid":"PBO:0011111"}


id: GO:0071654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of production of chemokine (C-C motif) ligand 1.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of chemokine production","termid":"GO:0032722"},{"relation_name":"is_a","term_name":"regulation of chemokine (C-C motif) ligand 1 production","termid":"GO:0071652"},{"relation_name":"positively_regulates","term_name":"chemokine (C-C motif) ligand 1 production","termid":"GO:0071610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of chemokine (C-C motif) ligand 1 production","synonyms":[{"name":"positive regulation of CCL1 production","type":"exact"},{"name":"positive regulation of T cell activation 3 production","type":"exact"},{"name":"positive regulation of TCA-3 production","type":"exact"}],"termid":"GO:0071654"}


id: GO:0045625
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of T-helper 1 cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T-helper 1 type immune response","termid":"GO:0002825"},{"relation_name":"is_a","term_name":"regulation of T-helper cell differentiation","termid":"GO:0045622"},{"relation_name":"regulates","term_name":"T-helper 1 cell differentiation","termid":"GO:0045063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T-helper 1 cell differentiation","synonyms":[{"name":"regulation of T-helper 1 cell development","type":"related"}],"termid":"GO:0045625"}


id: GO:0090606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which microorganisms produce an extracellular matrix and form multicellular aggregates at an air-liquid interface.","definition_xrefs":["GOC:ml"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single-species biofilm formation","termid":"GO:0044010"},{"relation_name":"is_a","term_name":"surface biofilm formation","termid":"GO:0090604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"single-species surface biofilm formation","secondary_identifiers":["GO:0032022"],"synonyms":[{"name":"multicellular pellicle formation","type":"related"}],"termid":"GO:0090606"}


id: PBO:0079957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP7 antisense RNA 1","termid":"PBO:0079957"}


id: PATO:0002340
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of being minutely hispid.","definition_xrefs":["PATOC:DD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hispid","termid":"PATO:0002339"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hispidulous","termid":"PATO:0002340"}


id: PBO:0047107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 156 member B","termid":"PBO:0047107"}


id: PBO:0024827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urease accessory protein UreD","termid":"PBO:0024827"}


id: SO:0000893
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing an epigenetic process where a gene is inactivated at transcriptional or translational level.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptionally_repressed","termid":"SO:0000126"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silenced","secondary_identifiers":["http://en.wikipedia.org/wiki/Silenced"],"termid":"SO:0000893"}


id: PBO:0013771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA m(1)G methyltransferase Trm10","termid":"PBO:0013771"}


id: FYPO:0006009
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain fewer actin cables than normal during cytokinesis.","definition_xrefs":["PMID:26941334","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin cables present in decreased numbers","termid":"FYPO:0006215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"actin cables present in decreased numbers during cytokinesis","synonyms":[{"name":"actin cables present in decreased numbers during cytokinesis during mitotic cell cycle","type":"related"},{"name":"actin cables present in decreased numbers during cytokinesis during vegetative growth","type":"exact"},{"name":"actin cables present in reduced numbers during cytokinesis","type":"exact"},{"name":"decreased level of actin cables during cytokinesis","type":"related"},{"name":"fewer actin cables present during cytokinesis","type":"exact"},{"name":"formin-nucleated actin cables present in decreased numbers during cytokinesis","type":"exact"}],"termid":"FYPO:0006009"}


id: MONDO:0017125
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete oculofaciocardiodental syndrome (obsolete MONDO:0017125)","termid":"MONDO:0017125","xrefs":{"Monarch":{"xref_id":"0017125"}}}


id: PR:Q9US37
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1039.04 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9US37"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C1039.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1039.04","synonyms":[{"name":"Spom972h-SPAC1039.04","type":"exact"}],"termid":"PR:Q9US37"}


id: PBO:0073690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIX homeobox 3","termid":"PBO:0073690"}


id: GO:0003008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"system process","synonyms":[{"name":"organ system process","type":"exact"}],"termid":"GO:0003008"}


id: PBO:0055041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2456","termid":"PBO:0055041"}


id: GO:0051200
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a prosthetic group.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of prosthetic group metabolic process (obsolete GO:0051200)","synonyms":[{"name":"activation of prosthetic group metabolic process","type":"narrow"},{"name":"positive regulation of coenzyme and prosthetic group metabolic process","type":"broad"},{"name":"positive regulation of coenzyme and prosthetic group metabolism","type":"broad"},{"name":"positive regulation of prosthetic group metabolism","type":"exact"},{"name":"stimulation of prosthetic group metabolic process","type":"narrow"},{"name":"up regulation of prosthetic group metabolic process","type":"exact"},{"name":"up-regulation of prosthetic group metabolic process","type":"exact"},{"name":"upregulation of prosthetic group metabolic process","type":"exact"}],"termid":"GO:0051200"}


id: GO:0072681
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a thymocyte through distinct intrathymic niches (e.g. medulla, cortex), where it receives a unique set of developmental cues required for T-cell development, dependent on fibronectin in the extracellular matrix.","definition_xrefs":["GOC:BHF","PMID:20856819","GOC:mah","CL:0000893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix-dependent thymocyte migration","termid":"GO:0072680"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fibronectin-dependent thymocyte migration","synonyms":[{"name":"fibronectin-dependent immature T cell migration","type":"related"},{"name":"fibronectin-dependent immature T lymphocyte migration","type":"related"},{"name":"fibronectin-dependent immature T-cell migration","type":"related"},{"name":"fibronectin-dependent immature T-lymphocyte migration","type":"related"},{"name":"fibronectin-dependent thymic lymphocyte migration","type":"exact"}],"termid":"GO:0072681"}


id: GO:0060598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the terminal end of a mammary duct bifurcates.","definition_xrefs":["PMID:17120154","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dichotomous subdivision of an epithelial terminal unit","termid":"GO:0060600"},{"relation_name":"part_of","term_name":"branch elongation involved in mammary gland duct branching","termid":"GO:0060751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis","synonyms":[{"name":"primary mammary duct branching","type":"exact"}],"termid":"GO:0060598"}


id: PBO:0088966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-L ortholog Fta1","termid":"PBO:0088966"}


id: PBO:0046574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 16","termid":"PBO:0046574"}


id: GO:0071359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to dsRNA","termid":"GO:0043331"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to dsRNA","synonyms":[{"name":"cellular response to double-stranded RNA","type":"exact"}],"termid":"GO:0071359"}


id: PBO:0015700
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kcat/Km 2.3x10^4 min-1 M-1","termid":"PBO:0015700"}


id: MONDO:0003272
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"malignant mixed neoplasm","termid":"MONDO:0005853"},{"relation_name":"is_a","term_name":"mixed neoplasm","termid":"MONDO:0021043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mixed epithelial stromal tumor","secondary_identifiers":["DOID:5088","NCIT:C37265"],"synonyms":[{"name":"mixed epithelial stromal tumor","type":"exact"}],"termid":"MONDO:0003272","xrefs":{"Monarch":{"xref_id":"0003272"}}}


id: FYPO:0001097
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to amitrole. Cells stop growing (and may die) at a concentration of amitrole that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to amitrole","synonyms":[{"name":"hypersensitive to amitrole","type":"exact"},{"name":"sensitive to 3-AT","type":"exact"},{"name":"sensitive to 3-amino-1,2,4-triazole","type":"exact"},{"name":"sensitive to 3-aminotriazole","type":"exact"},{"name":"sensitive to amitrole during mitotic cell cycle","type":"related"},{"name":"sensitive to amitrole during vegetative growth","type":"exact"}],"termid":"FYPO:0001097"}


id: GO:0071915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of lysine group to a lysine residue in a protein, producing N6-(lysyl)-L-lysine. This modification is observed in, and is probably unique to, translation elongation factor P (EF-P).","definition_xrefs":["GOC:imk","GOC:jsg","PMID:20729861"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-lysine lysylation (obsolete GO:0071915)","synonyms":[{"name":"protein amino acid lysylation","type":"exact"}],"termid":"GO:0071915"}


id: PBO:0108916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAG3 cohesin complex component like 2 (pseudogene)","termid":"PBO:0108916"}


id: PBO:0090066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snRNP binding protein Sgt1","termid":"PBO:0090066"}


id: MONDO:0010403
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndromic genetic hearing loss is characterized by congenital nerve deafness and piebaldness with no ocular albinism. It has been described in one large pedigree. Transmission is X-linked with affected males presenting with profound sensorineural deafness and severe pigmentary abnormalities of the skin, and carrier females presenting with variable hearing impairment without any pigmentary changes. The causative gene has been mapped to Xq26.3-q27.1.","definition_xrefs":["Orphanet:998"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypopigmentation of the skin","termid":"MONDO:0019290"},{"relation_name":"is_a","term_name":"albinism","termid":"MONDO:0043209"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005093","MONDO:0004736"],"is_obsolete":false,"name":"albinism-hearing loss syndrome","secondary_identifiers":["UMLS:C1845068","MEDGEN:375573","GARD:589","MESH:C537042","SCTID:722285005","SCTID:74320008","OMIM:300700"],"synonyms":[{"name":"ADFN","type":"related"},{"name":"ALDS","type":"related"},{"name":"Woolf syndrome","type":"related"},{"name":"Woolf's syndrome","type":"exact"},{"name":"Ziprkowski–Margolis syndrome","type":"exact"},{"name":"albinism deafness syndrome","type":"narrow"},{"name":"albinism-deafness syndrome","type":"narrow"}],"termid":"MONDO:0010403","xrefs":{"Monarch":{"xref_id":"0010403"}}}


id: PBO:0040290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase Na+/K+ transporting subunit beta 3 pseudogene 1","termid":"PBO:0040290"}


id: GO:1901126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of candicidin.","definition_xrefs":["GOC:yaf","GOC:TermGenie","UniPathway:UPA00101"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"candicidin metabolic process","termid":"GO:1901125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"candicidin catabolic process","synonyms":[{"name":"candicidin breakdown","type":"exact"},{"name":"candicidin catabolism","type":"exact"},{"name":"candicidin degradation","type":"exact"}],"termid":"GO:1901126"}


id: PBO:0068092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 399","termid":"PBO:0068092"}


id: PBO:0042147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 5","termid":"PBO:0042147"}


id: PBO:0063871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class C","termid":"PBO:0063871"}


id: PBO:0047534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FYVE, RhoGEF and PH domain containing 6","termid":"PBO:0047534"}


id: FYPO:0004121
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the import of protein into the nucleus is normal (i.e. indistinguishable from wild type). Import of all proteins or a specific protein may be assayed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear import","termid":"FYPO:0000516"},{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"},{"relation_name":"is_a","term_name":"normal intracellular protein transport during vegetative growth","termid":"FYPO:0005397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0000138","FYPO:0001312"],"is_obsolete":false,"name":"normal protein import into nucleus during vegetative growth","synonyms":[{"name":"normal nucleocytoplasmic protein import during vegetative growth","type":"related"},{"name":"normal protein import into nucleus during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004121"}


id: GO:0004619
data:
  {"annotated_genes":["SJAG_02009"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[60041],"is_not":false,"summary":null,"term":"GO:0004619"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate.","definition_xrefs":["RHEA:15901"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular phosphotransferase activity","termid":"GO:0016868"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02009":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"phosphoglycerate mutase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["Reactome:R-HSA-71445","Reactome:R-HSA-71654","KEGG_REACTION:R01516"],"synonyms":[{"name":"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity","type":"narrow"},{"name":"2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity","type":"narrow"},{"name":"D-phosphoglycerate 2,3-phosphomutase activity","type":"related"},{"name":"PGA mutase activity","type":"related"},{"name":"PGAM activity","type":"related"},{"name":"PGM","type":"exact"},{"name":"phosphoglycerate phosphomutase activity","type":"related"},{"name":"phosphoglyceromutase activity","type":"related"}],"termid":"GO:0004619","terms_by_termid":{"GO:0004619":null}}


id: GO:0014872
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process resulting in the physical partitioning and separation of a myoblast into daughter cells. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["CL:0000056","GOC:ef","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell division","termid":"GO:0051301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast division","termid":"GO:0014872"}


id: FYECO:0000009
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Any experimental condition pertaining to the medium in which cells are grown.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fission yeast phenotype condition","termid":"FYECO:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grouping growth medium","termid":"FYECO:0000009"}


id: PBO:0051332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2-28","termid":"PBO:0051332"}


id: PBO:0085170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Oleate-activated transcription factor; subunit of a heterodimeric complex with Pip2p, which binds to oleate-response elements (ORE) in the promoter of genes involved in beta-oxidation of fatty acids, peroxisome organization and biogenesis, activating transcription in the presence of oleate; regulates chromatin silencing at telomeres; involved in diauxic shift; OAF1 has a paralog, PIP2, that arose from the whole genome duplication","termid":"PBO:0085170"}


id: PBO:0088300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha/Beta hydrolase fold","termid":"PBO:0088300"}


id: PBO:0090790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome assembly ATPase Rix7","termid":"PBO:0090790"}


id: GO:0042547
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events resulting in chemical or structural changes to existing cell walls and contribute to multidimensional cell growth.","definition_xrefs":["GOC:dph","GOC:jl","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall modification","termid":"GO:0042545"},{"relation_name":"part_of","term_name":"multidimensional cell growth","termid":"GO:0009825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0071554","GO:0008150"],"is_obsolete":false,"name":"cell wall modification involved in multidimensional cell growth","synonyms":[{"name":"cell wall modification during cell expansion","type":"exact"},{"name":"cell wall modification during multidimensional cell growth","type":"related"}],"termid":"GO:0042547"}


id: PBO:0029716
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_DNA_replication_during_vegetative_growth","termid":"PBO:0029716"}


id: PBO:0069651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 928, pseudogene","termid":"PBO:0069651"}


id: PBO:0068505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 94, pseudogene","termid":"PBO:0068505"}


id: PBO:0000653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication factor C complex subunit Rfc4 (predicted)","termid":"PBO:0000653"}


id: MONDO:0019041
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic inherited tumor (obsolete MONDO:0019041)","secondary_identifiers":["Orphanet:68336"],"synonyms":[{"name":"rare genetic tumor","type":"related"}],"termid":"MONDO:0019041","xrefs":{"Monarch":{"xref_id":"0019041"}}}


id: MONDO:0016895
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete partial monosomy of the short arm of chromosome 17 (obsolete MONDO:0016895)","termid":"MONDO:0016895","xrefs":{"Monarch":{"xref_id":"0016895"}}}


id: PBO:0039955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 2","termid":"PBO:0039955"}


id: MONDO:1010549
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Diprosopus that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diprosopus, non-human animal","termid":"MONDO:1010045"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diprosopus, sheep","secondary_identifiers":["OMIA:000290-9940"],"termid":"MONDO:1010549","xrefs":{"Monarch":{"xref_id":"1010549"}}}


id: PBO:0040811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BICD cargo adaptor 2","termid":"PBO:0040811"}


id: PR:O94420
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1620.13 gene.","definition_xrefs":["UniProtKB:O94420","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatase C1620.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1620.13","synonyms":[{"name":"Spom972h-SPCC1620.13","type":"exact"}],"termid":"PR:O94420"}


id: FYPO:0006830
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to replete levels of zinc ion is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah","PMID:29529046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal RNA level during cellular response to replete zinc","synonyms":[{"name":"normal RNA accumulation during cellular response to replete zinc","type":"related"},{"name":"normal RNA level during cellular response to replete zinc during mitotic cell cycle","type":"related"},{"name":"normal RNA level during cellular response to replete zinc during vegetative growth","type":"exact"},{"name":"normal RNA level during replete zinc","type":"exact"},{"name":"normal RNA level in response to replete zinc","type":"exact"},{"name":"normal mRNA level during cellular response to replete zinc","type":"narrow"},{"name":"normal transcript level during cellular response to replete zinc","type":"exact"}],"termid":"FYPO:0006830"}


id: MONDO:0021004
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease characterized by the presence of brachydactyly, including syndromic and non-syndromic forms.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly","secondary_identifiers":["HP:0001156","MEDGEN:67454","MESH:D059327","UMLS:C0221357","SCTID:43476002","DOID:0050581","icd11.foundation:598200019"],"synonyms":[{"name":"brachydactyly","type":"exact"},{"name":"brachydactyly (disease)","type":"exact"}],"termid":"MONDO:0021004","xrefs":{"Monarch":{"xref_id":"0021004"}}}


id: PBO:0002240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJ domain protein Caj1/Djp1 type (predicted)","termid":"PBO:0002240"}


id: PBO:0066610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rhox homeobox family member 1 pseudogene 1","termid":"PBO:0066610"}


id: MONDO:0021636
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A glial tumor of the brain or spinal cord showing astrocytic differentiation. It includes the following clinicopathological entities: pilocytic astrocytoma, diffuse astrocytoma, anaplastic astrocytoma, pleomorphic xanthoastrocytoma, subependymal giant cell astrocytoma, and glioblastoma.","definition_xrefs":["NCIT:C6958"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glioma","termid":"MONDO:0021042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"astrocytic tumor","secondary_identifiers":["MedDRA:10003571","DOID:3069","GARD:12928","Orphanet:94"],"synonyms":[{"name":"astrocytic neoplasm","type":"exact"},{"name":"astrocytic tumor","type":"exact"},{"name":"astrocytoma","type":"narrow"},{"name":"astrocytoma of brain","type":"exact"},{"name":"astrocytoma of cerebrum","type":"narrow"},{"name":"astrocytoma, no ICD-O subtype","type":"exact"},{"name":"astroglioma","type":"exact"}],"termid":"MONDO:0021636","xrefs":{"Monarch":{"xref_id":"0021636"}}}


id: PBO:0065838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB9A, member RAS oncogene family pseudogene 3","termid":"PBO:0065838"}


id: PBO:0058745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6869","termid":"PBO:0058745"}


id: PBO:0002090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGEF Scd1","termid":"PBO:0002090"}


id: GO:1904587
data:
  {"annotated_genes":["SJAG_03032","SJAG_01858"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95465,93315],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097466"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glycoprotein stimulus.","definition_xrefs":["PMID:14597422","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01858":null,"SJAG_03032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to glycoprotein","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"response to glycoproteins","type":"exact"}],"termid":"GO:1904587","terms_by_termid":{"GO:0097466":null}}


id: PBO:0080200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VENTX pseudogene 8","termid":"PBO:0080200"}


id: MONDO:0010280
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"ptosis, hereditary congenital, 1","termid":"MONDO:0008340"},{"relation_name":"is_a","term_name":"ptosis","termid":"MONDO:0000728"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"ptosis, hereditary congenital 2","secondary_identifiers":["MESH:C564553","MEDGEN:337515","OMIM:300245","GARD:18163","UMLS:C1846128"],"synonyms":[{"name":"Ptos2","type":"related"},{"name":"ptosis, X-linked","type":"related"},{"name":"ptosis, hereditary congenital 2","type":"exact"},{"name":"ptosis, hereditary congenital 2, X-linked dominant","type":"exact"},{"name":"ptosis, hereditary congenital type 2","type":"exact"}],"termid":"MONDO:0010280","xrefs":{"Monarch":{"xref_id":"0010280"}}}


id: GO:0070081
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A clathrin-sculpted lipid bilayer membrane-enclosed vesicle after clathrin release and containing monoamines.","definition_xrefs":["GOC:mg2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport vesicle","termid":"GO:0030133"},{"relation_name":"is_a","term_name":"clathrin-sculpted vesicle","termid":"GO:0060198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"clathrin-sculpted monoamine transport vesicle","synonyms":[{"name":"clathrin sculpted monoamine constitutive secretory pathway transport vesicle","type":"exact"},{"name":"clathrin sculpted monoamine transport vesicle","type":"exact"}],"termid":"GO:0070081"}


id: GO:0110152
data:
  {"annotated_genes":["SJAG_02374"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91466],"is_not":false,"summary":null,"term":"GO:0110152"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 5'-end NAD+-phospho-ribonucleoside in mRNA + H2O = a 5'-end phospho-ribonucleoside in mRNA + H+ + NAD+.","definition_xrefs":["PMID:28283058","RHEA:60880","GOC:sp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides","termid":"GO:0016818"},{"relation_name":"is_a","term_name":"catalytic activity, acting on RNA","termid":"GO:0140098"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02374":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0140098","GO:0003824"],"is_obsolete":false,"name":"RNA NAD+-cap (NAD+-forming) hydrolase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"RNA NAD-cap (NAD-forming) hydrolase activity","type":"exact"}],"termid":"GO:0110152","terms_by_termid":{"GO:0110152":null}}


id: GO:1902065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-glutamate stimulus.","definition_xrefs":["GOC:TermGenie","PMID:23574009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to amino acid","termid":"GO:0043200"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to L-glutamate","termid":"GO:1902065"}


id: PBO:0000227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Par A family ATPase/WD repeat iron cluster assembly fusion protein (predicted)","termid":"PBO:0000227"}


id: PBO:0051198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3/OR16-16 (pseudogene)","termid":"PBO:0051198"}


id: MONDO:0019414
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by Brain anomalies, severe mental Retardation, Ectodermal dysplasia, Skeletal deformities (vertebral anomalies, scoliosis, polydactyly), Ear/eye anomalies (maldevelopment, small optic nerves, low set and large ears with hearing loss) and Kidney dysplasia/hypoplasia (giving the acronym BRESEK syndrome).","definition_xrefs":["Orphanet:85284"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"excluded_subClassOf","term_name":"IFAP syndrome 1, with or without BRESHECK syndrome","termid":"MONDO:0100213"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRESEK syndrome","secondary_identifiers":["UMLS:C3502469","MESH:C564519","SCTID:717945001","MEDGEN:502868","GARD:16746"],"synonyms":[{"name":"BRESHECK syndrome","type":"exact"}],"termid":"MONDO:0019414","xrefs":{"Monarch":{"xref_id":"0019414"}}}


id: PBO:0057849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3160-2","termid":"PBO:0057849"}


id: GO:0070898
data:
  {"annotated_genes":["SJAG_03007","SJAG_03120"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71566,102821],"is_not":false,"summary":null,"term":"GO:0070898"}]},"cv_name":"biological_process","definition":"The formation of a large multiprotein-DNA complex that self-assembles on a tRNA gene through the sequential recruitment of the general initiation factors that compose the preinitiation complex (PIC), (which includes BDP1, BRF1, TBP, TFIIIC in human). The PIC engages RNA polymerase III on its DNA template strand and sparks polymerization of the first few RNA nucleotides.","definition_xrefs":["GOC:txnOH","PMID:12381659","PMID:11387215"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription preinitiation complex assembly","termid":"GO:0070897"},{"relation_name":"part_of","term_name":"transcription initiation at RNA polymerase III promoter","termid":"GO:0006384"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03007":null,"SJAG_03120":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0010467","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"RNA polymerase III preinitiation complex assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0000999","GO:0001020","GO:0001021","GO:0001043"],"synonyms":[{"name":"RNA polymerase III hybrid type promoter transcriptional preinitiation complex assembly","type":"narrow"},{"name":"RNA polymerase III transcription PIC biosynthesis","type":"exact"},{"name":"RNA polymerase III transcription PIC formation","type":"exact"},{"name":"RNA polymerase III transcriptional preinitiation complex assembly","type":"exact"},{"name":"RNA polymerase III transcriptional preinitiation complex formation","type":"exact"},{"name":"RNA polymerase III type 1 promoter transcriptional preinitiation complex assembly","type":"narrow"},{"name":"RNA polymerase III type 2 promoter transcriptional preinitiation complex assembly","type":"narrow"},{"name":"RNA polymerase III type 3 promoter transcriptional preinitiation complex assembly","type":"narrow"}],"termid":"GO:0070898","terms_by_termid":{"GO:0070898":null}}


id: PBO:0082873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cortical ER protein involved in ER-plasma membrane tethering; one of 6 proteins (Ist2p, Scs2p, Scs22p, Tcb1p, Tcb2p, Tcb3p) that connect ER to the plasma membrane (PM) and regulate PM phosphatidylinositol-4-phosphate (PI4P) levels by controlling access of Sac1p phosphatase to its substrate PI4P in the PM; localized to the bud via specific mRNA transport; non-tagged protein detected in a phosphorylated state in mitochondria; C-termini of Tcb1p, Tcb2p and Tcb3p interact","termid":"PBO:0082873"}


id: PBO:0074914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 84","termid":"PBO:0074914"}


id: PBO:0073622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sialic acid binding Ig like lectin 8","termid":"PBO:0073622"}


id: PATO:0000378
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000378 absolute frequency value (obsolete PATO:0000378)","termid":"PATO:0000378"}


id: FYPO:0006754
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which promoter-enhancer looping occurs to a lower extent than normal when the cell is subject to glucose starvation. Promoter-enhancer looping is mediated by interactions between proteins bound to DNA at promoters and at enhancers, or by a single protein binding at both sites.","definition_xrefs":["PomBase:mah","PMID:28934464"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome organization","termid":"FYPO:0000641"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000641","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased promoter-enhancer looping during glucose starvation","synonyms":[{"name":"decreased promoter-enhancer looping during glucose depletion","type":"exact"},{"name":"decreased promoter-enhancer looping during glucose deprivation","type":"exact"}],"termid":"FYPO:0006754"}


id: PBO:0091178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial methionine-tRNA ligase Msm1","termid":"PBO:0091178"}


id: FYPO:0000042
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell requires sulfite in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for sulfite","synonyms":[{"name":"growth auxotrophic for sulfite during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for sulfite during vegetative growth","type":"exact"},{"name":"growth auxotrophic for sulphite","type":"exact"},{"name":"sulfite auxotrophy","type":"exact"}],"termid":"FYPO:0000042"}


id: PBO:0071145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L22 pseudogene 8","termid":"PBO:0071145"}


id: PBO:0061217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein 8 pseudogene 1","termid":"PBO:0061217"}


id: PBO:0109840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canto_allele_systematic_id","termid":"PBO:0109840"}


id: GO:0016020
data:
  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