# terms

id: MONDO:0002856
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rhabdomyosarcoma that is located in the gallbladder.","direct_ancestors":[{"relation_name":"is_a","term_name":"gallbladder sarcoma","termid":"MONDO:0002857"},{"relation_name":"is_a","term_name":"rhabdomyosarcoma","termid":"MONDO:0005212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515","MONDO:0004992"],"is_obsolete":false,"name":"gallbladder rhabdomyosarcoma","secondary_identifiers":["UMLS:C1333756","MEDGEN:234294","DOID:4057","NCIT:C5839"],"synonyms":[{"name":"gall bladder rhabdomyosarcoma","type":"exact"},{"name":"gall bladder rhabdomyosarcoma (disease)","type":"exact"},{"name":"gallbladder rhabdomyosarcoma","type":"exact"},{"name":"rhabdomyosarcoma (disease) of gall bladder","type":"exact"},{"name":"rhabdomyosarcoma of gallbladder","type":"exact"},{"name":"rhabdomyosarcoma of the gallbladder","type":"exact"}],"termid":"MONDO:0002856","xrefs":{"Monarch":{"xref_id":"0002856"}}}


id: PBO:0063948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 inhibitor and LY6/PLAUR domain containing","termid":"PBO:0063948"}


id: GO:0000033
data:
  {"annotated_genes":["SJAG_04952","SJAG_03056"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052925"},{"annotations":[60911],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004378"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1->3) linkage.","definition_xrefs":["PMID:10521541","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosyltransferase activity","termid":"GO:0000030"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03056":null,"SJAG_04952":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"alpha-1,3-mannosyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-4720473","Reactome:R-HSA-4549368","Reactome:R-HSA-446188","Reactome:R-HSA-446208"],"termid":"GO:0000033","terms_by_termid":{"GO:0004378":null,"GO:0052925":null}}


id: PBO:0061231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP2 nucleolar protein","termid":"PBO:0061231"}


id: PBO:0044678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA damage inducible 1 homolog 2","termid":"PBO:0044678"}


id: PBO:0072658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retrotransposon Gag like 10","termid":"PBO:0072658"}


id: GO:0030767
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxyanthranilate + S-adenosyl-L-methionine = 3-hydroxy-4-methylanthranilate + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["EC:2.1.1.97","RHEA:17833"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"3-hydroxyanthranilate 4-C-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R02667","MetaCyc:2.1.1.97-RXN"],"synonyms":[{"name":"3-hydroxyanthranilate 4-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:3-hydroxyanthranilate 4-C-methyltransferase activity","type":"related"}],"termid":"GO:0030767"}


id: MONDO:1012917
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Alzheimer disease that occurs in pigs due to a mutation in the PSEN1 gene created by genetic engineering or gene editing.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"Alzheimer disease, non-human animal","termid":"MONDO:1011443"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alzheimer disease, PSEN1-related, pig","secondary_identifiers":["OMIA:002493-9823"],"termid":"MONDO:1012917","xrefs":{"Monarch":{"xref_id":"1012917"}}}


id: GO:1901737
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (R)-mevalonic acid.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"},{"relation_name":"is_a","term_name":"(R)-mevalonic acid metabolic process","termid":"GO:1901735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"(R)-mevalonic acid biosynthetic process","synonyms":[{"name":"(R)-mevalonate anabolism","type":"exact"},{"name":"(R)-mevalonate biosynthesis","type":"exact"},{"name":"(R)-mevalonate synthesis","type":"exact"},{"name":"(R)-mevalonic acid anabolism","type":"exact"},{"name":"(R)-mevalonic acid biosynthesis","type":"exact"},{"name":"(R)-mevalonic acid formation","type":"exact"},{"name":"(R)-mevalonic acid synthesis","type":"exact"}],"termid":"GO:1901737"}


id: PBO:0080882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YPEL5 pseudogene 2","termid":"PBO:0080882"}


id: GO:0006114
data:
  {"annotated_genes":["SJAG_01012","SJAG_00409"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94316,106820],"is_not":false,"summary":null,"term":"GO:0006114"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.","definition_xrefs":["GOC:ai","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerol metabolic process","termid":"GO:0006071"},{"relation_name":"is_a","term_name":"alditol biosynthetic process","termid":"GO:0019401"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_01012":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"glycerol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glycerol anabolism","type":"exact"},{"name":"glycerol biosynthesis","type":"exact"},{"name":"glycerol formation","type":"exact"},{"name":"glycerol synthesis","type":"exact"}],"termid":"GO:0006114","terms_by_termid":{"GO:0006114":null}}


id: GO:0006761
data:
  {"annotated_genes":["SJAG_00529"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68824],"is_not":false,"summary":null,"term":"GO:0006761"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dihydrofolate, the dihydroxylated derivative of folate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"folic acid-containing compound biosynthetic process","termid":"GO:0009396"},{"relation_name":"is_a","term_name":"dicarboxylic acid biosynthetic process","termid":"GO:0043650"},{"relation_name":"is_a","term_name":"dihydrofolate metabolic process","termid":"GO:0046452"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00529":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0042559"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0042559"],"is_obsolete":false,"name":"dihydrofolate biosynthetic process","references_by_uniquename":{"GO_REF:0000108":null},"synonyms":[{"name":"7,8-dihydrofolate biosynthesis","type":"exact"},{"name":"7,8-dihydrofolate biosynthetic process","type":"exact"},{"name":"dihydrofolate anabolism","type":"exact"},{"name":"dihydrofolate biosynthesis","type":"exact"},{"name":"dihydrofolate formation","type":"exact"},{"name":"dihydrofolate synthesis","type":"exact"}],"termid":"GO:0006761","terms_by_termid":{"GO:0006761":null}}


id: PBO:0072163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 40","termid":"PBO:0072163"}


id: GO:0036255
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylamine stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to amine","termid":"GO:0014075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to methylamine","termid":"GO:0036255"}


id: GO:0032562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to dAMP, deoxyadenosine monophosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenyl deoxyribonucleotide binding","termid":"GO:0032558"},{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"dAMP binding","termid":"GO:0032562"}


id: GO:0044817
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The production of hydrogen which results from the dissociation by light of water into molecular hydrogen and oxygen. This process is observed in cyanobacteria and microalgae.","definition_xrefs":["PMID:20692761","GOC:mengo_curators","PMID:20395274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrogen biosynthetic process","termid":"GO:1902422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hydrogen generation via biophotolysis","synonyms":[{"name":"hydrogen biosynthesis via biophotolysis","type":"exact"}],"termid":"GO:0044817"}


id: MONDO:0031001
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitreoretinopathy with phalangeal epiphyseal dysplasia","secondary_identifiers":["OMIM:619248","UMLS:C1852989","MEDGEN:343940"],"synonyms":[{"name":"VPED","type":"exact"}],"termid":"MONDO:0031001","xrefs":{"Monarch":{"xref_id":"0031001"}}}


id: GO:0047864
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N,N-dimethylaniline N-oxide = N-methylaniline + formaldehyde.","definition_xrefs":["EC:4.1.2.24","RHEA:19321"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"dimethylaniline-N-oxide aldolase activity","secondary_identifiers":["MetaCyc:DIMETHYLANILINE-N-OXIDE-ALDOLASE-RXN","KEGG_REACTION:R03345"],"synonyms":[{"name":"N,N-dimethylaniline-N-oxide formaldehyde-lyase (N-methylaniline-forming)","type":"related"},{"name":"N,N-dimethylaniline-N-oxide formaldehyde-lyase activity","type":"related"},{"name":"microsomal N-oxide dealkylase activity","type":"related"},{"name":"microsomal oxidase II","type":"related"}],"termid":"GO:0047864"}


id: MONDO:0016848
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Juvenile temporal arteritis is a rare form of vasculitis, a group of conditions that cause inflammation of the blood vessels. Unlike the classic form of temporal arteritis, this condition is generally diagnosed in late childhood or early adulthood and only affects the temporal arteries (located at the lower sides of the skull, directly underneath the temple). Affected people often have no signs or symptoms aside from a painless nodule or lump in the temporal region. The exact underlying cause of the condition is unknown. It generally occurs sporadically in people with no family history of the condition. Juvenile temporal arteritis is often treated with surgical excision and rarely recurs.","direct_ancestors":[{"relation_name":"is_a","term_name":"arteritis","termid":"MONDO:0043494"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"juvenile temporal arteritis","secondary_identifiers":["Orphanet:26137","GARD:3068","MEDGEN:155583","icd11.foundation:135739104","SCTID:722020006","UMLS:C0751547"],"synonyms":[{"name":"JGCA","type":"related"},{"name":"JPMR","type":"related"},{"name":"JTA","type":"exact"},{"name":"juvenile cranial arteritis","type":"related"},{"name":"juvenile giant cell arteritis","type":"related"},{"name":"juvenile polymyalgia rheumatica","type":"related"},{"name":"non-giant cell granulomatous temporal arteritis with eosinophilia","type":"exact"}],"termid":"MONDO:0016848","xrefs":{"Monarch":{"xref_id":"0016848"}}}


id: GO:0036333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any biological process involved in the maintenance of the steady-state number of hepatocytes within a population of cells. Hepatocytes are specialized epithelial cells of the liver that are organized into interconnected plates called lobules.","definition_xrefs":["CL:0000182","GOC:nhn","PMID:19878874"],"direct_ancestors":[{"relation_name":"is_a","term_name":"homeostasis of number of cells","termid":"GO:0048872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hepatocyte homeostasis","termid":"GO:0036333"}


id: PBO:0079599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 E3","termid":"PBO:0079599"}


id: PBO:0043302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain containing 19A","termid":"PBO:0043302"}


id: FYPO:0000492
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitochondrial genome maintenance is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitochondrial genome maintenance","termid":"FYPO:0000490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased mitochondrial genome maintenance","synonyms":[{"name":"decreased mitochondrial genome maintenance during mitotic cell cycle","type":"related"},{"name":"decreased mitochondrial genome maintenance during vegetative growth","type":"exact"},{"name":"mitochondrial genome maintenance: decreased","type":"related"},{"name":"reduced mitochondrial genome maintenance","type":"exact"}],"termid":"FYPO:0000492"}


id: GO:0036260
data:
  {"annotated_genes":["SJAG_01713","SJAG_01724","SJAG_04527","SJAG_03901","SJAG_04034","SJAG_04488"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75332],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036261"},{"annotations":[72528,108008,75891,68999],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006370"},{"annotations":[102487],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106410"},{"annotations":[59776],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0106005"}]},"cv_name":"biological_process","definition":"The sequence of enzymatic reactions by which a cap structure is added to the 5' end of nascent RNA polymerase transcripts. Examples of RNA capping include 7-methyl-G caps found on all RNA polymerase II transcripts and nucleotide-containing cofactor caps, such as NAD(H) or FAD, found on bacterial trancripts.","definition_xrefs":["PMID:18775984","PMID:29681497","GOC:mah","GOC:bf","PMID:30353673","PMID:27383794","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA 5'-end processing","termid":"GO:0000966"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01713":null,"SJAG_01724":null,"SJAG_03901":null,"SJAG_04034":null,"SJAG_04488":null,"SJAG_04527":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"RNA capping","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:0036260","terms_by_termid":{"GO:0006370":null,"GO:0036261":null,"GO:0106005":null,"GO:0106410":null}}


id: MONDO:0008371
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A pigmentation disease characterized by a reticulate pattern of abnormally dark skin coloring, particularly in the body's folds and creases.","definition_xrefs":["DOID:0060256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reticulate pigment disorder","termid":"MONDO:0000118"},{"relation_name":"is_a","term_name":"disorder of fucoglycosan synthesis","termid":"MONDO:0017747"},{"relation_name":"is_a","term_name":"hyperpigmentation of the skin","termid":"MONDO:0019289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005066","MONDO:0024322"],"is_obsolete":false,"name":"Dowling-Degos disease","secondary_identifiers":["icd11.foundation:15123132","MedDRA:10068651","GARD:9775","MESH:C562924","MEDGEN:811363","Orphanet:79145","SCTID:239133004","UMLS:C3714534"],"synonyms":[{"name":"DDD1","type":"related"},{"name":"Dowling-Degos Kitamura disease","type":"related"},{"name":"Dowling-Degos disease 1","type":"related"},{"name":"Dowling-Degos disease type 1","type":"exact"},{"name":"dark dot disease","type":"exact"},{"name":"reticular pigment anomaly of flexures","type":"exact"}],"termid":"MONDO:0008371","xrefs":{"Monarch":{"xref_id":"0008371"}}}


id: PBO:0074278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLIRP. pseudogene 2","termid":"PBO:0074278"}


id: FYPO:0007187
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any heme measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular heme level","synonyms":[{"name":"decreased cellular haem level","type":"exact"},{"name":"decreased cellular heme level during mitotic cell cycle","type":"related"},{"name":"decreased cellular heme level during vegetative growth","type":"exact"},{"name":"reduced cellular heme level","type":"exact"}],"termid":"FYPO:0007187"}


id: GO:0046109
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of uridine, uracil riboside, a ribonucleoside very widely distributed but occurring almost entirely as phosphoric esters in ribonucleotides and ribonucleic acids.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uridine metabolic process","termid":"GO:0046108"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside biosynthetic process","termid":"GO:0046132"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"uridine biosynthetic process","synonyms":[{"name":"uridine anabolism","type":"exact"},{"name":"uridine biosynthesis","type":"exact"},{"name":"uridine formation","type":"exact"},{"name":"uridine synthesis","type":"exact"}],"termid":"GO:0046109"}


id: MONDO:0020600
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute and painful inflammatory process that affects the pharynx. It is usually caused by viruses and less often bacteria. Signs and symptoms include discomfort on swallowing, low-grade fever, headache, and earache.","definition_xrefs":["NCIT:C34355"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pharyngitis","termid":"MONDO:0002258"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute pharyngitis","secondary_identifiers":["icd11.foundation:1791890273","SCTID:363746003","EFO:0009657","MEDGEN:114","UMLS:C0001344"],"synonyms":[{"name":"acute pharyngitis","type":"exact"},{"name":"pharyngitis, acute","type":"exact"}],"termid":"MONDO:0020600","xrefs":{"Monarch":{"xref_id":"0020600"}}}


id: GO:1900797
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cordyol C.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound metabolic process","termid":"GO:0009712"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"cordyol C metabolic process","synonyms":[{"name":"cordyol C metabolism","type":"exact"}],"termid":"GO:1900797"}


id: PBO:0071761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 8","termid":"PBO:0071761"}


id: MONDO:0003707
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from the common bile duct distal to the insertion of the cystic duct.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrahepatic bile duct carcinoma","termid":"MONDO:0003090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"distal biliary tract carcinoma","secondary_identifiers":["UMLS:C1333308","DOID:5923","MEDGEN:232133","NCIT:C7109"],"synonyms":[{"name":"carcinoma of distal biliary tract","type":"exact"},{"name":"carcinoma of the distal biliary tract","type":"exact"},{"name":"distal bile duct cancer","type":"exact"},{"name":"distal bile duct carcinoma","type":"exact"},{"name":"distal biliary tract carcinoma","type":"exact"},{"name":"extrahepatic (distal) bile duct cancer","type":"exact"}],"termid":"MONDO:0003707","xrefs":{"Monarch":{"xref_id":"0003707"}}}


id: GO:0046683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organophosphorus stimulus. Organophosphorus is a compound containing phosphorus bound to an organic molecule; several organophosphorus compounds are used as insecticides, and they are highly toxic cholinesterase inhibitors.","definition_xrefs":["ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to organophosphorus","synonyms":[{"name":"organophosphorus resistance","type":"related"},{"name":"organophosphorus susceptibility/resistance","type":"related"}],"termid":"GO:0046683"}


id: PBO:0081418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 274","termid":"PBO:0081418"}


id: PBO:0086274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with an N-terminal kelch-like domain; putative negative regulator of early meiotic gene expression; required, with Mds3p, for growth under alkaline conditions; PMD1 has a paralog, MDS3, that arose from the whole genome duplication","termid":"PBO:0086274"}


id: MONDO:0011207
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"homozygous familial hypercholesterolemia","termid":"MONDO:0018328"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xanthomatosis, susceptibility to","secondary_identifiers":["OMIM:602247","UMLS:C1865704","MEDGEN:356066"],"synonyms":[{"name":"xanthomatosis, susceptibility to","type":"exact"}],"termid":"MONDO:0011207","xrefs":{"Monarch":{"xref_id":"0011207"}}}


id: FYPO:0007373
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the methylation of histones in silent mating-type cassettes is abnormal. All histone methylation may be affected, or methylation of specific sites on specific histones may be altered.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone methylation during vegetative growth","termid":"FYPO:0000457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0002274","FYPO:0002494"],"is_obsolete":false,"name":"abnormal histone methylation at silent mating-type cassette during vegetative growth","synonyms":[{"name":"abnormal histone methylation at mating-type region heterochromatin during vegetative growth","type":"exact"},{"name":"abnormal histone methylation at silent mating-type cassette during mitotic cell cycle","type":"related"}],"termid":"FYPO:0007373"}


id: MONDO:1011448
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fanconi syndrome that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease, non-human animal","termid":"MONDO:1011360"},{"relation_name":"is_a","term_name":"renal disease, non-human animal","termid":"MONDO:1011909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fanconi syndrome, non-human animal","secondary_identifiers":["OMIA:000366"],"termid":"MONDO:1011448","xrefs":{"Monarch":{"xref_id":"1011448"}}}


id: PBO:0038271
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pubmed_doi","termid":"PBO:0038271"}


id: GO:0010148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Release of water by the plant into the air as water vapor mainly through leaves.","definition_xrefs":["GOC:sm","ISBN:0879015322"],"direct_ancestors":[{"relation_name":"is_a","term_name":"water transport","termid":"GO:0006833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"transpiration","secondary_identifiers":["Wikipedia:Transpiration"],"termid":"GO:0010148"}


id: GO:1901746
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of prephenate(2-).","definition_xrefs":["GOC:yaf","PMID:16752890","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid catabolic process","termid":"GO:0043649"},{"relation_name":"is_a","term_name":"prephenate(2-) metabolic process","termid":"GO:1901745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0044248","GO:0008150"],"is_obsolete":false,"name":"prephenate(2-) catabolic process","synonyms":[{"name":"prephenate breakdown","type":"exact"},{"name":"prephenate catabolism","type":"exact"},{"name":"prephenate degradation","type":"exact"},{"name":"prephenate(2-) breakdown","type":"exact"},{"name":"prephenate(2-) catabolism","type":"exact"},{"name":"prephenate(2-) degradation","type":"exact"}],"termid":"GO:1901746"}


id: MONDO:0005313
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Necrotizing enterocolitis (NEC) is a devastating disease that affects mostly the intestine of premature infants. The wall of the intestine is invaded by bacteria, which cause local infection and inflammation that can ultimately destroy the wall of the bowel (intestine). Such bowel wall destruction can lead to perforation of the intestine and spillage of stool into the infant's abdomen, which can result in an overwhelming infection and death.","direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"},{"relation_name":"is_a","term_name":"enterocolitis","termid":"MONDO:0009172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"necrotizing enterocolitis","secondary_identifiers":["MEDGEN:105440","NCIT:C84915","UMLS:C0520459","icd11.foundation:141267925","GARD:9767","EFO:0003928","MESH:D020345","Orphanet:391673","SCTID:2707005","ICD9:777.5"],"synonyms":[{"name":"NEC","type":"exact"},{"name":"necrotizing enterocolitis","type":"exact"},{"name":"necrotizing enterocolitis in fetus or newborn","type":"narrow"},{"name":"necrotizing enterocolitis in foetus or newborn","type":"narrow"}],"termid":"MONDO:0005313","xrefs":{"Monarch":{"xref_id":"0005313"}}}


id: GO:0103058
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: kaempferol 3-O-glucoside + UDP-L-rhamnose = kaempferol-3-glucoside-7-rhamnoside + UDP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete kaempferol 3-glucoside 7-O-rhamnosyltransferase activity (obsolete GO:0103058)","termid":"GO:0103058"}


id: PBO:0018231
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements E. coli ispA","termid":"PBO:0018231"}


id: MONDO:0010370
data:
  {"annotated_genes":["SJAG_01831"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87383],"is_not":false,"summary":null,"term":"MONDO:0010370"}]},"cv_name":"mondo","definition":"An X-linked inherited form of Cornelia De Lange syndrome caused by mutations in the SMC1A gene mapped to chromosome Xp11.22. Patients have a milder form of the syndrome compared to patients with the NIPBL gene mutation.","definition_xrefs":["NCIT:C75485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Cornelia de Lange syndrome","termid":"MONDO:0016033"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01831":null},"genotype_count":0,"is_obsolete":false,"name":"Cornelia de Lange syndrome 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15259","UMLS:C1802395","MEDGEN:315658","OMIM:300590","DOID:0080506"],"synonyms":[{"name":"CDLS2","type":"related"},{"name":"Cdls, X-linked","type":"related"},{"name":"Cornelia DE Lange syndrome 2","type":"related"},{"name":"Cornelia De Lange syndrome type 2","type":"exact"},{"name":"Cornelia De Lange syndrome, X-linked","type":"related"},{"name":"Cornelia de Lange syndrome 2","type":"exact"},{"name":"Cornelia de Lange syndrome 2, X-linked dominant","type":"exact"},{"name":"Cornelia de Lange syndrome caused by mutation in SMC1A","type":"exact"},{"name":"SMC1A Cornelia de Lange syndrome","type":"exact"},{"name":"X-linked Cornelia De Lange syndrome","type":"exact"}],"termid":"MONDO:0010370","terms_by_termid":{"MONDO:0010370":null},"xrefs":{"Monarch":{"xref_id":"0010370"}}}


id: MONDO:0018261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"NEVADA (Nevus Epidermicus Verrucosus with AngioDysplasia and Aneurysms) syndrome is a rare, life-threatening, cutaneous disease characterized by a keratinocytic epidermal nevus presenting thick, hystrix-like, white or brownish hyperkeratosis associated with multiple extracutaneous vascular malformations, including angiodysplasia that involves large-vessel arteriovenous shunts that may be fatal during the neonatal period.","definition_xrefs":["Orphanet:370059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melanocytic nevus","termid":"MONDO:0005073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"Nevada syndrome","secondary_identifiers":["GARD:21593","MEDGEN:1667994","UMLS:C4751431"],"synonyms":[{"name":"Nevus epidermicus verrucosus with angiodysplasia and aneurysms","type":"exact"}],"termid":"MONDO:0018261","xrefs":{"Monarch":{"xref_id":"0018261"}}}


id: GO:0044027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An epigenetic gene regulation mechanism that negatively regulates gene expression by methylation of cytosine residues in chromosomal CpG islands. CpG islands are genomic regions that contain a high frequency of the CG dinucleotide associated with the transcription start site of genes.","definition_xrefs":["Wikipedia:Cpg_island","PMID:11898023"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gene expression, epigenetic","termid":"GO:0045814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006325"],"is_obsolete":false,"name":"negative regulation of gene expression via chromosomal CpG island methylation","synonyms":[{"name":"DNA hypermethylation of CG island","type":"related"},{"name":"DNA hypermethylation of CpG island","type":"exact"},{"name":"epigenetic regulation of gene expression via CpG island hypermethylation","type":"exact"},{"name":"hypermethylation of CpG island","type":"exact"},{"name":"maintenance of DNA methylation","type":"broad"},{"name":"negative regulation of gene expression via CpG island hypermethylation","type":"exact"},{"name":"negative regulation of gene expression via CpG island methylation","type":"related"},{"name":"negative regulation of gene expression via chromosomal CG dinucleotide methylation","type":"related"},{"name":"negative regulation of gene expression via chromosomal CpG dinucleotide methylation","type":"exact"},{"name":"negative regulation of gene expression via chromosomal DNA cytosine methylation","type":"exact"}],"termid":"GO:0044027"}


id: GO:0071127
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha9-beta1 integrin complex bound to osteopontin.","definition_xrefs":["PMID:16005200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"alpha9-beta1 integrin-osteopontin complex","synonyms":[{"name":"ITGA9-ITGB1-SPP1 complex","type":"narrow"}],"termid":"GO:0071127"}


id: PBO:0066908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 209","termid":"PBO:0066908"}


id: GO:0032839
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"All of the contents of a dendrite, excluding the surrounding plasma membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection cytoplasm","termid":"GO:0120111"},{"relation_name":"part_of","term_name":"dendrite","termid":"GO:0030425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"dendrite cytoplasm","synonyms":[{"name":"dendritic cytoplasm","type":"exact"}],"termid":"GO:0032839"}


id: PBO:0052671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 39","termid":"PBO:0052671"}


id: MONDO:0030965
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete olmsted syndrome 2 (obsolete MONDO:0030965)","termid":"MONDO:0030965","xrefs":{"Monarch":{"xref_id":"0030965"}}}


id: GO:0015418
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2O + quaternary ammonium(out) = ADP + H+ + phosphate + quaternary ammonium(in).","definition_xrefs":["GOC:pz","RHEA:11036"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quaternary ammonium group transmembrane transporter activity","termid":"GO:0015651"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"ABC-type quaternary ammonium compound transporting activity","secondary_identifiers":["GO:0102908","MetaCyc:RXN-8638","EC:7.6.2.9"],"synonyms":[{"name":"ATP-dependent quaternary-ammonium compound transmembrane transporting activity","type":"related"},{"name":"ATPase-coupled quaternary ammonium compound transmembrane transporting activity","type":"related"},{"name":"glycine betaine/proline porter activity","type":"narrow"},{"name":"quarternary amine transporter activity","type":"broad"},{"name":"quaternary amine uptake transporter activity","type":"related"},{"name":"quaternary-amine-transporting ATPase activity","type":"related"},{"name":"quaternary-ammonium-compound ABC transporter","type":"exact"},{"name":"quaternary-ammonium-compound-transporting ATPase activity","type":"related"}],"termid":"GO:0015418"}


id: PATO:0002365
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Female quality of having complete, unaltered reproductive organs","definition_xrefs":["PATOC:MF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female","termid":"PATO:0000383"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intact female","termid":"PATO:0002365"}


id: PBO:0073940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC18A2 antisense RNA 1","termid":"PBO:0073940"}


id: PBO:0041351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement component 3 precursor pseudogene","termid":"PBO:0041351"}


id: PBO:0058575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6512","termid":"PBO:0058575"}


id: MONDO:0007987
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Kniest dysplasia is a severe type II collagenopathy characterized by a short trunk and limbs, prominent joints and midface hypoplasia (round face with a flat nasal root).","definition_xrefs":["Orphanet:485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"spondylometaphyseal dysplasia","termid":"MONDO:0016763"},{"relation_name":"is_a","term_name":"type 2 collagenopathy","termid":"MONDO:0022800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Kniest dysplasia","secondary_identifiers":["UMLS:C0265279","icd11.foundation:2088691719","GARD:6841","ICD9:756.9","MESH:C537207","OMIM:156550","NORD:1339","DOID:0080045","MEDGEN:75559","NANDO:2201350","NCIT:C125594","SCTID:53974002"],"synonyms":[{"name":"Kniest dysplasia","type":"exact"}],"termid":"MONDO:0007987","xrefs":{"Monarch":{"xref_id":"0007987"}}}


id: GO:0050028
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-2-aminohexano-6-lactam + H2O = L-lysine.","definition_xrefs":["EC:3.5.2.11","RHEA:21388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides","termid":"GO:0016812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0016810","GO:0003824"],"is_obsolete":false,"name":"L-lysine-lactamase activity","secondary_identifiers":["KEGG_REACTION:R00463","MetaCyc:L-LYSINE-LACTAMASE-RXN"],"synonyms":[{"name":"L-alpha-aminocaprolactam hydrolase activity","type":"related"},{"name":"L-lysinamidase activity","type":"related"},{"name":"L-lysine-1,6-lactam lactamhydrolase activity","type":"related"}],"termid":"GO:0050028"}


id: GO:0004677
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"DNA dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0004672"}],"interesting_parent_ids":["GO:0016301","GO:0004672","GO:0016740","GO:0003824","GO:0140096","GO:0003674"],"is_obsolete":false,"name":"DNA-dependent protein kinase activity","termid":"GO:0004677"}


id: GO:0097138
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex consisting of BAD and BCL-2, members of the Bcl-2 family of anti- and proapoptotic regulators.","definition_xrefs":["GOC:so","PMID:14634621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bcl-2 family protein complex","termid":"GO:0097136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"BAD-BCL-2 complex","termid":"GO:0097138"}


id: PBO:0114274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin family protein (FoldSeek), possible PF15874 family (Pfam-N)","termid":"PBO:0114274"}


id: PBO:0049788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 23","termid":"PBO:0049788"}


id: GO:0150143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of CD80 biosynthetic process.","definition_xrefs":["PMID:26936882","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glycoprotein biosynthetic process","termid":"GO:0010559"},{"relation_name":"regulates","term_name":"CD80 biosynthetic process","termid":"GO:0035780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of CD80 production","synonyms":[{"name":"regulation of CD80 biosynthetic process","type":"exact"}],"termid":"GO:0150143"}


id: GO:0036269
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The response to external or internal stimuli that results in the locomotory process of swimming. Swimming is the self-propelled movement of an organism through the water.","definition_xrefs":["GOC:cvs","PMID:16764679"],"direct_ancestors":[{"relation_name":"is_a","term_name":"locomotory behavior","termid":"GO:0007626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"swimming behavior","synonyms":[{"name":"swimming behaviour","type":"exact"}],"termid":"GO:0036269"}


id: MONDO:1010510
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any dilated cardiomyopathy in dogs in which the cause of the disease is a mutation in the PLN gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dilated cardiomyopathy, dog","termid":"MONDO:1010448"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dilated cardiomyopathy PLN-related, dog","secondary_identifiers":["OMIA:002195-9615"],"termid":"MONDO:1010510","xrefs":{"Monarch":{"xref_id":"1010510"}}}


id: PBO:0044657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dCTP pyrophosphatase 1","termid":"PBO:0044657"}


id: GO:0090439
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyzes the reaction: 7-hydroxylauroyl-CoA + 3 malonyl-CoA + 2 H+ = 2-(8-hydroxy-2-oxotridecyl)-6-oxopyran-4-olate + 3 CO2 + 4 coenzyme A.","definition_xrefs":["MetaCyc:RXN-16407","PMID:21193570"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"tetraketide alpha-pyrone synthase activity","termid":"GO:0090439"}


id: GO:1903742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of anterograde synaptic vesicle transport.","definition_xrefs":["GO_REF:0000058","PMID:25329901","GOC:kmv","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vesicle transport along microtubule","termid":"GO:1901608"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle transport","termid":"GO:1902803"},{"relation_name":"regulates","term_name":"anterograde synaptic vesicle transport","termid":"GO:0048490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of anterograde synaptic vesicle transport","termid":"GO:1903742"}


id: PBO:0052678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 46","termid":"PBO:0052678"}


id: PBO:0088108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Uroporphyrinogen III synthase; catalyzes the conversion of hydroxymethylbilane to uroporphyrinogen III, the fourth step in heme biosynthesis; deficiency in the human homolog can result in the disease congenital erythropoietic porphyria","termid":"PBO:0088108"}


id: FYPO:0007224
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which heterochromatin assembly is decreased in centromere outer repeat regions. Heterochromatin assembly is the assembly of chromatin into a compact and highly condensed form that is often, but not always, transcriptionally silent.","definition_xrefs":["PMID:31822915","GO:0031507","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal heterochromatin assembly at centromere outer repeat during vegetative growth","termid":"FYPO:0003098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased heterochromatin assembly at centromere outer repeat during vegetative growth","synonyms":[{"name":"decreased establishment of heterochromatin at centromere outer repeat","type":"exact"},{"name":"decreased heterochromatin assembly at centromere outer repeat at centromere otr during vegetative growth","type":"exact"},{"name":"decreased heterochromatin assembly at centromere outer repeat at centromeric outer repeat during vegetative growth","type":"exact"},{"name":"decreased heterochromatin assembly at centromere outer repeat at pericentric region during vegetative growth","type":"related"},{"name":"decreased heterochromatin assembly at centromere outer repeat at pericentromeric region during vegetative growth","type":"related"},{"name":"decreased heterochromatin assembly at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"decreased heterochromatin formation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"reduced heterochromatin assembly at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0007224"}


id: MONDO:0018386
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare male infertility due to hypothalamic-pituitary-gonadal axis disorder (obsolete MONDO:0018386)","secondary_identifiers":["Orphanet:399572"],"synonyms":[{"name":"rare male infertility due to gonadotropic axis disorder","type":"exact"},{"name":"rare male infertility due to hypothalamic-pituitary-testicular axis disorder","type":"exact"}],"termid":"MONDO:0018386","xrefs":{"Monarch":{"xref_id":"0018386"}}}


id: PBO:0044234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cullin 4A","termid":"PBO:0044234"}


id: PR:000024857
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteolytic cleavage product that is derived from P-factor precursor. In Schizosaccharomyces pombe 972h- the sequence is SYADFLRAYHSWNTFVNPDRPNL, corresponding to amino acids 100-122 of UniProtKB:Q09180-1.","definition_xrefs":["PRO:MSY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"map2/Clv:P-factor-like2","pombase_gene_id":"SPCC1795.06","synonyms":[{"name":"PomBase_original_PRO_term_name: P-factor-like 2","type":"exact"},{"name":"map2/Clv:P-factor-like2","type":"exact"}],"termid":"PR:000024857"}


id: GO:0170005
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of cyclic nucleotide phosphodiesterase.","definition_xrefs":["PMID:6667031","PMID:6259174","PMID:6087882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140677","GO:0030234","GO:0098772","GO:0003674"],"is_obsolete":false,"name":"cyclic nucleotide phosphodiesterase activator activity","termid":"GO:0170005"}


id: MONDO:0000604
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autonomic peripheral neuropathy (obsolete MONDO:0000604)","termid":"MONDO:0000604","xrefs":{"Monarch":{"xref_id":"0000604"}}}


id: PR:P07799
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- top1 gene.","definition_xrefs":["UniProtKB:P07799","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1703.14c","synonyms":[{"name":"DNA topoisomerase I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-top1","type":"exact"}],"termid":"PR:P07799"}


id: PBO:0055158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2577","termid":"PBO:0055158"}


id: GO:0004995
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a tachykinin neuropeptide and transmitting the signal across the membrane by activating an associated G-protein.","definition_xrefs":["PMID:7639617","Wikipedia:Tachykinin","GOC:ai","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor activity","termid":"GO:0008188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"tachykinin receptor activity","termid":"GO:0004995"}


id: PBO:0005435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperone activator Sti1 (predicted)","termid":"PBO:0005435"}


id: PBO:0113459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of structure-specific Mms4p-Mus81p endonuclease; cleaves branched DNA and DNA-protein cross-links; involved in DNA repair, replication fork stability, and joint molecule formation/resolution during meiotic recombination; promotes template switching during break-induced replication (BIR), causing non-reciprocal translocations (NRTs); helix-hairpin-helix protein; phosphorylation of non-catalytic subunit Mms4p by Cdc28p and Cdc5p during mitotic cell cycle activates function of Mms4p-Mus81p","termid":"PBO:0113459"}


id: PBO:0029392
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_nucleoplasm_during_cellular_response_to_hydroxyurea","termid":"PBO:0029392"}


id: GO:0003223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the compact cardiac ventricle muscle are generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ventricular cardiac muscle tissue morphogenesis","termid":"GO:0055010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventricular compact myocardium morphogenesis","termid":"GO:0003223"}


id: PBO:0042067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 137","termid":"PBO:0042067"}


id: MONDO:0001298
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mitral valve insufficiency that is present at birth.","definition_xrefs":["NCIT:C197881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular insufficiency disorder","termid":"MONDO:0020674"},{"relation_name":"is_a","term_name":"mitral valve insufficiency","termid":"MONDO:1030008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"congenital mitral valve insufficiency","secondary_identifiers":["MEDGEN:510600","MESH:D008944","SCTID:29928006","UMLS:C0158619","ICD9:396.3","ICD9:746.6","NANDO:2200303"],"synonyms":[{"name":"congenital insufficiency of mitral valve","type":"exact"},{"name":"congenital mitral insufficiency","type":"exact"}],"termid":"MONDO:0001298","xrefs":{"Monarch":{"xref_id":"0001298"}}}


id: PBO:0000582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA (m5U54) methyltransferase Trm2 (predicted)","termid":"PBO:0000582"}


id: PBO:0002445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"7SL signal recognition particle component","termid":"PBO:0002445"}


id: GO:0010041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(III) ion stimulus.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to iron ion","termid":"GO:0010039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to iron(III) ion","synonyms":[{"name":"response to iron(III)","type":"exact"}],"termid":"GO:0010041"}


id: GO:1901684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which arsenate is transported across a membrane.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arsenite transport","termid":"GO:0015700"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"arsenate ion transmembrane transport","termid":"GO:1901684"}


id: GO:0047376
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: all-trans-retinyl palmitate + H2O = all-trans-retinol + H+ + palmitate.","definition_xrefs":["RHEA:13933"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinyl-palmitate esterase activity","termid":"GO:0050253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016788","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"all-trans-retinyl-palmitate hydrolase, all-trans-retinol forming activity","secondary_identifiers":["KEGG_REACTION:R02368","Reactome:R-HSA-2404140","Reactome:R-HSA-2429643","MetaCyc:3.1.1.64-RXN"],"synonyms":[{"name":"all-trans-retinyl-palmitate acylhydrolase activity","type":"broad"},{"name":"all-trans-retinyl-palmitate hydrolase activity","type":"broad"},{"name":"retinyl-palmitate palmitohydrolase activity","type":"broad"}],"termid":"GO:0047376"}


id: GO:0030793
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-demethylstaurosporine + S-adenosyl-L-methionine = S-adenosyl-L-homocysteine + H+ + staurosporine.","definition_xrefs":["EC:2.1.1.139","RHEA:11696"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3'-demethylstaurosporine O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.139-RXN","KEGG_REACTION:R05757"],"synonyms":[{"name":"3'-demethoxy-3'-hydroxystaurosporine O-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:3'-demethylstaurosporine O-methyltransferase activity","type":"related"},{"name":"staurosporine synthase activity","type":"related"}],"termid":"GO:0030793"}


id: GO:0102686
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose(2-) + trans-zeatin = H+ + 9-(alpha-D-glucosyl)-trans-zeatin + UDP(3-).","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete UDP-glucose:trans-zeatin 9-N-glucosyltransferase (obsolete GO:0102686)","termid":"GO:0102686"}


id: PBO:0073450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secreted frizzled related protein 5","termid":"PBO:0073450"}


id: PBO:0117181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDX25 antisense RNA 1","termid":"PBO:0117181"}


id: PBO:0066306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recombination signal binding protein for immunoglobulin kappa J region like","termid":"PBO:0066306"}


id: GO:0035385
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a SLIT protein binding to a Roundabout (ROBO) family receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:BHF","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Roundabout signaling pathway","synonyms":[{"name":"ROBO signaling pathway","type":"exact"},{"name":"ROBO/SLIT signaling pathway","type":"exact"},{"name":"Roundabout signalling pathway","type":"exact"}],"termid":"GO:0035385"}


id: PBO:0067014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 23, pseudogene","termid":"PBO:0067014"}


id: PBO:0080563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WBP11 pseudogene 3","termid":"PBO:0080563"}


id: PBO:0109969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIA machinery iron sulphur cluster to apoprotein adaptor Mms19","termid":"PBO:0109969"}


id: PBO:0091011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH-dependent flavin oxidoreductase, implicated in cellular detoxification from family members","termid":"PBO:0091011"}


id: PBO:0113054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of COPI-mediated trafficking and tRNA nuclear export; enables Rna1p to access and activate Gsp1p-GTP bound to the export receptor tRNA complex during aminoacylation-dependent tRNA export; copurifies with tRNA export receptors; interacts with COPI coat proteins and regulates Golgi-to-ER trafficking; membrane fraction associated; mutations in members of the homologous human SCY1-like (SCYL) family of pseudokinases are linked to peripheral neuropathy, cerebellar atrophy, ataxia and ALS","termid":"PBO:0113054"}


id: MONDO:0002729
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rhabdoid tumor that arises from the kidney. It occurs in children and it is associated with abnormalities of chromosome 22. It is characterized by the presence of cells with a large eccentric nucleus, prominent nucleolus, and abundant cytoplasm. The prognosis is poor.","definition_xrefs":["NCIT:C8715"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhabdoid tumor","termid":"MONDO:0002728"},{"relation_name":"is_a","term_name":"kidney sarcoma","termid":"MONDO:0002930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005240"],"is_obsolete":false,"name":"rhabdoid tumor of the kidney","secondary_identifiers":["DOID:3674","UMLS:C0854917","MEDGEN:208930","EFO:1000512"],"synonyms":[{"name":"MRTK","type":"exact"},{"name":"kidney rhabdoid cancer","type":"related"},{"name":"kidney rhabdoid tumor","type":"exact"},{"name":"kidney rhabdoid tumour","type":"exact"},{"name":"malignant rhabdoid tumor of kidney","type":"exact"},{"name":"malignant rhabdoid tumor of the kidney","type":"exact"},{"name":"malignant rhabdoid tumour of kidney","type":"exact"},{"name":"malignant rhabdoid tumour of the kidney","type":"exact"},{"name":"renal rhabdoid neoplasm","type":"exact"},{"name":"renal rhabdoid tumor","type":"exact"},{"name":"renal rhabdoid tumour","type":"exact"},{"name":"rhabdoid neoplasm of kidney","type":"exact"},{"name":"rhabdoid neoplasm of the kidney","type":"exact"},{"name":"rhabdoid tumor of kidney","type":"exact"},{"name":"rhabdoid tumor of the kidney","type":"exact"},{"name":"rhabdoid tumor of the kidney (RTK)","type":"exact"},{"name":"rhabdoid tumour of kidney","type":"exact"},{"name":"rhabdoid tumour of the kidney (RTK)","type":"exact"}],"termid":"MONDO:0002729","xrefs":{"Monarch":{"xref_id":"0002729"}}}


id: PBO:0039561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 54","termid":"PBO:0039561"}


id: GO:0070738
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the posttranslational transfer of one or more glycine residues to a specific glutamate residue on a target tubulin molecule; acts on alpha or beta tubulin.","definition_xrefs":["GOC:mah","PMID:19524510"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-glycine ligase activity","termid":"GO:0070735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0140096","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"tubulin-glycine ligase activity","synonyms":[{"name":"tubulin glycylase activity","type":"exact"}],"termid":"GO:0070738"}


id: MONDO:0023008
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete drachtman weinblatt sitarz syndrome (obsolete MONDO:0023008)","termid":"MONDO:0023008","xrefs":{"Monarch":{"xref_id":"0023008"}}}


id: PBO:0000410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy C terminal domain family protein (predicted)","termid":"PBO:0000410"}


id: PBO:0042884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 298","termid":"PBO:0042884"}


id: GO:0045742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epidermal growth factor receptor signaling pathway","termid":"GO:0042058"},{"relation_name":"is_a","term_name":"positive regulation of ERBB signaling pathway","termid":"GO:1901186"},{"relation_name":"positively_regulates","term_name":"epidermal growth factor receptor signaling pathway","termid":"GO:0007173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of epidermal growth factor receptor signaling pathway","secondary_identifiers":["Reactome:R-HSA-8849469"],"synonyms":[{"name":"activation of epidermal growth factor receptor signaling pathway","type":"narrow"},{"name":"positive regulation of EGF receptor signaling pathway","type":"exact"},{"name":"positive regulation of EGF receptor signalling pathway","type":"exact"},{"name":"positive regulation of EGFR signaling pathway","type":"exact"},{"name":"stimulation of epidermal growth factor receptor signaling pathway","type":"narrow"},{"name":"up regulation of epidermal growth factor receptor signaling pathway","type":"exact"},{"name":"up-regulation of epidermal growth factor receptor signaling pathway","type":"exact"},{"name":"upregulation of epidermal growth factor receptor signaling pathway","type":"exact"}],"termid":"GO:0045742"}


id: PBO:0057550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 664a","termid":"PBO:0057550"}


id: PBO:0087459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a heterodimeric guanine nucleotide exchange factor (GEF); subunit of the Mon1-Ccz1 GEF complex which stimulates nucleotide exchange and activation of Ypt7p, a Rab family GTPase involved in membrane tethering and fusion events at the late endosome and vacuole; GEF activity is stimulated by membrane association and anionic phospholipids; role in localizing Ypt7p to the vacuolar membrane; required for autophagy, the CVT pathway and mitophagy; potential Cdc28 substrate","termid":"PBO:0087459"}


id: GO:0061313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands and contributing to the progression of the heart over time.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway involved in heart development","termid":"GO:0061311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"fibroblast growth factor receptor signaling pathway involved in heart development","synonyms":[{"name":"fibroblast growth factor receptor signalling pathway involved in heart development","type":"exact"}],"termid":"GO:0061313"}


id: GO:0000702
data:
  {"annotated_genes":["SJAG_03724","SJAG_02261","SJAG_01119"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96478],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034042"},{"annotations":[96479],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034043"},{"annotations":[73949,74460,96480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034039"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal of oxidized bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site.","definition_xrefs":["PMID:11554296","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA N-glycosylase activity","termid":"GO:0019104"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01119":null,"SJAG_02261":null,"SJAG_03724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0003674","GO:0016787","GO:0140097"],"is_obsolete":false,"name":"oxidized base lesion DNA N-glycosylase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0000702","terms_by_termid":{"GO:0034039":null,"GO:0034042":null,"GO:0034043":null}}


id: PBO:0079180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis specific protein Y-linked 9","termid":"PBO:0079180"}


id: PBO:0061647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUDT19 pseudogene 5","termid":"PBO:0061647"}


id: PBO:0065356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPN13 like Y-linked pseudogene 6","termid":"PBO:0065356"}


id: GO:0043630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end of a non-coding RNA, occurring as part of the process of polyadenylation-dependent non-coding RNA catabolism.","definition_xrefs":["GOC:dph","GOC:jl","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process (obsolete GO:0043630)","synonyms":[{"name":"ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process","type":"related"},{"name":"ncRNA polyadenylation involved in poly(A)-dependent ncRNA catabolic process","type":"related"}],"termid":"GO:0043630"}


id: MONDO:0021909
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete aplasia cutis congenita recessive (obsolete MONDO:0021909)","termid":"MONDO:0021909","xrefs":{"Monarch":{"xref_id":"0021909"}}}


id: PBO:0002559
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by Ste11","termid":"PBO:0002559"}


id: GO:0015322
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of an oligopeptide or oligopeptides from one side of a membrane to the other, up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction.","definition_xrefs":["GOC:mtg_transport"],"gene_count":0,"genotype_count":0,"name":"obsolete secondary active oligopeptide transmembrane transporter activity (obsolete GO:0015322)","synonyms":[{"name":"oligopeptide porter activity","type":"related"}],"termid":"GO:0015322"}


id: GO:0097077
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of copper(I) (Cu+).","definition_xrefs":["GOC:rs","PMID:19928961"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion sensor activity","termid":"GO:0140784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140299"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0098772","GO:0140299","GO:0003674"],"is_obsolete":false,"name":"copper ion sensor activity","termid":"GO:0097077"}


id: GO:0000976
data:
  {"annotated_genes":["SJAG_05153","SJAG_05006","SJAG_03354","SJAG_00664","SJAG_00073","SJAG_00202","SJAG_04092","SJAG_01062","SJAG_00987","SJAG_03911","SJAG_05288","SJAG_05253","SJAG_04388","SJAG_03473","SJAG_06576","SJAG_03622","SJAG_00692","SJAG_05337","SJAG_05343","SJAG_03143","SJAG_01243","SJAG_02406","SJAG_01157","SJAG_02138","SJAG_02730","SJAG_04839","SJAG_02752","SJAG_02311","SJAG_03923","SJAG_00266","SJAG_05247","SJAG_01307","SJAG_02956","SJAG_01740","SJAG_04855","SJAG_02747","SJAG_02252","SJAG_00861","SJAG_01916","SJAG_03014","SJAG_00037","SJAG_06599","SJAG_00163","SJAG_00896","SJAG_00698","SJAG_03519","SJAG_04381","SJAG_03879","SJAG_00210","SJAG_01343","SJAG_04584","SJAG_02938","SJAG_02709","SJAG_02922","SJAG_00386","SJAG_00741","SJAG_03918","SJAG_03120","SJAG_02242","SJAG_02472","SJAG_01930","SJAG_00421","SJAG_04421","SJAG_01441","SJAG_02415","SJAG_02254","SJAG_02810","SJAG_04191","SJAG_04611","SJAG_02326","SJAG_04749","SJAG_00304","SJAG_00926","SJAG_02813","SJAG_00693","SJAG_02149","SJAG_02458","SJAG_00634","SJAG_04036","SJAG_05339","SJAG_03346","SJAG_00792","SJAG_04249","SJAG_00124","SJAG_02569","SJAG_00958","SJAG_04712","SJAG_03538","SJAG_00979","SJAG_01725","SJAG_04917","SJAG_00802","SJAG_03735","SJAG_02048","SJAG_02052","SJAG_01583","SJAG_03183","SJAG_03388","SJAG_02218","SJAG_01694","SJAG_03241","SJAG_04009","SJAG_00045","SJAG_04813","SJAG_03484"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71813,72179,72398,73332,76585,77239,80680],"is_not":false,"summary":null,"term":"GO:0000976"},{"annotations":[71715],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001046"},{"annotations":[98504,77794],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001018"},{"annotations":[79529],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001165"},{"annotations":[79733,76065],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001164"},{"annotations":[103669,80220],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001163"},{"annotations":[79893,96026,97867,80792,104772,73755,88375,93646,97863,106439,108952,92254,78737,111182,76661,72440,72839,72473,76149,78414,109505,112234,75407,92807,74205,112194,74738,96377,99830,113993,75926,72256,97391,76259,103874,97866,80136,103017,89382,116909,88799,101811,102602,73090,73427,70465,96912,95079,104276,88744,107049,107895,98747,100451,111199,111215,95062,116772,118656,69683,90437,77981,97865,115137,97703,97261,97864,111374,80283,74500,75263,102369,79855,75205,79970,89807,74435],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000978"},{"annotations":[107377,109127],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044377"},{"annotations":[89625,94484,112195,95912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000979"},{"annotations":[107896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001162"},{"annotations":[77376,67008,89135],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000977"},{"annotations":[88530],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000992"},{"annotations":[70167],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001002"},{"annotations":[70168],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001003"},{"annotations":[77896,95915],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001006"},{"annotations":[74696,102604,74621],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001147"}]},"cv_name":"molecular_function","definition":"Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. 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id: PBO:0048239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G antigen 8","termid":"PBO:0048239"}


id: PBO:0031434
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_1-NA-PP1","termid":"PBO:0031434"}


id: PBO:0057125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 208b","termid":"PBO:0057125"}


id: MONDO:0021125
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An attribute of a disease.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disease characteristic","secondary_identifiers":["NCIT:C41009"],"synonyms":[{"name":"disease qualifier","type":"exact"},{"name":"modifier","type":"exact"},{"name":"qualifier","type":"exact"}],"termid":"MONDO:0021125","xrefs":{"Monarch":{"xref_id":"0021125"}}}


id: PBO:0064881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP2CA divergent transcript","termid":"PBO:0064881"}


id: PBO:0058795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR7515 host gene","termid":"PBO:0058795"}


id: PBO:0068419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding region (RNP1, RRM) containing 3","termid":"PBO:0068419"}


id: PBO:0054130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1496","termid":"PBO:0054130"}


id: PBO:0066016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAMP2 antisense RNA 1","termid":"PBO:0066016"}


id: PBO:0031607
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_M_phase_progression","termid":"PBO:0031607"}


id: GO:0019917
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The dehydration of peptidyl-serine, followed by hydrogenation to produce peptidyl-D-alanine.","definition_xrefs":["RESID:AA0191"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-D-alanine racemization via peptidyl-L-serine (obsolete GO:0019917)","termid":"GO:0019917"}


id: PBO:0054797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LINC02210-CRHR1 readthrough","termid":"PBO:0054797"}


id: PBO:0064510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II subunit J2","termid":"PBO:0064510"}


id: PBO:0005631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin/metalloprotease fusion protein (predicted)","termid":"PBO:0005631"}


id: MONDO:0019608
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete 46,XX disorder of sex development induced by maternal-derived androgen (obsolete MONDO:0019608)","secondary_identifiers":["icd11.foundation:293874628","Orphanet:91144"],"synonyms":[{"name":"46,XX DSD induced by maternal-derived androgen","type":"exact"}],"termid":"MONDO:0019608","xrefs":{"Monarch":{"xref_id":"0019608"}}}


id: GO:0061364
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The apoptotic process that contributes to luteolysis.","definition_xrefs":["PMID:18566128","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process involved in development","termid":"GO:1902742"},{"relation_name":"part_of","term_name":"luteolysis","termid":"GO:0001554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apoptotic process involved in luteolysis","synonyms":[{"name":"apoptosis involved in luteolysis","type":"narrow"},{"name":"structural luteolysis","type":"exact"}],"termid":"GO:0061364"}


id: FYPO:0001417
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms an equatorial microtubule organizing center in an abnormal location. The normal location is at the center of the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton during vegetative growth","termid":"FYPO:0004315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000054","FYPO:0002399"],"is_obsolete":false,"name":"mislocalized eMTOC","synonyms":[{"name":"mislocalised eMTOC","type":"exact"},{"name":"mislocalized eMTOC during mitotic cell cycle","type":"related"},{"name":"mislocalized eMTOC during vegetative growth","type":"exact"},{"name":"mislocalized equatorial microtubule organizing center","type":"exact"}],"termid":"FYPO:0001417"}


id: PBO:0087020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribose methyltransferase; modifies a functionally critical, conserved nucleotide in mitochondrial 21S rRNA","termid":"PBO:0087020"}


id: MONDO:0017348
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lymphoepithelial-like carcinoma is a rare, malignant epithelial tumor, composed of undifferentiated epithelial cells with dense lymphoid stroma, mimicking lymphoepithelioma. It often shows association with Epstein-Barr virus infection and can develop in various organs, such as the nasopharynx, stomach, skin, breast and lungs, among others. The presenting symptoms, as well as the radiologic features, are usually nonspecific and depend on the affected site and organ.","definition_xrefs":["Orphanet:289682"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Epstein-Barr virus-associated carcinoma","termid":"MONDO:0017344"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphoepithelial-like carcinoma","secondary_identifiers":["GARD:21151"],"termid":"MONDO:0017348","xrefs":{"Monarch":{"xref_id":"0017348"}}}


id: MONDO:0018305
data:
  {"annotated_genes":["SJAG_04743"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86419],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010600"}]},"cv_name":"mondo","definition":"Chronic granulomatous disease (CGD) is a rare primary immunodeficiency, mainly affecting phagocytes, which is characterized by an increased susceptibility to severe and recurrent bacterial and fungal infections, along with the development of granulomas.","definition_xrefs":["Orphanet:379"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"inflammatory bowel disease","termid":"MONDO:0005265"},{"relation_name":"excluded_subClassOf","term_name":"functional neutrophil defect","termid":"MONDO:0015978"},{"relation_name":"is_a","term_name":"phagocyte bactericidal dysfunction","termid":"MONDO:0005910"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"},{"relation_name":"is_a","term_name":"defective phagocytic cell engulfment","termid":"MONDO:0024626"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04743":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"chronic granulomatous disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2200757","GARD:6100","SCTID:387759001","UMLS:C0018203","MESH:D006105","NCIT:C26788","MEDGEN:5377","NANDO:1200357","NORD:968","OMIMPS:306400","DOID:3265","MedDRA:10008906","icd11.foundation:1329764681"],"synonyms":[{"name":"Bridges-Good syndrome","type":"exact"},{"name":"CGD","type":"exact"},{"name":"Quie syndrome","type":"exact"},{"name":"chronic septic granulomatosis","type":"exact"},{"name":"congenital dysphagocytosis","type":"exact"},{"name":"granulomatous disease, chronic","type":"related"}],"termid":"MONDO:0018305","terms_by_termid":{"MONDO:0010600":null},"xrefs":{"Monarch":{"xref_id":"0018305"}}}


id: GO:0002550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of the plasma kallikrein-kinin cascade.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of kinin cascade","termid":"GO:0002258"},{"relation_name":"is_a","term_name":"regulation of plasma kallikrein-kinin cascade","termid":"GO:0002529"},{"relation_name":"positively_regulates","term_name":"plasma kallikrein-kinin cascade","termid":"GO:0002353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0051604"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"positive regulation of plasma kallikrein-kinin cascade","synonyms":[{"name":"activation of plasma kallikrein-kinin cascade","type":"narrow"},{"name":"stimulation of plasma kallikrein-kinin cascade","type":"narrow"},{"name":"up regulation of plasma kallikrein-kinin cascade","type":"exact"},{"name":"up-regulation of plasma kallikrein-kinin cascade","type":"exact"},{"name":"upregulation of plasma kallikrein-kinin cascade","type":"exact"}],"termid":"GO:0002550"}


id: FYPO:0004061
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which UV-damage excision repair occurs to a lower extent than normal during G1 phase of the mitotic cell cycle. UV-damage excision repair is a DNA repair process that is initiated by an endonuclease that introduces a single-strand incision immediately 5' of a UV-induced damage site, and that acts on both cyclobutane pyrimidine dimers (CPDs) and pyrimidine-pyrimidone 6-4 photoproducts (6-4PPs).","definition_xrefs":["GO:0070914","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased UV-damage excision repair","termid":"FYPO:0004031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0000002","FYPO:0000293","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased UV-damage excision repair during mitotic G1 phase","synonyms":[{"name":"decreased UV-damage excision repair during G1 phase of mitotic cell cycle","type":"related"},{"name":"decreased UV-damage excision repair during mitotic G1 during vegetative growth","type":"exact"},{"name":"reduced UV-damage excision repair during mitotic G1 phase","type":"exact"}],"termid":"FYPO:0004061"}


id: PBO:0080092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 54","termid":"PBO:0080092"}


id: PBO:0054978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2392","termid":"PBO:0054978"}


id: FYPO:0006371
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of prophase of the first meiotic nuclear division is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell cycle phase","termid":"FYPO:0003833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal duration of meiotic prophase I","termid":"FYPO:0006371"}


id: PBO:0084396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; protein abundance increases and forms cytoplasmic foci in response to DNA replication stress","termid":"PBO:0084396"}


id: GO:1990267
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a transition metal nanoparticle.","definition_xrefs":["PMID:23150627"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to transition metal nanoparticle","synonyms":[{"name":"response to colloidal metal","type":"related"},{"name":"response to neutral metal atoms","type":"related"}],"termid":"GO:1990267"}


id: PBO:0067897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 199","termid":"PBO:0067897"}


id: PBO:0079724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream binding transcription factor","termid":"PBO:0079724"}


id: GO:0044218
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The cell membrane of a secondary organism with which the first organism is interacting.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"other organism part","termid":"GO:0044217"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"other organism cell membrane","secondary_identifiers":["GO:0044279"],"synonyms":[{"name":"foreign membrane","type":"related"},{"name":"other organism membrane","type":"broad"}],"termid":"GO:0044218"}


id: PBO:0056388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPK activated protein kinase 3","termid":"PBO:0056388"}


id: GO:0061924
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the formation of radial glial scaffolds. The scaffolds are used as a substrate for the radial migration of cells.","definition_xrefs":["PMID:22076441"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell morphogenesis","termid":"GO:0022604"},{"relation_name":"regulates","term_name":"formation of radial glial scaffolds","termid":"GO:0021943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of formation of radial glial scaffolds","synonyms":[{"name":"regulation of Bergmann fiber biosynthesis","type":"related"},{"name":"regulation of Bergmann fiber formation","type":"related"},{"name":"regulation of radial glial scaffold formation","type":"exact"}],"termid":"GO:0061924"}


id: PBO:0029802
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cables","termid":"PBO:0029802"}


id: PBO:0002148
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"focus formation at heterochromatic regions, Swi5_dependent","termid":"PBO:0002148"}


id: MONDO:0019895
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 4","termid":"MONDO:0016903"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal monosomy 4q","secondary_identifiers":["Orphanet:96145","MEDGEN:1680190","UMLS:C5190514","GARD:19327"],"synonyms":[{"name":"distal deletion 4q","type":"exact"},{"name":"distal monosomy type 4q","type":"exact"},{"name":"monosomy 4qter","type":"exact"},{"name":"telomeric deletion 4q","type":"exact"}],"termid":"MONDO:0019895","xrefs":{"Monarch":{"xref_id":"0019895"}}}


id: GO:0031061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent addition of methyl groups to histones.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone methylation (obsolete GO:0031061)","synonyms":[{"name":"down regulation of histone methylation","type":"exact"},{"name":"down-regulation of histone methylation","type":"exact"},{"name":"downregulation of histone methylation","type":"exact"},{"name":"inhibition of histone methylation","type":"narrow"}],"termid":"GO:0031061"}


id: MONDO:1012337
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"reduced glutathione deficiency, non-human animal","termid":"MONDO:1011699"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reduced glutathione deficiency, dog","secondary_identifiers":["OMIA:001235-9615"],"termid":"MONDO:1012337","xrefs":{"Monarch":{"xref_id":"1012337"}}}


id: MOD:01388
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue into 1-amino-2-propanol.","definition_xrefs":["ChEBI:15675","PubMed:7328054","RESID:AA0465"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"},{"relation_name":"is_a","term_name":"decarboxylated residue","termid":"MOD:00960"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-amino-2-propanol","synonyms":[{"name":"(2R)-1-aminopropan-2-ol","type":"exact"},{"name":"1-amino-2-hydroxypropane","type":"exact"},{"name":"1-amino-2-propanol","type":"exact"},{"name":"1-methyl-2-aminoethanol","type":"exact"},{"name":"2-amino-1-methylethanol","type":"exact"},{"name":"2-hydroxy-1-propylamine","type":"exact"},{"name":"2-hydroxypropanamine","type":"exact"},{"name":"2-hydroxypropylamine","type":"exact"},{"name":"MOD_RES Decarboxylated threonine","type":"exact"},{"name":"alpha-aminoisopropyl alcohol","type":"exact"},{"name":"dCbxThr","type":"exact"},{"name":"decarboxylated threonine","type":"exact"},{"name":"isopropanolamine","type":"exact"},{"name":"threamine","type":"exact"}],"termid":"MOD:01388"}


id: PBO:0030191
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-swollen_elongated_multinucleate_aseptate_vegetative_cell","termid":"PBO:0030191"}


id: FYPO:0004288
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the number of GT dinucleotide microsatellite repeats present in a sequence varies more than normal.","definition_xrefs":["PomBase:mah","PomBase:al","PMID:18062930"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased GT repeat stability","synonyms":[{"name":"decreased GT dinucleotide repeat stability","type":"exact"},{"name":"decreased GT microsatellite repeat stability","type":"exact"},{"name":"reduced GT repeat stability","type":"exact"}],"termid":"FYPO:0004288"}


id: PBO:0077224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane channel like 1","termid":"PBO:0077224"}


id: PBO:0068175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 482","termid":"PBO:0068175"}


id: GO:1905773
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 8-hydroxy-2'-deoxyguanosine an oxidized purine residue found in damaged DNA.","definition_xrefs":["GOC:BHF","GOC:BHF_telomere","GOC:TermGenie","GOC:nc","PMID:19734539","GO_REF:0000067"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidized purine DNA binding","termid":"GO:0032357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0005488","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"8-hydroxy-2'-deoxyguanosine DNA binding","termid":"GO:1905773"}


id: MONDO:0002504
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete grade III astrocytoma (obsolete MONDO:0002504)","termid":"MONDO:0002504","xrefs":{"Monarch":{"xref_id":"0002504"}}}


id: SO:0001752
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A SL2_acceptor_site which appends the SL7 RNA leader sequence to the 5' end of an mRNA. SL7 acceptor sites occur in genes in internal segments of polycistronic transcripts.","definition_xrefs":["SO:nlw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SL2_acceptor_site","termid":"SO:0000709"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SL7_acceptor_site","synonyms":[{"name":"SL37 acceptor site","type":"exact"}],"termid":"SO:0001752"}


id: GO:2001167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H2B ubiquitination.","definition_xrefs":["PMID:12876293"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H2B ubiquitination (obsolete GO:2001167)","termid":"GO:2001167"}


id: PBO:0086285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in cellular adhesion and filamentous growth; similar to Emp70p and Tmn2p; member of Transmembrane Nine family with 9 transmembrane segments; localizes to Golgi; induced by 8-methoxypsoralen plus UVA irradiation","termid":"PBO:0086285"}


id: PBO:0084677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial aspartyl-tRNA synthetase; required for acylation of aspartyl-tRNA; yeast and bacterial aspartyl-, asparaginyl-, and lysyl-tRNA synthetases contain regions with high sequence similarity, suggesting a common ancestral gene","termid":"PBO:0084677"}


id: MOD:00615
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because entry Unimod:261 site N-term R was abandoned. Remap to MOD:00584","definition_xrefs":["PubMed:14689565","Unimod:261"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00615 4-sulfophenyl isothiocyante modification to N-term R (obsolete MOD:00615)","termid":"MOD:00615"}


id: FYPO:0000001
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_00124:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00124","name":"SJAG_00124delta","uniquename":"SJAG_00124:allele-1"},"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_00364:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00364","name":"rad3delta","uniquename":"SJAG_00364:allele-1"},"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_00429:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00429","name":"rad26delta","uniquename":"SJAG_00429:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_00993:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00993","name":"byr1delta","uniquename":"SJAG_00993:allele-1"},"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01081:allele-1":{"allele_type":"nonsense_mutation","description":"S427>stop","gene_uniquename":"SJAG_01081","name":"ade6-domE","uniquename":"SJAG_01081:allele-1"},"SJAG_01081:allele-2":{"allele_type":"amino_acid_mutation","description":"Q262A","gene_uniquename":"SJAG_01081","name":"ade6-domK","uniquename":"SJAG_01081:allele-2"},"SJAG_01081:allele-3":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01081","name":"ade6delta","uniquename":"SJAG_01081:allele-3"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01143:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"711-723","gene_uniquename":"SJAG_01143","name":"mid1-delta(711-723 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type"}]}]},"win1delta":{"display_name":"win1delta","display_uniquename":"win1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04777:allele-1","expression":"Null"}]}]},"wis1delta":{"display_name":"wis1delta","display_uniquename":"wis1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02342:allele-1","expression":"Null"}]}]},"wis4delta":{"display_name":"wis4delta","display_uniquename":"wis4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03384:allele-1","expression":"Null"}]}]}},"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02266","SJAG_04464","SJAG_03118","SJAG_05207","SJAG_02621","SJAG_03596","SJAG_03892","SJAG_01787","SJAG_04551","SJAG_00124","SJAG_01143","SJAG_00871","SJAG_04522","SJAG_04574","SJAG_00118","SJAG_03575","SJAG_02392","SJAG_00028","SJAG_03689","SJAG_01680","SJAG_04280","SJAG_03198","SJAG_01205","SJAG_02668","SJAG_01050","SJAG_02592","SJAG_01946"],"name":"phenotype","references_by_uniquename":{"PMID:19330769":null,"PMID:20368354":null,"PMID:21802294":null,"PMID:21905090":null,"PMID:22300943":null,"PMID:23090706":null,"PMID:23786411":null,"PMID:23873862":null,"PMID:24184107":null,"PMID:24699070":null,"PMID:25318672":null,"PMID:25866389":null,"PMID:26774782":null,"PMID:27059155":null,"PMID:27678009":null,"PMID:28954740":null,"PMID:29566183":null,"PMID:30664646":null,"PMID:30726171":null,"PMID:31150379":null,"PMID:31956022":null,"PMID:32109380":null,"PMID:32243490":null,"PMID:32915139":null,"PMID:33495454":null,"PMID:33791858":null,"PMID:34198697":null,"PMID:35226668":null,"PMID:36058798":null,"PMID:36695178":null,"PMID:37164017":null,"PMID:37233261":null},"single_locus_annotated_genes":["SJAG_03356","SJAG_00118","SJAG_00601","SJAG_01410","SJAG_04489","SJAG_01834","SJAG_03449","SJAG_05207","SJAG_02266","SJAG_04464","SJAG_01374","SJAG_03164","SJAG_02409","SJAG_01242","SJAG_04280","SJAG_02392","SJAG_02527","SJAG_00993","SJAG_04697","SJAG_01906","SJAG_03143","SJAG_03720","SJAG_02594","SJAG_03250","SJAG_01605","SJAG_04061","SJAG_01205","SJAG_02342","SJAG_01458","SJAG_03940","SJAG_01050","SJAG_03048","SJAG_05242","SJAG_00124","SJAG_04777","SJAG_04287","SJAG_04912","SJAG_02576","SJAG_00514","SJAG_01753","SJAG_02379","SJAG_01956","SJAG_04843","SJAG_03581","SJAG_02592","SJAG_01355","SJAG_02796","SJAG_03453","SJAG_00429","SJAG_01330","SJAG_04703","SJAG_01745","SJAG_04312","SJAG_01718","SJAG_03689","SJAG_03753","SJAG_04671","SJAG_02763","SJAG_04349","SJAG_03920","SJAG_01794","SJAG_04522","SJAG_01081","SJAG_00426","SJAG_00266","SJAG_01143","SJAG_04284","SJAG_01946","SJAG_03891","SJAG_01787","SJAG_04332","SJAG_03916","SJAG_03575","SJAG_02486","SJAG_01181","SJAG_04574","SJAG_03198","SJAG_04551","SJAG_00610","SJAG_02695","SJAG_02252","SJAG_04883","SJAG_03783","SJAG_04009","SJAG_03384","SJAG_02771","SJAG_03351","SJAG_00028","SJAG_03596","SJAG_02013","SJAG_02923","SJAG_02819","SJAG_02860","SJAG_01680","SJAG_00409","SJAG_00364","SJAG_03892","SJAG_02621","SJAG_03444"],"single_locus_genotype_uniquenames":["agn1delta","rad3delta","Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","ago1delta","pyp1delta","man1delta","cem1delta","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","arb1delta","ptp4delta","gap1delta","rad51delta","sdh3delta","pmk1delta","lem2delta","rga4delta","scd1delta","oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","cmp7delta","mid1-delta(711-723_a.a.)-711-723-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","sst4delta","gpd1delta","vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","tip1delta","sep1delta","rdp1delta","wis1delta","for3delta","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","nup61delta","mid1delta","ned1S235A_S651-S235A__S651-amino_acid_mutation-expression-not_assayed_or_wild_type","wis4delta","mrc1delta","Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","Pmk1Sp-Pmk1_from_S._pombe-other-expression-not_assayed_or_wild_type","wcs1delta","vps28delta","rad24delta","rad1delta","did4delta","chp1delta","Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","win1delta","efc25delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","rad26delta","rip1delta","oar2delta","chk1delta","pom1delta","arb2delta","acb1delta","vps24delta","rga6delta","alx1delta","ned1-5A-S499A__S538A__T620A__T638A__S651A-amino_acid_mutation-expression-not_assayed_or_wild_type","vps32delta","ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","ura4delta","ste6delta","vps25delta","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","nem2delta","ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","gef1delta","rad9delta","nup132delta","pck2delta","pck1delta","atf1delta","mkh1delta","wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","sty1delta","dcr1delta","pom152delta","byr1delta","pek1delta","gms1delta","wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","scd2delta","rad25delta","crb2delta","mad2delta","mdh1delta","cds1delta","tel1delta","ras1delta","cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","byr2delta","ade6-domK-Q262A-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","wcs2delta","SJAG_00124delta","lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","mid2delta","fum1delta","pka1delta","chk1-P470L-P470L-amino_acid_mutation-expression-not_assayed_or_wild_type","vps4delta","ade6-domE-S427>stop-nonsense_mutation-expression-not_assayed_or_wild_type","clr4delta","nem1delta","stc1delta","cox6delta","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","nur1delta","ned1delta","ste11delta","spk1delta","ade6delta","ace2delta"],"synonyms":[{"name":"fission yeast phenotype","type":"exact"}],"termid":"FYPO:0000001","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000015":null,"FYECO:0000078":null,"FYECO:0000081":null,"FYECO:0000102":null,"FYECO:0000103":null,"FYECO:0000117":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000207":null,"FYECO:0000248":null,"FYECO:0000272":null,"FYECO:0000314":null,"FYECO:0000315":null,"FYECO:0000338":null,"FYPO:0000026":null,"FYPO:0000079":null,"FYPO:0000080":null,"FYPO:0000082":null,"FYPO:0000085":null,"FYPO:0000087":null,"FYPO:0000088":null,"FYPO:0000097":null,"FYPO:0000106":null,"FYPO:0000107":null,"FYPO:0000118":null,"FYPO:0000124":null,"FYPO:0000198":null,"FYPO:0000231":null,"FYPO:0000245":null,"FYPO:0000271":null,"FYPO:0000280":null,"FYPO:0000324":null,"FYPO:0000356":null,"FYPO:0000579":null,"FYPO:0000584":null,"FYPO:0000588":null,"FYPO:0000590":null,"FYPO:0000595":null,"FYPO:0000596":null,"FYPO:0000618":null,"FYPO:0000619":null,"FYPO:0000644":null,"FYPO:0000648":null,"FYPO:0000671":null,"FYPO:0000674":null,"FYPO:0000708":null,"FYPO:0000714":null,"FYPO:0000719":null,"FYPO:0000726":null,"FYPO:0000729":null,"FYPO:0000731":null,"FYPO:0000747":null,"FYPO:0000760":null,"FYPO:0000815":null,"FYPO:0000841":null,"FYPO:0001007":null,"FYPO:0001012":null,"FYPO:0001038":null,"FYPO:0001122":null,"FYPO:0001132":null,"FYPO:0001214":null,"FYPO:0001234":null,"FYPO:0001327":null,"FYPO:0001355":null,"FYPO:0001357":null,"FYPO:0001369":null,"FYPO:0001370":null,"FYPO:0001375":null,"FYPO:0001387":null,"FYPO:0001408":null,"FYPO:0001440":null,"FYPO:0001489":null,"FYPO:0001556":null,"FYPO:0001690":null,"FYPO:0001784":null,"FYPO:0001838":null,"FYPO:0001877":null,"FYPO:0001956":null,"FYPO:0001971":null,"FYPO:0002026":null,"FYPO:0002033":null,"FYPO:0002058":null,"FYPO:0002061":null,"FYPO:0002227":null,"FYPO:0002380":null,"FYPO:0002678":null,"FYPO:0002680":null,"FYPO:0002870":null,"FYPO:0002998":null,"FYPO:0003315":null,"FYPO:0003535":null,"FYPO:0003657":null,"FYPO:0003727":null,"FYPO:0003738":null,"FYPO:0003751":null,"FYPO:0003779":null,"FYPO:0003780":null,"FYPO:0003946":null,"FYPO:0003973":null,"FYPO:0003976":null,"FYPO:0004105":null,"FYPO:0004165":null,"FYPO:0004205":null,"FYPO:0004293":null,"FYPO:0004295":null,"FYPO:0004318":null,"FYPO:0004481":null,"FYPO:0004573":null,"FYPO:0004683":null,"FYPO:0004693":null,"FYPO:0004695":null,"FYPO:0004718":null,"FYPO:0004890":null,"FYPO:0004982":null,"FYPO:0005152":null,"FYPO:0005231":null,"FYPO:0005503":null,"FYPO:0005705":null,"FYPO:0005957":null,"FYPO:0006054":null,"FYPO:0006433":null,"FYPO:0006557":null,"FYPO:0006616":null,"FYPO:0006945":null,"FYPO:0006989":null,"FYPO:0007073":null,"FYPO:0007177":null,"FYPO:0007363":null,"FYPO:0007521":null,"FYPO:0007522":null,"FYPO:0007701":null,"FYPO:0007770":null,"FYPO:0007771":null,"FYPO:0007772":null,"FYPO:0007773":null,"FYPO:0007774":null,"FYPO:0007775":null,"FYPO:0007776":null,"FYPO:0007777":null,"FYPO:0007778":null,"FYPO:0007779":null,"FYPO:0007780":null,"FYPO:0007782":null,"FYPO:0007783":null,"FYPO:0007789":null,"FYPO:0007790":null,"FYPO:0007801":null,"FYPO:0007824":null,"FYPO:0008029":null,"FYPO:0008031":null,"FYPO:0008046":null,"FYPO:0009111":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null,"GO:0000815":null}}


id: GO:0033776
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + NADPH + O2 + phenylacetone = benzyl acetate + H2O + NADP+.","definition_xrefs":["EC:1.14.13.92","RHEA:10124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"phenylacetone monooxygenase activity","secondary_identifiers":["MetaCyc:1.14.13.92-RXN","KEGG_REACTION:R07201"],"synonyms":[{"name":"PAMO","type":"related"},{"name":"phenylacetone,NADPH:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0033776"}


id: PBO:0062101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily B member 1","termid":"PBO:0062101"}


id: FYPO:0001886
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which haploid cells undergo meiotic nuclear division and attempt to sporulate. Haploid meiosis often results in the formation of a structure that resembles an azygotic ascus. Spores produced from a haploid cell have poor viability and appear to contain only 1/2C DNA on average.","definition_xrefs":["DOI:10.1007/BF00332932","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle entry","termid":"FYPO:0009006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"meiotic cell cycle entry and sporulation in haploid","secondary_identifiers":["FYPO:0001887"],"synonyms":[{"name":"haploid meiosis","type":"related"},{"name":"haploid sporulation","type":"related"},{"name":"meiosis in haploid","type":"related"},{"name":"meiotic nuclear division and sporulation in haploid","type":"narrow"},{"name":"sporulation in haploid","type":"related"},{"name":"untimely meiosis","type":"broad"}],"termid":"FYPO:0001886"}


id: PBO:0027979
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_cellular_response_to_cadmium_ion","termid":"PBO:0027979"}


id: PBO:0084712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane half-type ABC transporter; required for respiratory growth at high temperature; localizes to vacuole membrane in response to H2O2; similar to human TAP1 and TAP2 implicated in bare lymphocyte syndrome and Wegener-like granulomatosis","termid":"PBO:0084712"}


id: MONDO:0037002
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, circumscribed fibroepithelial neoplasm arising from the breast and rarely the prostate gland. It is characterized by the presence of epithelial structures which are arranged in clefts and by a hypercellular mesenchymal stroma which is organized in leaf-like structures. There is no evidence of cellular atypia or sarcomatous features.","definition_xrefs":["NCIT:C4274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phyllodes tumor","termid":"MONDO:0005078"},{"relation_name":"is_a","term_name":"benign neoplasm","termid":"MONDO:0005165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign phyllodes tumor","secondary_identifiers":["MEDGEN:87254","UMLS:C0334501","ICDO:9020/0"],"synonyms":[{"name":"benign cystosarcoma phyllodes","type":"exact"},{"name":"benign phyllodes neoplasm","type":"exact"},{"name":"benign phyllodes tumor","type":"exact"},{"name":"phyllodes tumor, benign","type":"exact"}],"termid":"MONDO:0037002","xrefs":{"Monarch":{"xref_id":"0037002"}}}


id: MONDO:0018533
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Undifferentiated carcinoma of liver and intrahepatic biliary tract is an extremely rare epithelial tumor of the liver and biliary tract which presents heterogenous histological findings and not yet fully defined clinicopathological characteristics. Patients usually present with nonspecific signs and symptoms, such as abdominal pain, nausea, vomiting, anorexia, weight loss and/or jaundice. Invasive growth, high metastatic potential and a rapid clinical course are typically associated.","definition_xrefs":["Orphanet:424970"],"direct_ancestors":[{"relation_name":"is_a","term_name":"undifferentiated carcinoma","termid":"MONDO:0005617"},{"relation_name":"is_a","term_name":"carcinoma of liver and intrahepatic biliary tract","termid":"MONDO:0018531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992","MONDO:0002515"],"is_obsolete":false,"name":"undifferentiated carcinoma of liver and intrahepatic biliary tract","secondary_identifiers":["MEDGEN:1656437","UMLS:C4749401","GARD:21788"],"synonyms":[{"name":"undifferentiated carcinoma of liver and IBT","type":"exact"}],"termid":"MONDO:0018533","xrefs":{"Monarch":{"xref_id":"0018533"}}}


id: PBO:0005124
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Set1 mediated H3 K4 methylation is preferentially enriched at euchromatic loci","termid":"PBO:0005124"}


id: GO:0090471
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 9,9',15-tri-cis-zeta-carotene = 9,9'-di-cis-zeta-carotene.","definition_xrefs":["RHEA:30967"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis-trans isomerase activity","termid":"GO:0016859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"9,15,9'-tri-cis-zeta-carotene isomerase activity","secondary_identifiers":["EC:5.2.1.12","MetaCyc:RXN-11354"],"synonyms":[{"name":"9,15,9'-tricis-zeta-carotene cis-trans-isomerase","type":"related"}],"termid":"GO:0090471"}


id: GO:0018775
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate + H2O = 2-oxopent-4-enoate + formate + H+.","definition_xrefs":["RHEA:14549"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-hydroxymuconate-semialdehyde hydrolase activity","secondary_identifiers":["MetaCyc:3.7.1.9-RXN","UM-BBD_enzymeID:r1671","EC:3.7.1.9"],"synonyms":[{"name":"2-hydroxymuconate-semialdehyde formylhydrolase activity","type":"related"},{"name":"2-hydroxymuconic semialdehyde hydrolase activity","type":"related"},{"name":"HMSH","type":"related"},{"name":"HOD hydrolase activity","type":"related"}],"termid":"GO:0018775"}


id: PBO:0040596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAG cochaperone 1","termid":"PBO:0040596"}


id: PBO:0038479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily B member 4","termid":"PBO:0038479"}


id: PBO:0040330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit c locus 1 pseudogene 5","termid":"PBO:0040330"}


id: PR:Q9UUH4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- erg25 gene.","definition_xrefs":["UniProtKB:Q9UUH4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylsterol monooxygenase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC630.08c","synonyms":[{"name":"C-4 methylsterol oxidase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-erg25","type":"exact"}],"termid":"PR:Q9UUH4"}


id: PBO:0035806
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H4-K16_acetylation_at_boundary_element_IRC1L_during_vegetative_growth","termid":"PBO:0035806"}


id: PBO:0036247
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human COQ4","termid":"PBO:0036247"}


id: RO:0002491
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x existence starts and ends during y if and only if the start of x is part of y and the end of x is part of y. Formally: x existence starts and ends during y iff α(x) >= α(y) & α(x) <= ω(y) & ω(x) <= ω(y) & ω(x) >= α(y)","direct_ancestors":[{"relation_name":"is_a","term_name":"existence_starts_during","termid":"RO:0002488"},{"relation_name":"is_a","term_name":"existence_ends_during","termid":"RO:0002492"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"existence_starts_and_ends_during","termid":"RO:0002491"}


id: MONDO:0858997
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cancer","termid":"MONDO:0004992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cancer of unknown primary site","secondary_identifiers":["UMLS:C0220647","MEDGEN:113094","Orphanet:631251","NCIT:C8566"],"termid":"MONDO:0858997","xrefs":{"Monarch":{"xref_id":"0858997"}}}


id: MONDO:0060568
data:
  {"annotated_genes":["SJAG_01653","SJAG_04038"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85628,85629],"is_not":false,"summary":null,"term":"MONDO:0060568"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01653":null,"SJAG_04038":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Pilarowski-Bjornsson syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1619150","GARD:17970","OMIM:617682","Orphanet:529965","UMLS:C4540131"],"synonyms":[{"name":"PILBOS","type":"related"},{"name":"Pilarowski-Bjornsson syndrome","type":"exact"},{"name":"developmental delay and speech apraxia with or without seizures","type":"related"}],"termid":"MONDO:0060568","terms_by_termid":{"MONDO:0060568":null},"xrefs":{"Monarch":{"xref_id":"0060568"}}}


id: GO:0031522
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transmembrane protein complex involved in the translocation of proteins across the cytoplasmic membrane. In Gram-negative bacteria, Sec-translocated proteins are subsequently secreted via the type II, IV, or V secretion systems. Sec complex components include SecA, D, E, F, G, Y and YajC.","definition_xrefs":["PMID:15223057","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cell envelope Sec protein transport complex","synonyms":[{"name":"Sec complex","type":"broad"},{"name":"Sec secretion complex","type":"narrow"},{"name":"Sec translocation complex","type":"narrow"},{"name":"plasma membrane Sec complex","type":"related"}],"termid":"GO:0031522"}


id: GO:0017000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"antibiotic metabolic process","termid":"GO:0016999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antibiotic biosynthetic process","synonyms":[{"name":"antibiotic anabolism","type":"exact"},{"name":"antibiotic biosynthesis","type":"exact"},{"name":"antibiotic formation","type":"exact"},{"name":"antibiotic synthesis","type":"exact"}],"termid":"GO:0017000"}


id: PBO:0081920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF888 antisense RNA 1","termid":"PBO:0081920"}


id: MONDO:0002821
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid gland follicular carcinoma","termid":"MONDO:0005034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"trabecular follicular adenocarcinoma","secondary_identifiers":["DOID:3964","UMLS:C0334327","MEDGEN:569646"],"synonyms":[{"name":"follicular adenocarcinoma, trabecular","type":"exact"},{"name":"follicular adenocarcinoma, trabecular (morphologic abnormality)","type":"exact"},{"name":"trabecular follicular carcinoma","type":"exact"}],"termid":"MONDO:0002821","xrefs":{"Monarch":{"xref_id":"0002821"}}}


id: PBO:0068037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 342","termid":"PBO:0068037"}


id: MONDO:0100373
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute myeloid leukemia that has the chromosomal anomaly inv(16)(p13.1;q22). (A chromosomal inversion that involves chromosome 16. It is associated with the development of acute myeloid leukemia CBFB-MYH11, acute myelomonocytic leukemia with abnormal eosinophils, and granulocytic sarcoma.)","definition_xrefs":["NCIT:C36373"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004992","MONDO:0005046"],"is_obsolete":false,"name":"acute myeloid leukemia, inv(16)(p13.1;q22)","secondary_identifiers":["NCIT:C9018"],"synonyms":[{"name":"AML, inv(16)(p13.1;q22)","type":"exact"},{"name":"AML, inv(16)(p13.1;q22.1)","type":"exact"},{"name":"AML, inv(16)(p13.1q22)","type":"exact"},{"name":"AML, inv(16)(p13.1q22.1)","type":"exact"},{"name":"AML, inv(16)(p13;q22)","type":"exact"},{"name":"AML, inv(16)(p13q22)","type":"exact"}],"termid":"MONDO:0100373","xrefs":{"Monarch":{"xref_id":"0100373"}}}


id: GO:0008132
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of proteins, including elastin.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete pancreatic elastase activity (obsolete GO:0008132)","synonyms":[{"name":"pancreatic elastase activity","type":"exact"}],"termid":"GO:0008132"}


id: PATO:0001707
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavioural activity","termid":"PATO:0002265"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"behavioural active","termid":"PATO:0001707"}


id: PBO:0029773
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_mixed_population_including_spores,_germinated_spores_and_cells_with_abnormal_morphology_(obsolete_FYPO:0002466)","termid":"PBO:0029773"}


id: PBO:0013451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orthologous to S. cerevisiae YOR074C qualifier=SPAC15E1.04,C-term","termid":"PBO:0013451"}


id: PATO:0001002
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001002 alternation value (obsolete PATO:0001002)","termid":"PATO:0001002"}


id: PBO:0054506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1906","termid":"PBO:0054506"}


id: PBO:0036445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E1 Atg8 and Atg12 E1 activating enzyme Atg7","termid":"PBO:0036445"}


id: PBO:0089879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit Emc4","termid":"PBO:0089879"}


id: PBO:0048462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP cyclohydrolase I feedback regulator","termid":"PBO:0048462"}


id: GO:1904340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dopaminergic neuron differentiation.","definition_xrefs":["PMID:15522889","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neuron differentiation","termid":"GO:0045666"},{"relation_name":"is_a","term_name":"regulation of dopaminergic neuron differentiation","termid":"GO:1904338"},{"relation_name":"positively_regulates","term_name":"dopaminergic neuron differentiation","termid":"GO:0071542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dopaminergic neuron differentiation","synonyms":[{"name":"activation of dopaminergic neuron differentiation","type":"narrow"},{"name":"up regulation of dopaminergic neuron differentiation","type":"exact"},{"name":"up-regulation of dopaminergic neuron differentiation","type":"exact"},{"name":"upregulation of dopaminergic neuron differentiation","type":"exact"}],"termid":"GO:1904340"}


id: PBO:0114520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Set1C complex WD repeat subunit Swd1","termid":"PBO:0114520"}


id: GO:0042204
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any s-triazine compound. These compounds include many pesticides of widespread use in agriculture, and are characterized by a symmetrical hexameric ring consisting of alternating carbon and nitrogen atoms.","definition_xrefs":["UM-BBD_pathwayID:tria"],"direct_ancestors":[{"relation_name":"is_a","term_name":"s-triazine compound metabolic process","termid":"GO:0018965"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"s-triazine compound catabolic process","synonyms":[{"name":"s-triazine compound breakdown","type":"exact"},{"name":"s-triazine compound catabolism","type":"exact"},{"name":"s-triazine compound degradation","type":"exact"}],"termid":"GO:0042204"}


id: PR:Q9UTH9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA-dihydrouridine synthase 3-like that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01833"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-dihydrouridine(47) synthase [NAD(P)(+)] (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16.04","secondary_identifiers":["UniProtKB:Q9UTH9"],"synonyms":[{"name":"Spom972h-DUS3L","type":"exact"},{"name":"tRNA-dihydrouridine synthase 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTH9"}


id: PBO:0117117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC7A10 antisense RNA 1","termid":"PBO:0117117"}


id: PBO:0051864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur cluster assembly enzyme pseudogene 1","termid":"PBO:0051864"}


id: PBO:0054193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1568","termid":"PBO:0054193"}


id: PBO:0087488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of COMPASS (Set1C) complex; COMPASS methylates Lys4 of histone H3 and functions in silencing at telomeres; has a C-terminal Sdc1 Dpy-30 Interaction (SDI) domain that mediates binding to Sdc1p; similar to trithorax-group protein ASH2L","termid":"PBO:0087488"}


id: GO:1904113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of muscle filament sliding.","definition_xrefs":["GOC:kmv","GO_REF:0000058","GOC:TermGenie","PMID:25717181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle filament sliding","termid":"GO:0032971"},{"relation_name":"is_a","term_name":"negative regulation of muscle contraction","termid":"GO:0045932"},{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"negatively_regulates","term_name":"muscle filament sliding","termid":"GO:0030049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of muscle filament sliding","synonyms":[{"name":"down regulation of muscle filament sliding","type":"exact"},{"name":"down-regulation of muscle filament sliding","type":"exact"},{"name":"downregulation of muscle filament sliding","type":"exact"},{"name":"inhibition of muscle filament sliding","type":"narrow"}],"termid":"GO:1904113"}


id: PBO:0005863
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"this may be a none coding RNA","termid":"PBO:0005863"}


id: PBO:0090507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, DDB1 and CUL4-associated factor Dca7","termid":"PBO:0090507"}


id: FYPO:0003792
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which generation of double-strand breaks at defined hotspots throughout the genome during meiosis I is increased at the silent mating-type cassettes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic recombination at silent mating-type cassette","termid":"FYPO:0003346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000293","FYPO:0005447","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"increased meiotic DNA double-strand break formation at silent mating-type cassette","synonyms":[{"name":"increased meiotic DNA double-strand break formation at mating-type region heterochromatin","type":"exact"}],"termid":"FYPO:0003792"}


id: PBO:0012280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIP/FAR complex FHA domain subunit Far10/Csc1","termid":"PBO:0012280"}


id: PBO:0074717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 77B","termid":"PBO:0074717"}


id: PBO:0084702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial glyoxalase II; catalyzes the hydrolysis of S-D-lactoylglutathione into glutathione and D-lactate; GLO4 has a paralog, GLO2, that arose from the whole genome duplication","termid":"PBO:0084702"}


id: RO:0002485
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"connected_to","termid":"RO:0002170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receives_input_from","termid":"RO:0002485"}


id: GO:0036139
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-histidyl-[protein] + 2-oxoglutarate + O2 = (3S)-3-hydroxy-L-histidyl-[protein] + succinate + CO2.","definition_xrefs":["PMID:21251231","RHEA:54256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"peptidyl-histidine dioxygenase activity","secondary_identifiers":["MetaCyc:RXN-22839","Reactome:R-HSA-9630967","Reactome:R-HSA-9630993","EC:1.14.11.79"],"synonyms":[{"name":"protein histidyl hydroxylase","type":"broad"},{"name":"protein-L-histidine (3S)-3-hydroxylase","type":"exact"}],"termid":"GO:0036139"}


id: FYPO:0005629
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein having high molecular mass due to polySUMO conjugation is greater than normal.","definition_xrefs":["PMID:26221037","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular HMW SUMO conjugate level","synonyms":[{"name":"accumulation of HMW SUMO conjugates","type":"exact"},{"name":"accumulation of high molecular mass SUMO conjugates","type":"exact"},{"name":"accumulation of high molecular weight SUMO conjugates","type":"exact"},{"name":"increased HMW SUMO conjugate accumulation","type":"related"},{"name":"increased cellular HMW SUMO conjugate level during mitotic cell cycle","type":"related"},{"name":"increased cellular HMW SUMO conjugate level during vegetative growth","type":"exact"},{"name":"increased cellular high molecular mass SUMO conjugate level during vegetative growth","type":"exact"},{"name":"increased cellular high molecular weight SUMO conjugate level during vegetative growth","type":"exact"}],"termid":"FYPO:0005629"}


id: FYPO:0007101
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A spindle phenotype in which the meiotic spindle is not straight, but instead forms an angle where microtubules from opposite poles interdigitate, during meiosis I.","definition_xrefs":["PomBase:mah","PMID:22292001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic spindle","termid":"FYPO:0000734"},{"relation_name":"is_a","term_name":"abnormal spindle morphology","termid":"FYPO:0003607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0002399","FYPO:0000120"],"is_obsolete":false,"name":"bent spindle during meiosis I","synonyms":[{"name":"V-shaped bipolar spindle during meiosis I","type":"exact"},{"name":"bent bipolar spindle during meiosis I","type":"exact"},{"name":"bent meiotic spindle during meiosis I","type":"exact"},{"name":"bent spindle during first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0007101"}


id: PBO:0050657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 90 alpha family class B member 7, pseudogene","termid":"PBO:0050657"}


id: MONDO:0004517
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tuberculosis that involves the ureter.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ureteral disorder","termid":"MONDO:0001926"},{"relation_name":"is_a","term_name":"bacterial urinary tract infection","termid":"MONDO:0005247"},{"relation_name":"is_a","term_name":"urogenital tuberculosis","termid":"MONDO:0006002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ureter tuberculosis","secondary_identifiers":["ICD9:016.2","DOID:827","MEDGEN:509076","ICD9:016.20","SCTID:81359005","UMLS:C0152800"],"synonyms":[{"name":"tuberculosis of ureter","type":"exact"},{"name":"ureter tuberculosis","type":"exact"}],"termid":"MONDO:0004517","xrefs":{"Monarch":{"xref_id":"0004517"}}}


id: PBO:0069660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 937, pseudogene","termid":"PBO:0069660"}


id: GO:0046366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of allose, allo-hexose, an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete allose biosynthetic process (obsolete GO:0046366)","synonyms":[{"name":"allose anabolism","type":"exact"},{"name":"allose biosynthesis","type":"exact"},{"name":"allose formation","type":"exact"},{"name":"allose synthesis","type":"exact"}],"termid":"GO:0046366"}


id: PBO:0036381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved eukaryotic protein, human CXorf56 and C15orf40 ortholog","termid":"PBO:0036381"}


id: CHEBI:16356
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3',5'-cyclic GMP","termid":"CHEBI:16356"}


id: PBO:0053100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late cornified envelope 6A","termid":"PBO:0053100"}


id: FYPO:0002434
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form actin cables that are shorter than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cable morphology","termid":"FYPO:0002031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0004803","FYPO:0000002"],"is_obsolete":false,"name":"short actin cables","synonyms":[{"name":"decreased actin cable length","type":"exact"},{"name":"short actin cables during mitotic cell cycle","type":"related"},{"name":"short actin cables during vegetative growth","type":"exact"},{"name":"short formin-nucleated actin cables","type":"exact"}],"termid":"FYPO:0002434"}


id: MONDO:0003131
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete congenital mesoblastic nephroma (obsolete MONDO:0003131)","termid":"MONDO:0003131","xrefs":{"Monarch":{"xref_id":"0003131"}}}


id: PR:Q9P3V7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1348.03 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P3V7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0742 protein C1348.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1348.03","synonyms":[{"name":"Spom972h-SPBC1348.03","type":"exact"}],"termid":"PR:Q9P3V7"}


id: GO:0106083
data:
  {"annotated_genes":["SJAG_01538","SJAG_04558","SJAG_05196"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[113145],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034993"},{"annotations":[97046,103132],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990612"}]},"cv_name":"cellular_component","definition":"Any protein complex that is part of the nuclear membrane.","definition_xrefs":["GOC:lnp","PMID:28356353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nuclear envelope","termid":"GO:0005635"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01538":null,"SJAG_04558":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"nuclear membrane protein complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106083","terms_by_termid":{"GO:0034993":null,"GO:1990612":null}}


id: GO:0034171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 11 signaling pathway.","definition_xrefs":["PMID:16551253","PMID:17328678","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039531"},{"relation_name":"regulates","term_name":"toll-like receptor 11 signaling pathway","termid":"GO:0034170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of toll-like receptor 11 signaling pathway","synonyms":[{"name":"regulation of TLR11 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 11 signalling pathway","type":"exact"}],"termid":"GO:0034171"}


id: PBO:0038375
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-directly_negatively_regulated_by","termid":"PBO:0038375"}


id: GO:0035073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The onset of prepupal development when the larval stops crawling, everts its spiracles and the larval cuticle becomes the puparium or pupal case that surrounds the organism for the duration of metamorphosis.","definition_xrefs":["GOC:bf","ISBN:0879694238","PMID:9409683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"prepupal development","termid":"GO:0035210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pupariation","synonyms":[{"name":"puparium biosynthesis","type":"exact"},{"name":"puparium formation","type":"exact"}],"termid":"GO:0035073"}


id: MONDO:0008890
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Progressive bulbar palsy involves the brain stem. The brain stem is the part of the brain needed for swallowing, speaking, chewing, and other functions. Signs and symptoms of progressive bulbar palsy include difficulty swallowing, weak jaw and facial muscles, progressive loss of speech, and weakening of the tongue. Additional symptoms include less prominent weakness in the arms and legs, and outbursts of laughing or crying (called emotional lability). Progressive bulbar palsy is considered a variant form of amyotrophic lateral sclerosis (ALS). Many people with progressive bulbar palsy later develop ALS. While there is no cure for progressive bulbar palsy or for ALS, doctors can treat symptoms.","direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve palsy","termid":"MONDO:0002782"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"},{"relation_name":"is_a","term_name":"palsy","termid":"MONDO:0006496"},{"relation_name":"is_a","term_name":"riboflavin transporter deficiency","termid":"MONDO:0008891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"progressive bulbar palsy","secondary_identifiers":["ICD9:335.22","EFO:0003783","GARD:10928","DOID:681","MEDGEN:18290","MESH:D010244","NCIT:C85026","SCTID:54304004","ICD10CM:G12.22","icd11.foundation:1143049440","UMLS:C0030442"],"synonyms":[{"name":"Fazio-Londe disease","type":"narrow"},{"name":"bulbar palsy, progressive, of childhood","type":"narrow"},{"name":"progressive bulbar atrophy","type":"related"}],"termid":"MONDO:0008890","xrefs":{"Monarch":{"xref_id":"0008890"}}}


id: FYPO:0007191
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which sites at which the protein Rad52 accumulates remain present for longer than normal.","definition_xrefs":["PomBase:mah","PMID:31483748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased duration of Rad52 focus presence during vegetative growth","synonyms":[{"name":"delayed peak level of Rad52 foci during vegetative growth","type":"related"},{"name":"increased duration of Rad22 focus presence during vegetative growth","type":"exact"},{"name":"increased duration of Rad52 focus presence during mitotic cell cycle","type":"related"},{"name":"increased persistence of Rad52 foci during vegetative growth","type":"exact"},{"name":"prolonged Rad52 focus presence during vegetative growth","type":"exact"}],"termid":"FYPO:0007191"}


id: PBO:0077230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane channel like 6","termid":"PBO:0077230"}


id: PR:Q9P7N6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mgr3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7N6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPR repeat-containing protein P27G11.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP27G11.02","synonyms":[{"name":"Spom972h-mgr3","type":"exact"}],"termid":"PR:Q9P7N6"}


id: PBO:0000950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial DDHD family phospholipase (predicted)","termid":"PBO:0000950"}


id: PBO:0041339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 3 open reading frame 33","termid":"PBO:0041339"}


id: PBO:0117000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HSPB8 antisense RNA 1","termid":"PBO:0117000"}


id: GO:0034023
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate.","definition_xrefs":["EC:5.4.99.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"5-(carboxyamino)imidazole ribonucleotide mutase activity","secondary_identifiers":["MetaCyc:RXN0-743","RHEA:13193"],"synonyms":[{"name":"5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole carboxymutase activity","type":"related"},{"name":"N5-CAIR mutase activity","type":"related"},{"name":"N5-carboxyaminoimidazole ribonucleotide mutase activity","type":"related"},{"name":"PurE","type":"related"},{"name":"class I PurE","type":"related"}],"termid":"GO:0034023"}


id: PR:O13776
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ftp105 gene.","definition_xrefs":["UniProtKB:O13776","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubp5-interacting protein ftp105 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A5.16","synonyms":[{"name":"Down-regulated in multiple cancers 1 homolog 3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Hid-1 family protein ftp105 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ftp105","type":"exact"}],"termid":"PR:O13776"}


id: GO:0047650
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O-alkylglycerone + ATP = O-alkylglycerone phosphate + ADP + 2 H+.","definition_xrefs":["RHEA:23088","EC:2.7.1.84"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016301","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"alkylglycerone kinase activity","secondary_identifiers":["MetaCyc:ALKYLGLYCERONE-KINASE-RXN","KEGG_REACTION:R03944"],"synonyms":[{"name":"ATP:O-alkylglycerone phosphotransferase activity","type":"related"},{"name":"alkyldihydroxyacetone kinase (phosphorylating)","type":"related"},{"name":"alkyldihydroxyacetone kinase activity","type":"related"}],"termid":"GO:0047650"}


id: PBO:0040943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 14","termid":"PBO:0040943"}


id: MONDO:0014739
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the MET gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 97","secondary_identifiers":["DOID:0110539","GARD:22655","UMLS:C4084709","MEDGEN:899875","OMIM:616705"],"synonyms":[{"name":"DFNB97","type":"narrow"},{"name":"MET autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"autosomal recessive deafness 97","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 97","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in MET","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 97","type":"narrow"},{"name":"deafness, autosomal recessive 97","type":"narrow"},{"name":"deafness, autosomal recessive type 97","type":"narrow"}],"termid":"MONDO:0014739","xrefs":{"Monarch":{"xref_id":"0014739"}}}


id: MONDO:0008169
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteochondrodysplasia, rhizomelic, with callosal agenesis, thrombocytopenia, hydrocephalus, and hypertension","secondary_identifiers":["OMIM:166990","MEDGEN:322254","UMLS:C1833688","MESH:C563478"],"synonyms":[{"name":"osteochondrodysplasia with rhizomelia, platyspondyly, callosal agenesis, thrombocytopenia, hydrocephalus, and hypertension","type":"related"},{"name":"osteochondrodysplasia, rhizomelic, with callosal agenesis, thrombocytopenia, hydrocephalus, and hypertension","type":"exact"}],"termid":"MONDO:0008169","xrefs":{"Monarch":{"xref_id":"0008169"}}}


id: PBO:0081911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 878","termid":"PBO:0081911"}


id: GO:1905918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of CoA-transferase activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","GOC:aruk","PMID:20164328","GOC:bc"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of CoA-transferase activity (obsolete GO:1905918)","termid":"GO:1905918"}


id: PBO:0091970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purine nucleoside transmembrane transporter","termid":"PBO:0091970"}


id: PBO:0044859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delta 4-desaturase, sphingolipid 2","termid":"PBO:0044859"}


id: GO:0106238
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction:peregrinol diphosphate = all-trans-geranylgeranyl diphosphate + H2O.","definition_xrefs":["PMID:24990389","RHEA:54652","GOC:emb","PMID:29315936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"peregrinol diphosphate synthase activity","secondary_identifiers":["EC:4.2.1.174"],"termid":"GO:0106238"}


id: GO:0000289
data:
  {"annotated_genes":["SJAG_01910","SJAG_01053","SJAG_04407","SJAG_01436","SJAG_02540","SJAG_00966","SJAG_02370","SJAG_03597","SJAG_00285","SJAG_04427","SJAG_01944","SJAG_03883","SJAG_00686","SJAG_04682","SJAG_04350","SJAG_02383","SJAG_03113","SJAG_00343","SJAG_02808"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70709,74127,75883,77941,79303,80064,90127,91121,92841,92939,94671,95840,115961,116903],"is_not":false,"summary":null,"term":"GO:0000289"},{"annotations":[92008],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0060212"},{"annotations":[90038,73144,105238],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0060213"},{"annotations":[98837],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0060211"}]},"cv_name":"biological_process","definition":"Shortening of the poly(A) tail of a nuclear-transcribed mRNA from full length to an oligo(A) length.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear-transcribed mRNA catabolic process","termid":"GO:0000956"},{"relation_name":"part_of","term_name":"nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay","termid":"GO:0000288"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00285":null,"SJAG_00343":null,"SJAG_00686":null,"SJAG_00966":null,"SJAG_01053":null,"SJAG_01436":null,"SJAG_01910":null,"SJAG_01944":null,"SJAG_02370":null,"SJAG_02383":null,"SJAG_02540":null,"SJAG_02808":null,"SJAG_03113":null,"SJAG_03597":null,"SJAG_03883":null,"SJAG_04350":null,"SJAG_04407":null,"SJAG_04427":null,"SJAG_04682":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0016071","GO:0008150"],"is_obsolete":false,"name":"nuclear-transcribed mRNA poly(A) tail shortening","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-429947"],"synonyms":[{"name":"3' to 5' mRNA deadenylation","type":"related"},{"name":"mRNA deadenylation","type":"related"},{"name":"nuclear mRNA poly(A) tail shortening","type":"related"}],"termid":"GO:0000289","terms_by_termid":{"GO:0000289":null,"GO:0060211":null,"GO:0060212":null,"GO:0060213":null}}


id: MONDO:0012707
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"febrile seizures, familial","termid":"MONDO:0000032"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial febrile seizures 9","secondary_identifiers":["OMIM:611634","UMLS:C1968846","MEDGEN:369868","MESH:C566901","DOID:0111303"],"synonyms":[{"name":"FEB9","type":"exact"},{"name":"febrile convulsions, familial, 9","type":"related"},{"name":"febrile seizures, familial, 9","type":"related"}],"termid":"MONDO:0012707","xrefs":{"Monarch":{"xref_id":"0012707"}}}


id: PR:O43071
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pre-mRNA-processing factor 17 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03361","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-processing factor 17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC6B1.10","secondary_identifiers":["UniProtKB:O43071"],"synonyms":[{"name":"Spom972h-CDC40","type":"exact"}],"termid":"PR:O43071"}


id: SO:0001934
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A repeat_region containing repeat_units of 1 bp that is repeated multiple times in tandem.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tandem_repeat","termid":"SO:0000705"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monomeric_repeat","synonyms":[{"name":"monomeric repeat","type":"exact"}],"termid":"SO:0001934"}


id: GO:0061088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency, or extent of sequestering of zinc ion. Sequestering of zinc ion is the process of binding or confining zinc ions such that they are separated from other components of a biological system.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of sequestering of zinc ion (obsolete GO:0061088)","termid":"GO:0061088"}


id: PBO:0071286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 9","termid":"PBO:0071286"}


id: PBO:0040609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromo adjacent homology domain containing 1","termid":"PBO:0040609"}


id: PBO:0080224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vir like m6A methyltransferase associated","termid":"PBO:0080224"}


id: PBO:0016995
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae PMP3","termid":"PBO:0016995"}


id: GO:0035220
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Progression of the wing disc over time, from its initial formation through to its metamorphosis to form adult structures including the wing hinge, wing blade and pleura.","definition_xrefs":["ISBN:0879694238","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imaginal disc development","termid":"GO:0007444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"wing disc development","termid":"GO:0035220"}


id: GO:0003901
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA-directed RNA polymerase II activity (obsolete GO:0003901)","synonyms":[{"name":"DNA-directed RNA polymerase II activity","type":"exact"}],"termid":"GO:0003901"}


id: MONDO:0009896
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polymyoclonus, infantile","secondary_identifiers":["MEDGEN:376647","OMIM:263550","MESH:C535524","UMLS:C1849731"],"synonyms":[{"name":"polymyoclonus, infantile","type":"exact"}],"termid":"MONDO:0009896","xrefs":{"Monarch":{"xref_id":"0009896"}}}


id: PBO:0076881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 30","termid":"PBO:0076881"}


id: MONDO:0700179
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteosarcoma that occurs in a cat.","definition_xrefs":["NCIT:C132825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feline neoplasm","termid":"MONDO:0700175"},{"relation_name":"is_a","term_name":"osteosarcoma, non-human animal","termid":"MONDO:1010212"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feline osteosarcoma","termid":"MONDO:0700179","xrefs":{"Monarch":{"xref_id":"0700179"}}}


id: PBO:0076407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 4b","termid":"PBO:0076407"}


id: PR:Q9P7J6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1702 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7J6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S17-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC24B10.09","synonyms":[{"name":"Spom972h-rps1702","type":"exact"}],"termid":"PR:Q9P7J6"}


id: MOD:01126
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'phos Cytidinyl","termid":"MOD:01126"}


id: GO:0002232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of an immune cell in response to an external stimulus contributing to an inflammatory response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte migration involved in inflammatory response","termid":"GO:0002523"},{"relation_name":"is_a","term_name":"leukocyte chemotaxis","termid":"GO:0030595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte chemotaxis involved in inflammatory response","synonyms":[{"name":"immune cell chemotaxis during inflammatory response","type":"related"},{"name":"leucocyte chemotaxis during inflammatory response","type":"related"},{"name":"leukocyte chemotaxis during inflammatory response","type":"related"}],"termid":"GO:0002232"}


id: PBO:0069654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 931, pseudogene","termid":"PBO:0069654"}


id: GO:1904138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of convergent extension involved in notochord morphogenesis.","definition_xrefs":["GOC:dph","GOC:TermGenie","PMID:24892953","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of convergent extension involved in gastrulation","termid":"GO:1904105"},{"relation_name":"is_a","term_name":"regulation of convergent extension involved in notochord morphogenesis","termid":"GO:1904136"},{"relation_name":"positively_regulates","term_name":"convergent extension involved in notochord morphogenesis","termid":"GO:1904126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of convergent extension involved in notochord morphogenesis","synonyms":[{"name":"activation of convergent extension involved in notochord morphogenesis","type":"narrow"},{"name":"up regulation of convergent extension involved in notochord morphogenesis","type":"exact"},{"name":"up-regulation of convergent extension involved in notochord morphogenesis","type":"exact"},{"name":"upregulation of convergent extension involved in notochord morphogenesis","type":"exact"}],"termid":"GO:1904138"}


id: FYPO:0002659
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of trehalose 6-phosphate measured in a cell is higher than normal when the cell is subject to heat shock.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular trehalose 6-phosphate level","termid":"FYPO:0002658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular trehalose 6-phosphate level during heat shock","synonyms":[{"name":"increased cellular trehalose 6-phosphate level during heat shock during mitotic cell cycle","type":"related"},{"name":"increased cellular trehalose 6-phosphate level during vegetative growth and during heat shock","type":"exact"},{"name":"increased cellular trehalose-6P level during heat shock","type":"exact"},{"name":"increased trehalose 6-phosphate accumulation during heat shock","type":"related"}],"termid":"FYPO:0002659"}


id: SO:0000979
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-protein_coding gene that encodes a guide_RNA.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non_protein_coding","termid":"SO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gRNA_encoding","synonyms":[{"name":"gRNA encoding","type":"exact"}],"termid":"SO:0000979"}


id: MOD:00111
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-farnesyl-L-cysteine.","definition_xrefs":["PubMed:1409665","PubMed:1872463","DeltaMass:293","OMSSA:42","PubMed:15609361","PubMed:2684976","RESID:AA0102","Unimod:44#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"farnesylated residue","termid":"MOD:00437"},{"relation_name":"is_a","term_name":"isoprenylated cysteine","termid":"MOD:01110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"},{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155","MOD:00905"],"is_obsolete":false,"name":"S-farnesyl-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid","type":"exact"},{"name":"2-amino-3-(3,7,11-trimethyl-2,6,10-dodecatrienylthio)propanoic acid","type":"exact"},{"name":"Farnesyl","type":"related"},{"name":"Farnesylation","type":"related"},{"name":"LIPID S-farnesyl cysteine","type":"exact"},{"name":"S-farnesyl Cystenyl","type":"exact"},{"name":"S-farnesyl-L-cysteine","type":"exact"},{"name":"SFarnCys","type":"exact"},{"name":"farnesylationc","type":"exact"}],"termid":"MOD:00111"}


id: PBO:0063890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class P pseudogene 3","termid":"PBO:0063890"}


id: GO:1901540
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ent-pimara-8(14),15-diene.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene catabolic process","termid":"GO:0046247"},{"relation_name":"is_a","term_name":"ent-pimara-8(14),15-diene metabolic process","termid":"GO:1901539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"ent-pimara-8(14),15-diene catabolic process","synonyms":[{"name":"ent-pimara-8(14),15-diene breakdown","type":"exact"},{"name":"ent-pimara-8(14),15-diene catabolism","type":"exact"},{"name":"ent-pimara-8(14),15-diene degradation","type":"exact"}],"termid":"GO:1901540"}


id: GO:0018079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of a halogen to a protein amino acid.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein halogenation (obsolete GO:0018079)","synonyms":[{"name":"protein amino acid halogenation","type":"exact"}],"termid":"GO:0018079"}


id: GO:0017110
data:
  {"annotated_genes":["SJAG_01595","SJAG_03676","SJAG_03362"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99853],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044715"},{"annotations":[114265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043262"},{"annotations":[114269],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036384"},{"annotations":[76826,70890],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004382"},{"annotations":[76821,70884],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045134"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a nucleoside diphosphate + H2O = a nucleoside monophosphate + phosphate.","definition_xrefs":["EC:3.6.1.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01595":null,"SJAG_03362":null,"SJAG_03676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"nucleoside diphosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-8851129","Reactome:R-HSA-8851550","MetaCyc:NUCLEOSIDE-DIPHOSPHATASE-RXN","Reactome:R-HSA-8850854","Reactome:R-HSA-8851356","Reactome:R-HSA-8851225","Reactome:R-HSA-8851396","RHEA:36799"],"synonyms":[{"name":"NDPase activity","type":"related"},{"name":"apyrase activity","type":"broad"},{"name":"inosine 5'-diphosphatase","type":"narrow"},{"name":"inosine diphosphatase","type":"narrow"},{"name":"nucleoside 5'-diphosphatase activity","type":"related"},{"name":"nucleoside diphosphatase activity","type":"exact"},{"name":"nucleoside diphosphate phosphohydrolase activity","type":"related"},{"name":"nucleoside-diphosphatase activity","type":"exact"},{"name":"nucleoside-diphosphate phosphohydrolase activity","type":"related"},{"name":"type B nucleoside diphosphatase","type":"narrow"},{"name":"type L nucleoside diphosphatase","type":"narrow"}],"termid":"GO:0017110","terms_by_termid":{"GO:0004382":null,"GO:0036384":null,"GO:0043262":null,"GO:0044715":null,"GO:0045134":null}}


id: GO:0061811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NAD = cyclic ADP-ribose + nicotinamide.","definition_xrefs":["PMID:11866528","GOC:dph","GOC:PARL","GOC:pad"],"gene_count":0,"genotype_count":0,"name":"obsolete ADP-ribosyl cyclase activity (obsolete GO:0061811)","termid":"GO:0061811"}


id: FYPO:0004020
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mitochondrial electron transport from succinate to ubiquinone is decreased.","definition_xrefs":["GO:0006121","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular respiration","termid":"FYPO:0000342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased mitochondrial electron transport, succinate to ubiquinone","synonyms":[{"name":"decreased mitochondrial electron transport, succinate to ubiquinone, during mitotic cell cycle","type":"related"},{"name":"decreased mitochondrial electron transport, succinate to ubiquinone, during vegetative growth","type":"exact"},{"name":"decreased succinate cytochrome c oxidoreductase","type":"related"},{"name":"decreased succinate dehydrogenase (ubiquinone) activity and ubiquinol-cytochrome-c reductase activity","type":"related"},{"name":"reduced mitochondrial electron transport, succinate to ubiquinone","type":"exact"}],"termid":"FYPO:0004020"}


id: GO:0046824
data:
  {"annotated_genes":["SJAG_04464","SJAG_01245","SJAG_03048","SJAG_04312","SJAG_03453","SJAG_01805","SJAG_02592"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102171,111324,94146,100763],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046827"},{"annotations":[94708,102702,91188],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042307"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of substances between the nucleus and the cytoplasm.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular transport","termid":"GO:0032388"},{"relation_name":"is_a","term_name":"regulation of nucleocytoplasmic transport","termid":"GO:0046822"},{"relation_name":"positively_regulates","term_name":"nucleocytoplasmic transport","termid":"GO:0006913"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01245":null,"SJAG_01805":null,"SJAG_02592":null,"SJAG_03048":null,"SJAG_03453":null,"SJAG_04312":null,"SJAG_04464":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006913"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006913"}],"interesting_parent_ids":["GO:0006913","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of nucleocytoplasmic transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of nucleocytoplasmic transport","type":"narrow"},{"name":"stimulation of nucleocytoplasmic transport","type":"narrow"},{"name":"up regulation of nucleocytoplasmic transport","type":"exact"},{"name":"up-regulation of nucleocytoplasmic transport","type":"exact"},{"name":"upregulation of nucleocytoplasmic transport","type":"exact"}],"termid":"GO:0046824","terms_by_termid":{"GO:0042307":null,"GO:0046827":null}}


id: GO:0035483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the liquid and liquid-suspended solid contents of the stomach exit through the pylorus into the duodenum.","definition_xrefs":["GOC:cy","ISBN:9781416032458"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastric motility","termid":"GO:0035482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gastric emptying","termid":"GO:0035483"}


id: PBO:0043690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 4I2","termid":"PBO:0043690"}


id: MONDO:0007086
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant Alport syndrome isa genetic condition characterized by kidney disease, hearing loss, and eye abnormalities. Most affected individuals experience progressive loss of kidney function, usually resulting in end-stage kidney disease. People with Alport syndrome frequently develop sensorineural hearing loss in late childhood or early adolescence. The eye abnormalities seen in this condition seldom lead to vision loss. Alport syndrome can have different patterns of inheritance.Alport syndrome has autosomal dominant inheritance in about 5 percent of cases. People with this form of Alport syndrome have one mutation in either the COL4A3 or COL4A4 gene in each cell.","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"Alport syndrome","termid":"MONDO:0018965"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005240"],"is_obsolete":false,"name":"autosomal dominant Alport syndrome","secondary_identifiers":["Orphanet:88918","UMLS:C5882663","OMIM:104200","GARD:624","MEDGEN:1848787","SCTID:717766000","DOID:0110032"],"synonyms":[{"name":"Alport syndrome 3, autosomal dominant","type":"exact"},{"name":"Alport syndrome dominant type","type":"related"},{"name":"Alport syndrome, autosomal dominant","type":"exact"},{"name":"renal failure and sensorineural hearing loss","type":"related"}],"termid":"MONDO:0007086","xrefs":{"Monarch":{"xref_id":"0007086"}}}


id: GO:0044585
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to cellobiose, a disaccharide that represents the basic repeating unit of cellulose.","definition_xrefs":["GOC:mengo_curators","GOC:tt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide binding","termid":"GO:0048030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"cellobiose binding","termid":"GO:0044585"}


id: GO:0033813
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + deacetylcephalosporin C = cephalosporin C + CoA.","definition_xrefs":["RHEA:23860","EC:2.3.1.175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-acyltransferase activity","termid":"GO:0016408"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"deacetylcephalosporin-C acetyltransferase activity","secondary_identifiers":["KEGG_REACTION:R03064","MetaCyc:2.3.1.175-RXN"],"synonyms":[{"name":"CPC acetylhydrolase activity","type":"related"},{"name":"DAC acetyltransferase activity","type":"related"},{"name":"DAC-AT","type":"related"},{"name":"acetyl coenzyme A:DAC acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:DAC O-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:DAC acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:deacetylcephalosporin-C O-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:deacetylcephalosporin-C acetyltransferase activity","type":"related"},{"name":"cefG","type":"related"},{"name":"deacetylcephalosporin C acetyltransferase activity","type":"related"}],"termid":"GO:0033813"}


id: GO:0090008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the hypoblast over time, from its formation to the mature structure. The hypoblast is a tissue formed from the inner cell mass that lies beneath the epiblast.","definition_xrefs":["GOC:sdb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hypoblast development","termid":"GO:0090008"}


id: GO:1990910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension combined with low atmospheric pressure. Hypoxia is defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95% and hypobaric is defined as atmospheric pressure below 0.74 atm (greater than 2,500 m above sea level).","definition_xrefs":["PMID:24590457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hypoxia","termid":"GO:0001666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to hypobaric hypoxia","termid":"GO:1990910"}


id: PBO:0005784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIF complex alpha subunit Tfg1 (predicted)","termid":"PBO:0005784"}


id: GO:0075233
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of spore movement on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of spore movement on or near host (obsolete GO:0075233)","termid":"GO:0075233"}


id: MONDO:0013648
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial progressive hyperpigmentation is a rare, genetic, skin pigmentation anomaly disorder characterized by irregular patches of hyperpigmented skin which present at birth or in early infancy and increase in size, number and confluence with age. Affected areas of the body include the face, neck, trunk and limbs, as well as the palms, soles, oral mucosa and conjuctiva. No hypogmentation macules are observed and no systemic diseases are associated.","definition_xrefs":["Orphanet:79146"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperpigmentation of the skin","termid":"MONDO:0019289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"familial progressive hyperpigmentation","secondary_identifiers":["OMIM:614233","SCTID:715630006","GARD:16706","icd11.foundation:1808730427"],"synonyms":[{"name":"FPH1","type":"related"},{"name":"Fph","type":"related"},{"name":"hyperpigmentation, familial progressive, 1","type":"related"},{"name":"melanosis diffusa congenita","type":"exact"},{"name":"melanosis universalis hereditaria","type":"exact"},{"name":"universal melanosis","type":"exact"}],"termid":"MONDO:0013648","xrefs":{"Monarch":{"xref_id":"0013648"}}}


id: PBO:0043863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crumbs cell polarity complex component 1","termid":"PBO:0043863"}


id: GO:0017185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydroxylation of peptidyl-lysine to form peptidyl-hydroxylysine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein hydroxylation","termid":"GO:0018126"},{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine hydroxylation","termid":"GO:0017185"}


id: PBO:0035866
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_kinetochore_during_mitosis","termid":"PBO:0035866"}


id: PBO:0068780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 17, pseudogene","termid":"PBO:0068780"}


id: PBO:0018018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homoserine kinase Thr1 (predicted)","termid":"PBO:0018018"}


id: PBO:0038881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate cyclase 7","termid":"PBO:0038881"}


id: GO:0097265
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-HETE + NADP+ = 5-oxo-ETE + NADPH + H+.","definition_xrefs":["PMID:1326548","GOC:mw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"5(S)-hydroxyeicosatetraenoic acid dehydrogenase activity","secondary_identifiers":["Reactome:R-HSA-2161776"],"synonyms":[{"name":"5(S)-HETE dehydrogenase activity","type":"exact"},{"name":"5-HETE dehydrogenase activity","type":"exact"},{"name":"5-hydroxy-eicosatetraenoic acid dehydrogenase activity","type":"exact"}],"termid":"GO:0097265"}


id: GO:0032715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-6 production","termid":"GO:0032675"},{"relation_name":"negatively_regulates","term_name":"interleukin-6 production","termid":"GO:0032635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of interleukin-6 production","secondary_identifiers":["GO:1900165","GO:0045409"],"synonyms":[{"name":"down regulation of interleukin-6 production","type":"exact"},{"name":"down-regulation of interleukin-6 production","type":"exact"},{"name":"downregulation of interleukin-6 production","type":"exact"},{"name":"inhibition of interleukin-6 production","type":"narrow"},{"name":"negative regulation of IL-6 production","type":"exact"},{"name":"negative regulation of interleukin-6 biosynthetic process","type":"narrow"},{"name":"negative regulation of interleukin-6 secretion","type":"narrow"}],"termid":"GO:0032715"}


id: FYPO:0006142
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the transition from G0 phase (quiescence) to G1 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal G0 to G1 transition","synonyms":[{"name":"normal exit from cell quiescence","type":"exact"}],"termid":"FYPO:0006142"}


id: MONDO:0019741
data:
  {"annotated_genes":["SJAG_00394","SJAG_03280"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85818],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010916"},{"annotations":[86115],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0031062"}]},"cv_name":"mondo","definition":"An instance of cystic kidney disease that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cystic kidney disease","termid":"MONDO:0002473"},{"relation_name":"is_a","term_name":"inherited kidney disorder","termid":"MONDO:0100191"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00394":null,"SJAG_03280":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"familial cystic renal disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5680285","Orphanet:93587","GARD:19228","MEDGEN:1842297"],"synonyms":[{"name":"hereditary cystic kidney disease","type":"exact"}],"termid":"MONDO:0019741","terms_by_termid":{"MONDO:0010916":null,"MONDO:0031062":null},"xrefs":{"Monarch":{"xref_id":"0019741"}}}


id: MONDO:0008708
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acrocallosal syndrome (ACS) is a polymalformative syndrome characterized by agenesis of corpus callosum (CC), distal anomalies of limbs, minor craniofacial anomalies and intellectual deficit.","definition_xrefs":["Orphanet:36"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"polydactyly-syndactyly-triphalangism","termid":"MONDO:0800066"},{"relation_name":"is_a","term_name":"KIF7-related ciliopathy","termid":"MONDO:0800463"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acrocallosal syndrome","secondary_identifiers":["SCTID:715951007","DOID:9250","UMLS:C0796147","MESH:D055673","MEDGEN:162915","GARD:5721","NCIT:C84531","icd11.foundation:1286493807","OMIM:200990"],"synonyms":[{"name":"ACLS","type":"exact"},{"name":"ACS","type":"exact"},{"name":"Joubert syndrome 12","type":"related"},{"name":"Joubert syndrome 12/15, digenic","type":"related"},{"name":"Schinzel acrocallosal syndrome","type":"exact"},{"name":"Schinzel syndrome 1","type":"exact"},{"name":"absence of corpus callosum with unusual facial appearance, mental deficiency, duplication of the halluces and polydactyly","type":"related"},{"name":"acrocallosal syndrome","type":"exact"},{"name":"acrocallosal syndrome, Schinzel type","type":"related"},{"name":"hallux Duplication, postaxial polydactyly, and absence of corpus callosum","type":"related"}],"termid":"MONDO:0008708","xrefs":{"Monarch":{"xref_id":"0008708"}}}


id: PBO:0086246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that may form an active mitochondrial KHE system; mitochondrial inner-membrane protein; non-essential gene; KHE system stands for K+/H+ exchanger system","termid":"PBO:0086246"}


id: PBO:0066252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein X-linked 2","termid":"PBO:0066252"}


id: PBO:0091318
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Recovery of STe11 expression","termid":"PBO:0091318"}


id: FYPO:0000381
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of macroautophagy is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal macroautophagy","termid":"FYPO:0000163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased macroautophagy","synonyms":[{"name":"autophagy: decreased","type":"broad"},{"name":"decreased autophagy","type":"broad"},{"name":"reduced macroautophagy","type":"exact"}],"termid":"FYPO:0000381"}


id: PBO:0041409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 6 open reading frame 163","termid":"PBO:0041409"}


id: GO:0035996
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Thin cylindrical membrane-covered projection on the surface of a rhabdomere.","definition_xrefs":["GOC:sart","PMID:14744998","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microvillus","termid":"GO:0005902"},{"relation_name":"part_of","term_name":"rhabdomere","termid":"GO:0016028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"rhabdomere microvillus","termid":"GO:0035996"}


id: PBO:0060830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nectin cell adhesion molecule 4","termid":"PBO:0060830"}


id: GO:0000716
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The identification of lesions on the actively transcribed strand of the DNA duplex as well as a small subset of lesions not recognized by the general nucleotide-excision repair pathway.","definition_xrefs":["GOC:elh","PMID:10197977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair, DNA damage recognition","termid":"GO:0000715"},{"relation_name":"part_of","term_name":"transcription-coupled nucleotide-excision repair","termid":"GO:0006283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006281"],"is_obsolete":false,"name":"transcription-coupled nucleotide-excision repair, DNA damage recognition","synonyms":[{"name":"pyrimidine-dimer repair, DNA damage recognition","type":"related"}],"termid":"GO:0000716"}


id: GO:0051648
data:
  {"annotated_genes":["SJAG_04391","SJAG_03268","SJAG_03357","SJAG_03005","SJAG_01925","SJAG_03011","SJAG_02651","SJAG_04044","SJAG_02320","SJAG_03938","SJAG_03864","SJAG_02166","SJAG_00594","SJAG_04960"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71644,118043],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0048205"},{"annotations":[118737],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0099022"},{"annotations":[88965,118028,99875,102241,66290,114463,60328,91086],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090522"},{"annotations":[116485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030050"},{"annotations":[105195,104864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047496"}]},"cv_name":"biological_process","definition":"Any process in which a vesicle or vesicles are transported to, and/or maintained in, a specific location.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle localization","termid":"GO:0051640"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00594":null,"SJAG_01925":null,"SJAG_02166":null,"SJAG_02320":null,"SJAG_02651":null,"SJAG_03005":null,"SJAG_03011":null,"SJAG_03268":null,"SJAG_03357":null,"SJAG_03864":null,"SJAG_03938":null,"SJAG_04044":null,"SJAG_04391":null,"SJAG_04960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"vesicle localization","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cytoplasmic vesicle localization","type":"exact"},{"name":"establishment and maintenance of vesicle localization","type":"exact"},{"name":"vesicle localisation","type":"exact"}],"termid":"GO:0051648","terms_by_termid":{"GO:0030050":null,"GO:0047496":null,"GO:0048205":null,"GO:0090522":null,"GO:0099022":null}}


id: PBO:0049943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIC ZBTB transcriptional repressor 1","termid":"PBO:0049943"}


id: GO:0035754
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a B cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).","definition_xrefs":["CL:0000236","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte chemotaxis","termid":"GO:0048247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"B cell chemotaxis","termid":"GO:0035754"}


id: PBO:0084211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homocitrate synthase isozyme; catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, which is the first step in the lysine biosynthesis pathway; LYS21 has a paralog, LYS20, that arose from the whole genome duplication","termid":"PBO:0084211"}


id: GO:0032793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of activity of the transcription factor CREB.","definition_xrefs":["GOC:dph","GOC:ecd","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA-binding transcription factor activity","termid":"GO:0051091"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006351","GO:0008150","GO:0010467","GO:0006355"],"is_obsolete":false,"name":"positive regulation of CREB transcription factor activity","synonyms":[{"name":"CREB activator","type":"related"},{"name":"activation of CREB","type":"exact"},{"name":"activation of CREB transcription factor","type":"exact"}],"termid":"GO:0032793"}


id: PBO:0002782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex histone acetyltransferase catalytic subunit Gcn5","termid":"PBO:0002782"}


id: GO:0030432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A wavelike sequence of involuntary muscular contraction and relaxation that passes along a tubelike structure, such as the intestine, impelling the contents onwards.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phasic smooth muscle contraction","termid":"GO:0014821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peristalsis","secondary_identifiers":["Wikipedia:Peristalsis"],"termid":"GO:0030432"}


id: PBO:0053708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 911","termid":"PBO:0053708"}


id: GO:0003292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an endocardial cushion cell becomes a cell of a cardiac septum.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiocyte differentiation","termid":"GO:0035051"},{"relation_name":"part_of","term_name":"cardiac septum development","termid":"GO:0003279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac septum cell differentiation","termid":"GO:0003292"}


id: MONDO:1010436
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atrial septal defect that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrial septal defect, non-human animal","termid":"MONDO:1010009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atrial septal defect, cattle","secondary_identifiers":["OMIA:000089-9913"],"termid":"MONDO:1010436","xrefs":{"Monarch":{"xref_id":"1010436"}}}


id: GO:0015722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Enables the transfer of bile acid from one side of a hepatocyte plasma membrane into a bile canaliculus. Bile canaliculi are the thin tubes formed by hepatocyte membranes. Bile acids are any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile acid and bile salt transport","termid":"GO:0015721"},{"relation_name":"is_a","term_name":"secretion","termid":"GO:0046903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"canalicular bile acid transport","termid":"GO:0015722"}


id: PBO:0050193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 10","termid":"PBO:0050193"}


id: PBO:0082131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Actin-binding protein; involved in bundling of actin filaments and endocytosis of actin cortical patches; activity stimulated by Las17p; contains SH3 domain similar to Rvs167p; YSC84 has a paralog, LSB3, that arose from the whole genome duplication","termid":"PBO:0082131"}


id: PBO:0079467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TVP23C pseudogene 3","termid":"PBO:0079467"}


id: MONDO:0007698
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hand-foot-genital syndrome (HFGS) is a very rare multiple congenital abnormality syndrome characterized by distal limb malformations and urogenital defects.","definition_xrefs":["Orphanet:2438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005497"],"is_obsolete":false,"name":"hand-foot-genital syndrome","secondary_identifiers":["SCTID:702425002","MedDRA:10072361","DOID:0060739","MEDGEN:331103","ICD9:759.89","MESH:C535627","OMIM:140000","GARD:2594","UMLS:C1841679"],"synonyms":[{"name":"HFG","type":"related"},{"name":"HFG syndrome","type":"related"},{"name":"HFGS","type":"exact"},{"name":"HFU syndrome","type":"related"},{"name":"hand foot genital syndrome","type":"related"},{"name":"hand foot uterus syndrome","type":"related"},{"name":"hand-foot-genital syndrome","type":"exact"},{"name":"hand-foot-uterus syndrome","type":"exact"}],"termid":"MONDO:0007698","xrefs":{"Monarch":{"xref_id":"0007698"}}}


id: MONDO:0009502
data:
  {"annotated_genes":["SJAG_02158"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87128],"is_not":false,"summary":null,"term":"MONDO:0009502"}]},"cv_name":"mondo","definition":"Pyruvate dehydrogenase E2 deficiency is a very rare form of pyruvate dehydrogenase deficiency (PDHD) characterized by variable lactic acidosis and neurological dysfunction, mainly appearing during childhood.","definition_xrefs":["Orphanet:79244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate dehydrogenase deficiency","termid":"MONDO:0019169"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02158":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0037792","MONDO:0005244","MONDO:0004069"],"is_obsolete":false,"name":"pyruvate dehydrogenase E2 deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:343386","UMLS:C1855565","GARD:16712","MESH:C565448","OMIM:245348"],"synonyms":[{"name":"PDHDD","type":"related"},{"name":"dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex deficiency","type":"exact"},{"name":"dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex deficiency","type":"exact"},{"name":"lactic acidemia due to defect of E2 lipoyl transacetylase of the pyruvate dehydrogenase Complex","type":"related"},{"name":"pyruvate dehydrogenase E2 deficiency","type":"exact"},{"name":"pyruvate dehydrogenase complex component E2 deficiency","type":"exact"}],"termid":"MONDO:0009502","terms_by_termid":{"MONDO:0009502":null},"xrefs":{"Monarch":{"xref_id":"0009502"}}}


id: PBO:0051872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin superfamily containing leucine rich repeat 2","termid":"PBO:0051872"}


id: PBO:0111853
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fun thirty family","termid":"PBO:0111853"}


id: PBO:0013764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy protein Atg14","termid":"PBO:0013764"}


id: PBO:0042063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 126","termid":"PBO:0042063"}


id: GO:0042259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-asparagine to form peptidyl-L-beta-methylthioasparagine, typical of bacterial ribosomal protein S12.","definition_xrefs":["GOC:jsg","RESID:AA0320"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-L-beta-methylthioasparagine biosynthetic process from peptidyl-asparagine (obsolete GO:0042259)","synonyms":[{"name":"peptidyl-L-beta-methylthioasparagine anabolism from peptidyl-asparagine","type":"exact"},{"name":"peptidyl-L-beta-methylthioasparagine formation from peptidyl-asparagine","type":"exact"},{"name":"peptidyl-L-beta-methylthioasparagine synthesis from peptidyl-asparagine","type":"exact"}],"termid":"GO:0042259"}


id: PBO:0070490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 25","termid":"PBO:0070490"}


id: PBO:0054438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1834","termid":"PBO:0054438"}


id: PBO:0078867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily M member 2","termid":"PBO:0078867"}


id: GO:0016025
data:
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id: PBO:0075293
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id: GO:0060078
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id: MONDO:0957382
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id: GO:0048764
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id: GO:1903401
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id: GO:0002489
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id: PBO:0005561
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id: GO:0002294
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id: MONDO:0019926
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id: GO:0047115
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + trans-1,2-dihydrobenzene-1,2-diol = NADPH + catechol.","definition_xrefs":["MetaCyc:1.3.1.20-RXN","EC:1.3.1.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity","secondary_identifiers":["RHEA:16729"],"synonyms":[{"name":"dihydrodiol dehydrogenase activity","type":"related"},{"name":"trans-1,2-dihydrobenzene-1,2-diol:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0047115"}


id: PBO:0064738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 74","termid":"PBO:0064738"}


id: MONDO:0012557
data:
  {"annotated_genes":["SJAG_00547"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86051],"is_not":false,"summary":null,"term":"MONDO:0012557"}]},"cv_name":"mondo","definition":"Cardiomyopathy-hypotonia-lactic acidosis syndrome is characterized by hypertrophic cardiomyopathy, muscular hypotonia and the presence of lactic acidosis at birth. It has been described in two sisters (both of whom died within the first year of life) from a nonconsanguineous Turkish family. The syndrome is caused by a homozygous point mutation in the exon 3A of the SLC25A3 gene encoding a mitochondrial membrane transporter.","definition_xrefs":["Orphanet:91130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"lactic acidosis","termid":"MONDO:0006040"},{"relation_name":"is_a","term_name":"mitochondrial substrate carrier disorder","termid":"MONDO:0016801"},{"relation_name":"is_a","term_name":"familial hypertrophic cardiomyopathy","termid":"MONDO:0024573"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00547":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0006025","MONDO:0004069","MONDO:0005267"],"is_obsolete":false,"name":"cardiomyopathy-hypotonia-lactic acidosis syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:324373","MESH:C563665","SCTID:718713000","GARD:16795","OMIM:610773","UMLS:C1835845"],"synonyms":[{"name":"Mpcd","type":"related"},{"name":"hypertrophic cardiomyopathy with hypotonia and lactic acidosis syndrome","type":"exact"},{"name":"mitochondrial phosphate carrier deficiency","type":"related"}],"termid":"MONDO:0012557","terms_by_termid":{"MONDO:0012557":null},"xrefs":{"Monarch":{"xref_id":"0012557"}}}


id: PBO:0056308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase 4","termid":"PBO:0056308"}


id: MOD:01149
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks the N6-amino of a peptidyl lysine with the carboxyl-terminal glycine of a sumo (Small Ubiquitin-related MOdifier) protein.","definition_xrefs":["PubMed:12612601","PubMed:18688235"],"direct_ancestors":[{"relation_name":"contains","term_name":"N6-glycyl-L-lysine","termid":"MOD:00134"},{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"},{"relation_name":"is_a","term_name":"crosslinked L-lysine residue","termid":"MOD:02051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01875"}],"interesting_parent_ids":["MOD:01875"],"is_obsolete":false,"name":"sumoylated lysine","termid":"MOD:01149"}


id: PBO:0057018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 106a","termid":"PBO:0057018"}


id: GO:0002336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an immature B cell becomes committed to become a B-1 B cell.","definition_xrefs":["GOC:jal","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell lineage commitment","termid":"GO:0002326"},{"relation_name":"part_of","term_name":"B-1 B cell differentiation","termid":"GO:0001923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"B-1 B cell lineage commitment","synonyms":[{"name":"B-1 B lymphocyte lineage commitment","type":"exact"},{"name":"B-1 B-cell lineage commitment","type":"exact"},{"name":"B-1 B-lymphocyte lineage commitment","type":"exact"}],"termid":"GO:0002336"}


id: PR:O13849
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cpy1 gene.","definition_xrefs":["UniProtKB:O13849","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase Y (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19G12.10c","synonyms":[{"name":"CPY (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cpy1","type":"exact"}],"termid":"PR:O13849"}


id: GO:0102896
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (10E,12Z,15Z)-9-hydroperoxyoctadeca-10,12,15-trienoate = colnelenate + H2O.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete colnelenate synthase activity (obsolete GO:0102896)","termid":"GO:0102896"}


id: PBO:0064650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPFIA1 pseudogene 1","termid":"PBO:0064650"}


id: GO:0032791
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to lead (Pb) ions.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion binding","termid":"GO:0046872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0046872"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0046872","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"lead ion binding","termid":"GO:0032791"}


id: PR:P87243
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rix1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87243"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-rRNA-processing protein rix1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4G3.18","synonyms":[{"name":"Spom972h-rix1","type":"exact"}],"termid":"PR:P87243"}


id: MONDO:0013791
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary thrombophilia due to congenital protein S deficiency","termid":"MONDO:0019144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"thrombophilia due to protein S deficiency, autosomal recessive","secondary_identifiers":["MEDGEN:482722","UMLS:C3281092","OMIM:614514","GARD:18569"],"synonyms":[{"name":"THPH6","type":"related"},{"name":"thrombophilia 5 due to protein S deficiency, autosomal recessive","type":"exact"},{"name":"thrombophilia due to PROTEIN S deficiency, autosomal recessive","type":"related"},{"name":"thrombophilia due to protein S deficiency, autosomal recessive","type":"exact"}],"termid":"MONDO:0013791","xrefs":{"Monarch":{"xref_id":"0013791"}}}


id: PBO:0062080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 11 pseudogene","termid":"PBO:0062080"}


id: MONDO:1012615
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of glomerulonephritis that occurs in sheep and is characterized by thickening of glomerular capillary basement membranes, proliferation of mesangial cells, and peri-glomerular fibrosis and associated with C3 deficiency.","definition_xrefs":["PMID:21252520","PMID:6372972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerulonephritis, non-human animal","termid":"MONDO:1010258"},{"relation_name":"is_a","term_name":"complement component 3 deficiency, non-human animal","termid":"MONDO:1011421"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesangiocapillary glomerulonephritis, type I, sheep","secondary_identifiers":["OMIA:000642-9940"],"termid":"MONDO:1012615","xrefs":{"Monarch":{"xref_id":"1012615"}}}


id: _global:has_ontology_root_term
data:
  {"annotation_feature_type":"gene","cv_name":"external","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_ontology_root_term","secondary_identifiers":["IAO:0000700"],"termid":"_global:has_ontology_root_term"}


id: SO:0001023
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An allele is one of a set of coexisting sequence variants of a gene.","definition_xrefs":["SO:immuno_workshop"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variant_collection","termid":"SO:0001507"},{"relation_name":"variant_of","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allele","secondary_identifiers":["http://en.wikipedia.org/wiki/Allele"],"synonyms":[{"name":"allelomorph","type":"exact"}],"termid":"SO:0001023"}


id: MONDO:0011156
data:
  {"annotated_genes":["SJAG_03363"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87265],"is_not":false,"summary":null,"term":"MONDO:0011156"}]},"cv_name":"mondo","definition":"Progressive familial intrahepatic cholestasis type 2 (PFIC2), a type of progressive familial intrahepatic cholestasis (PFIC), is a severe, neonatal, hereditary disorder in bile formation that is hepatocellular in origin and not associated with extrahepatic features. Initially, PFIC2 was reported under the name Byler syndrome.","definition_xrefs":["Orphanet:79304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign recurrent intrahepatic cholestasis type 2","termid":"MONDO:0011559"},{"relation_name":"is_a","term_name":"progressive familial intrahepatic cholestasis","termid":"MONDO:0015762"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03363":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005066","MONDO:0002515"],"is_obsolete":false,"name":"progressive familial intrahepatic cholestasis type 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3489789","DOID:0070222","OMIM:601847","GARD:1288","icd11.foundation:1168921980","MEDGEN:483742","NANDO:1201044"],"synonyms":[{"name":"ABCB11 progressive familial intrahepatic cholestasis","type":"exact"},{"name":"BSEP deficiency","type":"exact"},{"name":"PFIC2","type":"exact"},{"name":"cholestasis, progressive familial intrahepatic 2","type":"exact"},{"name":"cholestasis, progressive familial intrahepatic, 2","type":"related"},{"name":"cholestasis, progressive familial intrahepatic, type 2","type":"exact"},{"name":"progressive familial intrahepatic cholestasis caused by mutation in ABCB11","type":"exact"},{"name":"progressive familial intrahepatic cholestasis type 2","type":"exact"},{"name":"severe ABCB11 deficiency","type":"related"}],"termid":"MONDO:0011156","terms_by_termid":{"MONDO:0011156":null},"xrefs":{"Monarch":{"xref_id":"0011156"}}}


id: PBO:0089275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphogluconolactonase Pgk1","termid":"PBO:0089275"}


id: PBO:0080968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBTB7C antisense RNA 2","termid":"PBO:0080968"}


id: PBO:0056432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 5","termid":"PBO:0056432"}


id: MONDO:0006885
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0006885 (obsolete MONDO:0006885)","termid":"MONDO:0006885","xrefs":{"Monarch":{"xref_id":"0006885"}}}


id: MONDO:0005677
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spotted fever","termid":"MONDO:0001195"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rickettsia conorii infectious disease","secondary_identifiers":["EFO:0007179"],"termid":"MONDO:0005677","xrefs":{"Monarch":{"xref_id":"0005677"}}}


id: FYPO:0002398
data:
  {"alleles_by_uniquename":{"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"},"SJAG_04703:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04703","name":"for3delta","uniquename":"SJAG_04703:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[119653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001369"}],"single_locus_phenotype":[{"annotations":[119477],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003315"},{"annotations":[119536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002026"},{"annotations":[119654],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001369"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton","termid":"FYPO:0005665"},{"relation_name":"output_of","term_name":"abnormal actin cytoskeleton organization during vegetative growth","termid":"FYPO:0000801"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02392":null,"SJAG_04280":null,"SJAG_04522":null,"SJAG_04703":null},"genotype_count":4,"genotypes_by_uniquename":{"for3delta":{"display_name":"for3delta","display_uniquename":"for3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04703:allele-1","expression":"Null"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"rga4delta":{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0004803","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04522","SJAG_04280"],"name":"abnormal actin cytoskeleton during vegetative growth","references_by_uniquename":{"PMID:25866389":null,"PMID:30664646":null,"PMID:30726171":null},"single_locus_annotated_genes":["SJAG_04522","SJAG_04703","SJAG_02392"],"single_locus_genotype_uniquenames":["for3delta","pom1delta","rga4delta"],"synonyms":[{"name":"abnormal actin cytoskeleton during mitotic cell cycle","type":"related"},{"name":"abnormal actin cytoskeleton physical object quality during vegetative growth","type":"exact"}],"termid":"FYPO:0002398","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000338":null,"FYPO:0001369":null,"FYPO:0002026":null,"FYPO:0003315":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PBO:0081563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 487","termid":"PBO:0081563"}


id: PBO:0084935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA transport regulator; essential nuclear protein; Mex67p and Mtr2p form a mRNA export complex which binds to RNA","termid":"PBO:0084935"}


id: PBO:0041278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1q and TNF related 4","termid":"PBO:0041278"}


id: GO:0043628
data:
  {"annotated_genes":["SJAG_02621","SJAG_02622","SJAG_04942","SJAG_01836","SJAG_01867","SJAG_01176","SJAG_02725"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92203,93168,118421],"is_not":false,"summary":null,"term":"GO:0043628"},{"annotations":[118282,118395,71530,88717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990431"},{"annotations":[71531,118398],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990432"}]},"cv_name":"biological_process","definition":"Any process involved in forming the mature 3' end of a regulatory non-coding RNA molecule.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA 3'-end processing","termid":"GO:0031123"},{"relation_name":"is_a","term_name":"regulatory ncRNA processing","termid":"GO:0070918"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01176":null,"SJAG_01836":null,"SJAG_01867":null,"SJAG_02621":null,"SJAG_02622":null,"SJAG_02725":null,"SJAG_04942":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulatory ncRNA 3'-end processing","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ncRNA 3' end processing","type":"broad"},{"name":"ncRNA 3'-end processing","type":"broad"},{"name":"small regulatory ncRNA 3'-end processing","type":"narrow"}],"termid":"GO:0043628","terms_by_termid":{"GO:0043628":null,"GO:1990431":null,"GO:1990432":null}}


id: MONDO:0016404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete metabolic neurotransmission anomaly with epilepsy (obsolete MONDO:0016404)","secondary_identifiers":["Orphanet:225707"],"termid":"MONDO:0016404","xrefs":{"Monarch":{"xref_id":"0016404"}}}


id: PBO:0072062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S11","termid":"PBO:0072062"}


id: MOD:00079
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to N4-methyl-L-asparagine.","definition_xrefs":["PubMed:11875433","Unimod:34#N","RESID:AA0070","OMSSA:75","PubMed:2356973","PubMed:3782095"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monomethylated residue","termid":"MOD:00599"},{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"},{"relation_name":"is_a","term_name":"methylated asparagine","termid":"MOD:00673"},{"relation_name":"is_a","term_name":"residues isobaric at 128.058578 Da","termid":"MOD:00894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N4-methyl-L-asparagine","synonyms":[{"name":"(2S)-2-amino-N4-methylbutanediamic acid","type":"exact"},{"name":"MOD_RES N4-methylasparagine","type":"exact"},{"name":"Methyl","type":"related"},{"name":"Methylation","type":"related"},{"name":"N(gamma)-methylasparagine","type":"exact"},{"name":"N-methylasparagine","type":"exact"},{"name":"N4-methyl-L-asparagine","type":"exact"},{"name":"N4-methylated L-asparagine","type":"exact"},{"name":"N4Me1Asn","type":"exact"},{"name":"beta-aspartyl methylamide","type":"exact"},{"name":"beta-methylasparagine","type":"related"},{"name":"methyln","type":"exact"}],"termid":"MOD:00079"}


id: GO:0016638
data:
  {"annotated_genes":["SJAG_03861","SJAG_00707","SJAG_02496","SJAG_03266","SJAG_04054","SJAG_01881"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80742],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003884"},{"annotations":[73395],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004354"},{"annotations":[72586],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016040"},{"annotations":[74555],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004375"},{"annotations":[115055],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043799"},{"annotations":[59828],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016639"},{"annotations":[76110,112137],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004733"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.","definition_xrefs":["EC:1.4.-.-","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00707":null,"SJAG_01881":null,"SJAG_02496":null,"SJAG_03266":null,"SJAG_03861":null,"SJAG_04054":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the CH-NH2 group of donors","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors","type":"narrow"}],"termid":"GO:0016638","terms_by_termid":{"GO:0003884":null,"GO:0004354":null,"GO:0004375":null,"GO:0004733":null,"GO:0016040":null,"GO:0016639":null,"GO:0043799":null}}


id: GO:0044183
data:
  {"annotated_genes":["SJAG_01874","SJAG_01510","SJAG_04684","SJAG_04055","SJAG_04567","SJAG_04899","SJAG_05414","SJAG_03320","SJAG_02926","SJAG_04844","SJAG_05191","SJAG_00954","SJAG_02461","SJAG_00447","SJAG_04511","SJAG_01186","SJAG_04121","SJAG_01664","SJAG_02919","SJAG_04197","SJAG_00790","SJAG_02875","SJAG_01615","SJAG_04602","SJAG_02378","SJAG_02014","SJAG_03237","SJAG_00609","SJAG_04074","SJAG_02270","SJAG_03099","SJAG_00770","SJAG_00564","SJAG_03930","SJAG_03570","SJAG_03463","SJAG_01684","SJAG_03815","SJAG_04228","SJAG_00353","SJAG_01002","SJAG_00750"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[68254,68548,70559,89643,93287,95376,97179,99812,100894,101429,102767,104662,106568,108717,108943,110324,110325,110714,116040,116638,116844,117089,117942],"is_not":false,"summary":null,"term":"GO:0044183"},{"annotations":[64538,62518,60111,67314,58049,59223,60435,67962,65189,69357,64843,60281,61607,67181,66532,69797,56936,57884,65407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140662"}]},"cv_name":"molecular_function","definition":"Binding to a protein or a protein-containing complex to assist the protein folding process.","definition_xrefs":["GOC:mtg_cambridge_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular_function","termid":"GO:0003674"}],"gene_count":42,"genes_by_uniquename":{"SJAG_00353":null,"SJAG_00447":null,"SJAG_00564":null,"SJAG_00609":null,"SJAG_00750":null,"SJAG_00770":null,"SJAG_00790":null,"SJAG_00954":null,"SJAG_01002":null,"SJAG_01186":null,"SJAG_01510":null,"SJAG_01615":null,"SJAG_01664":null,"SJAG_01684":null,"SJAG_01874":null,"SJAG_02014":null,"SJAG_02270":null,"SJAG_02378":null,"SJAG_02461":null,"SJAG_02875":null,"SJAG_02919":null,"SJAG_02926":null,"SJAG_03099":null,"SJAG_03237":null,"SJAG_03320":null,"SJAG_03463":null,"SJAG_03570":null,"SJAG_03815":null,"SJAG_03930":null,"SJAG_04055":null,"SJAG_04074":null,"SJAG_04121":null,"SJAG_04197":null,"SJAG_04228":null,"SJAG_04511":null,"SJAG_04567":null,"SJAG_04602":null,"SJAG_04684":null,"SJAG_04844":null,"SJAG_04899":null,"SJAG_05191":null,"SJAG_05414":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"protein folding chaperone","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9866253","Reactome:R-HSA-9855212","Reactome:R-HSA-9865893","Reactome:R-HSA-9018785"],"synonyms":[{"name":"chaperone activity","type":"broad"},{"name":"protein binding involved in protein folding","type":"exact"}],"termid":"GO:0044183","terms_by_termid":{"GO:0044183":null,"GO:0140662":null}}


id: FYPO:0002404
data:
  {"alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; 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S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]},"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]},"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]},"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]},"nem1delta":{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]},"nem2delta":{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal endomembrane system","references_by_uniquename":{"PMID:21802294":null,"PMID:24184107":null,"PMID:25318672":null,"PMID:26774782":null,"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_00426","SJAG_02763","SJAG_04464","SJAG_01745","SJAG_03940","SJAG_03449","SJAG_01906"],"single_locus_genotype_uniquenames":["ned1delta","lem2delta","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","nem2delta","ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","nem1delta","man1delta","ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal endomembrane system during mitotic cell cycle","type":"related"},{"name":"abnormal endomembrane system during vegetative growth","type":"exact"},{"name":"abnormal endomembrane system physical object quality","type":"exact"}],"termid":"FYPO:0002404","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000162":null,"FYPO:0001556":null,"FYPO:0001784":null,"FYPO:0003779":null,"FYPO:0003976":null,"FYPO:0006433":null,"FYPO_EXT:0000001":null}}


id: PBO:0041678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CADM3 antisense RNA 1","termid":"PBO:0041678"}


id: GO:0031104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of dendrites in response to their loss or damage.","definition_xrefs":["GOC:dph","GOC:dgh","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendrite development","termid":"GO:0016358"},{"relation_name":"is_a","term_name":"neuron projection regeneration","termid":"GO:0031102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dendrite regeneration","termid":"GO:0031104"}


id: GO:0009138
data:
  {"annotated_genes":["SJAG_00779","SJAG_02874","SJAG_04657","SJAG_03676","SJAG_00885","SJAG_04665"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80764],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046705"},{"annotations":[107573,92775],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046704"},{"annotations":[92776,95820,107574],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[71370],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[71369],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[80767],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006225"},{"annotations":[76827],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006256"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate metabolic process","termid":"GO:0009132"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00779":null,"SJAG_00885":null,"SJAG_02874":null,"SJAG_03676":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"pyrimidine nucleoside diphosphate metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine nucleoside diphosphate metabolism","type":"exact"}],"termid":"GO:0009138","terms_by_termid":{"GO:0006225":null,"GO:0006227":null,"GO:0006233":null,"GO:0006240":null,"GO:0006256":null,"GO:0046704":null,"GO:0046705":null}}


id: MONDO:0700255
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Paraneoplastic syndrome that involves the renal system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary system disorder","termid":"MONDO:0002118"},{"relation_name":"is_a","term_name":"paraneoplastic syndrome","termid":"MONDO:0021073"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraneoplastic renal syndrome","termid":"MONDO:0700255","xrefs":{"Monarch":{"xref_id":"0700255"}}}


id: MONDO:0033262
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial nephrotic syndrome","termid":"MONDO:0002350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrotic syndrome 15","secondary_identifiers":["DOID:0080271","MEDGEN:1620414","OMIM:617609","UMLS:C4539896"],"synonyms":[{"name":"NPHS15","type":"related"},{"name":"nephrotic syndrome 15","type":"exact"},{"name":"nephrotic syndrome, type 15","type":"exact"}],"termid":"MONDO:0033262","xrefs":{"Monarch":{"xref_id":"0033262"}}}


id: PBO:0004222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-end-recognizing protein Ubr1","termid":"PBO:0004222"}


id: PBO:0048701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyoxalase domain containing 5","termid":"PBO:0048701"}


id: GO:0044664
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cellular process of the reversion of cells to their original cell type, occurring as part of the process of phenotypic switching. Phenotypic switching begins with changes in cell morphology and altered gene expression patterns and ends when the morphology of a population of cells has reverted back to the default state, accompanied by altered expression patterns.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete reversion of cell type to default state involved in phenotypic switching (obsolete GO:0044664)","termid":"GO:0044664"}


id: GO:0040030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any heritable epigenetic process that modulates the frequency, rate or extent of protein function by self-perpetuating conformational conversions of normal proteins in healthy cells. This is distinct from, though mechanistically analogous to, disease states associated with prion propagation and amyloidogenesis. A single protein, if it carries a glutamine/asparagine-rich ('prion') domain, can sometimes stably exist in at least two distinct physical states, each associated with a different phenotype; propagation of one of these traits is achieved by a self-perpetuating change in the protein from one form to the other, mediated by conformational changes in the glutamine/asparagine-rich domain. Prion domains are both modular and transferable to other proteins, on which they can confer a heritable epigenetic alteration of function; existing bioinformatics data indicate that they are rare in non-eukarya, but common in eukarya.","definition_xrefs":["PMID:10611975","PMID:11447696","PMID:11050225","GOC:ems","PMID:11782551","PMID:11685242","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of molecular function, epigenetic (obsolete GO:0040030)","synonyms":[{"name":"regulation of protein activity, epigenetic","type":"exact"}],"termid":"GO:0040030"}


id: PBO:0030878
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_vegetative_cell_population_growth","termid":"PBO:0030878"}


id: GO:0007434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determination in an adult organism of where the salivary gland forms, the total number of salivary gland cells and how many cells are allocated to each of the specialised cell types within the salivary gland.","definition_xrefs":["GOC:tb","PMID:11598957"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland boundary specification","termid":"GO:0007432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adult salivary gland boundary specification","synonyms":[{"name":"larval salivary gland determination","type":"broad"}],"termid":"GO:0007434"}


id: GO:0097581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lamellipodium. A lamellipodium is a thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments.","definition_xrefs":["GOC:als","PMID:16054028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection organization","termid":"GO:0120036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lamellipodium organization","termid":"GO:0097581"}


id: GO:0072238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a metanephric long nephron over time, from its formation to the mature structure. Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long nephron development","termid":"GO:0072029"},{"relation_name":"is_a","term_name":"metanephric nephron development","termid":"GO:0072210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric long nephron development","synonyms":[{"name":"metanephric juxtamedullary nephron development","type":"related"}],"termid":"GO:0072238"}


id: PBO:0062726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily A member 5","termid":"PBO:0062726"}


id: PBO:0031381
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-invasive_growth_abolished_(obsolete_FYPO:0000048)","termid":"PBO:0031381"}


id: MONDO:0004242
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"peptic ulcer disease","termid":"MONDO:0004247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"active peptic ulcer disease","secondary_identifiers":["MESH:D010438","DOID:749","SCTID:64121000","ICD9:578.9","SCTID:74474003"],"synonyms":[{"name":"GI bleeding","type":"related"}],"termid":"MONDO:0004242","xrefs":{"Monarch":{"xref_id":"0004242"}}}


id: PBO:0059777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 3","termid":"PBO:0059777"}


id: FYECO:0000294
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"A sequential growth condition in which cells are first grown at a high temperature followed by growth at low temperature.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping sequential growth conditions","termid":"FYECO:0000094"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"temperature shift, high to low","termid":"FYECO:0000294"}


id: GO:0070455
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of heme.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heme biosynthetic process","termid":"GO:0070453"},{"relation_name":"is_a","term_name":"positive regulation of tetrapyrrole biosynthetic process","termid":"GO:1901465"},{"relation_name":"positively_regulates","term_name":"heme biosynthetic process","termid":"GO:0006783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0033013"},{"rel_name":"positively_regulates","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"positive regulation of heme biosynthetic process","synonyms":[{"name":"activation of heme biosynthetic process","type":"narrow"},{"name":"positive regulation of haem biosynthetic process","type":"exact"},{"name":"positive regulation of heme anabolism","type":"exact"},{"name":"positive regulation of heme biosynthesis","type":"exact"},{"name":"positive regulation of heme formation","type":"exact"},{"name":"positive regulation of heme synthesis","type":"exact"},{"name":"stimulation of heme biosynthetic process","type":"narrow"},{"name":"up regulation of heme biosynthetic process","type":"exact"},{"name":"up-regulation of heme biosynthetic process","type":"exact"},{"name":"upregulation of heme biosynthetic process","type":"exact"}],"termid":"GO:0070455"}


id: PR:O14268
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC7D4.13c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14268"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C7D4.13c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC7D4.13c","synonyms":[{"name":"Spom972h-SPAC7D4.13c","type":"exact"}],"termid":"PR:O14268"}


id: GO:0021509
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells.","definition_xrefs":["GOC:dph","PMID:15936325","GOC:dgh","GOC:jid","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"neural tube formation","termid":"GO:0001841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"roof plate formation","termid":"GO:0021509"}


id: FYECO:0000389
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing glucose, salts, water and with sulfate ions as the sulfur source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose MM, sulfate sulfur source","synonyms":[{"name":"glucose MM, sulphate sulphur source","type":"exact"},{"name":"glucose minimal medium, sulfate sulfur source","type":"exact"},{"name":"glucose minimal medium, sulphate sulphur source","type":"exact"}],"termid":"FYECO:0000389"}


id: FYPO:0006599
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to centromeric chromatin is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to centromere during vegetative growth","termid":"FYPO:0000450"},{"relation_name":"is_a","term_name":"decreased protein localization to chromatin during vegetative growth","termid":"FYPO:0002909"},{"relation_name":"is_a","term_name":"abnormal protein localization to centromeric chromatin during vegetative growth","termid":"FYPO:0005306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to centromeric chromatin during vegetative growth","synonyms":[{"name":"decreased protein localisation to centromeric chromatin during vegetative growth","type":"exact"},{"name":"decreased protein localization to centromeric chromatin during mitotic cell cycle","type":"related"},{"name":"reduced protein localization to centromeric chromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0006599"}


id: MOD:01056
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3',5'-dibromo-L-tyrosine","termid":"MOD:01023"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(79)Br labeled 3',5'-dibromotyrosine","termid":"MOD:01056"}


id: PBO:0080289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 53 pseudogene","termid":"PBO:0080289"}


id: MONDO:0017924
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"This syndrome is characterized by progressive calcification of the brain and spinal cord, growth retardation, psychomotor anomalies, deafness and anemia. Renal tubular acidosis was found in one patient. To date, this syndrome has been described in only two patients from one family.","definition_xrefs":["Orphanet:3240"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"central nervous system calcification-deafness-tubular acidosis-anemia syndrome","secondary_identifiers":["UMLS:C4512024","GARD:18789","MEDGEN:1384620"],"synonyms":[{"name":"Yoshimura-Takeshita syndrome","type":"exact"}],"termid":"MONDO:0017924","xrefs":{"Monarch":{"xref_id":"0017924"}}}


id: MONDO:0012591
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteogenesis imperfecta type V is a moderate type of osteogenesis imperfecta (OI), a genetic disorder characterized by increased bone fragility, low bone mass and susceptibility to bone fractures with variable severity. OI type V is characterized by mild to moderate short stature, dislocation of the radial head, mineralized interosseous membranes, hyperplasic callus, white sclera and no dentinogenesis imperfecta (DI).","definition_xrefs":["Orphanet:216828"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteogenesis imperfecta and a reduction of bone mineral density.","termid":"MONDO:0800064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"osteogenesis imperfecta type 5","secondary_identifiers":["OMIM:610967","UMLS:C2931093","MEDGEN:419332","DOID:0110344","GARD:8699","icd11.foundation:1718903422","MESH:C567042"],"synonyms":[{"name":"IFITM5 osteogenesis imperfecta","type":"exact"},{"name":"OI type 5","type":"exact"},{"name":"OI type V","type":"related"},{"name":"OI with calcification in interosseous membranes","type":"related"},{"name":"OI, type 5","type":"related"},{"name":"OI5","type":"exact"},{"name":"osteogenesis imperfecta caused by mutation in IFITM5","type":"exact"},{"name":"osteogenesis imperfecta type V","type":"exact"},{"name":"osteogenesis imperfecta, type 5","type":"related"},{"name":"osteogenesis imperfecta, type V","type":"related"},{"name":"type V OI","type":"related"}],"termid":"MONDO:0012591","xrefs":{"Monarch":{"xref_id":"0012591"}}}


id: PBO:0011496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bin3 family, methyltransferase (predicted)","termid":"PBO:0011496"}


id: PBO:0078364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (TTC) 8-2","termid":"PBO:0078364"}


id: GO:0004516
data:
  {"annotated_genes":["SJAG_03298"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80288],"is_not":false,"summary":null,"term":"GO:0004516"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate + ATP + H2O = nicotinate beta-D-ribonucleotide + ADP + phosphate + diphosphate.","definition_xrefs":["RHEA:36163","PMID:7503993"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03298":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"nicotinate phosphoribosyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:6.3.4.21","KEGG_REACTION:R01724","MetaCyc:NICOTINATEPRIBOSYLTRANS-RXN","Reactome:R-HSA-197186"],"synonyms":[{"name":"niacin ribonucleotidase activity","type":"related"},{"name":"nicotinate-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase activity","type":"related"},{"name":"nicotinic acid mononucleotide glycohydrolase activity","type":"related"},{"name":"nicotinic acid mononucleotide pyrophosphorylase activity","type":"related"},{"name":"nicotinic acid phosphoribosyltransferase activity","type":"related"}],"termid":"GO:0004516","terms_by_termid":{"GO:0004516":null}}


