# terms

id: PBO:0040403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V1 subunit G1 pseudogene 4","termid":"PBO:0040403"}


id: MONDO:0009508
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lambotte syndrome","secondary_identifiers":["MESH:C537549","OMIM:245552","UMLS:C1855550","MEDGEN:343380"],"synonyms":[{"name":"Lambotte syndrome","type":"exact"},{"name":"microcephaly, holoprosencephaly, and intrauterine Growth retardation","type":"related"}],"termid":"MONDO:0009508","xrefs":{"Monarch":{"xref_id":"0009508"}}}


id: FYPO:0004167
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is increased relative to normal in a medium containing glycerol as the carbon source.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population growth","termid":"FYPO:0004557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0001985","FYPO:0005447","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"increased cell population growth on glycerol carbon source","synonyms":[{"name":"increased growth on glycerol carbon source","type":"broad"},{"name":"increased vegetative cell growth on glycerol carbon source","type":"exact"}],"termid":"FYPO:0004167"}


id: PBO:0016948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Pos1","termid":"PBO:0016948"}


id: PBO:0090701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LDOC related- Zinc finger, CCHC-type","termid":"PBO:0090701"}


id: PATO:0000779
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000779 absolute locomotor activity value (obsolete PATO:0000779)","termid":"PATO:0000779"}


id: GO:0008795
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + deamido-NAD+ + NH3 = AMP + diphosphate + NAD+.","definition_xrefs":["EC:6.3.1.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-ammonia (or amide) ligase activity","termid":"GO:0016880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"NAD+ synthase activity","secondary_identifiers":["RHEA:21188","GO:0008749","MetaCyc:NAD-SYNTH-NH3-RXN","GO:0016965"],"synonyms":[{"name":"NAD synthase (AMP-forming)","type":"exact"},{"name":"NAD synthase activity","type":"exact"},{"name":"NAD synthetase activity","type":"related"},{"name":"NAD(+) synthetase activity","type":"related"},{"name":"NAD+ synthetase activity","type":"related"},{"name":"deamido-NAD+:ammonia ligase (AMP-forming)","type":"related"},{"name":"diphosphopyridine nucleotide synthetase activity","type":"related"},{"name":"nicotinamide adenine dinucleotide synthetase activity","type":"related"}],"termid":"GO:0008795"}


id: GO:0043025
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell body","termid":"GO:0044297"},{"relation_name":"part_of","term_name":"somatodendritic compartment","termid":"GO:0036477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"neuronal cell body","secondary_identifiers":["Wikipedia:Soma_(biology)","NIF_Subcellular:sao1044911821"],"synonyms":[{"name":"neuron cell body","type":"exact"},{"name":"neuronal cell soma","type":"exact"}],"termid":"GO:0043025"}


id: FYPO:0003994
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of succinate dehydrogenase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal succinate dehydrogenase activity","termid":"FYPO:0003994"}


id: PR:O14091
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sut1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general alpha-glucoside permease (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F3.08","synonyms":[{"name":"Spom972h-sut1","type":"exact"}],"termid":"PR:O14091"}


id: PBO:0089872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-phosphate beta-D-mannosyltransferase catalytic subunit Dpm1","termid":"PBO:0089872"}


id: MONDO:0016864
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Duane-radial ray syndrome","termid":"MONDO:0011812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005497"],"is_obsolete":false,"name":"Okihiro syndrome due to a point mutation","secondary_identifiers":["MEDGEN:1842838","Orphanet:261647","GARD:20788","UMLS:C5679683"],"synonyms":[{"name":"Duane-radial ray syndrome due to a point mutation","type":"exact"}],"termid":"MONDO:0016864","xrefs":{"Monarch":{"xref_id":"0016864"}}}


id: PATO:0005013
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"incomplete structure","termid":"PATO:0005013"}


id: PBO:0053647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 698","termid":"PBO:0053647"}


id: PBO:0065876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB28, member RAS oncogene family pseudogene 4","termid":"PBO:0065876"}


id: GO:0001621
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with ADP and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.","definition_xrefs":["GOC:signaling","PMID:11196645","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled purinergic nucleotide receptor activity","termid":"GO:0045028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled ADP receptor activity","secondary_identifiers":["GO:0045032"],"synonyms":[{"name":"ADP receptor activity","type":"broad"},{"name":"ADP-activated adenosine receptor activity","type":"related"},{"name":"ADP-activated nucleotide receptor activity","type":"broad"},{"name":"K101 receptor","type":"narrow"},{"name":"platelet ADP receptor activity","type":"narrow"}],"termid":"GO:0001621"}


id: GO:0090735
data:
  {"annotated_genes":["SJAG_02708","SJAG_04530","SJAG_01708","SJAG_02079","SJAG_01410","SJAG_02267","SJAG_00757","SJAG_03221"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65785,75466,76200,65205,72618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000730"},{"annotations":[78911],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000707"},{"annotations":[110615,107978],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010772"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a DNA repair complex.","definition_xrefs":["GOC:pg","PMID:27113759","PMID:27233470"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00757":null,"SJAG_01410":null,"SJAG_01708":null,"SJAG_02079":null,"SJAG_02267":null,"SJAG_02708":null,"SJAG_03221":null,"SJAG_04530":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"DNA repair complex assembly","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0090735","terms_by_termid":{"GO:0000707":null,"GO:0000730":null,"GO:0010772":null}}


id: GO:0002666
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of T cell tolerance induction.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of tolerance induction","termid":"GO:0002645"},{"relation_name":"is_a","term_name":"regulation of T cell tolerance induction","termid":"GO:0002664"},{"relation_name":"positively_regulates","term_name":"T cell tolerance induction","termid":"GO:0002517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T cell tolerance induction","synonyms":[{"name":"activation of T cell tolerance induction","type":"narrow"},{"name":"positive regulation of T lymphocyte tolerance induction","type":"exact"},{"name":"positive regulation of T-cell tolerance induction","type":"exact"},{"name":"positive regulation of T-lymphocyte tolerance induction","type":"exact"},{"name":"stimulation of T cell tolerance induction","type":"narrow"},{"name":"up regulation of T cell tolerance induction","type":"exact"},{"name":"up-regulation of T cell tolerance induction","type":"exact"},{"name":"upregulation of T cell tolerance induction","type":"exact"}],"termid":"GO:0002666"}


id: PBO:0056162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic arrest deficient 1 like 1","termid":"PBO:0056162"}


id: PBO:0073918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 16 member 7","termid":"PBO:0073918"}


id: PBO:0090334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane guanine and adenine transmembrane transporter","termid":"PBO:0090334"}


id: MONDO:0011652
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic neurodevelopmental disorder characterized by neonatal hypotonia, global developmental delay, normal to accelerated growth, absent to severely delayed speech, and minor dysmorphic features. Phelan-McDermid syndrome can be caused by a deletion at chromosome 22q13 or by mutation in the SHANK3 gene.","definition_xrefs":["OMIM:606232","Orphanet:48652"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"chromosome 22q deletion","termid":"MONDO:0022760"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phelan-McDermid syndrome","secondary_identifiers":["SCTID:699310000","UMLS:C1853490","GARD:10130","DOID:0080354","DECIPHER:20","NORD:1573","MESH:C536801","ICD9:758.39","NCIT:C157124","MEDGEN:339994"],"synonyms":[{"name":"22q13 deletion","type":"narrow"},{"name":"22q13.3 deletion syndrome","type":"related"},{"name":"PHMDS","type":"exact"},{"name":"Phelan McDermid syndrome","type":"exact"},{"name":"Phelan-McDermid syndrome","type":"exact"},{"name":"chromosome 22Q13.3 deletion syndrome","type":"related"},{"name":"deletion 22q13.3 syndrome","type":"related"},{"name":"monosomy 22q13","type":"narrow"},{"name":"monosomy type 22q13","type":"narrow"},{"name":"telomeric 22Q13 monosomy syndrome","type":"related"}],"termid":"MONDO:0011652","xrefs":{"Monarch":{"xref_id":"0011652"}}}


id: GO:0061912
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The macroautophagy process in which specific structures are targeted by the autophagy process.","definition_xrefs":["PMID:22966490","PMID:21997368","PMID:20484971"],"gene_count":0,"genotype_count":0,"name":"obsolete selective autophagy (obsolete GO:0061912)","termid":"GO:0061912"}


id: GO:0050938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of xanthophore differentiation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pigment cell differentiation","termid":"GO:0050932"},{"relation_name":"regulates","term_name":"xanthophore differentiation","termid":"GO:0050936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of xanthophore differentiation","termid":"GO:0050938"}


id: PBO:0082799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of transport protein particle (TRAPP) complex II; TRAPPII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating intra-Golgi and endosome-Golgi traffic; promotes association of TRAPPII-specific subunits with the TRAPP core complex; sedlin related; human Sedlin mutations cause SEDT, a skeletal disorder","termid":"PBO:0082799"}


id: GO:0045579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of B cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of B cell differentiation","termid":"GO:0045577"},{"relation_name":"is_a","term_name":"positive regulation of lymphocyte differentiation","termid":"GO:0045621"},{"relation_name":"is_a","term_name":"positive regulation of B cell activation","termid":"GO:0050871"},{"relation_name":"positively_regulates","term_name":"B cell differentiation","termid":"GO:0030183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of B cell differentiation","synonyms":[{"name":"activation of B cell differentiation","type":"narrow"},{"name":"positive regulation of B cell development","type":"related"},{"name":"positive regulation of B lymphocyte differentiation","type":"exact"},{"name":"positive regulation of B-cell differentiation","type":"exact"},{"name":"positive regulation of B-lymphocyte differentiation","type":"exact"},{"name":"stimulation of B cell differentiation","type":"narrow"},{"name":"up regulation of B cell differentiation","type":"exact"},{"name":"up-regulation of B cell differentiation","type":"exact"},{"name":"upregulation of B cell differentiation","type":"exact"}],"termid":"GO:0045579"}


id: PBO:0080134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VAMP associated protein B and C","termid":"PBO:0080134"}


id: PR:O43004
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1603 gene.","definition_xrefs":["UniProtKB:O43004","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L16-C (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G2.05","synonyms":[{"name":"Spom972h-rpl1603","type":"exact"}],"termid":"PR:O43004"}


id: PBO:0031660
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-pseudohyphal_growth_abolished","termid":"PBO:0031660"}


id: MONDO:0016498
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Guillain-Barre syndrome","termid":"MONDO:0016218"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"acute pure sensory neuropathy","secondary_identifiers":["UMLS:C5190881","MEDGEN:1682724","GARD:20616","Orphanet:231450"],"synonyms":[{"name":"acute pure sensory GBS","type":"exact"},{"name":"acute pure sensory Guillain-Barre syndrome","type":"exact"},{"name":"acute pure sensory Guillain-Barré syndrome","type":"exact"}],"termid":"MONDO:0016498","xrefs":{"Monarch":{"xref_id":"0016498"}}}


id: MONDO:1012042
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellar abiotrophy, non-human animal","termid":"MONDO:1011834"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar abiotrophy, goat","secondary_identifiers":["OMIA:000175-9925"],"termid":"MONDO:1012042","xrefs":{"Monarch":{"xref_id":"1012042"}}}


id: PBO:0083626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 Ub-ligase (N-recognin); recognizes and ubiquitinates N-end rule pathway substrates in complex with Rad6p; Roq1p-bound form accelerates degradation of misfolded and native ER membrane and cytosolic proteins as part of the stress-induced homeostatically regulated protein degradation (SHRED) pathway; role in ER-associated protein degradation; modifies Cup9p to regulate peptide transport; mutation in human UBR1 causes Johansson-Blizzard Syndrome (JBS)","termid":"PBO:0083626"}


id: MONDO:1011303
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mammary gland disorder that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-human animal disease","termid":"MONDO:0005583"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mammary gland disorder, non-human animal","termid":"MONDO:1011303","xrefs":{"Monarch":{"xref_id":"1011303"}}}


id: PBO:0071219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 60","termid":"PBO:0071219"}


id: PR:Q09750
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pst1 gene.","definition_xrefs":["UniProtKB:Q09750","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired amphipathic helix protein pst1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12C2.10c","synonyms":[{"name":"SIN3 homolog 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pst1","type":"exact"}],"termid":"PR:Q09750"}


id: PR:P36602
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribonucleoside-diphosphate reductase large subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PMID:14648198","PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"ribonucleoside-diphosphate reductase large chain (Schizosaccharomyces pombe)","termid":"PR:000036298"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonucleoside-diphosphate reductase large chain (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F7.05","secondary_identifiers":["PR:000027719","UniProtKB:P36602"],"synonyms":[{"name":"Spom972h-cdc22","type":"exact"}],"termid":"PR:P36602"}


id: PBO:0045480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desmocollin 2","termid":"PBO:0045480"}


id: GO:0006179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that generates guanosine, guanine riboside, from derivatives of it without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleoside salvage","termid":"GO:0006166"},{"relation_name":"is_a","term_name":"guanosine biosynthetic process","termid":"GO:0046114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"guanosine salvage","synonyms":[{"name":"guanine, xanthine and their nucleoside salvage","type":"broad"}],"termid":"GO:0006179"}


id: PBO:0036505
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human COQ5","termid":"PBO:0036505"}


id: PBO:0078732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Met (anticodon CAT) 5-1","termid":"PBO:0078732"}


id: PBO:0089251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaxin 2 (Sam35)","termid":"PBO:0089251"}


id: PBO:0077265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein with EGF like and two follistatin like domains 2","termid":"PBO:0077265"}


id: MONDO:0019687
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete type 11 collagen-related bone disorder (obsolete MONDO:0019687)","termid":"MONDO:0019687","xrefs":{"Monarch":{"xref_id":"0019687"}}}


id: MONDO:0037860
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare systemic or rheumatologic disease (obsolete MONDO:0037860)","secondary_identifiers":["Orphanet:98023"],"termid":"MONDO:0037860","xrefs":{"Monarch":{"xref_id":"0037860"}}}


id: PBO:0036372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uridine ribohydrolase Urh1 (predicted)","termid":"PBO:0036372"}


id: PBO:0064456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein O-glucosyltransferase 2","termid":"PBO:0064456"}


id: GO:1900365
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of mRNA polyadenylation.","definition_xrefs":["GOC:se","PMID:15121841","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of mRNA polyadenylation (obsolete GO:1900365)","synonyms":[{"name":"activation of cleavage and polyadenylylation specificity factor activity","type":"narrow"},{"name":"activation of mRNA polyadenylation","type":"narrow"},{"name":"activation of mRNA polyadenylylation","type":"narrow"},{"name":"positive regulation of cleavage and polyadenylylation specificity factor activity","type":"narrow"},{"name":"positive regulation of mRNA polyadenylylation","type":"exact"}],"termid":"GO:1900365"}


id: FYPO:0004633
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during the second meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein kinase activity during meiosis II","synonyms":[{"name":"decreased protein kinase activity during second meiotic nuclear division","type":"exact"},{"name":"reduced protein kinase activity during meiosis II","type":"exact"}],"termid":"FYPO:0004633"}


id: PBO:0076302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYNGAP1 antisense RNA 1","termid":"PBO:0076302"}


id: PBO:0085924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; member of the seripauperin multigene family encoded mainly in subtelomeric regions; SWAT-GFP and mCherry fusion proteins localize to the vacuole; expression induced by low temperature and also by anaerobic conditions; induced during alcoholic fermentation","termid":"PBO:0085924"}


id: PBO:0082111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Acetolactate synthase; catalyses the first common step in isoleucine and valine biosynthesis and is the target of several classes of inhibitors, localizes to the mitochondria; expression of the gene is under general amino acid control","termid":"PBO:0082111"}


id: PBO:0082171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AdoMet-dependent tRNA methyltransferase; also involved in methoxycarbonylation; required for the synthesis of wybutosine (yW), a modified guanosine found at the 3'-position adjacent to the anticodon of phe-tRNA; similarity to Ppm1p","termid":"PBO:0082171"}


id: SO:0001907
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that causes the extension of a genomic feature, with regard to the reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_variant","termid":"SO:0001878"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feature_elongation","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"VEP:feature_elongation","type":"exact"},{"name":"feature elongation","type":"exact"}],"termid":"SO:0001907"}


id: GO:0051200
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a prosthetic group.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of prosthetic group metabolic process (obsolete GO:0051200)","synonyms":[{"name":"activation of prosthetic group metabolic process","type":"narrow"},{"name":"positive regulation of coenzyme and prosthetic group metabolic process","type":"broad"},{"name":"positive regulation of coenzyme and prosthetic group metabolism","type":"broad"},{"name":"positive regulation of prosthetic group metabolism","type":"exact"},{"name":"stimulation of prosthetic group metabolic process","type":"narrow"},{"name":"up regulation of prosthetic group metabolic process","type":"exact"},{"name":"up-regulation of prosthetic group metabolic process","type":"exact"},{"name":"upregulation of prosthetic group metabolic process","type":"exact"}],"termid":"GO:0051200"}


id: GO:0102050
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: indole-3-acetate + L-tyrosine + ATP(4-) = H+ + indole-3-acetyl-tyrosine + AMP(2-) + diphosphoric acid.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete indole-3-acetyl-tyrosine synthetase activity (obsolete GO:0102050)","termid":"GO:0102050"}


id: PR:Q9US30
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rsm19 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9US30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S19, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1751.02c","synonyms":[{"name":"Spom972h-rsm19","type":"exact"}],"termid":"PR:Q9US30"}


id: PBO:0078492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile (anticodon AAT) 11-1","termid":"PBO:0078492"}


id: PBO:0048305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase pseudogene 15","termid":"PBO:0048305"}


id: PBO:0051640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMP U3 small nucleolar ribonucleoprotein 4","termid":"PBO:0051640"}


id: PBO:0054274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1664","termid":"PBO:0054274"}


id: GO:0031557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process which directly activates any of the steps required for programmed cell death as a result of a chemical stimulus.","definition_xrefs":["GOC:mah","GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete induction of programmed cell death in response to chemical stimulus (obsolete GO:0031557)","synonyms":[{"name":"induction of programmed cell death in response to chemical stimulus","type":"exact"},{"name":"induction of programmed cell death in response to chemical substance","type":"exact"}],"termid":"GO:0031557"}


id: GO:0046889
data:
  {"annotated_genes":["SJAG_02613","SJAG_04018"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117834],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902648"},{"annotations":[110160],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070452"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of lipids.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of lipid metabolic process","termid":"GO:0045834"},{"relation_name":"is_a","term_name":"regulation of lipid biosynthetic process","termid":"GO:0046890"},{"relation_name":"positively_regulates","term_name":"lipid biosynthetic process","termid":"GO:0008610"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02613":null,"SJAG_04018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of lipid biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of lipid biosynthetic process","type":"narrow"},{"name":"positive regulation of lipid anabolism","type":"exact"},{"name":"positive regulation of lipid biosynthesis","type":"exact"},{"name":"positive regulation of lipid formation","type":"exact"},{"name":"positive regulation of lipid synthesis","type":"exact"},{"name":"positive regulation of lipogenesis","type":"exact"},{"name":"stimulation of lipid biosynthetic process","type":"narrow"},{"name":"up regulation of lipid biosynthetic process","type":"exact"},{"name":"up-regulation of lipid biosynthetic process","type":"exact"},{"name":"upregulation of lipid biosynthetic process","type":"exact"}],"termid":"GO:0046889","terms_by_termid":{"GO:0070452":null,"GO:1902648":null}}


id: RO:0002478
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A child nucleus relationship in which the cells are part of a male organism","direct_ancestors":[{"relation_name":"is_a","term_name":"child_nucleus_of","termid":"RO:0002476"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"child_nucleus_of_in_male","termid":"RO:0002478"}


id: GO:0097047
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A chromosomal region that contains fork pausing elements influencing the progression and merging of DNA replication forks.","definition_xrefs":["GOC:mcc","PMID:20797631","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"chromosome","termid":"GO:0005694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005575","GO:0005694"],"is_obsolete":false,"name":"DNA replication termination region","synonyms":[{"name":"TER","type":"exact"}],"termid":"GO:0097047"}


id: PBO:0069084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 331, pseudogene","termid":"PBO:0069084"}


id: GO:0052521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of phagocytosis, the engulfing by phagocytes of external particulate material, in the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by host of symbiont phagocytosis (obsolete GO:0052521)","synonyms":[{"name":"activation by host of symbiont phagocytosis","type":"narrow"},{"name":"stimulation by host of symbiont phagocytosis","type":"narrow"},{"name":"up regulation by host of symbiont phagocytosis","type":"exact"},{"name":"up-regulation by host of symbiont phagocytosis","type":"exact"},{"name":"upregulation by host of symbiont phagocytosis","type":"exact"}],"termid":"GO:0052521"}


id: PBO:0045895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 gamma pseudogene 7","termid":"PBO:0045895"}


id: PBO:0081364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 200","termid":"PBO:0081364"}


id: SO:0001833
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The variable region of an immunoglobulin polypeptide sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin_region","termid":"SO:0001832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"V_region","synonyms":[{"name":"INSDC_feature:V_region","type":"exact"},{"name":"V region","type":"exact"}],"termid":"SO:0001833"}


id: GO:0098910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in an atrial cardiac muscle cell contributing to the regulation of its contraction. This typically occurs via modulation of the activity or expression of voltage-gated ion channels.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardiac muscle cell contraction","termid":"GO:0086004"},{"relation_name":"is_a","term_name":"regulation of cardiac muscle cell action potential","termid":"GO:0098901"},{"relation_name":"is_a","term_name":"regulation of cardiac conduction","termid":"GO:1903779"},{"relation_name":"regulates","term_name":"atrial cardiac muscle cell action potential","termid":"GO:0086014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of atrial cardiac muscle cell action potential","termid":"GO:0098910"}


id: GO:0102237
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,-6-trans-farnesol + ATP = 2-trans,-6-trans-farnesyl monophosphate + ADP + H+.","definition_xrefs":["GOC:pz","RHEA:61656"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenol kinase activity","termid":"GO:0052673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"ATP:farnesol kinase activity","secondary_identifiers":["MetaCyc:RXN-12304"],"synonyms":[{"name":"ATP-dependent farnesol kinase activity","type":"related"}],"termid":"GO:0102237"}


id: PBO:0036067
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_methyltransferase_activity_(H3-K9_specific)_activity","termid":"PBO:0036067"}


id: SO:0001847
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter element with consensus sequence TTTRTTTACA, bound by transcription factors with a forkhead DNA-binding domain.","definition_xrefs":["PMID:15195092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead_motif","synonyms":[{"name":"forkhead motif","type":"exact"}],"termid":"SO:0001847"}


id: PBO:0085075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-succinyl-5-aminoimidazole-4-carboxamide ribotide synthetase; required for 'de novo' purine nucleotide biosynthesis; red pigment accumulates in mutant cells deprived of adenine; protein abundance increases in response to DNA replication stress","termid":"PBO:0085075"}


id: PBO:0081292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 75a","termid":"PBO:0081292"}


id: PBO:0039922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGEF19 antisense RNA 1","termid":"PBO:0039922"}


id: PBO:0003802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoyltransferase Erf2 (predicted)","termid":"PBO:0003802"}


id: MONDO:0022612
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Brunsting-Perry syndrome","secondary_identifiers":["MEDGEN:725587","UMLS:C1304226"],"synonyms":[{"name":"Brunsting Perry syndrome","type":"related"},{"name":"cicatricial pemphigoid of the Brunsting-Perry type","type":"related"},{"name":"localised cicatricial pemphigoid","type":"related"},{"name":"localized cicatricial pemphigoid","type":"related"}],"termid":"MONDO:0022612","xrefs":{"Monarch":{"xref_id":"0022612"}}}


id: MONDO:0008781
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A juvenile amyotrophic lateral sclerosis that is slowly progressive with concomitantly progressive dementia.","definition_xrefs":["PMID:5692341","DOID:0110067"],"direct_ancestors":[{"relation_name":"is_a","term_name":"juvenile amyotrophic lateral sclerosis","termid":"MONDO:0017593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"juvenile amyotrophic lateral sclerosis with dementia","secondary_identifiers":["MESH:C565956","UMLS:C1859806","OMIM:205200","MEDGEN:395347"],"synonyms":[{"name":"ALS-dementia Complex","type":"related"},{"name":"ALS-dementia complex","type":"exact"},{"name":"amyotrophic lateral sclerosis, juvenile, with dementia","type":"related"}],"termid":"MONDO:0008781","xrefs":{"Monarch":{"xref_id":"0008781"}}}


id: GO:0004328
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: formamide + H2O = formate + NH4.","definition_xrefs":["RHEA:21948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amidase activity","termid":"GO:0004040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016810","GO:0003824"],"is_obsolete":false,"name":"formamidase activity","secondary_identifiers":["UM-BBD_reactionID:r0873","MetaCyc:FORMAMIDASE-RXN","GO:0034566","EC:3.5.1.49","KEGG_REACTION:R00524"],"synonyms":[{"name":"formamide amidohydrolase activity","type":"related"},{"name":"formamide hydrolase activity","type":"exact"}],"termid":"GO:0004328"}


id: MONDO:0009399
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperphosphatemia, polyuria, and seizures","secondary_identifiers":["MESH:C565494","MEDGEN:343444","UMLS:C1855922","OMIM:239350"],"synonyms":[{"name":"hyperphosphatemia, polyuria, and seizures","type":"exact"}],"termid":"MONDO:0009399","xrefs":{"Monarch":{"xref_id":"0009399"}}}


id: PBO:0079879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPK1A antisense RNA 1","termid":"PBO:0079879"}


id: GO:1903483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of maintenance of mitotic actomyosin contractile ring localization.","definition_xrefs":["GO_REF:0000058","GOC:mtg_cell_cycle","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of maintenance of mitotic actomyosin contractile ring localization (obsolete GO:1903483)","synonyms":[{"name":"regulation of cytokinetic ring anchoring involved in mitotic cell cycle","type":"related"},{"name":"regulation of maintenance of contractile ring localisation involved in cell cycle cytokinesis involved in mitotic cell cycle","type":"exact"},{"name":"regulation of maintenance of contractile ring localization involved in cell cycle cytokinesis involved in mitotic cell cycle","type":"exact"},{"name":"regulation of maintenance of contractile ring localization involved in cytokinesis during cell cycle involved in mitotic cell cycle","type":"related"}],"termid":"GO:1903483"}


id: MONDO:0007732
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Holt-Oram syndrome (HOS) is the most common form of heart-hand syndrome and is characterized by skeletal abnormalities of the upper limbs and mild-to-severe congenital cardiac defects.","definition_xrefs":["Orphanet:392"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"heart-hand syndrome","termid":"MONDO:0016432"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005497","MONDO:0005267"],"is_obsolete":false,"name":"Holt-Oram syndrome","secondary_identifiers":["OMIM:142900","MedDRA:10050469","MESH:C535326","MEDGEN:120524","SCTID:19092004","NORD:1248","ICD9:759.89","DOID:0060468","GARD:6666","NCIT:C125592","UMLS:C0265264"],"synonyms":[{"name":"Cardiac-limb syndrome","type":"related"},{"name":"HOLT-Oram syndrome","type":"exact"},{"name":"HOS","type":"exact"},{"name":"HOS 1","type":"related"},{"name":"Holt Oram Syndrome","type":"exact"},{"name":"Holt-Oram syndrome","type":"exact"},{"name":"Hos1","type":"related"},{"name":"atrio digital syndrome","type":"broad"},{"name":"atrio-digital syndrome","type":"broad"},{"name":"atriodigital dysplasia","type":"broad"},{"name":"atriodigital dysplasia type 1","type":"exact"},{"name":"heart-hand syndrome","type":"broad"},{"name":"heart-hand syndrome type 1","type":"exact"},{"name":"heart-hand syndrome, type 1","type":"related"},{"name":"ventriculo-radial syndrome","type":"related"}],"termid":"MONDO:0007732","xrefs":{"Monarch":{"xref_id":"0007732"}}}


id: MONDO:0017345
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Epstein-Barr virus-related tumor","termid":"MONDO:0017342"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Epstein-Barr virus-associated mesenchymal tumor","secondary_identifiers":["UMLS:C5679941","GARD:21149","MEDGEN:1843096","Orphanet:289656"],"synonyms":[{"name":"EBV-associated mesenchymal tumor","type":"exact"},{"name":"EBV-associated mesenchymal tumour","type":"exact"}],"termid":"MONDO:0017345","xrefs":{"Monarch":{"xref_id":"0017345"}}}


id: PBO:0029792
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_actin_cortical_patch","termid":"PBO:0029792"}


id: PBO:0069379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 639, pseudogene","termid":"PBO:0069379"}


id: PBO:0078355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon TTC) 2-1","termid":"PBO:0078355"}


id: GO:0060684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in the transfer of information from an epithelial cell to a mesenchymal cell where it is interpreted.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"epithelial-mesenchymal cell signaling","synonyms":[{"name":"epithelial-mesenchymal cell signalling","type":"exact"}],"termid":"GO:0060684"}


id: MONDO:0002687
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Superior mesenteric artery syndrome (SMAS) is a digestive condition that occurs when the duodenum (the first part of the small intestine) is compressed between two arteries (the aorta and the superior mesenteric artery). This compression causes partial or complete blockage of the duodenum. Symptoms vary based on severity, but can be severely debilitating. Symptoms may include abdominal pain, fullness, nausea, vomiting, and/or weight loss. SMAS typically is due toloss of the mesenteric fat pad (fatty tissue that surrounds the superior mesenteric artery). The most common cause is significant weight loss caused by medical disorders, psychological disorders, or surgery. In younger patients, it most commonly occurs after corrective spinal surgery for scoliosis. Delays in diagnosis may result in significant complications. Depending on the cause and severity, treatment options may include addressing the underlying cause, dietary changes (small feedings or a liquid diet), and/or surgery. Symptoms may not resolve completely after treatment.","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"duodenal obstruction","termid":"MONDO:0002688"},{"relation_name":"is_a","term_name":"aortic disorder","termid":"MONDO:0005561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"superior mesenteric artery syndrome","secondary_identifiers":["MESH:D013478","UMLS:C0038828","DOID:3557","NORD:1955","GARD:7712","MEDGEN:21404","Orphanet:622099","SCTID:197006009","NCIT:C85175"],"synonyms":[{"name":"Arteriomesenteric duodenal compression syndrome","type":"related"},{"name":"Cast syndrome","type":"related"},{"name":"Wilkie syndrome","type":"related"},{"name":"superior mesenteric artery syndrome","type":"exact"},{"name":"superior mesenteric artery syndromic disease","type":"exact"},{"name":"syndromic disease of superior mesenteric artery","type":"exact"},{"name":"vascular compression of the duodenum","type":"related"}],"termid":"MONDO:0002687","xrefs":{"Monarch":{"xref_id":"0002687"}}}


id: PBO:0109284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xylitol dehydrogenase","termid":"PBO:0109284"}


id: PBO:0005805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminopeptidase (predicted)","termid":"PBO:0005805"}


id: PBO:0083261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; 100% of YLR465C overlaps the uncharacterized ORF YLR464W and 86% of YLR465C overlaps the verified gene YRF1-4","termid":"PBO:0083261"}


id: MONDO:0008971
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Pyle disease","termid":"MONDO:0009943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"chondrodysplasia calcificans Metaphysealis","secondary_identifiers":["OMIM:215050","MEDGEN:347809","GARD:10613","UMLS:C1859147","MESH:C565855"],"synonyms":[{"name":"chondrodysplasia calcificans Metaphysealis","type":"exact"}],"termid":"MONDO:0008971","xrefs":{"Monarch":{"xref_id":"0008971"}}}


id: MONDO:0021856
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive, oculo-reno-skeletal syndrome characterized by bilateral atypical macular coloboma, familial juvenile nephronophthisis and mesomelic skeletal dysplasia of upper limbs with bilateral radiohumeral fusion.","definition_xrefs":["PMID:3231430"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"coloboma","termid":"MONDO:0001476"},{"relation_name":"is_a","term_name":"inherited kidney disorder","termid":"MONDO:0100191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"Alsing syndrome","secondary_identifiers":["MEDGEN:444013","UMLS:C2931255","MESH:C536588"],"synonyms":[{"name":"atypical macular coloboma, familial juvenile nephronophthisis and skeletal abnormality","type":"related"}],"termid":"MONDO:0021856","xrefs":{"Monarch":{"xref_id":"0021856"}}}


id: MONDO:0100469
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked form of anosmia, isolated congenital.","definition_xrefs":["MONDO:patterns/x_linked"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anosmia","termid":"MONDO:0010528"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anosmia, isolated congenital, X-linked","secondary_identifiers":["UMLS:C5562112","OMIM:301700","MEDGEN:1794322"],"termid":"MONDO:0100469","xrefs":{"Monarch":{"xref_id":"0100469"}}}


id: SO:0001325
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N2_methylguanosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N2_methylguanosine","secondary_identifiers":["RNAMOD:030"],"synonyms":[{"name":"N2 methylguanosine","type":"exact"},{"name":"N2-methylguanosine","type":"exact"},{"name":"m2G","type":"exact"}],"termid":"SO:0001325"}


id: GO:0051972
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of telomerase activity, the catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Telomerases catalyze extension of the 3'- end of a DNA strand by one deoxynucleotide at a time using an internal RNA template that encodes the telomeric repeat sequence.","definition_xrefs":["EC:2.-.-.-","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of telomerase activity (obsolete GO:0051972)","synonyms":[{"name":"telomerase regulator","type":"exact"}],"termid":"GO:0051972"}


id: PBO:0054148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1515","termid":"PBO:0054148"}


id: PBO:0001872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein Pep5/Vps11-like (predicted)","termid":"PBO:0001872"}


id: GO:0019466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ornithine, via the intermediate proline.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proline metabolic process","termid":"GO:0006560"},{"relation_name":"is_a","term_name":"ornithine catabolic process","termid":"GO:0006593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"ornithine catabolic process via proline","secondary_identifiers":["MetaCyc:ORN-AMINOPENTANOATE-CAT-PWY"],"synonyms":[{"name":"ornithine breakdown via proline","type":"exact"},{"name":"ornithine degradation via proline","type":"exact"}],"termid":"GO:0019466"}


id: PR:Q10331
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear pore complex protein Nup107 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02455","PANTHER:PTHR13003:SF2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin nup107 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC428.01c","secondary_identifiers":["UniProtKB:Q10331"],"synonyms":[{"name":"Spom972h-NUP107","type":"exact"},{"name":"nuclear pore protein nup107 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10331"}


id: GO:0016212
data:
  {"annotated_genes":["SJAG_04988"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74075],"is_not":false,"summary":null,"term":"GO:0016212"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + L-kynurenine = H2O + kynurenate + L-glutamate. The product 4-(2-aminophenyl)-2,4-dioxobutanoate is converted into kynurenate by a spontaneous reaction. Also acts on 3-hydroxykynurenine to form xanthurenate.","definition_xrefs":["EC:2.6.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04988":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016769","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"kynurenine-oxoglutarate transaminase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-893596","Reactome:R-HSA-901097","Reactome:R-HSA-893583"],"synonyms":[{"name":"L-kynurenine aminotransferase activity","type":"related"},{"name":"L-kynurenine:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"kynurenine 2-oxoglutarate transaminase activity","type":"related"},{"name":"kynurenine aminotransferase activity","type":"broad"},{"name":"kynurenine transaminase (cyclizing)","type":"related"},{"name":"kynurenine--oxoglutarate aminotransferase activity","type":"related"},{"name":"kynurenine-oxoglutarate aminotransferase activity","type":"exact"}],"termid":"GO:0016212","terms_by_termid":{"GO:0016212":null}}


id: MONDO:0006652
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Myocardial infarction in which the anterior wall of the heart is involved. Anterior wall myocardial infarction is often caused by occlusion of the left anterior descending coronary artery. It can be categorized as anteroseptal or anterolateral wall myocardial infarction.","definition_xrefs":["MESH:D056988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myocardial infarction","termid":"MONDO:0005068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"anterolateral myocardial infarction","secondary_identifiers":["EFO:1000812","MedDRA:10068109","DOID:5845","icd11.foundation:687792216","UMLS:C0262564","MEDGEN:78086"],"synonyms":[{"name":"acute anterior wall myocardial infarction","type":"related"},{"name":"anterolateral myocardial infarction","type":"exact"},{"name":"anterolateral myocardial infarctions","type":"related"},{"name":"anteroseptal myocardial infarction","type":"related"},{"name":"anteroseptal myocardial infarctions","type":"related"},{"name":"infarction, anterolateral myocardial","type":"related"},{"name":"infarction, anteroseptal myocardial","type":"related"},{"name":"infarctions, anterolateral myocardial","type":"related"},{"name":"infarctions, anteroseptal myocardial","type":"related"},{"name":"myocardial infarction, anterior wall","type":"related"},{"name":"myocardial infarction, anterolateral","type":"related"},{"name":"myocardial infarction, anteroseptal","type":"related"},{"name":"myocardial infarctions, anterolateral","type":"related"},{"name":"myocardial infarctions, anteroseptal","type":"related"}],"termid":"MONDO:0006652","xrefs":{"Monarch":{"xref_id":"0006652"}}}


id: GO:0102640
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: paspalicine + O2 + NADPH + H+ = paspalinine + NADP + H2O.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete paspalinine synthase activity (obsolete GO:0102640)","termid":"GO:0102640"}


id: PBO:0045505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dentin sialophosphoprotein","termid":"PBO:0045505"}


id: PBO:0083071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dihydroxyacetone kinase; required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation","termid":"PBO:0083071"}


id: PBO:0061690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 205","termid":"PBO:0061690"}


id: FYPO:0002416
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which a cell undergoes one or a few rounds of cell division before cells die, resulting in the formation a colony that contains only a few inviable cells in which cell shape is altered and cell volume is larger than normal. Up to 6 rounds of cell division (generating 64 cells) may be observed, but 3 divisions or fewer is more typical.","definition_xrefs":["PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable microcolony, swollen cells, abnormal cell shape (obsolete FYPO:0002416)","synonyms":[{"name":"inviable microcolonies swollen misshapen cells","type":"related"},{"name":"inviable microcolony, enlarged vegetative cells with abnormal cell shape","type":"related"},{"name":"inviable microcolony, large vegetative cells with abnormal cell shape","type":"related"},{"name":"inviable microcolony, vegetative cells with increased cell size and abnormal cell shape","type":"related"},{"name":"inviable microcolony, vegetative cells with increased cell volume and abnormal cell shape","type":"exact"}],"termid":"FYPO:0002416"}


id: GO:0018916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving nitrobenzene (nitrobenzol), a derivative of benzene with an NO2 group attached to the ring. It is a yellow aromatic liquid used in perfumery and manufactured in large quantities in the preparation of aniline.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nitrobenzene metabolic process","secondary_identifiers":["UM-BBD_pathwayID:nb"],"synonyms":[{"name":"nitrobenzene metabolism","type":"exact"}],"termid":"GO:0018916"}


id: MONDO:0014156
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial atrial fibrillation in which the cause of the disease is a mutation in the SCN2B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial atrial fibrillation","termid":"MONDO:0018054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"atrial fibrillation, familial, 14","secondary_identifiers":["GARD:15955","MEDGEN:815642","OMIM:615378","UMLS:C3809312"],"synonyms":[{"name":"ATFB14","type":"related"},{"name":"SCN2B familial atrial fibrillation","type":"exact"},{"name":"atrial fibrillation, familial, 14","type":"exact"},{"name":"atrial fibrillation, familial, type 14","type":"exact"},{"name":"familial atrial fibrillation caused by mutation in SCN2B","type":"exact"}],"termid":"MONDO:0014156","xrefs":{"Monarch":{"xref_id":"0014156"}}}


id: PBO:0063521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDXP divergent transcript","termid":"PBO:0063521"}


id: GO:0045996
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involving pheromones that stops, prevents or reduces the rate of transcription.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transcription by pheromones (obsolete GO:0045996)","synonyms":[{"name":"down regulation of transcription by pheromones","type":"exact"},{"name":"down-regulation of transcription by pheromones","type":"exact"},{"name":"downregulation of transcription by pheromones","type":"exact"},{"name":"inhibition of transcription by pheromones","type":"narrow"}],"termid":"GO:0045996"}


id: GO:2001172
data:
  {"annotated_genes":["SJAG_05006"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96908],"is_not":false,"summary":null,"term":"GO:2001172"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glucose catabolic process to ethanol.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of glucose metabolic process","termid":"GO:0010907"},{"relation_name":"is_a","term_name":"regulation of glycolytic fermentation to ethanol","termid":"GO:2001154"},{"relation_name":"positively_regulates","term_name":"glycolytic fermentation to ethanol","termid":"GO:0019655"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006091"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0044281","GO:0006091","GO:0008150"],"is_obsolete":false,"name":"positive regulation of glycolytic fermentation to ethanol","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of ethanol fermentation","type":"exact"},{"name":"positive regulation of glucose fermentation to ethanol","type":"exact"}],"termid":"GO:2001172","terms_by_termid":{"GO:2001172":null}}


id: MONDO:0012105
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A small-vessel necrotizing vasculitis characterized by the association of inflammation of the vessel wall and peri- and extravascular granulomatosis.","definition_xrefs":["Orphanet:900"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete secondary glomerular disease (obsolete MONDO:0019724)","termid":"MONDO:0019724"},{"relation_name":"is_a","term_name":"glomerulonephritis","termid":"MONDO:0002462"},{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"},{"relation_name":"is_a","term_name":"anti-neutrophil cytoplasmic antibody-associated vasculitis","termid":"MONDO:0015492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005240"],"is_obsolete":false,"name":"granulomatosis with polyangiitis","secondary_identifiers":["NANDO:1201009","NCIT:C123111","MEDGEN:811223","UMLS:C3495801","MESH:D014890","NANDO:2200424","MedDRA:10047888","NCIT:C3444","ICD10CM:M31.3","EFO:0005297","NANDO:1200263","SCTID:195353004","DOID:12132","NORD:1840","OMIM:608710","icd11.foundation:1020056159","GARD:7880","ICD9:446.4"],"synonyms":[{"name":"ANCA-associated vasculitis","type":"broad"},{"name":"GPA","type":"exact"},{"name":"Midline granulomatosis","type":"related"},{"name":"Wegener granulomatosis","type":"exact"},{"name":"Wegener's granulomatosis","type":"exact"},{"name":"Wegener's syndrome","type":"exact"},{"name":"Wg","type":"broad"},{"name":"granulomatosis - Wegener's","type":"exact"},{"name":"granulomatosis with polyangiitis","type":"exact"},{"name":"necrotizing respiratory granulomatosis","type":"exact"},{"name":"pauci-immune glomerulonephritis associated with granulomatosis with polyangiitis","type":"exact"}],"termid":"MONDO:0012105","xrefs":{"Monarch":{"xref_id":"0012105"}}}


id: GO:0071847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by the binding of tumor necrosis factor ligand superfamily member 11 (TNFSF11) to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:18606301","GOC:BHF","GOC:signaling"],"gene_count":0,"genotype_count":0,"name":"obsolete TNFSF11-mediated signaling pathway (obsolete GO:0071847)","synonyms":[{"name":"RANKL-mediated signaling pathway","type":"exact"},{"name":"TNF-related activation-induced cytokine-mediated signaling pathway","type":"exact"},{"name":"TNFSF11-mediated signalling pathway","type":"exact"},{"name":"receptor activator of nuclear factor kappa-B ligand signaling pathway","type":"exact"},{"name":"tumor necrosis factor superfamily member 11-mediated signaling pathway","type":"exact"}],"termid":"GO:0071847"}


id: PBO:0054143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1509","termid":"PBO:0054143"}


id: PATO:0000651
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity.","definition_xrefs":["PATOC:nw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unfused from","synonyms":[{"name":"unfused","type":"exact"}],"termid":"PATO:0000651"}


id: GO:0006551
data:
  {"annotated_genes":["SJAG_06635","SJAG_04098","SJAG_00396","SJAG_03985","SJAG_03562","SJAG_02841","SJAG_03243","SJAG_04149"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111409],"is_not":false,"summary":null,"term":"GO:0006551"},{"annotations":[75183,77298,80296,91024,59355,103612,113562],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009098"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving L-leucine, 2-amino-4-methylpentanoic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate family amino acid metabolic process","termid":"GO:0009078"},{"relation_name":"is_a","term_name":"branched-chain amino acid metabolic process","termid":"GO:0009081"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00396":null,"SJAG_02841":null,"SJAG_03243":null,"SJAG_03562":null,"SJAG_03985":null,"SJAG_04098":null,"SJAG_04149":null,"SJAG_06635":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"L-leucine metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"L-leucine metabolism","type":"exact"},{"name":"leucine metabolic process","type":"broad"}],"termid":"GO:0006551","terms_by_termid":{"GO:0006551":null,"GO:0009098":null}}


id: PBO:0072159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 36","termid":"PBO:0072159"}


id: PBO:0043769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly factor COX18","termid":"PBO:0043769"}


id: PBO:0074093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 26 member 8","termid":"PBO:0074093"}


id: PBO:0065102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase cAMP-dependent type II regulatory subunit alpha","termid":"PBO:0065102"}


id: PBO:0011120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase type 2A regulator, PTPA family Ypa1","termid":"PBO:0011120"}


id: GO:0043265
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Granule free cytoplasm, lying immediately below the plasma membrane.","definition_xrefs":["GOC:curators","PMID:12211103"],"gene_count":0,"genotype_count":0,"name":"obsolete ectoplasm (obsolete GO:0043265)","termid":"GO:0043265"}


id: PBO:0028761
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-post-anaphase_array_absent_from_cell","termid":"PBO:0028761"}


id: GO:1902958
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitochondrial electron transport, NADH to ubiquinone.","definition_xrefs":["GOC:dph","GO_REF:0000058","PMID:23530063","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular respiration","termid":"GO:1901857"},{"relation_name":"is_a","term_name":"regulation of mitochondrial electron transport, NADH to ubiquinone","termid":"GO:1902956"},{"relation_name":"positively_regulates","term_name":"mitochondrial electron transport, NADH to ubiquinone","termid":"GO:0006120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mitochondrial electron transport, NADH to ubiquinone","synonyms":[{"name":"activation of complex I (NADH to ubiquinone)","type":"related"},{"name":"activation of mitochondrial electron transport, NADH to ubiquinone","type":"narrow"},{"name":"activation of oxidative phosphorylation, NADH to ubiquinone","type":"narrow"},{"name":"positive regulation of complex I (NADH to ubiquinone)","type":"related"},{"name":"positive regulation of oxidative phosphorylation, NADH to ubiquinone","type":"exact"},{"name":"up regulation of complex I (NADH to ubiquinone)","type":"related"},{"name":"up regulation of mitochondrial electron transport, NADH to ubiquinone","type":"exact"},{"name":"up regulation of oxidative phosphorylation, NADH to ubiquinone","type":"exact"},{"name":"up-regulation of complex I (NADH to ubiquinone)","type":"related"},{"name":"up-regulation of mitochondrial electron transport, NADH to ubiquinone","type":"exact"},{"name":"up-regulation of oxidative phosphorylation, NADH to ubiquinone","type":"exact"},{"name":"upregulation of complex I (NADH to ubiquinone)","type":"related"},{"name":"upregulation of mitochondrial electron transport, NADH to ubiquinone","type":"exact"},{"name":"upregulation of oxidative phosphorylation, NADH to ubiquinone","type":"exact"}],"termid":"GO:1902958"}


id: MONDO:0011687
data:
  {"annotated_genes":["SJAG_02919","SJAG_04567","SJAG_03815"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87418,87419,87420],"is_not":false,"summary":null,"term":"MONDO:0011687"}]},"cv_name":"mondo","definition":"Autosomal dominant Charcot-Marie-Tooth disease type 2F (CMT2F) is a form of axonal Charcot-Marie-Tooth disease, a peripheral sensorimotor neuropathy. CMT2F is characterized by symmetric weakness primarily occurring in the lower limbs (distal muscles in a majority of cases) and reaching the arms only after 5 to 10 years, occasional and predominantly distal sensory loss and reduced tendon reflexes. CMT2F presents with gait anomaly between the 1st and 6th decade and early onset is generally associated to a more severe phenotype which may include foot drop.","definition_xrefs":["Orphanet:99940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02919":null,"SJAG_03815":null,"SJAG_04567":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease axonal type 2F","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:719510006","GARD:9194","DOID:0110163","MEDGEN:335784","MESH:C535413","OMIM:606595","UMLS:C1847823"],"synonyms":[{"name":"CMT 2F","type":"related"},{"name":"CMT2F","type":"exact"},{"name":"Charcot Marie Tooth disease type 2F","type":"related"},{"name":"Charcot-Marie-Tooth disease type 2 caused by mutation in HSPB1","type":"exact"},{"name":"Charcot-Marie-Tooth disease type 2F","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2F","type":"related"},{"name":"Charcot-Marie-Tooth disease, neuronal, type 2F","type":"related"},{"name":"Charcot-Marie-Tooth neuronal type 2F","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy type 2F","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, type 2F","type":"related"},{"name":"HSPB1 Charcot-Marie-Tooth disease type 2","type":"exact"},{"name":"autosomal dominant Charcot-Marie-Tooth disease type 2F","type":"exact"}],"termid":"MONDO:0011687","terms_by_termid":{"MONDO:0011687":null},"xrefs":{"Monarch":{"xref_id":"0011687"}}}


id: PBO:0041580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 22 open reading frame 15","termid":"PBO:0041580"}


id: GO:1902672
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any ciliary basal body that is part of a right anterior flagellum found in Giardia species (trophozoite stage).","definition_xrefs":["PMID:5961344","GOC:TermGenie","PMID:16607022","GO_REF:0000064","GOC:giardia","ISBN:9780124260207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliary basal body","termid":"GO:0036064"},{"relation_name":"part_of","term_name":"right anterior flagellum","termid":"GO:0097555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"right anterior basal body","synonyms":[{"name":"cilial basal body of right anterior cilium","type":"exact"},{"name":"cilial basal body of right anterior flagellum","type":"exact"},{"name":"ciliary basal body of right anterior cilium","type":"exact"},{"name":"ciliary basal body of right anterior flagellum","type":"exact"},{"name":"cilium basal body of right anterior cilium","type":"exact"},{"name":"cilium basal body of right anterior flagellum","type":"exact"},{"name":"microtubule basal body of right anterior cilium","type":"exact"},{"name":"microtubule basal body of right anterior flagellum","type":"exact"},{"name":"right anterior flagellum ciliary basal body","type":"exact"}],"termid":"GO:1902672"}


id: GO:2000669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of dendritic cell apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte apoptotic process","termid":"GO:2000107"},{"relation_name":"is_a","term_name":"regulation of dendritic cell apoptotic process","termid":"GO:2000668"},{"relation_name":"negatively_regulates","term_name":"dendritic cell apoptotic process","termid":"GO:0097048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dendritic cell apoptotic process","synonyms":[{"name":"negative regulation of dendritic cell apoptosis","type":"narrow"}],"termid":"GO:2000669"}


id: PBO:0091176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Siva family protein","termid":"PBO:0091176"}


id: MONDO:0100138
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mitochondrial myopathy caused by defects in the MICOS subunit gene APOO (MIC26). Modelling in yeast and flies demonstrate an inability to insert MICOS complex into the inner mitohondrial membrane. Associated symptoms include, lactic acidosis, cognitive impairment and autistic features.","definition_xrefs":["PMID:32439808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"inborn mitochondrial myopathy","termid":"MONDO:0009637"},{"relation_name":"is_a","term_name":"X-linked recessive disease","termid":"MONDO:0020605"},{"relation_name":"is_a","term_name":"hereditary neuromuscular disease","termid":"MONDO:0100546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336","MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"X-linked recessive mitochondrial myopathy","synonyms":[{"name":"X-linked recessive mitochondrial myopathy, lactic acidosis, cognitive impairment and autistic features","type":"exact"}],"termid":"MONDO:0100138","xrefs":{"Monarch":{"xref_id":"0100138"}}}


id: GO:0052834
data:
  {"annotated_genes":["SJAG_03739"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77625],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008934"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: myo-inositol phosphate + H2O = myo-inositol + phosphate.","definition_xrefs":["EC:3.1.3.25"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol phosphate phosphatase activity","termid":"GO:0052745"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03739":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"inositol monophosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:RXN-10949","RHEA:24056"],"synonyms":[{"name":"L-myo-inositol-phosphate phosphatase activity","type":"related"},{"name":"inositol phosphatase activity","type":"related"},{"name":"inositol-1(or 4)-monophosphatase activity","type":"broad"},{"name":"inositol-phosphate phosphatase activity","type":"related"},{"name":"myo-inositol monophosphatase activity","type":"related"},{"name":"myo-inositol phosphatase activity","type":"related"},{"name":"myo-inositol-1(or 4)-phosphate phosphohydrolase activity","type":"broad"},{"name":"myo-inositol-phosphatase activity","type":"related"},{"name":"myo-inositol-phosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0052834","terms_by_termid":{"GO:0008934":null}}


id: GO:0009081
data:
  {"annotated_genes":["SJAG_04149","SJAG_04098","SJAG_00944","SJAG_06635","SJAG_00396","SJAG_03562","SJAG_03243","SJAG_00107","SJAG_03985","SJAG_00830","SJAG_02841"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103611,110746,108632,111408,113561,104095,91023],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901705"},{"annotations":[113562,75183,77298,80296,103612,59355,91024],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009098"},{"annotations":[111409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006551"},{"annotations":[77348,76456,64048,58688,80297],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009099"},{"annotations":[73443],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006574"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid metabolic process","termid":"GO:0006520"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00107":null,"SJAG_00396":null,"SJAG_00830":null,"SJAG_00944":null,"SJAG_02841":null,"SJAG_03243":null,"SJAG_03562":null,"SJAG_03985":null,"SJAG_04098":null,"SJAG_04149":null,"SJAG_06635":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"branched-chain amino acid metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"branched chain family amino acid metabolism","type":"exact"}],"termid":"GO:0009081","terms_by_termid":{"GO:0006551":null,"GO:0006574":null,"GO:0009098":null,"GO:0009099":null,"GO:1901705":null}}


id: GO:0043530
data:
  {"annotated_genes":["SJAG_01231"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114995],"is_not":false,"summary":null,"term":"GO:0043530"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine 5'-monophosphoramidate + H2O = AMP + NH4+. Other substrates include AMP-morpholidate, AMP-N-alanine methyl ester and AMP-alpha-acetyl lysine methyl ester.","definition_xrefs":["RHEA:67916","PMID:11805111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01231":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"adenosine 5'-monophosphoramidase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"adenosine 5' monophosphoramidase activity","type":"exact"},{"name":"adenosine 5'-monophosphoramidate hydrolase activity","type":"exact"}],"termid":"GO:0043530","terms_by_termid":{"GO:0043530":null}}


id: GO:1905653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of artery morphogenesis.","definition_xrefs":["PMID:27389411","GOC:BHF_miRNA","GO_REF:0000058","GOC:TermGenie","GOC:BHF","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of artery morphogenesis","termid":"GO:1905651"},{"relation_name":"positively_regulates","term_name":"artery morphogenesis","termid":"GO:0048844"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of artery morphogenesis","synonyms":[{"name":"activation of arterial morphogenesis","type":"narrow"},{"name":"activation of arteriogenesis","type":"narrow"},{"name":"activation of artery morphogenesis","type":"narrow"},{"name":"positive regulation of arterial morphogenesis","type":"exact"},{"name":"positive regulation of arteriogenesis","type":"exact"},{"name":"up regulation of arterial morphogenesis","type":"exact"},{"name":"up regulation of arteriogenesis","type":"exact"},{"name":"up regulation of artery morphogenesis","type":"exact"},{"name":"up-regulation of arterial morphogenesis","type":"exact"},{"name":"up-regulation of arteriogenesis","type":"exact"},{"name":"up-regulation of artery morphogenesis","type":"exact"},{"name":"upregulation of arterial morphogenesis","type":"exact"},{"name":"upregulation of arteriogenesis","type":"exact"},{"name":"upregulation of artery morphogenesis","type":"exact"}],"termid":"GO:1905653"}


id: MONDO:0005853
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm composed of a carcinomatous epithelial component and a sarcomatous mesenchymal component. Representative examples include malignant mixed mesodermal (Mullerian) tumor of the female reproductive system and carcinosarcoma of the salivary gland and the lung.","definition_xrefs":["NCIT:C3729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cancer","termid":"MONDO:0004992"},{"relation_name":"is_a","term_name":"mixed neoplasm","termid":"MONDO:0021043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant mixed neoplasm","secondary_identifiers":["EFO:1000356","ICDO:8940/3","MESH:D018198","MEDGEN:64618","DOID:154","UMLS:C0206625"],"synonyms":[{"name":"malignant mixed cancer","type":"exact"},{"name":"malignant mixed neoplasm","type":"exact"},{"name":"malignant mixed tumor","type":"exact"},{"name":"malignant mixed tumors","type":"related"},{"name":"malignant mixed tumour","type":"exact"},{"name":"malignant mixed tumours","type":"related"},{"name":"mixed cell type cancer","type":"broad"},{"name":"mixed neoplasm","type":"broad"},{"name":"mixed neoplasm, malignant","type":"exact"},{"name":"mixed tumor","type":"broad"},{"name":"mixed tumor, malignant","type":"exact"},{"name":"mixed tumor, malignant (morphologic abnormality)","type":"exact"},{"name":"mixed tumor, malignant, NOS (morphologic abnormality)","type":"exact"},{"name":"mixed tumors, malignant","type":"related"},{"name":"mixed tumour","type":"broad"},{"name":"tumor, malignant mixed","type":"related"},{"name":"tumor, mixed, malignant","type":"exact"},{"name":"tumors, malignant mixed","type":"related"}],"termid":"MONDO:0005853","xrefs":{"Monarch":{"xref_id":"0005853"}}}


id: MOD:00314
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a glycine residue to glycine cholesterol ester.","definition_xrefs":["ChEBI:143135","PubMed:8824192","RESID:AA0309","PubMed:11111088","Unimod:432#C-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified glycine residue","termid":"MOD:00908"},{"relation_name":"is_a","term_name":"lipoconjugated residue","termid":"MOD:01155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"glycine cholesterol ester","synonyms":[{"name":"C-cholesterol","type":"related"},{"name":"LIPID Cholesterol glycine ester","type":"exact"},{"name":"cholesterol ester","type":"related"},{"name":"cholesteryl glycinate","type":"exact"},{"name":"glycine cholest-5-en-3beta-ol ester","type":"exact"},{"name":"glycine cholesterol ester","type":"exact"},{"name":"hedgehog lipophilic adduct","type":"exact"}],"termid":"MOD:00314"}


id: GO:0062044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or decreases the rate, frequency or extent of cardiac epithelial to mesenchymal transition, a transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell.","definition_xrefs":["PMID:20951801","GOC:BFH","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epithelial to mesenchymal transition","termid":"GO:0010719"},{"relation_name":"is_a","term_name":"regulation of cardiac epithelial to mesenchymal transition","termid":"GO:0062042"},{"relation_name":"negatively_regulates","term_name":"cardiac epithelial to mesenchymal transition","termid":"GO:0060317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cardiac epithelial to mesenchymal transition","termid":"GO:0062044"}


id: PBO:0060209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"musculoskeletal, embryonic nuclear protein 1","termid":"PBO:0060209"}


id: PR:O14160
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vrs2 gene.","definition_xrefs":["UniProtKB:O14160","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"valine--tRNA ligase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4A8.08c","synonyms":[{"name":"Spom972h-vrs2","type":"exact"},{"name":"ValRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"valyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14160"}


id: MONDO:0014321
data:
  {"annotated_genes":["SJAG_03698","SJAG_03418"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86953,86954],"is_not":false,"summary":null,"term":"MONDO:0014321"}]},"cv_name":"mondo","definition":"Any primary ovarian failure in which the cause of the disease is a mutation in the STAG3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03418":null,"SJAG_03698":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"premature ovarian failure 8","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080865","MEDGEN:816697","UMLS:C3810367","OMIM:615723"],"synonyms":[{"name":"POF8","type":"related"},{"name":"STAG3 primary ovarian failure","type":"exact"},{"name":"premature ovarian failure 8","type":"exact"},{"name":"premature ovarian failure type 8","type":"exact"},{"name":"primary ovarian failure caused by mutation in STAG3","type":"exact"}],"termid":"MONDO:0014321","terms_by_termid":{"MONDO:0014321":null},"xrefs":{"Monarch":{"xref_id":"0014321"}}}


id: PBO:0051371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 3D-25 (pseudogene)","termid":"PBO:0051371"}


id: PBO:0056882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MICOS10 pseudogene 2","termid":"PBO:0056882"}


id: GO:0018296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a protein-FAD linkage via O4'-(8-alpha-FAD)-L-tyrosine.","definition_xrefs":["RESID:AA0145"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-FAD linkage via O4'-(8alpha-FAD)-L-tyrosine (obsolete GO:0018296)","termid":"GO:0018296"}


id: PBO:0001117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO interaction motif","termid":"PBO:0001117"}


id: PBO:0057167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 320d-1","termid":"PBO:0057167"}


id: GO:0008164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete organophosphorus resistance (obsolete GO:0008164)","synonyms":[{"name":"organophosphorus resistance","type":"exact"}],"termid":"GO:0008164"}


id: PATO:0000944
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sharpness","synonyms":[{"name":"apiculate","type":"exact"}],"termid":"PATO:0000944"}


id: GO:0044148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism.","definition_xrefs":["GOC:pamgo_curators","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of growth of symbiont involved in interaction with host (obsolete GO:0044148)","synonyms":[{"name":"positive regulation of growth of symbiont during interaction with host","type":"related"}],"termid":"GO:0044148"}


id: GO:0033191
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 2-pyrone + oxalacetate = macrophomate.","definition_xrefs":["GOC:cb","PMID:10984474"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transketolase or transaldolase activity","termid":"GO:0016744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016744"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016744","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"macrophomate synthase activity","termid":"GO:0033191"}


id: GO:0004283
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the preferential cleavage of Lys-Xaa > Arg-Xaa; higher selectivity than trypsin. Converts fibrin into soluble products.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete plasmin activity (obsolete GO:0004283)","synonyms":[{"name":"actase activity","type":"related"},{"name":"fibrinase activity","type":"related"},{"name":"fibrinolysin activity","type":"related"},{"name":"plasmin activity","type":"exact"},{"name":"serum tryptase activity","type":"related"},{"name":"thrombolysin","type":"related"}],"termid":"GO:0004283"}


id: PBO:0056801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane frizzled-related protein","termid":"PBO:0056801"}


id: GO:0034669
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An integrin complex that comprises one alpha4 subunit and one beta7 subunit.","definition_xrefs":["PMID:12297042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integrin complex","termid":"GO:0008305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"integrin alpha4-beta7 complex","synonyms":[{"name":"ITGA4-ITGB7 complex","type":"narrow"},{"name":"alpha4-beta7 integrin complex","type":"exact"}],"termid":"GO:0034669"}


id: PBO:0070534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7","termid":"PBO:0070534"}


id: PBO:0078681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (TTT) 14-1","termid":"PBO:0078681"}


id: PBO:0074346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 5","termid":"PBO:0074346"}


id: MONDO:1010442
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cardiomyopathy that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiomyopathy, non-human animal","termid":"MONDO:1010010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiomyopathy, domestic cat","secondary_identifiers":["OMIA:000160-9685"],"termid":"MONDO:1010442","xrefs":{"Monarch":{"xref_id":"1010442"}}}


id: PATO:0000685
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000685 relative incidence value (obsolete PATO:0000685)","termid":"PATO:0000685"}


id: GO:0102041
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate + (2-amino-4-hydroxy-7,8-dihydropteridin-6-yl)methyl diphosphate = N-[(7,8-dihydropterin-6-yl)methyl]-4-(beta-D-ribofuranosyl)aniline 5'-phosphate + diphosphoric acid.","definition_xrefs":["RHEA:35951","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016765","GO:0003824"],"is_obsolete":false,"name":"7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase","secondary_identifiers":["EC:2.5.1.105","MetaCyc:RXN-10009"],"termid":"GO:0102041"}


id: GO:0034129
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of MyD88-independent toll-like receptor signaling pathway.","definition_xrefs":["PMID:16551253","PMID:17328678","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of toll-like receptor signaling pathway","termid":"GO:0034123"},{"relation_name":"is_a","term_name":"regulation of MyD88-independent toll-like receptor signaling pathway","termid":"GO:0034127"},{"relation_name":"positively_regulates","term_name":"MyD88-independent toll-like receptor signaling pathway","termid":"GO:0002756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of MyD88-independent toll-like receptor signaling pathway","synonyms":[{"name":"positive regulation of MyD88-independent TLR signaling pathway","type":"exact"},{"name":"positive regulation of MyD88-independent toll-like receptor","type":"exact"},{"name":"positive regulation of MyD88-independent toll-like receptor signalling pathway","type":"exact"}],"termid":"GO:0034129"}


id: GO:1901118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cephamycin C.","definition_xrefs":["GOC:yaf","UniPathway:UPA00183","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-lactam antibiotic biosynthetic process","termid":"GO:0030654"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"cephamycin C metabolic process","termid":"GO:1901116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"cephamycin C biosynthetic process","synonyms":[{"name":"cephamycin C anabolism","type":"exact"},{"name":"cephamycin C biosynthesis","type":"exact"},{"name":"cephamycin C formation","type":"exact"},{"name":"cephamycin C synthesis","type":"exact"}],"termid":"GO:1901118"}


id: FYPO:0004736
data:
  {"alleles_by_uniquename":{"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[119653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001369"}],"single_locus_phenotype":[{"annotations":[119536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002026"},{"annotations":[119654],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001369"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the position, composition or morphology of the actomyosin contractile ring is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton during vegetative growth","termid":"FYPO:0002398"},{"relation_name":"output_of","term_name":"abnormal actomyosin contractile ring organization","termid":"FYPO:0004738"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02392":null,"SJAG_04280":null,"SJAG_04522":null},"genotype_count":3,"genotypes_by_uniquename":{"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"rga4delta":{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0004803","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04280","SJAG_04522"],"name":"abnormal actomyosin contractile ring","references_by_uniquename":{"PMID:25866389":null,"PMID:30664646":null},"single_locus_annotated_genes":["SJAG_02392","SJAG_04522"],"single_locus_genotype_uniquenames":["pom1delta","rga4delta"],"synonyms":[{"name":"abnormal actomyosin contractile ring during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring during vegetative growth","type":"exact"},{"name":"abnormal contractile ring","type":"exact"},{"name":"abnormal cytokinetic contractile ring","type":"exact"},{"name":"abnormal mitotic contractile ring","type":"exact"}],"termid":"FYPO:0004736","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000338":null,"FYPO:0001369":null,"FYPO:0002026":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0052178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism involving chitin in the cell wall of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete metabolism by symbiont of host cell wall chitin (obsolete GO:0052178)","termid":"GO:0052178"}


id: GO:0036456
data:
  {"annotated_genes":["SJAG_00419"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95898],"is_not":false,"summary":null,"term":"GO:0036456"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-methionine (S)-S-oxide + thioredoxin -> L-methionine + thioredoxin disulfide + H2O.","definition_xrefs":["GOC:vw","RHEA:19995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-methionine:thioredoxin-disulfide S-oxidoreductase activity","termid":"GO:0033744"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00419":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"L-methionine-(S)-S-oxide reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0036456","terms_by_termid":{"GO:0036456":null}}


id: GO:0030574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.","definition_xrefs":["GOC:mah","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"collagen metabolic process","termid":"GO:0032963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"collagen catabolic process","secondary_identifiers":["Reactome:R-HSA-1442490"],"synonyms":[{"name":"collagen breakdown","type":"exact"},{"name":"collagen catabolism","type":"exact"},{"name":"collagen degradation","type":"exact"}],"termid":"GO:0030574"}


id: PBO:0069689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 968, pseudogene","termid":"PBO:0069689"}


id: PBO:0028798
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_replication_fork_arrest_at_rDNA_repeats","termid":"PBO:0028798"}


id: GO:0072295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the distal tubule of the metanephric nephron acquires its identity.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of distal tubule identity","termid":"GO:0072084"},{"relation_name":"is_a","term_name":"specification of metanephric nephron tubule identity","termid":"GO:0072293"},{"relation_name":"part_of","term_name":"metanephric distal tubule morphogenesis","termid":"GO:0072287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of metanephric distal tubule identity","termid":"GO:0072295"}


id: GO:0089706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-ornithine out of the vacuole, across the vacuolar membrane.","definition_xrefs":["PMID:21307582"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane export from vacuole","termid":"GO:0032974"},{"relation_name":"is_a","term_name":"L-ornithine transmembrane transport","termid":"GO:1903352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"L-ornithine transmembrane export from vacuole","termid":"GO:0089706"}


id: PBO:0039471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 18A","termid":"PBO:0039471"}


id: GO:0047023
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD(P)+ + androsterone = NAD(P)H + H+ + 5-alpha-androstane-3,17-dione.","definition_xrefs":["EC:1.1.1.209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"androsterone dehydrogenase [NAD(P)+] activity","synonyms":[{"name":"3(17)alpha-hydroxysteroid dehydrogenase activity","type":"broad"},{"name":"3(or 17)-alpha-hydroxysteroid dehydrogenase activity","type":"broad"},{"name":"3(or 17)alpha-hydroxysteroid dehydrogenase activity","type":"broad"},{"name":"3(or 17)alpha-hydroxysteroid:NAD(P)+ oxidoreductase activity","type":"broad"}],"termid":"GO:0047023"}


id: PR:G2TRT6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC417.16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRT6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC417.16","synonyms":[{"name":"Spom972h-SPCC417.16","type":"exact"}],"termid":"PR:G2TRT6"}


id: PBO:0042990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHEK2 pseudogene 3","termid":"PBO:0042990"}


id: FYPO:0004707
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain more half-mer polysomes in the cytosol than normal. A half-mer polysome is a complex consisting of an mRNA bound to a single small ribosomal subunit, followed by one or more complete bound ribosomes.","definition_xrefs":["PMID:26122634","PMID:18611858","PomBase:mah","PMID:19806183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of macromolecular complex during vegetative growth","termid":"FYPO:0003684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cytosolic half-mer polysome level","synonyms":[{"name":"cytosolic half-mer polysomes present at increased level","type":"exact"},{"name":"increased cytosolic half-mer polysome level during mitotic cell cycle","type":"related"},{"name":"increased cytosolic half-mer polysome level during vegetative growth","type":"exact"},{"name":"increased cytosolic halfmer polysome level","type":"exact"},{"name":"increased level of cytosolic half-mer polysomes","type":"related"}],"termid":"FYPO:0004707"}


id: GO:1903600
data:
  {"annotated_genes":["SJAG_00691","SJAG_00283"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[78757,95825],"is_not":false,"summary":null,"term":"GO:1903600"}]},"cv_name":"cellular_component","definition":"A protein complex which is capable of glutaminase activity.","definition_xrefs":["GO_REF:0000088","GOC:TermGenie","PMID:14764090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00283":null,"SJAG_00691":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"glutaminase complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Sno1p-Snz1p","type":"exact"}],"termid":"GO:1903600","terms_by_termid":{"GO:1903600":null}}


id: MONDO:0018014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Transient neonatal multiple acyl-CoA dehydrogenase deficiency describes a very rare condition where a maternal riboflavin deficiency causes an infant to present with manifestations similar to those seen in multiple acyl-CoA dehydrogenase (MAD) deficiency such as poor suck, metabolic acidosis and hypoglycemia, but that resolves completely with oral riboflavin. In the one patient described haploinsufficiency of the human riboflavin transporter (hRFT1) was described in the mother.","definition_xrefs":["Orphanet:329942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA dehydrogenase deficiency","termid":"MONDO:0017714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"transient neonatal multiple acyl-CoA dehydrogenase deficiency","secondary_identifiers":["GARD:21498","MEDGEN:1373921","SCTID:723552005","UMLS:C4509950"],"synonyms":[{"name":"transient neonatal MAD deficiency","type":"exact"},{"name":"transient neonatal MADD","type":"exact"},{"name":"transient neonatal glutaric acidemia type 2","type":"exact"},{"name":"transient neonatal glutaric aciduria type 2","type":"exact"}],"termid":"MONDO:0018014","xrefs":{"Monarch":{"xref_id":"0018014"}}}


id: GO:0046199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cresol, a mixture of the aromatic alcohol isoforms o-, p-, and m-cresol, which is obtained from coal tar or petroleum. The isomers are used as disinfectants, textile scouring agents, surfactants and as intermediates in the manufacture of salicylaldehyde, coumarin, and herbicides as well as being a major component of creosote.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"cresol metabolic process","termid":"GO:0042212"},{"relation_name":"is_a","term_name":"toluene-containing compound catabolic process","termid":"GO:0072491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cresol catabolic process","synonyms":[{"name":"cresol breakdown","type":"exact"},{"name":"cresol catabolism","type":"exact"},{"name":"cresol degradation","type":"exact"}],"termid":"GO:0046199"}


id: PR:O94258
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An exportin-T that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03793","PRO:DNx","PANTHER:PTHR15952:SF11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exportin-T (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.09c","secondary_identifiers":["UniProtKB:O94258"],"synonyms":[{"name":"Spom972h-XPOT","type":"exact"},{"name":"exportin(tRNA) (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"karyopherin-beta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNA exportin (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94258"}


id: PBO:0056461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MBL associated serine protease 1","termid":"PBO:0056461"}


id: PBO:0015693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase PP1 subfamily, Dis2","termid":"PBO:0015693"}


id: GO:0030500
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of bone mineralization.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ossification","termid":"GO:0030278"},{"relation_name":"is_a","term_name":"regulation of biomineral tissue development","termid":"GO:0070167"},{"relation_name":"regulates","term_name":"bone mineralization","termid":"GO:0030282"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of bone mineralization","termid":"GO:0030500"}


id: MONDO:0016382
data:
  {"annotated_genes":["SJAG_01798","SJAG_01338"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85976],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859355"},{"annotations":[87137],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011405"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"epidermal disease","termid":"MONDO:0019268"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01338":null,"SJAG_01798":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"hereditary poikiloderma","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1842934","GARD:20545","Orphanet:222628","UMLS:C5680891"],"termid":"MONDO:0016382","terms_by_termid":{"MONDO:0011405":null,"MONDO:0859355":null},"xrefs":{"Monarch":{"xref_id":"0016382"}}}


id: GO:0016671
data:
  {"annotated_genes":["SJAG_04060","SJAG_00419","SJAG_00365"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95898],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036456"},{"annotations":[77379],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033743"},{"annotations":[60699],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008113"},{"annotations":[80290],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004604"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors","termid":"GO:0016667"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00365":null,"SJAG_00419":null,"SJAG_04060":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["EC:1.8.4.-"],"synonyms":[{"name":"oxidoreductase activity, acting on sulphur group of donors, disulphide as acceptor","type":"exact"}],"termid":"GO:0016671","terms_by_termid":{"GO:0004604":null,"GO:0008113":null,"GO:0033743":null,"GO:0036456":null}}


id: PBO:0017065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA small nucleolar RNA 12/snR99","termid":"PBO:0017065"}


id: PBO:0070323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 12","termid":"PBO:0070323"}


id: PBO:0043413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cap methyltransferase 2","termid":"PBO:0043413"}


id: PBO:0070407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication protein A2 pseudogene 1","termid":"PBO:0070407"}


id: MONDO:0010215
data:
  {"annotated_genes":["SJAG_02556"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86991],"is_not":false,"summary":null,"term":"MONDO:0010215"}]},"cv_name":"mondo","definition":"Any xeroderma pigmentosum in which the cause of the disease is a mutation in the ERCC4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xeroderma pigmentosum-Cockayne syndrome complex","termid":"MONDO:0016354"},{"relation_name":"is_a","term_name":"xeroderma pigmentosum","termid":"MONDO:0019600"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02556":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0021190"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0021190","MONDO:0005093","MONDO:0005066"],"is_obsolete":false,"name":"xeroderma pigmentosum group F","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:276264","OMIM:278760","GARD:5628","MESH:C562592","UMLS:C0268140","DOID:0110848","MEDGEN:120612","SCTID:42530008","NCIT:C3968"],"synonyms":[{"name":"ERCC4 xeroderma pigmentosum","type":"exact"},{"name":"XP group F","type":"exact"},{"name":"XP, group F","type":"exact"},{"name":"XP-F","type":"exact"},{"name":"XP6","type":"exact"},{"name":"XPF","type":"exact"},{"name":"xeroderma pigmentosum 6","type":"related"},{"name":"xeroderma pigmentosum VI","type":"exact"},{"name":"xeroderma pigmentosum caused by mutation in ERCC4","type":"exact"},{"name":"xeroderma pigmentosum group F","type":"exact"},{"name":"xeroderma pigmentosum group type F","type":"exact"},{"name":"xeroderma pigmentosum, complementation group F","type":"related"},{"name":"xeroderma pigmentosum, complementation group type F","type":"exact"},{"name":"xeroderma pigmentosum, group F","type":"exact"},{"name":"xeroderma pigmentosum, type 6","type":"related"},{"name":"xeroderma pigmentosum, type F/Cockayne syndrome","type":"related"}],"termid":"MONDO:0010215","terms_by_termid":{"MONDO:0010215":null},"xrefs":{"Monarch":{"xref_id":"0010215"}}}


id: GO:2001289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving lipid X, 2,3-diacylglucosamine 1-phosphate.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino sugar metabolic process","termid":"GO:0006040"},{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"},{"relation_name":"is_a","term_name":"organophosphate metabolic process","termid":"GO:0019637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lipid X metabolic process","synonyms":[{"name":"2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate metabolic process","type":"related"},{"name":"2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate metabolism","type":"related"},{"name":"2,3-Bis(beta-hydoroxymyristoyl)-beta-D-glucosaminyl 1-phosphate metabolic process","type":"related"},{"name":"2,3-Bis(beta-hydoroxymyristoyl)-beta-D-glucosaminyl 1-phosphate metabolism","type":"related"},{"name":"2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-alpha-D-glucopyranose metabolic process","type":"exact"},{"name":"2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-alpha-D-glucopyranose metabolism","type":"exact"},{"name":"lipid X metabolism","type":"exact"}],"termid":"GO:2001289"}


id: RO:0002481
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"molecular_interaction_relation_helper_property","termid":"RO:0002564"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_kinase_activity","termid":"RO:0002481"}


id: PBO:0049548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B clustered histone 11","termid":"PBO:0049548"}


id: PBO:0051290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1D-8","termid":"PBO:0051290"}


id: PBO:0071412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 18","termid":"PBO:0071412"}


id: PBO:0042668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule pseudogene 2","termid":"PBO:0042668"}


id: FYPO:0001678
data:
  {"alleles_by_uniquename":{"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[119455],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001132"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to chromatin is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization","termid":"FYPO:0001375"},{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin","termid":"FYPO:0001679"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01745":null,"SJAG_03892":null},"genotype_count":1,"genotypes_by_uniquename":{"nur1delta__vps4delta":{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01050","SJAG_03892"],"name":"abolished protein localization to chromatin","references_by_uniquename":{"PMID:32109380":null},"synonyms":[{"name":"abolished protein localisation to chromatin","type":"exact"},{"name":"protein localization to chromatin abolished","type":"exact"}],"termid":"FYPO:0001678","terms_by_termid":{"FYPO:0001132":null,"FYPO_EXT:0000001":null}}


id: FYPO:0007170
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype an ascus contains four nuclei, as in wild type.","definition_xrefs":["PomBase:mah","PMID:20826461"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257"],"is_obsolete":false,"name":"normal number of nuclei in ascus","termid":"FYPO:0007170"}


id: PBO:0076744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell leukemia translocation altered","termid":"PBO:0076744"}


id: MONDO:0017976
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete disorder of sex development of gynecological interest (obsolete MONDO:0017976)","secondary_identifiers":["Orphanet:325620"],"synonyms":[{"name":"DSD of gynecological interest","type":"exact"}],"termid":"MONDO:0017976","xrefs":{"Monarch":{"xref_id":"0017976"}}}


id: GO:0010188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a microbial phytotoxin stimulus. A microbial phytotoxin is a chemical substance produced by microbes which is toxic to plants.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to toxic substance","termid":"GO:0009636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to microbial phytotoxin","termid":"GO:0010188"}


id: PBO:0046089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A2","termid":"PBO:0046089"}


id: PBO:0001156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Tyrosine","termid":"PBO:0001156"}


id: PBO:0045308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA methyltransferase 3A pseudogene 1","termid":"PBO:0045308"}


id: MONDO:0023079
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epidermal nevus vitamin D resistant rickets","termid":"MONDO:0023079","xrefs":{"Monarch":{"xref_id":"0023079"}}}


id: GO:0048908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a neuron of the anterior lateral line ganglion.","definition_xrefs":["PMID:15018940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral line ganglion neuron differentiation","termid":"GO:0048891"},{"relation_name":"part_of","term_name":"anterior lateral line ganglion development","termid":"GO:0048907"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior lateral line ganglion neuron differentiation","termid":"GO:0048908"}


id: GO:0001967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Specific behavior of a newborn or infant mammal that results in the derivation of nourishment from the breast.","definition_xrefs":["GOC:pr","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feeding behavior","termid":"GO:0007631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"suckling behavior","synonyms":[{"name":"nursing behavior","type":"exact"}],"termid":"GO:0001967"}


id: GO:0030963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The dihydroxylation of peptidyl-lysine to peptidyl-4,5-dihydroxy-L-lysine.","definition_xrefs":["PMID:10978343","RESID:AA0370"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-lysine dihydroxylation to 4,5-dihydroxy-L-lysine (obsolete GO:0030963)","termid":"GO:0030963"}


id: PBO:0034819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear export factor Sac32 (predicted)","termid":"PBO:0034819"}


id: GO:0045485
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the introduction of an omega-6 double bond into the fatty acid hydrocarbon chain.","definition_xrefs":["PMID:7846158"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"omega-6 fatty acid desaturase activity","secondary_identifiers":["Reactome:R-HSA-2046092","Reactome:R-HSA-2046089"],"termid":"GO:0045485"}


id: MONDO:0016880
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal deletion","termid":"MONDO:0000761"},{"relation_name":"is_a","term_name":"chromosome 18 disorder","termid":"MONDO:0700125"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of chromosome 18","secondary_identifiers":["MEDGEN:1826018","Orphanet:261836","UMLS:C5679660","GARD:20803"],"synonyms":[{"name":"partial deletion of chromosome type 18","type":"exact"},{"name":"partial monosomy of chromosome 18","type":"exact"}],"termid":"MONDO:0016880","xrefs":{"Monarch":{"xref_id":"0016880"}}}


id: PBO:0044514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CXXC motif containing zinc binding protein","termid":"PBO:0044514"}


id: PBO:0075166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein D2 polypeptide","termid":"PBO:0075166"}


id: FYPO:0003913
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which minichromosomes are lost at a lower frequency than normal during the vegetative growth phase of the life cycle. Minichromosome loss occurs when one or both daughter cells do not inherit copies of a minichromosome from the mother cell, and may result from failure of minichromosome replication or segregation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased minichromosome loss during vegetative growth","synonyms":[{"name":"decreased minichromosome loss during mitotic cell cycle","type":"related"},{"name":"reduced minichromosome loss during vegetative growth","type":"exact"}],"termid":"FYPO:0003913"}


id: PATO:0000031
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000031 metabolite composition (obsolete PATO:0000031)","termid":"PATO:0000031"}


id: PBO:0006213
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allele","termid":"PBO:0006213"}


id: PBO:0059526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded 12S rRNA","termid":"PBO:0059526"}


id: PBO:0026817
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_transcription_during_nitrogen_starvation","termid":"PBO:0026817"}


id: PBO:0077313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 51","termid":"PBO:0077313"}


id: PBO:0003744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit VII Cox7 (predicted)","termid":"PBO:0003744"}


id: PBO:0085250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peripheral ER membrane protein; putative ER chaperone required for the stability and function of nutrient permeases exposed to high pressure","termid":"PBO:0085250"}


id: PBO:0038587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetyl-CoA carboxylase alpha","termid":"PBO:0038587"}


id: PBO:0033819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Srp2","termid":"PBO:0033819"}


id: GO:0031124
data:
  {"annotated_genes":["SJAG_02720","SJAG_00435","SJAG_02668","SJAG_02037","SJAG_03233","SJAG_00527","SJAG_03126","SJAG_03226","SJAG_04427","SJAG_04587","SJAG_04022","SJAG_02551","SJAG_03853","SJAG_00961","SJAG_03500","SJAG_01175","SJAG_01791","SJAG_03594","SJAG_01412","SJAG_04942","SJAG_03624","SJAG_02865","SJAG_01599","SJAG_00448"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65301,98835],"is_not":false,"summary":null,"term":"GO:0031124"},{"annotations":[93808,111881,67903,118523,98463,88729,100623,93786,105312,113879,105022,93274,90962,93165,99416,105060,111608,97513,112268,87978,115598,110127],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180010"}]},"cv_name":"biological_process","definition":"Any process involved in forming the mature 3' end of an mRNA molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA processing","termid":"GO:0006397"},{"relation_name":"is_a","term_name":"RNA 3'-end processing","termid":"GO:0031123"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00435":null,"SJAG_00448":null,"SJAG_00527":null,"SJAG_00961":null,"SJAG_01175":null,"SJAG_01412":null,"SJAG_01599":null,"SJAG_01791":null,"SJAG_02037":null,"SJAG_02551":null,"SJAG_02668":null,"SJAG_02720":null,"SJAG_02865":null,"SJAG_03126":null,"SJAG_03226":null,"SJAG_03233":null,"SJAG_03500":null,"SJAG_03594":null,"SJAG_03624":null,"SJAG_03853":null,"SJAG_04022":null,"SJAG_04427":null,"SJAG_04587":null,"SJAG_04942":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016071","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"mRNA 3'-end processing","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-75067","Reactome:R-HSA-72187"],"synonyms":[{"name":"mRNA 3' end processing","type":"exact"}],"termid":"GO:0031124","terms_by_termid":{"GO:0031124":null,"GO:0180010":null}}


id: MONDO:0007197
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"urinary bladder disorder","termid":"MONDO:0006026"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bladder diverticulum","secondary_identifiers":["NCIT:C160155","SCTID:197866008","MEDGEN:57625","HP:0000015","ICD10CM:N32.3","MESH:C562406","ICD9:596.3","DOID:11353","UMLS:C0156273","OMIM:109820"],"synonyms":[{"name":"bladder diverticulum","type":"exact"},{"name":"bladder diverticulum (disease)","type":"exact"},{"name":"diverticulum - bladder","type":"exact"},{"name":"diverticulum of bladder","type":"exact"}],"termid":"MONDO:0007197","xrefs":{"Monarch":{"xref_id":"0007197"}}}


id: PBO:0070043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1340, pseudogene","termid":"PBO:0070043"}


id: PBO:0058149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4444-2","termid":"PBO:0058149"}


id: PBO:0004233
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypercalciuric nephrolithiasis","termid":"PBO:0004233"}


id: PBO:0050681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 8 pseudogene 8","termid":"PBO:0050681"}


id: PBO:0078104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking protein particle complex subunit 12","termid":"PBO:0078104"}


id: GO:0060407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate, frequency or extent of penile erection. Penile erection is the hardening, enlarging and rising of the penis which often occurs in the sexually aroused male and enables sexual intercourse. Achieved by increased inflow of blood into the vessels of erectile tissue, and decreased outflow.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of penile erection","termid":"GO:0060405"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"penile erection","termid":"GO:0043084"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of penile erection","termid":"GO:0060407"}


id: PR:000028943
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peptide methionine sulfoxide reductase reduced form in Schizosaccharomyces pombe.","definition_xrefs":["PMID:22245228","PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSRA/Red+","pombase_gene_id":"SPAC29E6.05c","synonyms":[{"name":"MSRA/Red+","type":"exact"},{"name":"PomBase_original_PRO_term_name: peptide methionine sulfoxide reductase reduced form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-MSRA/Red+","type":"exact"}],"termid":"PR:000028943"}


id: PBO:0044475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYP17A1 antisense RNA 1","termid":"PBO:0044475"}


id: RO:HOM0000052
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Peramorphosis that is produced by a delay in the offset of development.","definition_xrefs":["ISBN:978-0674639416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in_peramorphosis_relationship_with","termid":"RO:HOM0000030"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_hypermorphosis_relationship_with","termid":"RO:HOM0000052"}


id: GO:0141075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which a symbiont interferes with, inhibits or disrupt a JAK-STAT signal cascade in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:27437422","PMID:22919663","PMID:29924996","PMID:20624917","PMID:31413201"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression of host JAK-STAT cascade (obsolete GO:0141075)","synonyms":[{"name":"disruption of host JAK-STAT cascade","type":"exact"},{"name":"down-regulation of host JAK-STAT cascade","type":"exact"},{"name":"downregulation of host JAK-STAT cascade","type":"exact"},{"name":"inhibition of host JAK-STAT cascade","type":"narrow"},{"name":"negative regulation of host JAK-STAT cascade","type":"exact"},{"name":"suppression of host JAK-STAT cascade","type":"exact"},{"name":"symbiont-mediated suppression of host JAK-STAT cascade","type":"related"}],"termid":"GO:0141075"}


id: GO:0031633
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A chromatophore containing yellow pigment.","definition_xrefs":["ISBN:0395825172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane-derived chromatophore","termid":"GO:0042716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"xanthophore","termid":"GO:0031633"}


id: GO:0072211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric pyramids over time, from their formation to the mature structures. Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyramid development","termid":"GO:0072056"},{"relation_name":"part_of","term_name":"metanephros development","termid":"GO:0001656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric pyramids development","synonyms":[{"name":"metanephric kidney pyramid development","type":"exact"},{"name":"metanephric pyramid development","type":"exact"},{"name":"metanephric renal medulla development","type":"exact"},{"name":"metanephric renal pyramid development","type":"exact"}],"termid":"GO:0072211"}


id: PBO:0060550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAD(P)HX epimerase","termid":"PBO:0060550"}


id: GO:0016993
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: precorrin-8X = hydrogenobyrinate.","definition_xrefs":["EC:5.4.99.61"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular acyltransferase activity","termid":"GO:0016867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"precorrin-8X methylmutase activity","secondary_identifiers":["RHEA:22512","MetaCyc:5.4.1.2-RXN"],"synonyms":[{"name":"HBA synthase activity","type":"related"},{"name":"hydrogenobyrinic acid-binding protein activity","type":"narrow"},{"name":"precorrin isomerase activity","type":"related"},{"name":"precorrin-8X 11,12-methylmutase activity","type":"exact"}],"termid":"GO:0016993"}


id: PBO:0004586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sir2 family histone deacetylase Sir2","termid":"PBO:0004586"}


id: PBO:0045709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double zinc ribbon and ankyrin repeat domains 1","termid":"PBO:0045709"}


id: PATO:0000869
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000869 prepulse inhibition value (obsolete PATO:0000869)","termid":"PATO:0000869"}


id: MONDO:0008585
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A life-threatening condition that can potentially complicate pregnancy. It is named for 3 features of the condition: H emolysis, E levated L iver enzyme levels, and L ow P latelet levels. It typically occurs in the last 3 months of pregnancy (the third trimester) but can also start soon after delivery. A wide range of non-specific symptoms may be present in women with HELLP syndrome. Symptoms may include fatigue; malaise; fluid retention and excess weight gain; headache; nausea and vomiting; pain in the upper right or middle of the abdomen; blurry vision; and rarely, nosebleed or seizures. The cause of HELLP syndrome is not known, but certain risk factors have been associated with the condition. It is most common in women with preeclampsia or eclampsia. If not diagnosed and treated quickly, HELLP syndrome can lead to serious complications for the mother and baby.The main treatment is to deliver the baby as soon as possible, even if premature. Treatment may also include medications needed for the mother or baby, and blood transfusion for severe bleeding problems.","direct_ancestors":[{"relation_name":"is_a","term_name":"severe pre-eclampsia","termid":"MONDO:0001641"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HELLP syndrome","secondary_identifiers":["DOID:13133","EFO:0007297","MEDGEN:58162","icd11.foundation:1748922908","GARD:8528","MESH:D017359","UMLS:C0162739","MedDRA:10049058","NCIT:C84750","Orphanet:244242"],"synonyms":[{"name":"PEE1","type":"related"},{"name":"PREECLAMPSIA/eclampsia 1","type":"related"},{"name":"PREG1","type":"related"},{"name":"hemolysis, elevated liver enzymes, and low platelet count","type":"related"},{"name":"hemolysis, elevated liver enzymes, low platelets in pregnancy","type":"exact"},{"name":"hemolysis, elevated liver enzymes, lowered platelets","type":"related"},{"name":"hemolysis-elevated liver enzymes-low platelet count syndrome","type":"exact"},{"name":"hemolysis-elevated liver enzymes-low platelets syndrome","type":"exact"},{"name":"hypertension, pregnancy-induced","type":"related"},{"name":"toxaemia of pregnancy","type":"related"},{"name":"toxemia of pregnancy","type":"related"}],"termid":"MONDO:0008585","xrefs":{"Monarch":{"xref_id":"0008585"}}}


id: PBO:0038574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABRA C-terminal like","termid":"PBO:0038574"}


id: PBO:0083117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication initiation protein; loads DNA pol epsilon onto pre-replication complexes at origins; checkpoint sensor recruited to stalled replication forks by the checkpoint clamp complex where it activates Mec1p; along with Rfa1p, binds to ultrafine anaphase bridges in mitotic cells and prevents accumulation of chromatin bridges by stimulating the Mec1p kinase and suppressing homologous recombination; ortholog of human TopBP1; forms nuclear foci upon DNA replication stress","termid":"PBO:0083117"}


id: MONDO:0007233
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital defect in the neck that occurs during early embryonic development. It is caused by developmental abnormalities of the pharyngeal arches and results in the development of a cyst or a fissure in the side of the neck.","definition_xrefs":["NCIT:C104813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysts and fistulae of the face and oral cavity","termid":"MONDO:0015476"},{"relation_name":"is_a","term_name":"hereditary otorhinolaryngologic disease","termid":"MONDO:0018751"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"second branchial cleft anomaly","secondary_identifiers":["OMIM:113600","Orphanet:141022","UMLS:C3874315","GARD:16968","SCTID:73381000119100","MEDGEN:840602"],"synonyms":[{"name":"branchial cleft","type":"exact"},{"name":"branchial cleft anomalies","type":"related"},{"name":"branchial cleft remnant","type":"exact"},{"name":"branchial cysts","type":"related"},{"name":"second branchial cleft cyst","type":"exact"},{"name":"second branchial cleft fistula","type":"exact"}],"termid":"MONDO:0007233","xrefs":{"Monarch":{"xref_id":"0007233"}}}


id: GO:0043799
data:
  {"annotated_genes":["SJAG_02496"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[115055],"is_not":false,"summary":null,"term":"GO:0043799"}]},"cv_name":"molecular_function","definition":"Catalysis of the reactions: (1) glycine + H2O + O2 = glyoxylate + NH3 + hydrogen peroxide; (2) D-alanine + H2O + O2 = pyruvate + NH3 + hydrogen peroxide; (3) sarcosine + H2O + O2 = glyoxylate + methylamine + hydrogen peroxide; (4) N-ethylglycine + H2O + O2 = glyoxylate + ethylamine + hydrogen peroxide.","definition_xrefs":["EC:1.4.3.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aliphatic amine oxidase activity","termid":"GO:0052595"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02496":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"glycine oxidase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glycine:oxygen oxidoreductase (deaminating)","type":"exact"}],"termid":"GO:0043799","terms_by_termid":{"GO:0043799":null}}


id: GO:0090188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of pancreatic juice secretion, the regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of secretion","termid":"GO:0051048"},{"relation_name":"is_a","term_name":"negative regulation of digestive system process","termid":"GO:0060457"},{"relation_name":"is_a","term_name":"regulation of pancreatic juice secretion","termid":"GO:0090186"},{"relation_name":"negatively_regulates","term_name":"pancreatic juice secretion","termid":"GO:0030157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of pancreatic juice secretion","termid":"GO:0090188"}


id: GO:0046924
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The cross-linking of a cysteine residue to an L-phenylalanine residue to form 2-(S-L-cysteinyl)-L-phenylalanine.","definition_xrefs":["PMID:12696888","RESID:AA0340"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via 2-(S-L-cysteinyl)-L-phenylalanine (obsolete GO:0046924)","termid":"GO:0046924"}


id: PBO:0073247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 1","termid":"PBO:0073247"}


id: PBO:0051565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 12 receptor subunit beta 2","termid":"PBO:0051565"}


id: PBO:0050122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 32","termid":"PBO:0050122"}


id: MONDO:0021507
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that involves the brainstem.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brainstem neoplasm","termid":"MONDO:0021228"},{"relation_name":"is_a","term_name":"benign neoplasm of brain","termid":"MONDO:0021451"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign neoplasm of brain stem","secondary_identifiers":["NCIT:C8549","SCTID:92029009","UMLS:C0686400","MEDGEN:146353"],"synonyms":[{"name":"benign brain stem neoplasm","type":"exact"},{"name":"benign brain stem neoplasms","type":"exact"},{"name":"benign brain stem tumor","type":"exact"},{"name":"benign brain stem tumour","type":"exact"},{"name":"benign brainstem neoplasm","type":"exact"},{"name":"benign brainstem neoplasms","type":"exact"},{"name":"benign brainstem tumor","type":"exact"},{"name":"benign brainstem tumors","type":"exact"},{"name":"benign brainstem tumour","type":"exact"},{"name":"benign brainstem tumours","type":"exact"},{"name":"benign neoplasm of brainstem","type":"exact"},{"name":"benign neoplasm of the brain stem","type":"exact"},{"name":"benign neoplasm of the brainstem","type":"exact"},{"name":"benign neoplasms of brainstem","type":"exact"},{"name":"benign neoplasms of the brainstem","type":"exact"},{"name":"benign tumor of brain stem","type":"exact"},{"name":"benign tumor of brainstem","type":"exact"},{"name":"benign tumor of the brain stem","type":"exact"},{"name":"benign tumor of the brainstem","type":"exact"},{"name":"benign tumors of brainstem","type":"exact"},{"name":"benign tumors of the brainstem","type":"exact"},{"name":"benign tumour of brain stem","type":"exact"},{"name":"benign tumour of brainstem","type":"exact"},{"name":"benign tumour of the brain stem","type":"exact"},{"name":"benign tumour of the brainstem","type":"exact"},{"name":"benign tumours of brainstem","type":"exact"},{"name":"benign tumours of the brainstem","type":"exact"},{"name":"brainstem benign neoplasm","type":"exact"}],"termid":"MONDO:0021507","xrefs":{"Monarch":{"xref_id":"0021507"}}}


id: PBO:0075722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorcin pseudogene 3","termid":"PBO:0075722"}


id: GO:0006790
data:
  {"annotated_genes":["SJAG_00988","SJAG_02741","SJAG_04042","SJAG_04499","SJAG_04895","SJAG_01612","SJAG_03671","SJAG_03813","SJAG_03556","SJAG_00827","SJAG_00234","SJAG_03141","SJAG_01693","SJAG_01402","SJAG_01192","SJAG_01474","SJAG_01524","SJAG_02247","SJAG_01989","SJAG_04305","SJAG_03731","SJAG_01139","SJAG_00832","SJAG_00673","SJAG_00903","SJAG_04459","SJAG_02689","SJAG_01466","SJAG_03712","SJAG_04425","SJAG_03349","SJAG_03659","SJAG_00427","SJAG_02972","SJAG_02380","SJAG_04007","SJAG_02158","SJAG_01271","SJAG_01702","SJAG_03553","SJAG_04060","SJAG_02421","SJAG_04067","SJAG_03881","SJAG_04865","SJAG_05277","SJAG_02406","SJAG_03064","SJAG_01742","SJAG_02293","SJAG_03310","SJAG_00881","SJAG_00902","SJAG_01404","SJAG_03152","SJAG_01162","SJAG_00866","SJAG_00982","SJAG_03475","SJAG_00582","SJAG_02420","SJAG_00381","SJAG_00947","SJAG_01935","SJAG_05181","SJAG_03715","SJAG_03856","SJAG_00395","SJAG_03362","SJAG_04627","SJAG_02599","SJAG_04858","SJAG_04726","SJAG_03471","SJAG_03313","SJAG_02047","SJAG_04282","SJAG_00084","SJAG_02769","SJAG_03909","SJAG_04953","SJAG_01970","SJAG_02006","SJAG_05027","SJAG_01995","SJAG_03316","SJAG_04288","SJAG_01880","SJAG_03198","SJAG_01187","SJAG_03538","SJAG_01351","SJAG_03614","SJAG_03290","SJAG_01786","SJAG_00309","SJAG_04866","SJAG_02290","SJAG_03494","SJAG_03102"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65594,68743,106315,111402],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071266"},{"annotations":[93601,98702],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006085"},{"annotations":[91777,68857],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019427"},{"annotations":[117349],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990181"},{"annotations":[114650,80304,116063],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006084"},{"annotations":[109026,97148],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006637"},{"annotations":[79703,76721],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009102"},{"annotations":[80309,89716,71964,71482,78942],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015937"},{"annotations":[78403],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015938"},{"annotations":[59303],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015936"},{"annotations":[77865,73035,76507],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006535"},{"annotations":[110818],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019343"},{"annotations":[118481,103912,98849,93652],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006534"},{"annotations":[111846,103942],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052699"},{"annotations":[57777,108749,79134,77683],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006750"},{"annotations":[74021,102579,78924,76986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006751"},{"annotations":[77483,79429,103110,99598],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006749"},{"annotations":[79404,74905],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050667"},{"annotations":[80508,77478,74689,115207],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019287"},{"annotations":[110819],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071269"},{"annotations":[79585,80462,58761,77265,78222,78673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019509"},{"annotations":[97494,75492,98191],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009107"},{"annotations":[107789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035338"},{"annotations":[77619,79201],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035336"},{"annotations":[66263],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001295"},{"annotations":[74902,112279,64262,72229,79401,71412,64640,76756],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009086"},{"annotations":[103707,110979,113013],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006555"},{"annotations":[115782,111680],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:2001211"},{"annotations":[113990,89378],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0090180"},{"annotations":[73116,73748,87770,74984,79417,88199],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006086"},{"annotations":[75468],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0010510"},{"annotations":[75505],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006556"},{"annotations":[77851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033353"},{"annotations":[76754],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033528"},{"annotations":[90256,72109],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006104"},{"annotations":[58875,88110,75342,66981,117779,98126,79325],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000103"},{"annotations":[80289,100327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019379"},{"annotations":[70518,74373,74294,77507,61723,78777],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009228"},{"annotations":[113896,113902,78584,66000,116323,67674],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009229"},{"annotations":[66343,59043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006772"},{"annotations":[110759,99852,110760],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036172"},{"annotations":[74107],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052837"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic 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metabolism","type":"exact"}],"termid":"GO:0006790","terms_by_termid":{"GO:0000103":null,"GO:0006084":null,"GO:0006085":null,"GO:0006086":null,"GO:0006104":null,"GO:0006534":null,"GO:0006535":null,"GO:0006555":null,"GO:0006556":null,"GO:0006637":null,"GO:0006749":null,"GO:0006750":null,"GO:0006751":null,"GO:0006772":null,"GO:0009086":null,"GO:0009102":null,"GO:0009107":null,"GO:0009228":null,"GO:0009229":null,"GO:0010510":null,"GO:0015936":null,"GO:0015937":null,"GO:0015938":null,"GO:0019287":null,"GO:0019343":null,"GO:0019379":null,"GO:0019427":null,"GO:0019509":null,"GO:0033353":null,"GO:0033528":null,"GO:0035336":null,"GO:0035338":null,"GO:0036172":null,"GO:0050667":null,"GO:0052699":null,"GO:0052837":null,"GO:0071266":null,"GO:0071269":null,"GO:0090180":null,"GO:1990181":null,"GO:2001211":null,"GO:2001295":null}}


id: FYPO:0001274
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to hypoxia is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"},{"relation_name":"is_a","term_name":"altered protein level during cellular response to hypoxia","termid":"FYPO:0001549"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein level during cellular response to hypoxia","synonyms":[{"name":"decreased protein accumulation during cellular response to hypoxia","type":"related"},{"name":"decreased protein level during cellular response to hypoxia during mitotic cell cycle","type":"related"},{"name":"decreased protein level during cellular response to hypoxia during vegetative growth","type":"exact"},{"name":"decreased protein level during cellular response to hypoxic stress","type":"exact"},{"name":"decreased protein level during cellular response to lowered oxygen tension","type":"exact"},{"name":"reduced protein level during cellular response to hypoxia","type":"exact"}],"termid":"FYPO:0001274"}


id: GO:0010938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of tubulin heterodimers from one or both ends of a cytoplasmic microtubule.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule depolymerization","termid":"GO:0007019"},{"relation_name":"is_a","term_name":"cytoplasmic microtubule organization","termid":"GO:0031122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0000226","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"cytoplasmic microtubule depolymerization","termid":"GO:0010938"}


id: PBO:0080057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP27X divergent transcript","termid":"PBO:0080057"}


id: MONDO:0005407
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An eosinophilic esophagitis that starts in childhood.","definition_xrefs":["EFO:0004594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eosinophilic esophagitis","termid":"MONDO:0005361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"childhood eosinophilic esophagitis","synonyms":[{"name":"eosinophilic esophagitis of childhood","type":"exact"},{"name":"paediatric eosinophilic esophagitis","type":"exact"},{"name":"pediatric eosinophilic esophagitis","type":"exact"}],"termid":"MONDO:0005407","xrefs":{"Monarch":{"xref_id":"0005407"}}}


id: MONDO:0015131
data:
  {"annotated_genes":["SJAG_04199","SJAG_01732","SJAG_03333","SJAG_02038","SJAG_00677","SJAG_03720","SJAG_02527","SJAG_05024","SJAG_00874"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85760],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008840"},{"annotations":[87141],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012650"},{"annotations":[85442],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044725"},{"annotations":[87421],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011686"},{"annotations":[86003],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009973"},{"annotations":[86254],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014168"},{"annotations":[86805],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014391"},{"annotations":[86274],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010518"},{"annotations":[87240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010455"}]},"cv_name":"mondo","definition":"A broad classification of inherited disorders presenting at birth that affect both the cell-mediated and humoral aspects of the immune response. Circulating numbers of B lymphocytes, T lymphocytes and NK cells are variable but where present do not function properly. Susceptibility to infection is the primary concern.","definition_xrefs":["NCIT:C27871"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00677":null,"SJAG_00874":null,"SJAG_01732":null,"SJAG_02038":null,"SJAG_02527":null,"SJAG_03333":null,"SJAG_03720":null,"SJAG_04199":null,"SJAG_05024":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"combined immunodeficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2100203","icd11.foundation:1616506198","DOID:0111962","ICD9:279.2","Orphanet:101972","UMLS:C2711630","GARD:19806","DOID:628","MEDGEN:751396"],"synonyms":[{"name":"CID","type":"exact"},{"name":"X-linked combined immunodeficiency","type":"narrow"},{"name":"combined T and B cell immunodeficiency","type":"related"},{"name":"combined T cell and B cell immunodeficiency","type":"related"},{"name":"combined immunodeficiency","type":"exact"},{"name":"congenital combined immunodeficiency","type":"exact"}],"termid":"MONDO:0015131","terms_by_termid":{"MONDO:0008840":null,"MONDO:0009973":null,"MONDO:0010455":null,"MONDO:0010518":null,"MONDO:0011686":null,"MONDO:0012650":null,"MONDO:0014168":null,"MONDO:0014391":null,"MONDO:0044725":null},"xrefs":{"Monarch":{"xref_id":"0015131"}}}


id: PBO:0076129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUB1 regulator of transcription","termid":"PBO:0076129"}


id: PBO:0047194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 210 member B","termid":"PBO:0047194"}


id: GO:0070434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of the nucleotide-binding oligomerization domain containing 2 (NOD2) pathway.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway","termid":"GO:0070426"},{"relation_name":"is_a","term_name":"regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway","termid":"GO:0070432"},{"relation_name":"positively_regulates","term_name":"nucleotide-binding oligomerization domain containing 2 signaling pathway","termid":"GO:0070431"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway","synonyms":[{"name":"positive regulation of NOD2 signaling pathway","type":"exact"},{"name":"positive regulation of nucleotide-binding oligomerization domain containing 2 signalling pathway","type":"exact"}],"termid":"GO:0070434"}


id: GO:0070184
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling tyrosine to tyrosyl-tRNA in a mitochondrion, catalyzed by tyrosyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:mcc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosyl-tRNA aminoacylation","termid":"GO:0006437"},{"relation_name":"is_a","term_name":"tRNA aminoacylation for mitochondrial protein translation","termid":"GO:0070127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0140053","GO:0006520","GO:0006399"],"is_obsolete":false,"name":"mitochondrial tyrosyl-tRNA aminoacylation","termid":"GO:0070184"}


id: FYPO:0003150
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the switch from the monopolar to bipolar mode of cell growth (new end take-off; NETO) occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal NETO","termid":"FYPO:0000147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0005568"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0005568","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased NETO","synonyms":[{"name":"decreased NETO during mitotic cell cycle","type":"related"},{"name":"decreased NETO during vegetative growth","type":"exact"},{"name":"decreased activation of bipolar cell growth","type":"related"},{"name":"decreased cell growth mode switching, monopolar to bipolar","type":"exact"},{"name":"decreased new end take-off","type":"exact"},{"name":"decreased switch from monopolar to bipolar cell growth","type":"exact"},{"name":"reduced NETO","type":"exact"}],"termid":"FYPO:0003150"}


id: PBO:0038723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 18","termid":"PBO:0038723"}


id: SO:0002270
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"RTE retrotransposons are LINE elements (SO:0000194) that contain a domain with homology to the apurinic-apyrimidic (AP) endonucleases in addition to the previously identified reverse transcriptase domain.","definition_xrefs":["PMID:9729877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"LINE_element","termid":"SO:0000194"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RTE_LINE_retrotransposon","synonyms":[{"name":"RIT retrotransposon","type":"exact"},{"name":"RTE LINE retrotransposon","type":"exact"},{"name":"RTE retrotransposon","type":"exact"}],"termid":"SO:0002270"}


id: MONDO:0017272
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal ichthyosis syndrome with prominent neurologics signs (obsolete MONDO:0017272)","secondary_identifiers":["Orphanet:281238"],"synonyms":[{"name":"autosomal ichthyosis syndrome with prominent neurologic signs","type":"related"}],"termid":"MONDO:0017272","xrefs":{"Monarch":{"xref_id":"0017272"}}}


id: GO:0035126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring after embryonic development, by which the anatomical structures of the genitalia are generated and organized.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genitalia morphogenesis","termid":"GO:0035112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic genitalia morphogenesis","synonyms":[{"name":"post-embryonic genital morphogenesis","type":"related"}],"termid":"GO:0035126"}


id: PBO:0003984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Prp43 (predicted)","termid":"PBO:0003984"}


id: GO:0017188
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-aspartate + acetyl-CoA = N-acetyl-L-aspartate + CoA + H+.","definition_xrefs":["RHEA:14165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-amino-acid N-acetyltransferase activity","termid":"GO:0140085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016746","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"L-aspartate N-acetyltransferase activity","secondary_identifiers":["KEGG_REACTION:R00487","EC:2.3.1.17","MetaCyc:ASPARTATE-N-ACETYLTRANSFERASE-RXN","Reactome:R-HSA-8954468"],"synonyms":[{"name":"acetyl-CoA:L-aspartate N-acetyltransferase activity","type":"exact"},{"name":"aspartate N-acetyltransferase activity","type":"exact"}],"termid":"GO:0017188"}


id: GO:0097175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 1,6-anhydro-N-acetylmuramic acid, the 1,6-anhydro-derivative of N-acetyl-beta-muramic acid.","definition_xrefs":["PMID:15901686","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"1,6-anhydro-N-acetyl-beta-muramic acid metabolic process","termid":"GO:0097174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0044248"],"is_obsolete":false,"name":"1,6-anhydro-N-acetyl-beta-muramic acid catabolic process","synonyms":[{"name":"1,6-anhydro-N-acetyl-beta-muramate breakdown","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramate catabolic process","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramate catabolism","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramate degradation","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramic acid breakdown","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramic acid catabolism","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramic acid degradation","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramate breakdown","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramate catabolic process","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramate catabolism","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramate degradation","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramic acid breakdown","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramic acid catabolic process","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramic acid catabolism","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramic acid degradation","type":"exact"}],"termid":"GO:0097175"}


id: PBO:0012863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Csl4","termid":"PBO:0012863"}


id: MONDO:0015042
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"plasmacytoma","termid":"MONDO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"primary plasmacytoma of the bone","secondary_identifiers":["GARD:19739","Orphanet:100021"],"termid":"MONDO:0015042","xrefs":{"Monarch":{"xref_id":"0015042"}}}


id: PR:O14460
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An elongation factor 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR23115:SF4","PRO:DNx","OMA:SCHPO04354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongation factor 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC513.01c","secondary_identifiers":["UniProtKB:O14460"],"synonyms":[{"name":"EF-2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-EEF2","type":"exact"}],"termid":"PR:O14460"}


id: GO:0010161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated upon sensing of red light by a photoreceptor molecule. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.","definition_xrefs":["GOC:mtg_far_red","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"red or far-red light signaling pathway","termid":"GO:0010017"},{"relation_name":"is_a","term_name":"cellular response to red light","termid":"GO:0071491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"red light signaling pathway","synonyms":[{"name":"red light phototransduction","type":"exact"},{"name":"red light signal transduction","type":"exact"},{"name":"red light signalling pathway","type":"exact"}],"termid":"GO:0010161"}


id: GO:0001518
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A sodium channel in a cell membrane whose opening is governed by the membrane potential.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium channel complex","termid":"GO:0034706"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"voltage-gated sodium channel complex","secondary_identifiers":["NIF_Subcellular:sao785001660"],"synonyms":[{"name":"voltage gated sodium channel complex","type":"exact"},{"name":"voltage-dependent sodium channel complex","type":"exact"},{"name":"voltage-sensitive sodium channel complex","type":"exact"}],"termid":"GO:0001518"}


id: GO:0023003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Migration of one of the four nuclei at each pole of the eight-nucleate embryo sac, to the center of the cell.","definition_xrefs":["ISBN:047186840X","GOC:mtg_plant","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryo sac nuclear migration","termid":"GO:0009562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"nuclear migration to the embryo sac center","synonyms":[{"name":"nuclear migration to the embryo sac centre","type":"exact"},{"name":"nuclear migration to the female gametophyte center","type":"exact"},{"name":"nuclear migration to the female gametophyte centre","type":"exact"},{"name":"nuclear migration to the megagametophyte center","type":"exact"},{"name":"nuclear migration to the megagametophyte centre","type":"exact"},{"name":"nucleus migration to the female gametophyte center","type":"exact"},{"name":"nucleus migration to the female gametophyte centre","type":"exact"}],"termid":"GO:0023003"}


id: GO:0031972
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the inner and outer lipid bilayers of a chloroplast envelope.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid intermembrane space","termid":"GO:0009529"},{"relation_name":"part_of","term_name":"chloroplast envelope","termid":"GO:0009941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"chloroplast intermembrane space","synonyms":[{"name":"chloroplast envelope lumen","type":"exact"}],"termid":"GO:0031972"}


id: PBO:0004475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ATP-dependent DNA helicase Irc3 (predicted)","termid":"PBO:0004475"}


id: GO:0110029
data:
  {"annotated_genes":["SJAG_04259","SJAG_01082","SJAG_01330","SJAG_03327"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114800,106637],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905318"},{"annotations":[114092],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[101659],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of meiosis I, a cell cycle process comprising the steps by which a cell progresses through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of meiotic nuclear division","termid":"GO:0045835"},{"relation_name":"is_a","term_name":"regulation of meiosis I","termid":"GO:0060631"},{"relation_name":"negatively_regulates","term_name":"meiosis I","termid":"GO:0007127"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01082":null,"SJAG_01330":null,"SJAG_03327":null,"SJAG_04259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0140013"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0140013"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0140013"],"is_obsolete":false,"name":"negative regulation of meiosis I","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0110029","terms_by_termid":{"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: GO:0097587
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimer involved in the recognition of base-base and small insertion/deletion mismatches. In S. cerevisiae the complex consists of two subunits, Mlh1 and Mlh3.","definition_xrefs":["GOC:jd","PMID:10570173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch repair complex","termid":"GO:0032300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"MutLgamma complex","termid":"GO:0097587"}


id: FYPO:0006584
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the plasma membrane at the tip of a shmoo, or mating projection, is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to shmoo tip","termid":"FYPO:0004802"},{"relation_name":"is_a","term_name":"abnormal protein localization to plasma membrane","termid":"FYPO:0004838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization to shmoo tip membrane","synonyms":[{"name":"abnormal protein localisation to shmoo tip membrane","type":"exact"},{"name":"abnormal protein localization to mating projection tip membrane","type":"exact"},{"name":"abnormal protein localization to plasma membrane at shmoo tip","type":"exact"},{"name":"abnormal protein localization to shmoo membrane fusion domain","type":"exact"},{"name":"abnormal protein localization to shmoo projection membrane","type":"related"}],"termid":"FYPO:0006584"}


id: FYPO:0001075
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing papulacandin B.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000257"],"is_obsolete":false,"name":"normal growth on papulacandin B","synonyms":[{"name":"normal cell population growth in presence of papulacandin B","type":"exact"},{"name":"normal cell population growth on papulacandin B","type":"exact"},{"name":"normal cellular response to papulacandin B","type":"related"},{"name":"normal vegetative cell population growth on papulacandin B","type":"exact"}],"termid":"FYPO:0001075"}


id: PBO:0072172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15 pseudogene 9","termid":"PBO:0072172"}


id: PBO:0048490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GCSH pseudogene 2","termid":"PBO:0048490"}


id: PBO:0081638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 566","termid":"PBO:0081638"}


id: PBO:0067765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 65","termid":"PBO:0067765"}


id: PBO:0083099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA dependent ATPase/DNA helicase; helicase belonging to the Dna2p- and Nam7p-like family of helicases that is involved in modulating translation termination; interacts with the translation termination factors, localized to polysomes","termid":"PBO:0083099"}


id: GO:0060859
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency, or extent of the directed movement of substances within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane which are then targeted to, and fuse with, an acceptor membrane contributing to the shedding of a floral organ.","definition_xrefs":["GOC:dph","GOC:tb","GOC:sdb_2009"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of vesicle-mediated transport involved in floral organ abscission (obsolete GO:0060859)","termid":"GO:0060859"}


id: PBO:0071785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribophorin I","termid":"PBO:0071785"}


id: FYPO:0004320
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of DNA measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell","termid":"FYPO:0000989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered DNA level","synonyms":[{"name":"abnormal DNA content","type":"exact"},{"name":"abnormal DNA level","type":"exact"},{"name":"altered DNA content","type":"exact"},{"name":"altered cellular DNA level","type":"exact"}],"termid":"FYPO:0004320"}


id: PR:000085732
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3.1, initiator methionine removed form (Schizosaccharomyces pombe) that has been phosphorylated on Ser-10. Example: UniProtKB:P09988, 2-136, Ser-11, MOD:00046.","definition_xrefs":["PRO:DAN","PomBase:VW"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3.1, initiator methionine removed form (Schizosaccharomyces pombe)","termid":"PR:000027574"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hht1/Phos(S10)","pombase_gene_id":"SPAC1834.04","synonyms":[{"name":"PRO_0000221366, Ser-11, MOD:00046","type":"related"},{"name":"PomBase_original_PRO_term_name: histone H3.1, initiator methionine removed phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-hht1/InitMet-/Phos:1","type":"exact"},{"name":"UniProtKB:P09988, 2-136, Ser-11, MOD:00046","type":"related"},{"name":"hht1/Phos(S10)","type":"exact"}],"termid":"PR:000085732"}


id: PBO:0081488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 384","termid":"PBO:0081488"}


id: GO:0009821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of alkaloids, nitrogen-containing natural products which are not otherwise classified as nonprotein amino acids, amines, peptides, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones, or primary metabolite (such as purine or pyrimidine bases).","definition_xrefs":["ISBN:0122146743","GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkaloid metabolic process","termid":"GO:0009820"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"alkaloid biosynthetic process","synonyms":[{"name":"alkaloid anabolism","type":"exact"},{"name":"alkaloid biosynthesis","type":"exact"},{"name":"alkaloid formation","type":"exact"},{"name":"alkaloid synthesis","type":"exact"}],"termid":"GO:0009821"}


id: PBO:0034366
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_in-paralogy_relationship_with","termid":"PBO:0034366"}


id: GO:0042134
data:
  {"annotated_genes":["SJAG_04492","SJAG_02530","SJAG_03252","SJAG_03952","SJAG_02723"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59580,69855,73931,106982,114213],"is_not":false,"summary":null,"term":"GO:0042134"}]},"cv_name":"molecular_function","definition":"Binding to an unprocessed ribosomal RNA transcript.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA binding","termid":"GO:0019843"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02530":null,"SJAG_02723":null,"SJAG_03252":null,"SJAG_03952":null,"SJAG_04492":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003723"],"is_obsolete":false,"name":"rRNA primary transcript binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"pre-rRNA binding","type":"exact"}],"termid":"GO:0042134","terms_by_termid":{"GO:0042134":null}}


id: MONDO:0020736
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"uncombable hair syndrome","termid":"MONDO:0008621"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncombable hair syndrome 1","secondary_identifiers":["MEDGEN:1640179","OMIM:191480","UMLS:C4551573","GARD:15122"],"synonyms":[{"name":"UHS1","type":"related"},{"name":"pili trianguli Et canaliculi","type":"related"},{"name":"uncombable hair syndrome","type":"related"},{"name":"uncombable hair syndrome 1","type":"exact"}],"termid":"MONDO:0020736","xrefs":{"Monarch":{"xref_id":"0020736"}}}


id: PBO:0046391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EP400 pseudogene 1","termid":"PBO:0046391"}


id: PR:Q9UT08
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- paa1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT08"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase PP2A regulatory subunit A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP8A3.09c","synonyms":[{"name":"PR65 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-paa1","type":"exact"},{"name":"protein phosphatase 2A 65 kDa regulatory subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT08"}


id: PATO:0000101
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000101 soil nutrient sensitivity (obsolete PATO:0000101)","termid":"PATO:0000101"}


id: MONDO:0031240
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"panic disorder","termid":"MONDO:0005383"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial panic disorder","secondary_identifiers":["OMIMPS:167870"],"termid":"MONDO:0031240","xrefs":{"Monarch":{"xref_id":"0031240"}}}


id: PBO:0028551
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_rate_of_microtubule_depolymerization","termid":"PBO:0028551"}


id: PBO:0114360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane amino acid transmembrane transporter Nrg1","termid":"PBO:0114360"}


id: PBO:0117019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KRT84 and KRT82 antisense RNA 1","termid":"PBO:0117019"}


id: GO:0060454
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate frequency or extent of gastric secretion. Gastric secretion is the regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of secretion","termid":"GO:0051047"},{"relation_name":"is_a","term_name":"regulation of gastric acid secretion","termid":"GO:0060453"},{"relation_name":"is_a","term_name":"positive regulation of digestive system process","termid":"GO:0060456"},{"relation_name":"positively_regulates","term_name":"gastric acid secretion","termid":"GO:0001696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of gastric acid secretion","termid":"GO:0060454"}


id: GO:0090287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"cellular response to growth factor stimulus","termid":"GO:0071363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to growth factor stimulus","termid":"GO:0090287"}


id: GO:0030211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of heparin proteoglycans, which have glycosaminoglycan repeats consisting predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteoglycan catabolic process","termid":"GO:0030167"},{"relation_name":"is_a","term_name":"heparin proteoglycan metabolic process","termid":"GO:0030202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"heparin proteoglycan catabolic process","synonyms":[{"name":"heparan sulfate catabolic process","type":"related"},{"name":"heparin breakdown","type":"exact"},{"name":"heparin catabolism","type":"exact"},{"name":"heparin degradation","type":"exact"}],"termid":"GO:0030211"}


id: FYPO:0001181
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of maltose alpha-glucosidase (also known as maltase) activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal alpha-glucosidase activity","termid":"FYPO:0001182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"normal maltase activity","synonyms":[{"name":"normal maltose alpha-glucosidase activity","type":"exact"}],"termid":"FYPO:0001181"}


id: GO:0008516
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: hexose(out) = hexose(in).","definition_xrefs":["TC:2.A.1.1.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose transmembrane transporter activity","termid":"GO:0015149"},{"relation_name":"is_a","term_name":"uniporter activity","termid":"GO:0015292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"hexose uniporter activity","termid":"GO:0008516"}


id: PBO:0030836
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_guanine_import","termid":"PBO:0030836"}


id: GO:0032747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-23 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-23 production","termid":"GO:0032667"},{"relation_name":"positively_regulates","term_name":"interleukin-23 production","termid":"GO:0032627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-23 production","secondary_identifiers":["GO:0045398"],"synonyms":[{"name":"activation of interleukin-23 production","type":"narrow"},{"name":"positive regulation of IL-23 production","type":"exact"},{"name":"positive regulation of interleukin-23 biosynthetic process","type":"narrow"},{"name":"stimulation of interleukin-23 production","type":"narrow"},{"name":"up regulation of interleukin-23 production","type":"exact"},{"name":"up-regulation of interleukin-23 production","type":"exact"},{"name":"upregulation of interleukin-23 production","type":"exact"}],"termid":"GO:0032747"}


id: PBO:0083372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps with verified gene BUD7/YOR299W; mutation affects bipolar budding and bud site selection, though phenotype could be due to the mutation's effects on BUD7","termid":"PBO:0083372"}


id: GO:0035543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of assembly of the SNARE complex. The SNARE complex is a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers.","definition_xrefs":["GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"positive regulation of vesicle fusion","termid":"GO:0031340"},{"relation_name":"is_a","term_name":"regulation of SNARE complex assembly","termid":"GO:0035542"},{"relation_name":"positively_regulates","term_name":"SNARE complex assembly","termid":"GO:0035493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0016192","GO:0061024","GO:0044085","GO:0006810"],"is_obsolete":false,"name":"positive regulation of SNARE complex assembly","termid":"GO:0035543"}


id: GO:0000051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving any of the intermediate compounds involved in the urea cycle, a cyclic metabolic pathway that converts waste nitrogen in the form of ammonium to urea.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete urea cycle intermediate metabolic process (obsolete GO:0000051)","synonyms":[{"name":"urea cycle intermediate metabolic process","type":"exact"},{"name":"urea cycle intermediate metabolism","type":"exact"}],"termid":"GO:0000051"}


id: GO:1901440
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving poly(hydroxyalkanoate).","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"poly(hydroxyalkanoate) metabolic process","synonyms":[{"name":"poly(hydroxyalkanoate) metabolism","type":"exact"}],"termid":"GO:1901440"}


id: GO:0031136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the rate or frequency of conjugation.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of conjugation (obsolete GO:0031136)","synonyms":[{"name":"activation of conjugation","type":"narrow"},{"name":"stimulation of conjugation","type":"narrow"},{"name":"up regulation of conjugation","type":"exact"},{"name":"up-regulation of conjugation","type":"exact"},{"name":"upregulation of conjugation","type":"exact"}],"termid":"GO:0031136"}


id: PBO:0054596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1999","termid":"PBO:0054596"}


id: GO:0061529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of epinephrine by a cell in which the epinephrine acts as a neurotransmitter.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epinephrine secretion","termid":"GO:0048242"},{"relation_name":"is_a","term_name":"catecholamine secretion, neurotransmission","termid":"GO:0160043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"epinephrine secretion, neurotransmission","synonyms":[{"name":"adrenaline secretion, neurotransmission","type":"exact"}],"termid":"GO:0061529"}


id: MONDO:0017076
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Posterior meningocele is a rare neural tube closure defect characterized by the herniation of a cerebrospinal fluid-filled sac, that is lined by dura and arachnoid mater, through a posterior spina bifida and covered by a layer of skin of variable thickness, which may be dysplastic or ulcerated. The spinal cord and nerves are generally not included and function normally, although sometimes a tethered cord may be associated. They are most commonly located in the lumbar or sacral region.","definition_xrefs":["Orphanet:268810"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spina bifida cystica","termid":"MONDO:0017069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"posterior meningocele","secondary_identifiers":["MEDGEN:1806905","UMLS:C5680741","GARD:20965","icd11.foundation:1464755755"],"termid":"MONDO:0017076","xrefs":{"Monarch":{"xref_id":"0017076"}}}


id: PBO:0050282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heme oxygenase 2","termid":"PBO:0050282"}


id: FYECO:0000125
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Cells were grown to exponential phase.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping growth timing","termid":"FYECO:0000122"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth to exponential phase","termid":"FYECO:0000125"}


id: MONDO:0700250
data:
  {"annotated_genes":["SJAG_03046"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87562],"is_not":false,"summary":null,"term":"MONDO:0700250"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex IV deficiency, nuclear-type","termid":"MONDO:0033885"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03046":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex IV deficiency, nuclear type 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15158","MEDGEN:1750917","OMIM:220110","UMLS:C5435656","DOID:0070491"],"termid":"MONDO:0700250","terms_by_termid":{"MONDO:0700250":null},"xrefs":{"Monarch":{"xref_id":"0700250"}}}


id: PBO:0066394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor accessory protein 4","termid":"PBO:0066394"}


id: GO:0006504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent or non-covalent attachment of a geranylgeranyl group to the carboxy-terminus of a protein.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal protein geranylgeranylation (obsolete GO:0006504)","synonyms":[{"name":"C-terminal protein geranylgeranylation","type":"exact"}],"termid":"GO:0006504"}


id: PATO:0001083
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001083 acceleration value (obsolete PATO:0001083)","termid":"PATO:0001083"}


id: PBO:0064393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphomevalonate kinase","termid":"PBO:0064393"}


id: PBO:0081402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 250","termid":"PBO:0081402"}


id: PBO:0028608
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-RNA_absent_from_cell_during_cellular_response_to_thiamine_starvation","termid":"PBO:0028608"}


id: PBO:0067774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 74","termid":"PBO:0067774"}


id: GO:0070746
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to interleukin-35.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine binding","termid":"GO:0019955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"interleukin-35 binding","synonyms":[{"name":"IL-35 binding","type":"exact"}],"termid":"GO:0070746"}


id: GO:1990177
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein-DNA complex containing IHF heterodimers (an alpha and a beta chain) bound to DNA. IHF binds to double-stranded DNA in a structure- and sequence-specific manner and bends the DNA into a nucleosome-like structure, the bacterial nucleoid.","definition_xrefs":["PMID:17097674","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-DNA complex","termid":"GO:0032993"},{"relation_name":"is_a","term_name":"DNA bending complex","termid":"GO:1990104"},{"relation_name":"part_of","term_name":"bacterial nucleoid","termid":"GO:0043590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"IHF-DNA complex","synonyms":[{"name":"IHF complex","type":"exact"},{"name":"IHFa-IHFb-DNA complex","type":"exact"}],"termid":"GO:1990177"}


id: GO:2000769
data:
  {"annotated_genes":["SJAG_00661","SJAG_03581","SJAG_04509","SJAG_00845","SJAG_04666","SJAG_02536","SJAG_04522","SJAG_00333","SJAG_00610","SJAG_01799","SJAG_04461","SJAG_03637","SJAG_02022","SJAG_00596","SJAG_00236","SJAG_02222"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88243,92764,103163,106432],"is_not":false,"summary":null,"term":"GO:2000769"},{"annotations":[116884,107928],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000784"},{"annotations":[94081,105680,100500],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000247"},{"annotations":[104019],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061361"},{"annotations":[113354,91479,119088,94919,95993,104852],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000100"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of establishment or maintenance of cell polarity regulating cell shape.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell shape","termid":"GO:0008360"},{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of cell polarity","termid":"GO:0032878"},{"relation_name":"regulates","term_name":"establishment or maintenance of cell polarity regulating cell shape","termid":"GO:0071963"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00236":null,"SJAG_00333":null,"SJAG_00596":null,"SJAG_00610":null,"SJAG_00661":null,"SJAG_00845":null,"SJAG_01799":null,"SJAG_02022":null,"SJAG_02222":null,"SJAG_02536":null,"SJAG_03581":null,"SJAG_03637":null,"SJAG_04461":null,"SJAG_04509":null,"SJAG_04522":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"regulation of establishment or maintenance of cell polarity regulating cell shape","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:2000769","terms_by_termid":{"GO:0061361":null,"GO:2000100":null,"GO:2000247":null,"GO:2000769":null,"GO:2000784":null}}


id: GO:0102818
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: lycopene + 2 O2 = 2 sulcatone + bixin aldehyde.","definition_xrefs":["GOC:pz","MetaCyc:RXN-8236"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)","termid":"GO:0016703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"lycopene cleavage oxygenase activity","termid":"GO:0102818"}


id: MONDO:0017658
data:
  {"annotated_genes":["SJAG_04203"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86891],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044330"}]},"cv_name":"mondo","definition":"A neurologic disorder classically characterized by pronounced startle responses to tactile or acoustic stimuli and hypertonia","definition_xrefs":["Wikipedia:Hyperekplexia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04203":null},"genotype_count":0,"is_obsolete":false,"name":"hyperekplexia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0234166","GARD:21281","MEDGEN:488800","MESH:D000071017","Orphanet:306773"],"termid":"MONDO:0017658","terms_by_termid":{"MONDO:0044330":null},"xrefs":{"Monarch":{"xref_id":"0017658"}}}


id: GO:0140812
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: orotate(out) + anion (in) = orotate (in) + anion (out).","definition_xrefs":["PMID:35144162","PMID:21350910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion transmembrane transporter activity","termid":"GO:0008509"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"},{"relation_name":"is_a","term_name":"secondary active monocarboxylate transmembrane transporter activity","termid":"GO:0015355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"orotate:monoatomic anion antiporter activity","synonyms":[{"name":"orotate:anion antiporter activity","type":"broad"},{"name":"orotate:organic anion antiporter activity","type":"narrow"}],"termid":"GO:0140812"}


id: MONDO:0021096
data:
  {"annotated_genes":["SJAG_01144"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86513],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0003789"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial neoplasm","termid":"MONDO:0005626"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01144":null},"genotype_count":0,"is_obsolete":false,"name":"papillary epithelial neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:235456","NCIT:C8429","UMLS:C1335324"],"synonyms":[{"name":"papillary epithelial neoplasm","type":"exact"}],"termid":"MONDO:0021096","terms_by_termid":{"MONDO:0003789":null},"xrefs":{"Monarch":{"xref_id":"0021096"}}}


id: PBO:0077407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 141","termid":"PBO:0077407"}


id: GO:0006466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein disulfide-isomerase reaction (obsolete GO:0006466)","synonyms":[{"name":"protein disulfide-isomerase reaction","type":"exact"},{"name":"protein disulphide-isomerase reaction","type":"exact"}],"termid":"GO:0006466"}


id: PBO:0043669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme Q10B pseudogene 1","termid":"PBO:0043669"}


id: MONDO:0024346
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"exanthem","termid":"MONDO:0006547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"pityriasis amiantacea","secondary_identifiers":["icd11.foundation:210953452","ICD9:696.5","SCTID:238924007","MEDGEN:575384","UMLS:C0343100"],"synonyms":[{"name":"pityriasis amiantacea","type":"exact"},{"name":"tinea amiantacea","type":"related"}],"termid":"MONDO:0024346","xrefs":{"Monarch":{"xref_id":"0024346"}}}


id: MONDO:0005673
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder affecting the small intestine. It is caused by the stasis of food and subsequent overgrowth of bacteria in a portion of the small intestine that is unintentionally bypassed as a complication of abdominal surgery or as a sequela of gastrointestinal disorders which impede effective motility. Clinical signs include bloating, abdominal pain, diarrhea and weight loss. If untreated, the clinical course progresses to malabsorption of fats, vitamin B12 and calcium, the latter which predisposes to nephrolithiasis and osteoporosis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malabsorption syndrome","termid":"MONDO:0020598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"blind loop syndrome","secondary_identifiers":["icd11.foundation:1719064637","NCIT:C34431","SCTID:66379009","DOID:10606","EFO:0007175","MEDGEN:600","ICD9:579.2","UMLS:C0005750","MESH:D001765"],"synonyms":[{"name":"bacterial overgrowth syndrome","type":"exact"},{"name":"blind loop syndrome","type":"exact"},{"name":"stasis (blind loop) syndrome","type":"exact"},{"name":"stasis syndrome","type":"exact"}],"termid":"MONDO:0005673","xrefs":{"Monarch":{"xref_id":"0005673"}}}


id: GO:0140055
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A histone reader that recognizes a histone H4 acetylated at lysine 8.","definition_xrefs":["PMID:17996705"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4 reader activity","termid":"GO:0140008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140566"}],"interesting_parent_ids":["GO:0060090","GO:0003674","GO:0140566","GO:0030674"],"is_obsolete":false,"name":"histone H4K8ac reader activity","synonyms":[{"name":"H4K8ac modified histone binding","type":"narrow"}],"termid":"GO:0140055"}


id: MONDO:1012233
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"quaking, non-human animal","termid":"MONDO:1011629"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quaking, golden hamster","secondary_identifiers":["OMIA:000846-10036"],"termid":"MONDO:1012233","xrefs":{"Monarch":{"xref_id":"1012233"}}}


id: PATO:0002519
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone.","definition_xrefs":["TheFreeDictionary:cancellous"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancellous","termid":"PATO:0002519"}


id: PBO:0077917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPT1 pseudogene 8","termid":"PBO:0077917"}


id: MONDO:0001164
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by a pervasive pattern of disregard for and violation of the rights of others that is manifested in childhood or early adolescence. (adapted from DSM-IV)","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"personality disorder","termid":"MONDO:0002028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antisocial personality disorder","secondary_identifiers":["MESH:D000987","DOID:10939","ICD9:301.7","ICD10CM:F60.2","UMLS:C0003431","SCTID:26665006","icd11.foundation:779282819","MEDGEN:1611","NCIT:C88413"],"synonyms":[{"name":"Sociopathy","type":"exact"},{"name":"asocial personality","type":"exact"},{"name":"dissocial personality disorder","type":"exact"},{"name":"psychopath.personality","type":"exact"},{"name":"psychopathic personality","type":"exact"},{"name":"psychopathic personality disorder","type":"exact"},{"name":"psychopathy","type":"exact"},{"name":"sociopathic personality","type":"exact"}],"termid":"MONDO:0001164","xrefs":{"Monarch":{"xref_id":"0001164"}}}


id: PBO:0056840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MGAT4 family member E, pseudogene","termid":"PBO:0056840"}


id: PBO:0044482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 26 subfamily B member 1","termid":"PBO:0044482"}


id: FYPO:0005746
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of protein export from nucleus is decreased when the cell is subject to glucose starvation. Export of all proteins or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein export from nucleus","termid":"FYPO:0005745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein export from nucleus during glucose starvation","synonyms":[{"name":"decreased protein export from nucleus during cellular response to glucose starvation","type":"exact"},{"name":"decreased protein export from nucleus during glucose depletion","type":"exact"},{"name":"decreased protein export from nucleus during glucose deprivation","type":"exact"},{"name":"decreased protein export from nucleus during glucose limitation","type":"related"},{"name":"reduced protein export from nucleus during glucose starvation","type":"exact"}],"termid":"FYPO:0005746"}


id: PBO:0067714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal 12","termid":"PBO:0067714"}


id: PBO:0029645
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell_population_at_high_temperature_(obsolete_FYPO:0002075)","termid":"PBO:0029645"}


id: PBO:0075512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal peptidase complex subunit 2 pseudogene 3","termid":"PBO:0075512"}


id: MOD:01559
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the O4'-hydrogen atom of a tyrosine residue with the Applied Biosystems iTRAQ8plex-117 reporter+balance group.","definition_xrefs":["Unimod:730#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"iTRAQ8plex-117 reporter+balance reagent acylated residue","termid":"MOD:01556"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-117 reporter+balance reagent O4'-acylated tyrosine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 113, 114, 116 & 117","type":"related"},{"name":"iTRAQ8plex","type":"related"},{"name":"iTRAQ8plex:13C(7)15N(1)","type":"related"}],"termid":"MOD:01559"}


id: GO:0003391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of an amphid sensory organ's neuronal dendrite over time by the attachment of a part of the cell to an anchor and the subsequent migration of the cell body away from the anchor point.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendrite development by retrograde extension","termid":"GO:0003390"},{"relation_name":"part_of","term_name":"neuron development involved in amphid sensory organ development","termid":"GO:0003388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amphid sensory organ dendrite retrograde extension","termid":"GO:0003391"}


id: GO:2000677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of transcription regulatory region DNA binding.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA binding","termid":"GO:0051101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of transcription regulatory region DNA binding","termid":"GO:2000677"}


id: PBO:0045761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ethylmalonyl-CoA decarboxylase 1","termid":"PBO:0045761"}


id: PR:Q6LA56
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An NAD kinase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized kinase C3H5.11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H5.11","secondary_identifiers":["UniProtKB:Q6LA56"],"synonyms":[{"name":"Spom972h-NADK","type":"exact"}],"termid":"PR:Q6LA56"}


id: PBO:0029209
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_cobalt","termid":"PBO:0029209"}


id: GO:0007503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the fat body over time, from its formation to the mature structure. A fat body is an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism.","definition_xrefs":["ISBN:0582227089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fat body development","termid":"GO:0007503"}


id: PBO:0036476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA splicing factor","termid":"PBO:0036476"}


id: PBO:0069100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 347, pseudogene","termid":"PBO:0069100"}


id: PBO:0083724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential 107kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; involved in assembly of the exocyst complex; required with Sec3p for ER inheritance where it promotes anchoring of the cortical ER at the bud tip","termid":"PBO:0083724"}


id: PBO:0028548
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_RNA_level_during_cellular_response_to_iron_ion_starvation","termid":"PBO:0028548"}


id: PBO:0084217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homolog of mammalian ELMO (Engulfment and celL MOtility); upstream component for regulation through the small GTPase Rho5p; may form a complex with Dck1p that acts as a GEF for Rho5p; cytoplasmic protein that relocates to mitochondria under oxidative stress; implicated in mitophagy; not an essential protein","termid":"PBO:0084217"}


id: GO:0046875
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an ephrin receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"ephrin receptor binding","synonyms":[{"name":"Eph receptor binding","type":"exact"},{"name":"GPI-linked ephrin","type":"narrow"},{"name":"ephrin","type":"narrow"},{"name":"transmembrane ephrin","type":"narrow"}],"termid":"GO:0046875"}


id: GO:0035555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a SLIT protein causes activation of the receptor, Roundabout (ROBO).","definition_xrefs":["GOC:vk"],"gene_count":0,"genotype_count":0,"name":"obsolete initiation of Roundabout signal transduction (obsolete GO:0035555)","synonyms":[{"name":"initiation of Roundabout signal transduction","type":"exact"}],"termid":"GO:0035555"}


id: FYPO:0006783
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more carbohydrate metabolism RNAs measured in a cell is higher than normal (i.e. higher than observed in wild-type cells). Carbohydrate metabolism RNAs are transcribed from genes whose products are involved in metabolism of one or more carbohydrates.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"increased level of carbohydrate metabolism gene mRNA during vegetative growth","synonyms":[{"name":"increased carbohydrate metabolism gene mRNA accumulation during vegetative growth","type":"related"},{"name":"increased level of carbohydrate metabolism gene RNA during vegetative growth","type":"exact"},{"name":"increased level of carbohydrate metabolism gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of carbohydrate metabolism gene transcripts during vegetative growth","type":"exact"}],"termid":"FYPO:0006783"}


id: PBO:0040309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit alpha pseudogene 1","termid":"PBO:0040309"}


id: SO:0002371
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A scaRNA possessing both box C/D and box H/ACA sequence motifs, guiding both the methylation and pseudouridylation of snRNAs.","definition_xrefs":["PMID:24659245","PMID:17099227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"scaRNA","termid":"SO:0002095"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-D_H_ACA_box_scaRNA","synonyms":[{"name":"C/D-H/ACA scaRNA","type":"exact"}],"termid":"SO:0002371"}


id: GO:0006561
data:
  {"annotated_genes":["SJAG_00120","SJAG_00495","SJAG_03457","SJAG_00660"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[67526,78263,91222,64674],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0055129"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proline metabolic process","termid":"GO:0006560"},{"relation_name":"is_a","term_name":"glutamine family amino acid biosynthetic process","termid":"GO:0009084"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00120":null,"SJAG_00495":null,"SJAG_00660":null,"SJAG_03457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"proline biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"proline anabolism","type":"exact"},{"name":"proline biosynthesis","type":"exact"},{"name":"proline formation","type":"exact"},{"name":"proline synthesis","type":"exact"}],"termid":"GO:0006561","terms_by_termid":{"GO:0055129":null}}


id: PBO:0002078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial 2-oxoadipate and 2-oxoglutarate transporter (predicted)","termid":"PBO:0002078"}


id: GO:0051131
data:
  {"annotated_genes":["SJAG_03784","SJAG_01545","SJAG_00984"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[67484,76451,76888],"is_not":false,"summary":null,"term":"GO:0051131"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00984":null,"SJAG_01545":null,"SJAG_03784":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"chaperone-mediated protein complex assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null},"secondary_identifiers":["GO:0034619"],"synonyms":[{"name":"cellular chaperone-mediated protein complex assembly","type":"exact"},{"name":"chaperone activity","type":"related"},{"name":"protein complex assembly, multichaperone pathway","type":"exact"}],"termid":"GO:0051131","terms_by_termid":{"GO:0051131":null}}


id: PBO:0068604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 55, pseudogene","termid":"PBO:0068604"}


id: MONDO:0000878
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infection of the retina by cytomegalovirus characterized by retinal necrosis, hemorrhage, vessel sheathing, and retinal edema. Cytomegalovirus retinitis is a major opportunistic infection in aids patients and can cause blindness.","definition_xrefs":["MESH:D017726"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis","termid":"MONDO:0002708"},{"relation_name":"is_a","term_name":"cytomegalovirus infection","termid":"MONDO:0005132"},{"relation_name":"is_a","term_name":"endophthalmitis","termid":"MONDO:0016047"},{"relation_name":"is_a","term_name":"infectious disorder of the nervous system","termid":"MONDO:0020010"},{"relation_name":"is_a","term_name":"viral eye infection","termid":"MONDO:0020950"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cytomegalovirus retinitis","secondary_identifiers":["UMLS:C0206178","GARD:9531","DOID:0080160","MEDGEN:61532","NCIT:C50521","EFO:1001302","SCTID:22455005"],"synonyms":[{"name":"CMV retinitis","type":"exact"},{"name":"Cytomegaloviral Retinitis","type":"exact"},{"name":"Cytomegalovirus caused retinitis","type":"exact"},{"name":"Cytomegalovirus retinitis","type":"exact"},{"name":"Retinitis, Cytomegaloviral","type":"exact"},{"name":"cytomegalovirus retinitis","type":"exact"}],"termid":"MONDO:0000878","xrefs":{"Monarch":{"xref_id":"0000878"}}}


id: MONDO:0024488
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A modifier that can be applied to a tumor class describing abnormal tumor histology or morphology. It is an indicator of how quickly a tumor is likely to grow and spread","direct_ancestors":[{"relation_name":"is_a","term_name":"disease characteristic","termid":"MONDO:0021125"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor grading characteristic","termid":"MONDO:0024488","xrefs":{"Monarch":{"xref_id":"0024488"}}}


id: PBO:0000481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prefoldin subunit 3 Pac10 (predicted)","termid":"PBO:0000481"}


id: GO:0003960
data:
  {"annotated_genes":["SJAG_03476"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74726],"is_not":false,"summary":null,"term":"GO:0003960"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NADPH + H+ + quinone = NADP+ + semiquinone.","definition_xrefs":["EC:1.6.5.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NADPH dehydrogenase activity","termid":"GO:0003959"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor","termid":"GO:0016655"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03476":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"NADPH:quinone reductase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:QOR-RXN","Reactome:R-HSA-6799722","RHEA:14269"],"synonyms":[{"name":"NADPH:quinone oxidoreductase activity","type":"related"},{"name":"quinone oxidoreductase activity","type":"broad"},{"name":"zeta-crystallin activity","type":"narrow"}],"termid":"GO:0003960","terms_by_termid":{"GO:0003960":null}}


id: MONDO:0009426
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sanjad-Sakati syndrome (SSS), also known as hypoparathyroidism - intellectual disability-dysmorphism, is a rare multiple congenital anomaly syndrome, mainly occurring in the Middle East and the Arabian Gulf countries, characterized by intrauterine growth restriction at birth, microcephaly, congenital hypoparathyroidism (that can cause hypocalcemic tetany or seizures in infancy), severe growth retardation, typical facial features (long narrow face, deep-set eyes, beaked nose, floppy and large ears, long philtrum, thin lips and micrognathia), and mild to moderate intellectual deficiency. Ocular findings (i.e. nanophthalmos, retinal vascular tortuosity and corneal opacification/clouding) and superior mesenteric artery syndrome have also been reported. Although SSS shares the same locus with the autosomal recessive form of Kenny-Caffey syndrome, the latter differs from SSS by its normal intelligence and skeletal features.","definition_xrefs":["Orphanet:2323"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"primordial dwarfism and slender bone disorder","termid":"MONDO:0800063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"hypoparathyroidism-retardation-dysmorphism syndrome","secondary_identifiers":["GARD:411","NCIT:C133727","DOID:0060348","MEDGEN:340984","MESH:C537157","UMLS:C1855840","OMIM:241410"],"synonyms":[{"name":"HRD","type":"related"},{"name":"HRD syndrome","type":"exact"},{"name":"HRDS","type":"exact"},{"name":"Richardson-Kirk syndrome","type":"exact"},{"name":"SSS","type":"exact"},{"name":"Sanjad-Sakati syndrome","type":"exact"},{"name":"hypoparathyroidism with short stature, intellectual disability and seizures","type":"exact"},{"name":"hypoparathyroidism with short stature, intellectual disability, and seizures","type":"related"},{"name":"hypoparathyroidism with short stature, mental retardation and seizures","type":"exact"},{"name":"hypoparathyroidism with short stature, mental retardation, and seizures","type":"related"},{"name":"hypoparathyroidism, congenital, associated with Dysmorphism, Growth retardation, and developmental delay","type":"related"},{"name":"hypoparathyroidism, congenital, associated with dysmorphism, growth retardation and developmental delay","type":"related"},{"name":"hypoparathyroidism-intellectual disability-dysmorphism syndrome","type":"exact"},{"name":"hypoparathyroidism-retardation-dysmorphism syndrome","type":"exact"},{"name":"hypoparathyroidism-short stature-intellectual disability-seizures syndrome","type":"exact"}],"termid":"MONDO:0009426","xrefs":{"Monarch":{"xref_id":"0009426"}}}


id: PBO:0088628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA methyltransferase Spb1","termid":"PBO:0088628"}


id: MONDO:0008729
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital adrenal hyperplasia due to 11 beta-hydroxylase (CYP11B1) deficiency is a rare form of congenital adrenal hyperplasia (CAH) characterized by glucocorticoid deficiency, hyperandrogenism, hypertension and virilization in females.","definition_xrefs":["Orphanet:90795"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"},{"relation_name":"is_a","term_name":"congenital adrenal hyperplasia","termid":"MONDO:0018479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"congenital adrenal hyperplasia due to 11-beta-hydroxylase deficiency","secondary_identifiers":["NANDO:1200400","MEDGEN:82783","NCIT:C131085","GARD:5658","SCTID:124214007","MESH:C535978","OMIM:202010","ICD9:277.6","UMLS:C0268292","NANDO:2200372","MedDRA:10000002","icd11.foundation:791376680"],"synonyms":[{"name":"11-Beta-Hydroxylase deficiency","type":"related"},{"name":"CAH due to 11-beta-hydroxylase deficiency","type":"exact"},{"name":"CYP11B1 deficiency","type":"exact"},{"name":"P450C11B1 deficiency","type":"related"},{"name":"adrenal hyperplasia 4","type":"related"},{"name":"adrenal hyperplasia IV","type":"related"},{"name":"adrenal hyperplasia hypertensive form","type":"related"},{"name":"adrenal hyperplasia, congenital, due to 11-beta-hydroxylase deficiency","type":"exact"},{"name":"adrenal hyperplasia, congenital, due to steroid 11-BETA-HYDROXYLASE deficiency","type":"related"},{"name":"adrenal hyperplasia, hypertensive form","type":"related"},{"name":"steroid 11-Beta-Hydroxylase deficiency","type":"related"}],"termid":"MONDO:0008729","xrefs":{"Monarch":{"xref_id":"0008729"}}}


id: MONDO:0010251
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 50","secondary_identifiers":["DOID:0112029","UMLS:C1848087","MESH:C564713","OMIM:300115","MEDGEN:376278","GARD:22668"],"synonyms":[{"name":"MRX50","type":"exact"},{"name":"intellectual developmental disorder, X-linked 50","type":"exact"},{"name":"intellectual disability, X-linked 50","type":"exact"},{"name":"mental retardation, X-linked 50","type":"related"}],"termid":"MONDO:0010251","xrefs":{"Monarch":{"xref_id":"0010251"}}}


id: GO:0051731
data:
  {"annotated_genes":["SJAG_01791","SJAG_01979","SJAG_03789","SJAG_00956","SJAG_02680"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71876],"is_not":false,"summary":null,"term":"GO:0051731"},{"annotations":[88472,71105],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046404"},{"annotations":[93811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051736"},{"annotations":[61793],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051730"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NTP + 5'-dephosphopolynucleotide = NDP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"nucleobase-containing compound kinase activity","termid":"GO:0019205"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00956":null,"SJAG_01791":null,"SJAG_01979":null,"SJAG_02680":null,"SJAG_03789":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016301","GO:0016740"],"is_obsolete":false,"name":"polynucleotide 5'-hydroxyl-kinase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"5'-dephosphopolynucleotide kinase activity","type":"exact"},{"name":"5'-hydroxyl polynucleotide kinase activity","type":"exact"},{"name":"PNK","type":"related"},{"name":"polynucleotide 5'-hydroxy-kinase activity","type":"exact"},{"name":"polynucleotide 5'-hydroxyl kinase (phosphorylating) activity","type":"exact"},{"name":"polynucleotide kinase activity","type":"broad"}],"termid":"GO:0051731","terms_by_termid":{"GO:0046404":null,"GO:0051730":null,"GO:0051731":null,"GO:0051736":null}}


id: PBO:0012559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein sequence feature","termid":"PBO:0012559"}


id: PBO:0004811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-phosphate beta-glucosyltransferase Alg5 (predicted)","termid":"PBO:0004811"}


id: PR:O74356
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC25D12.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase C25D12.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC25D12.06","synonyms":[{"name":"Spom972h-SPBC25D12.06","type":"exact"}],"termid":"PR:O74356"}


id: FYPO:0006623
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-3,4,5-trisphosphate measured in the plasma membrane is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased phosphatidylinositol phosphate level in plasma membrane","termid":"FYPO:0006222"},{"relation_name":"is_a","term_name":"decreased cellular phosphatidylinositol-3,4,5-trisphosphate level","termid":"FYPO:0006486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased phosphatidylinositol-3,4,5-trisphosphate level in plasma membrane","synonyms":[{"name":"decreased 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate level in plasma membrane","type":"exact"},{"name":"decreased phosphatidylinositol-3,4,5-trisphosphate level in cell membrane","type":"exact"},{"name":"decreased phosphatidylinositol-3,4,5-trisphosphate level in plasma membrane during mitotic cell cycle","type":"related"},{"name":"decreased phosphatidylinositol-3,4,5-trisphosphate level in plasma membrane during vegetative growth","type":"exact"},{"name":"decreased plasma membrane PI(3,4,5)P3 level","type":"exact"},{"name":"decreased plasma membrane phosphatidylinositol-3,4,5-trisphosphate level","type":"exact"},{"name":"reduced phosphatidylinositol-3,4,5-trisphosphate level in plasma membrane","type":"exact"}],"termid":"FYPO:0006623"}


id: PBO:0027665
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_chromatin_silencing_at_telomere","termid":"PBO:0027665"}


id: PATO:0001879
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concave 3-D shape","termid":"PATO:0002008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U-shaped","synonyms":[{"name":"horseshoe","type":"narrow"},{"name":"horseshoe shaped","type":"exact"}],"termid":"PATO:0001879"}


id: PBO:0084316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"JmjC domain family histone demethylase specific for H3-K36; similar to proteins found in human, mouse, drosophila, X. laevis, C. elegans, and S. pombe","termid":"PBO:0084316"}


id: GO:0000292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a fragment of RNA, such as excised introns or sequences removed from ribosomal RNA during processing.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA catabolic process","termid":"GO:0006401"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"RNA fragment catabolic process","secondary_identifiers":["GO:0030452"],"synonyms":[{"name":"RNA fragment breakdown","type":"exact"},{"name":"RNA fragment catabolism","type":"exact"},{"name":"RNA fragment degradation","type":"exact"},{"name":"group I intron catabolic process","type":"narrow"}],"termid":"GO:0000292"}


id: PR:000027572
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fungal histone H3.2 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PomBase:MAH","PMID:11242054","PMID:20929775"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fungal histone H3.2","termid":"PR:000027571"},{"relation_name":"is_a","term_name":"core histone (Schizosaccharomyces pombe)","termid":"PR:000041293"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3.2 (Schizosaccharomyces pombe)","pombase_gene_id":"SPBC8D2.04","synonyms":[{"name":"SPBC8D2.04, PI060","type":"related"},{"name":"Spom-hht2","type":"exact"}],"termid":"PR:000027572"}


id: GO:0032525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment, maintenance and elaboration of the rostro-caudal axis of a somite, prior to the morphological formation of a somite boundary.","definition_xrefs":["PMID:16326386","GOC:bf","PMID:17360776"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic axis specification","termid":"GO:0000578"},{"relation_name":"is_a","term_name":"anterior/posterior axis specification","termid":"GO:0009948"},{"relation_name":"part_of","term_name":"somitogenesis","termid":"GO:0001756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"somite rostral/caudal axis specification","synonyms":[{"name":"somite rostrocaudal axis specification","type":"exact"},{"name":"somite rostrocaudal polarity","type":"related"}],"termid":"GO:0032525"}


id: PATO:0001994
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellularity","termid":"PATO:0001992"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unicellular","termid":"PATO:0001994"}


id: _global:is_unit_of
data:
  {"annotation_feature_type":"gene","cv_name":"pato.ontology","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_unit_of","termid":"_global:is_unit_of"}


id: GO:0005241
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete inward rectifier channel (obsolete GO:0005241)","synonyms":[{"name":"inward rectifier channel","type":"exact"}],"termid":"GO:0005241"}


id: PBO:0085615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in DNA replication; component of the Mcm2-7 hexameric helicase complex that binds chromatin as a part of the pre-replicative complex; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0085615"}


id: PBO:0080359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 2 receptor 14 pseudogene","termid":"PBO:0080359"}


id: PBO:0044279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-X-C motif chemokine receptor 2 pseudogene 1","termid":"PBO:0044279"}


id: PBO:0030656
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mating_efficiency","termid":"PBO:0030656"}


id: GO:2000645
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of receptor catabolic process.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"negative regulation of macromolecule metabolic process","termid":"GO:0010605"},{"relation_name":"is_a","term_name":"regulation of receptor catabolic process","termid":"GO:2000644"},{"relation_name":"negatively_regulates","term_name":"receptor catabolic process","termid":"GO:0032801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044248","GO:0008150"],"is_obsolete":false,"name":"negative regulation of receptor catabolic process","synonyms":[{"name":"negative regulation of receptor breakdown","type":"exact"},{"name":"negative regulation of receptor catabolism","type":"exact"},{"name":"negative regulation of receptor degradation","type":"exact"}],"termid":"GO:2000645"}


id: GO:0008636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Upregulation of the activity of a caspase, a group of cysteine proteases involved in apoptosis, by the addition of a phosphate group.","definition_xrefs":["GOC:jl","GOC:tb","GOC:dph","PMID:14744432","Wikipedia:Caspase"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of caspase activity by protein phosphorylation (obsolete GO:0008636)","synonyms":[{"name":"activation of caspase activity by protein amino acid phosphorylation","type":"exact"},{"name":"activation of caspase activity by protein phosphorylation","type":"exact"},{"name":"caspase activation via phosphorylation","type":"exact"}],"termid":"GO:0008636"}


id: GO:0044351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An endocytosis process that results in the uptake of liquid material by cells from their external environment by the 'ruffling' of the cell membrane to form heterogeneously sized intracellular vesicles called macropinosomes, which can be up to 5 micrometers in size.","definition_xrefs":["PMID:14732047"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pinocytosis","termid":"GO:0006907"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"macropinocytosis","secondary_identifiers":["GO:1902538"],"synonyms":[{"name":"clathrin-independent pinocytosis","type":"broad"},{"name":"single-organism macropinocytosis","type":"related"}],"termid":"GO:0044351"}


id: FYPO:0004764
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the meiotic spindle pole body is normal (i.e. indistinguishable from wild type) during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to meiotic spindle pole body","termid":"FYPO:0003541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to meiotic spindle pole body during meiosis I","synonyms":[{"name":"normal protein localisation to meiotic spindle pole body during meiosis I","type":"exact"},{"name":"normal protein localization to meiotic SPB during meiosis I","type":"exact"},{"name":"normal protein localization to meiotic spindle pole body during first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0004764"}


id: MONDO:0011934
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dermatofibrosarcoma protuberans (DFSP) is a rare infiltrating soft tissue sarcoma, generally of low grade malignancy, arising from the dermis of the skin and characteristically associated with a specific chromosomal translocation t(17;22).","definition_xrefs":["Orphanet:31112"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare skin tumor or hamartoma (obsolete MONDO:0019300)","termid":"MONDO:0019300"},{"relation_name":"is_a","term_name":"integumentary system cancer","termid":"MONDO:0000653"},{"relation_name":"is_a","term_name":"fibrosarcoma","termid":"MONDO:0005164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"dermatofibrosarcoma protuberans","secondary_identifiers":["GARD:9569","UMLS:C3693482","MEDGEN:811326","ONCOTREE:DFSP","NCIT:C4683","MESH:D018223","OMIM:607907","DOID:3507","icd11.foundation:1579898301","MedDRA:10057070","SCTID:276799004","ICDO:8832/3"],"synonyms":[{"name":"DFSP","type":"exact"},{"name":"dermatofibrosarcoma","type":"exact"},{"name":"dermatofibrosarcoma protuberans","type":"exact"},{"name":"familial dermatofibrosarcoma protuberans (subtype)","type":"related"},{"name":"giant cell fibroblastoma","type":"related"},{"name":"metastatic dermatofibrosarcoma protuberans (subtype)","type":"related"}],"termid":"MONDO:0011934","xrefs":{"Monarch":{"xref_id":"0011934"}}}


id: GO:0007463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the R2/R5 photoreceptors commit to their cell fate. R2 and R5 are paired photoreceptors which contribute the outer rhabdomeres.","definition_xrefs":["PMID:3076112","PMID:3937883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound eye photoreceptor fate commitment","termid":"GO:0001752"},{"relation_name":"part_of","term_name":"R2/R5 cell differentiation","termid":"GO:0048054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"R2/R5 cell fate commitment","termid":"GO:0007463"}


id: GO:0016259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving selenocysteine, an essential component of glutathione peroxidase and some other proteins.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine family amino acid metabolic process","termid":"GO:0009069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"selenocysteine metabolic process","secondary_identifiers":["Reactome:R-HSA-2408522"],"synonyms":[{"name":"selenocysteine metabolism","type":"exact"}],"termid":"GO:0016259"}


id: MONDO:0033261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0000426"],"is_obsolete":false,"name":"hearing loss, autosomal dominant 34, with or without inflammation","secondary_identifiers":["MEDGEN:1626346","DOID:0080270","OMIM:617772","UMLS:C4521680"],"synonyms":[{"name":"DFNA34","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 34","type":"narrow"},{"name":"deafness, autosomal dominant 34, with or without inflammation","type":"narrow"}],"termid":"MONDO:0033261","xrefs":{"Monarch":{"xref_id":"0033261"}}}


id: GO:0042783
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which an organism avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mb","PMID:12439615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host immune response","termid":"GO:0052553"},{"relation_name":"is_a","term_name":"response to host immune response","termid":"GO:0052572"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated evasion of host immune response","secondary_identifiers":["GO:0051805","GO:0051810","GO:0051809","GO:0020012","GO:0042782"],"synonyms":[{"name":"active evasion of host immune response","type":"related"},{"name":"active evasion of immune response of other organism involved in symbiotic interaction","type":"broad"},{"name":"active immune evasion","type":"broad"},{"name":"evasion by virus of host immune response","type":"related"},{"name":"evasion of host immune response","type":"exact"},{"name":"evasion or tolerance of host immune response","type":"broad"},{"name":"immune evasion","type":"exact"},{"name":"mitigation by virus of host immune response","type":"related"},{"name":"mitigation of host immune response","type":"related"},{"name":"mitigation of host immune response by virus","type":"related"},{"name":"passive evasion of host immune response","type":"related"},{"name":"passive evasion of immune response of other organism involved in symbiotic interaction","type":"related"},{"name":"passive immune evasion","type":"related"},{"name":"suppression by virus of host immune response","type":"related"}],"termid":"GO:0042783"}


id: PBO:0054518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1918","termid":"PBO:0054518"}


id: PBO:0038945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acireductone dioxygenase 1","termid":"PBO:0038945"}


id: GO:0050411
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: agaritine + acceptor-NH2 = 4-hydroxymethylphenylhydrazine + gamma-L-glutamyl-acceptor.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete agaritine gamma-glutamyltransferase activity (obsolete GO:0050411)","synonyms":[{"name":"(gamma-L-glutamyl)-1-N-(4-hydroxymethylphenyl)hydrazine:(acceptor) gamma-glutamyltransferase activity","type":"related"},{"name":"(gamma-L-glutamyl)-N1-(4-hydroxymethylphenyl)hydrazine:(acceptor) gamma-glutamyltransferase activity","type":"related"},{"name":"agaritine g-glutamyltransferase activity","type":"exact"}],"termid":"GO:0050411"}


id: GO:0080072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a sinapoyl group to a nitrogen atom on the spermidine molecule.","definition_xrefs":["PMID:19077165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acyltransferase activity","termid":"GO:0016410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"spermidine:sinapoyl CoA N-acyltransferase activity","termid":"GO:0080072"}


id: RO:0002108
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Relation between a muscle and a motor neuron that synapses to it via a type II bouton.","direct_ancestors":[{"relation_name":"is_a","term_name":"synapsed_by","termid":"RO:0002103"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapsed_by_via_type_II_bouton","termid":"RO:0002108"}


id: PBO:0028784
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mRNA-derived_small_RNA_level","termid":"PBO:0028784"}


id: PBO:0046870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM3 metabolism regulating signaling molecule A","termid":"PBO:0046870"}


id: PBO:0027234
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_spherical_vegetative_cell","termid":"PBO:0027234"}


id: FYPO:0003528
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found at the actomyosin contractile ring is observed there.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized protein during vegetative growth","termid":"FYPO:0000782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"protein mislocalized to actomyosin contractile ring","synonyms":[{"name":"ectopic protein localization to actomyosin contractile ring","type":"exact"},{"name":"protein mislocalised to actomyosin contractile ring","type":"exact"},{"name":"protein mislocalised to actomyosin contractile ring during vegetative growth","type":"exact"},{"name":"protein mislocalized to actomyosin contractile ring during mitotic cell cycle","type":"related"},{"name":"protein mislocalized to actomyosin contractile ring during vegetative growth","type":"exact"},{"name":"protein mislocalized to cytokinetic contractile ring","type":"exact"},{"name":"protein mislocalized to mitotic contractile ring","type":"exact"}],"termid":"FYPO:0003528"}


id: MONDO:0016746
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually well differentiated melanocytic neoplasm arising from the meninges. It is characterized by the presence of epithelioid, fusiform, polyhedral, and spindle melanocytes without evidence of hemorrhage, necrosis, or high mitotic activity. Presenting symptoms include headache, vomiting, and neurological manifestations. Complete excision is usually curative.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system melanocytic neoplasm","termid":"MONDO:0003222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"meningeal melanocytoma","secondary_identifiers":["NCIT:C4662","UMLS:C1266113","ICDO:8728/1","DOID:5900","MEDGEN:226842","Orphanet:252046","SCTID:277527003","GARD:20740"],"synonyms":[{"name":"leptomeningeal melanocytoma","type":"exact"},{"name":"melanocytoma of meninges","type":"exact"},{"name":"melanocytoma of the meninges","type":"exact"},{"name":"meninges melanocytoma","type":"exact"}],"termid":"MONDO:0016746","xrefs":{"Monarch":{"xref_id":"0016746"}}}


id: GO:0048007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses lipid antigen of exogenous origin in association with an MHC class Ib protein complex on its cell surface. Class Ib here refers to non-classical class I molecules, such as those of the CD1 family.","definition_xrefs":["PMID:15928678","PMID:15928680","PMID:10375559","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of exogenous antigen","termid":"GO:0019884"},{"relation_name":"is_a","term_name":"antigen processing and presentation of lipid antigen via MHC class Ib","termid":"GO:0048003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation, exogenous lipid antigen via MHC class Ib","synonyms":[{"name":"antigen presentation, exogenous peptide antigen","type":"exact"},{"name":"exogenous lipid antigen processing and presentation via MHC class Ib","type":"exact"}],"termid":"GO:0048007"}


id: FYPO:0005515
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell cortex is abolished, and the protein is present in the vacuole instead.","definition_xrefs":["PMID:26749213","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"protein mislocalized to vacuole","termid":"FYPO:0005514"},{"relation_name":"is_a","term_name":"abolished protein localization to cell cortex, with protein mislocalized to cytoplasm, during vegetative growth","termid":"FYPO:0005501"},{"relation_name":"is_a","term_name":"protein mislocalized to vacuole","termid":"FYPO:0005514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to cell cortex, with protein mislocalized to vacuole, during vegetative growth","synonyms":[{"name":"abolished protein localisation to cell cortex, with protein mislocalised to vacuole, during vegetative growth","type":"exact"},{"name":"abolished protein localization to cell cortex, with protein mislocalized to vacuole, during mitotic cell cycle","type":"related"},{"name":"protein localization to cell cortex abolished, with protein mislocalized to vacuole, during vegetative growth","type":"exact"},{"name":"protein mislocalized from cortical regions to vacuole during vegetative growth","type":"exact"},{"name":"protein mislocalized to vacuoles from cortical region during vegetative growth","type":"exact"}],"termid":"FYPO:0005515"}


id: MONDO:0011180
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"broad terminal phalanges, familial","secondary_identifiers":["MESH:C566588","UMLS:C1865923","MEDGEN:400879","OMIM:602071"],"synonyms":[{"name":"broad terminal phalanges, familial","type":"exact"}],"termid":"MONDO:0011180","xrefs":{"Monarch":{"xref_id":"0011180"}}}


id: MONDO:0957462
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pulmonary tuberculosis","termid":"MONDO:0006052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary pulmonary tuberculosis","secondary_identifiers":["icd11.foundation:882244568","Orphanet:645814"],"termid":"MONDO:0957462","xrefs":{"Monarch":{"xref_id":"0957462"}}}


id: MONDO:0013837
data:
  {"annotated_genes":["SJAG_04568"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86653],"is_not":false,"summary":null,"term":"MONDO:0013837"}]},"cv_name":"mondo","definition":"Deafness-encephaloneuropathy-obesity-valvulopathy syndrome is a rare mitochondrial disease with marked clinical variability typically characterized by encephalomyopathy, kidney disease (nephrotic syndrome), optic atrophy, early-onset deafness, pancytopenia, obesity, and cardiac disease (valvulopathy). Additionally, macrocephaly, intellectual disability, hyperlactatemia, elevated lactate/pyruvate ratio, insulin-dependent diabetes, livedo reticularis, liver dysfunction and seizures have also been associated.","definition_xrefs":["Orphanet:254898"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coenzyme Q10 deficiency","termid":"MONDO:0018151"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04568":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069","MONDO:0005244"],"is_obsolete":false,"name":"deafness-encephaloneuropathy-obesity-valvulopathy syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3553354","DOID:0070239","GARD:17230","MEDGEN:766268","OMIM:614651"],"synonyms":[{"name":"COQ10D2","type":"related"},{"name":"coenzyme Q10 deficiency, primary, 2","type":"related"},{"name":"coenzyme Q10 deficiency, primary, type 2","type":"exact"},{"name":"hearing loss-encephaloneuropathy-obesity-valvulopathy syndrome","type":"exact"}],"termid":"MONDO:0013837","terms_by_termid":{"MONDO:0013837":null},"xrefs":{"Monarch":{"xref_id":"0013837"}}}


id: PBO:0053420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 362","termid":"PBO:0053420"}


id: PBO:0047427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc epsilon receptor Ig","termid":"PBO:0047427"}


id: MONDO:0017145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"anemia","termid":"MONDO:0002280"},{"relation_name":"is_a","term_name":"inherited hemoglobinopathy","termid":"MONDO:0019050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"beta-thalassemia and related diseases","secondary_identifiers":["MEDGEN:1826095","Orphanet:275749","UMLS:C5680748","GARD:21023"],"termid":"MONDO:0017145","xrefs":{"Monarch":{"xref_id":"0017145"}}}


id: MOD:00453
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a quaternary amine reagent light form group.","definition_xrefs":["PubMed:11857757","Unimod:60"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quaternary amine labeling reagent light form (N-term & K)","synonyms":[{"name":"GIST-Quat","type":"related"},{"name":"Quaternary amine labeling reagent light form (N-term & K)","type":"related"}],"termid":"MOD:00453"}


id: SO:0001954
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region related to restriction enzyme function.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restriction_enzyme_region","synonyms":[{"name":"restriction enzyme region","type":"related"}],"termid":"SO:0001954"}


id: PBO:0002008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L11 (predicted)","termid":"PBO:0002008"}


id: FYPO:0002780
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of reactive oxygen species (ROS) measured in a cell is lower than normal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"},{"relation_name":"is_a","term_name":"altered cellular reactive oxygen species level","termid":"FYPO:0002142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular reactive oxygen species level during vegetative growth","synonyms":[{"name":"decreased ROS accumulation during vegetative growth","type":"related"},{"name":"decreased cellular ROS accumulation during vegetative growth","type":"related"},{"name":"decreased cellular ROS level during vegetative growth","type":"exact"},{"name":"decreased cellular reactive oxygen species accumulation during vegetative growth","type":"related"},{"name":"decreased cellular reactive oxygen species level during mitotic cell cycle","type":"related"},{"name":"reduced cellular ROS level during vegetative growth","type":"exact"},{"name":"reduced cellular reactive oxygen species level during vegetative growth","type":"exact"}],"termid":"FYPO:0002780"}


id: PBO:0080186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"voltage dependent anion channel 3 pseudogene 1","termid":"PBO:0080186"}


id: GO:0072329
data:
  {"annotated_genes":["SJAG_02763","SJAG_01432","SJAG_03804","SJAG_04570","SJAG_00281","SJAG_00706"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73613],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001561"},{"annotations":[71631],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009062"},{"annotations":[105412,101350],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009436"},{"annotations":[80625],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903457"},{"annotations":[114067],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042758"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00281":null,"SJAG_00706":null,"SJAG_01432":null,"SJAG_02763":null,"SJAG_03804":null,"SJAG_04570":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0044248"],"is_obsolete":false,"name":"monocarboxylic acid catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0072329","terms_by_termid":{"GO:0001561":null,"GO:0009062":null,"GO:0009436":null,"GO:0042758":null,"GO:1903457":null}}


id: PBO:0067951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 253","termid":"PBO:0067951"}


id: MONDO:0971035
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A thyroid gland carcinoma containing a medullary carcinoma component that is immunohistochemically positive for calcitonin, and follicular cell-derived carcinoma component that is immunohistochemically positive for thyroglobulin.","definition_xrefs":["DOID:0081459"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid gland carcinoma","termid":"MONDO:0015075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"thyroid gland mixed medullary and follicular cell-derived carcinoma","secondary_identifiers":["UMLS:C5706289","MEDGEN:1815194"],"termid":"MONDO:0971035","xrefs":{"Monarch":{"xref_id":"0971035"}}}


id: PBO:0055725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lamin tail domain containing 2","termid":"PBO:0055725"}


id: GO:1900784
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of fumiquinazoline F.","definition_xrefs":["GOC:di","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete fumiquinazoline F biosynthetic process (obsolete GO:1900784)","synonyms":[{"name":"fumiquinazoline F anabolism","type":"exact"},{"name":"fumiquinazoline F biosynthesis","type":"exact"},{"name":"fumiquinazoline F formation","type":"exact"},{"name":"fumiquinazoline F synthesis","type":"exact"}],"termid":"GO:1900784"}


id: MONDO:0005109
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infection caused by the human immunodeficiency virus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral sexually transmitted disease","termid":"MONDO:0021682"},{"relation_name":"is_a","term_name":"lentivirus infection","termid":"MONDO:0022034"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIV infectious disease","secondary_identifiers":["ICD9:042-042.99","NCIT:C3108","MESH:D015658","UMLS:C0019693","MEDGEN:5583","ICD10CM:B20-B20","EFO:0000764","DOID:526","ICD9:042","NANDO:2200810","SCTID:86406008"],"synonyms":[{"name":"HIV infection","type":"exact"},{"name":"Human immunodeficiency virus caused disease or disorder","type":"exact"},{"name":"Human immunodeficiency virus disease or disorder","type":"exact"},{"name":"Human immunodeficiency virus infectious disease","type":"exact"},{"name":"human immunodeficiency virus infectious disease","type":"related"}],"termid":"MONDO:0005109","xrefs":{"Monarch":{"xref_id":"0005109"}}}


id: PBO:0048535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gem nuclear organelle associated protein 8 pseudogene 1","termid":"PBO:0048535"}


id: MONDO:0004036
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0004036 (obsolete MONDO:0004036)","termid":"MONDO:0004036","xrefs":{"Monarch":{"xref_id":"0004036"}}}


id: PBO:0056963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 23a","termid":"PBO:0056963"}


id: GO:0002919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of peripheral B cell anergy.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of peripheral tolerance induction","termid":"GO:0002660"},{"relation_name":"is_a","term_name":"positive regulation of B cell anergy","termid":"GO:0002672"},{"relation_name":"is_a","term_name":"positive regulation of B cell mediated immunity","termid":"GO:0002714"},{"relation_name":"is_a","term_name":"regulation of peripheral B cell anergy","termid":"GO:0002917"},{"relation_name":"positively_regulates","term_name":"peripheral B cell anergy","termid":"GO:0002453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of peripheral B cell anergy","synonyms":[{"name":"activation of peripheral B cell anergy","type":"narrow"},{"name":"stimulation of peripheral B cell anergy","type":"narrow"},{"name":"up regulation of peripheral B cell anergy","type":"exact"},{"name":"up-regulation of peripheral B cell anergy","type":"exact"},{"name":"upregulation of peripheral B cell anergy","type":"exact"}],"termid":"GO:0002919"}


id: PBO:0086788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; physical interaction with Atg27p suggests a possible role in autophagy","termid":"PBO:0086788"}


id: FYPO:0002037
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of an endodeoxyribonuclease activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endodeoxyribonuclease activity","termid":"FYPO:0002036"},{"relation_name":"is_a","term_name":"decreased nuclease activity","termid":"FYPO:0004253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000652","FYPO:0000654","FYPO:0000661","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"decreased endodeoxyribonuclease activity","synonyms":[{"name":"reduced endodeoxyribonuclease activity","type":"exact"}],"termid":"FYPO:0002037"}


id: PBO:0059631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTCH2 pseudogene 3","termid":"PBO:0059631"}


id: GO:0052895
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: N1-acetylspermine + oxygen + H2O = N1-acetylspermidine + 3-aminopropanal + hydrogen peroxide.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity (obsolete GO:0052895)","termid":"GO:0052895"}


id: GO:0021886
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a neuron located in the hypothalamus. These neurons release gonadotrophin-releasing hormone as a neural transmitter.","definition_xrefs":["GOC:dgh","GOC:dph","GOC:jid","GO_REF:0000021","GOC:cls","PMID:12626695"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypothalamus cell differentiation","termid":"GO:0021979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hypothalamus gonadotrophin-releasing hormone neuron differentiation","synonyms":[{"name":"hypothalamus gonadotropin-releasing hormone neuron differentiation","type":"exact"}],"termid":"GO:0021886"}


id: PBO:0025439
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaric acidemia type II","termid":"PBO:0025439"}


id: PBO:0056484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MATR3 pseudogene 1","termid":"PBO:0056484"}


id: PBO:0069754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1037, pseudogene","termid":"PBO:0069754"}


id: PBO:0083908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Flavoprotein subunit of succinate dehydrogenase; couples the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; FAD binding to Sdh1p is required for the assembly of the succinate dehydrogenase subunits; mutations in human ortholog SDHA are associated with Leigh syndrome and predisposition to several cancers","termid":"PBO:0083908"}


id: GO:1903267
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of ornithine catabolic process.","definition_xrefs":["GOC:bhm","GO_REF:0000058","PMID:12679340","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"negative regulation of amino acid metabolic process","termid":"GO:0045763"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of ornithine catabolic process","termid":"GO:1903266"},{"relation_name":"negatively_regulates","term_name":"ornithine catabolic process","termid":"GO:0006593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044248"},{"rel_name":"regulates","termid":"GO:0044248"}],"interesting_parent_ids":["GO:0008150","GO:0044248","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"negative regulation of ornithine catabolic process","synonyms":[{"name":"down regulation of ornithine breakdown","type":"exact"},{"name":"down regulation of ornithine catabolic process","type":"exact"},{"name":"down regulation of ornithine catabolism","type":"exact"},{"name":"down regulation of ornithine degradation","type":"exact"},{"name":"down-regulation of ornithine breakdown","type":"exact"},{"name":"down-regulation of ornithine catabolic process","type":"exact"},{"name":"down-regulation of ornithine catabolism","type":"exact"},{"name":"down-regulation of ornithine degradation","type":"exact"},{"name":"downregulation of ornithine breakdown","type":"exact"},{"name":"downregulation of ornithine catabolic process","type":"exact"},{"name":"downregulation of ornithine catabolism","type":"exact"},{"name":"downregulation of ornithine degradation","type":"exact"},{"name":"inhibition of ornithine breakdown","type":"narrow"},{"name":"inhibition of ornithine catabolic process","type":"narrow"},{"name":"inhibition of ornithine catabolism","type":"narrow"},{"name":"inhibition of ornithine degradation","type":"narrow"},{"name":"negative regulation of ornithine breakdown","type":"exact"},{"name":"negative regulation of ornithine catabolism","type":"exact"},{"name":"negative regulation of ornithine degradation","type":"exact"}],"termid":"GO:1903267"}


id: GO:0110058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of blood vessel endothelial cell differentiation.","definition_xrefs":["GOC:BHF","GOC:rph","GOC:BHF_miRNA","PMID:23072816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endothelial cell differentiation","termid":"GO:0045603"},{"relation_name":"is_a","term_name":"regulation of blood vessel endothelial cell differentiation","termid":"GO:0110057"},{"relation_name":"positively_regulates","term_name":"blood vessel endothelial cell differentiation","termid":"GO:0060837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of blood vessel endothelial cell differentiation","termid":"GO:0110058"}


id: MONDO:0004673
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm involving the lower lip.","direct_ancestors":[{"relation_name":"is_a","term_name":"lip cancer","termid":"MONDO:0006834"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"lower lip cancer","secondary_identifiers":["DOID:8883","ICD9:140.1","SCTID:363373004","UMLS:C0432520","MEDGEN:609573"],"synonyms":[{"name":"cancer of lower lip","type":"exact"},{"name":"lower lip cancer","type":"exact"},{"name":"malignant lower lip neoplasm","type":"exact"},{"name":"malignant neoplasm of lower lip","type":"exact"}],"termid":"MONDO:0004673","xrefs":{"Monarch":{"xref_id":"0004673"}}}


id: PR:Q09919
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fip1 gene.","definition_xrefs":["UniProtKB:Q09919","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane iron permease (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F7.07c","synonyms":[{"name":"Spom972h-fip1","type":"exact"}],"termid":"PR:Q09919"}


id: PBO:0004727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ergothioneine biosynthesis protein (predicted)","termid":"PBO:0004727"}


id: PBO:0055477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2910","termid":"PBO:0055477"}


id: PBO:0001287
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Graves' disease","termid":"PBO:0001287"}


id: PBO:0072999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium voltage-gated channel beta subunit 1","termid":"PBO:0072999"}


id: PR:Q9UTQ1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pyridoxine-5'-phosphate oxidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01911","PRO:DNx","PANTHER:PTHR10851:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxamine 5'-phosphate oxidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1093.02","secondary_identifiers":["UniProtKB:Q9UTQ1"],"synonyms":[{"name":"PNP/PMP oxidase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PNPOx (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PNPO","type":"exact"}],"termid":"PR:Q9UTQ1"}


id: MONDO:0010413
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 95","secondary_identifiers":["OMIM:300716","GARD:22684","UMLS:C2678034","MEDGEN:394715","MESH:C567470"],"synonyms":[{"name":"MRX95","type":"exact"},{"name":"intellectual disability, X-linked 95","type":"exact"},{"name":"mental retardation, X-linked 95","type":"related"},{"name":"mental retardation, X-linked 95, X-linked dominant","type":"exact"}],"termid":"MONDO:0010413","xrefs":{"Monarch":{"xref_id":"0010413"}}}


id: GO:1901880
data:
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id: GO:0019538
data:
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id: MONDO:0018137
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Type 1 temperature sensitive oculocutaneous albinism (OCA1-TS) is an extremely rare form of OCA1 characterized by the production of temperature sensitive tyrosinase proteins leading to dark hair on the legs, arms and chest (cooler body areas) and white hair on the scalp, axilla and pubic area (warmer body areas).","definition_xrefs":["Orphanet:352737"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oculocutaneous albinism type 1","termid":"MONDO:0018135"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005093","MONDO:0005066"],"is_obsolete":false,"name":"temperature-sensitive oculocutaneous albinism type 1","secondary_identifiers":["UMLS:C1847132","GARD:17530","MEDGEN:337736"],"synonyms":[{"name":"OCA1-TS","type":"exact"},{"name":"TS OCA type 1","type":"exact"}],"termid":"MONDO:0018137","xrefs":{"Monarch":{"xref_id":"0018137"}}}


id: GO:0062243
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer of the two endoplasmic reticulum-derived lipid bilayer membranes that bound a double membrane vesicle viral factory.","definition_xrefs":["PMID:22440839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"double membrane vesicle viral factory membrane","termid":"GO:0062242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"double membrane vesicle viral factory outer membrane","synonyms":[{"name":"outer membrane of double membrane vesicle viral factory","type":"exact"}],"termid":"GO:0062243"}


id: MONDO:0008884
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome is characterized by congenital anodontia, a small maxilla, short stature with shortened metacarpals and metatarsals, sparse hair, albinoidism and multiple ocular anomalies. It has been described in three siblings (one brother and two sisters). Transmission is autosomal recessive.","definition_xrefs":["Orphanet:2713"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"oculoosteocutaneous syndrome","secondary_identifiers":["MEDGEN:347867","GARD:992","OMIM:211370","SCTID:722061006","MESH:C565893","UMLS:C1859385"],"synonyms":[{"name":"BRACHYMETAPODY-anodontia-hypotrichosis-ALBINOIDISM","type":"exact"},{"name":"anodontia-hypotrichosis syndrome","type":"exact"},{"name":"brachymetapody anodontia hypotrichosis albinoidism","type":"exact"},{"name":"oculoosteocutaneous syndrome","type":"exact"}],"termid":"MONDO:0008884","xrefs":{"Monarch":{"xref_id":"0008884"}}}


id: GO:0060757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Behavior by which an adult locates food.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"foraging behavior","termid":"GO:0060756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adult foraging behavior","termid":"GO:0060757"}


id: MONDO:0031646
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Braddock-Carey syndrome","secondary_identifiers":["OMIMPS:619980"],"termid":"MONDO:0031646","xrefs":{"Monarch":{"xref_id":"0031646"}}}


id: PBO:0017679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase with rhodanese domain (predicted)","termid":"PBO:0017679"}


id: MONDO:0021231
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm (disease) that involves the retina.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal disorder","termid":"MONDO:0005283"},{"relation_name":"is_a","term_name":"eye neoplasm","termid":"MONDO:0021220"},{"relation_name":"is_a","term_name":"nervous system neoplasm","termid":"MONDO:0021248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"retina neoplasm","secondary_identifiers":["UMLS:C0524801","EFO:1000509","MEDGEN:101180","NCIT:C4800"],"synonyms":[{"name":"neoplasm of retina","type":"exact"},{"name":"neoplasm of the retina","type":"exact"},{"name":"retina neoplasm (disease)","type":"exact"},{"name":"retina tumor","type":"exact"},{"name":"retina tumour","type":"exact"},{"name":"retinal neoplasm","type":"exact"},{"name":"retinal tumor","type":"exact"},{"name":"retinal tumour","type":"exact"},{"name":"tumor of retina","type":"exact"},{"name":"tumor of the retina","type":"exact"},{"name":"tumour of retina","type":"exact"},{"name":"tumour of the retina","type":"exact"}],"termid":"MONDO:0021231","xrefs":{"Monarch":{"xref_id":"0021231"}}}


id: GO:0002802
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of antifungal peptide secretion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of antimicrobial peptide secretion","termid":"GO:0002796"},{"relation_name":"is_a","term_name":"regulation of antifungal peptide secretion","termid":"GO:0002800"},{"relation_name":"is_a","term_name":"positive regulation of antifungal peptide production","termid":"GO:0002804"},{"relation_name":"positively_regulates","term_name":"antifungal peptide secretion","termid":"GO:0002782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0010467"],"is_obsolete":false,"name":"positive regulation of antifungal peptide secretion","synonyms":[{"name":"activation of antifungal peptide secretion","type":"narrow"},{"name":"stimulation of antifungal peptide secretion","type":"narrow"},{"name":"up regulation of antifungal peptide secretion","type":"exact"},{"name":"up-regulation of antifungal peptide secretion","type":"exact"},{"name":"upregulation of antifungal peptide secretion","type":"exact"}],"termid":"GO:0002802"}


id: PBO:0059166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPV17 mitochondrial inner membrane protein like","termid":"PBO:0059166"}


id: PBO:0116273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative pseudopeptidase; conserved fungal protein and member of the M14 family of metallocarboxypeptidases but contains substitutions in active site residues important for catalysis and lacks activity with standard substrates; contains a cleavable pro domain; required for normal cell wall assembly in some strains","termid":"PBO:0116273"}


id: PBO:0017573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 Ubc6 (predicted)","termid":"PBO:0017573"}


id: SO:0000336
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \\\"normal\\\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \\\"normal\\\" paralog).","direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"},{"relation_name":"non_functional_homolog_of","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene","secondary_identifiers":["http://en.wikipedia.org/wiki/Pseudogene"],"synonyms":[{"name":"INSDC_feature:gene","type":"broad"},{"name":"INSDC_qualifier:pseudo","type":"exact"},{"name":"INSDC_qualifier:unknown","type":"exact"}],"termid":"SO:0000336"}


id: PBO:0071345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 3","termid":"PBO:0071345"}


id: MONDO:0006195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign nodular lesion protruding above the surface of the endometrium. It is composed of a fibrous stroma that contains thick-walled blood vessels and dilated endometrial glands. Polypectomy is the treatment of choice. Only few cases with recurrence have been reported.","definition_xrefs":["NCIT:C6433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endometrial disorder","termid":"MONDO:0000931"},{"relation_name":"is_a","term_name":"uterine polyp","termid":"MONDO:0004701"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endometrial polyp","secondary_identifiers":["UMLS:C1704273","EFO:1000237","MEDGEN:312370"],"synonyms":[{"name":"endometrial polyp","type":"exact"},{"name":"endometrial stromal polyp","type":"exact"},{"name":"endometrium polyp","type":"exact"},{"name":"polyp of endometrium","type":"exact"},{"name":"polyp of the endometrium","type":"exact"},{"name":"polyp, endometrial stromal, benign","type":"exact"}],"termid":"MONDO:0006195","xrefs":{"Monarch":{"xref_id":"0006195"}}}


id: MONDO:0014068
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cone-rod dystrophy that has material basis in variation in the chromosome region 10q26.","definition_xrefs":["DOID:0111023","PMID:22929024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cone-rod dystrophy","termid":"MONDO:0015993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cone-rod dystrophy 17","secondary_identifiers":["GARD:15914","MEDGEN:767524","UMLS:C3554610","OMIM:615163"],"synonyms":[{"name":"CORD17","type":"exact"},{"name":"cone-rod dystrophy 17","type":"exact"},{"name":"cone-rod dystrophy type 17","type":"exact"}],"termid":"MONDO:0014068","xrefs":{"Monarch":{"xref_id":"0014068"}}}


id: MONDO:1010292
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ankylosing spondylitis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rheumatoid arthritis, non-human animal","termid":"MONDO:1010294"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankylosing spondylitis, non-human animal","secondary_identifiers":["OMIA:000046"],"termid":"MONDO:1010292","xrefs":{"Monarch":{"xref_id":"1010292"}}}


id: MONDO:0008886
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sabinas brittle hair syndrome","secondary_identifiers":["Orphanet:3123","DOID:0111874","UMLS:C0796271","icd11.foundation:1722502589","MEDGEN:163238","OMIM:211390","MESH:C536320"],"synonyms":[{"name":"Sabinas brittle hair syndrome","type":"exact"},{"name":"Sabinas syndrome","type":"related"},{"name":"brittle hair and mental Deficit","type":"related"},{"name":"brittle hair syndrome, Sabinas type","type":"exact"}],"termid":"MONDO:0008886","xrefs":{"Monarch":{"xref_id":"0008886"}}}


id: PBO:0072669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor transporter protein 2","termid":"PBO:0072669"}


id: PBO:0067159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 211, pseudogene","termid":"PBO:0067159"}


id: MONDO:0032758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"neurodegeneration, early-onset, with choreoathetoid movements and microcytic anemia","secondary_identifiers":["UMLS:C5193104","OMIM:618451","MEDGEN:1676579"],"synonyms":[{"name":"NDCAMA","type":"exact"}],"termid":"MONDO:0032758","xrefs":{"Monarch":{"xref_id":"0032758"}}}


id: GO:0070777
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which D-aspartate, the D-enantiomer of the anion of (2R)-2-aminobutanedioic acid  is transported across a lipid bilayer, from one side of a membrane to the other, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aspartate transmembrane transport","termid":"GO:0015810"},{"relation_name":"is_a","term_name":"D-amino acid transport","termid":"GO:0042940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"D-aspartate transmembrane transport","termid":"GO:0070777"}


id: GO:0015213
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of uridine, uracil riboside, from one side of a membrane to the other.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside transmembrane transporter activity","termid":"GO:0015214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"uridine transmembrane transporter activity","synonyms":[{"name":"uracil/uridine permease activity","type":"narrow"}],"termid":"GO:0015213"}


